BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17006
         (446 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide
           Ekpaavvapittg From Sip
          Length = 193

 Score =  321 bits (822), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 151/191 (79%), Positives = 167/191 (87%), Gaps = 1/191 (0%)

Query: 256 VAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLN 315
           VA +V FPC+Y  +GC + L HTEK +HE+ CE+RPY CPCPGASCKW G+LD VM HL 
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60

Query: 316 QSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIV 374
             HK+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIV
Sbjct: 61  HQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 120

Query: 375 QLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFAD 434
           QLIG+RKQAE+F YRLELNGHRRRLTWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+
Sbjct: 121 QLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAE 180

Query: 435 NKNLGINVTIA 445
           N NLGINVTI+
Sbjct: 181 NGNLGINVTIS 191



 Score =  214 bits (546), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 100/134 (74%), Positives = 111/134 (82%), Gaps = 1/134 (0%)

Query: 88  VAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLN 147
           VA +V FPC+Y  +GC + L HTEK +HE+ CE+RPY CPCPGASCKW G+LD VM HL 
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60

Query: 148 QSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIV 206
             HK+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIV
Sbjct: 61  HQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 120

Query: 207 QLIGSRKQAEHFTY 220
           QLIG+RKQAE+F Y
Sbjct: 121 QLIGTRKQAENFAY 134


>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog
 pdb|1K2F|B Chain B, Siah, Seven In Absentia Homolog
          Length = 190

 Score =  319 bits (817), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 150/188 (79%), Positives = 165/188 (87%), Gaps = 1/188 (0%)

Query: 259 TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSH 318
           +V FPC+Y  +GC + L HTEK EHE+ CE+RPY CPCPGASCKW G+LD VM HL   H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60

Query: 319 KTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLI 377
           K+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLI
Sbjct: 61  KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 120

Query: 378 GSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKN 437
           G+RKQAE+F YRLELNGHRRRLTWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N N
Sbjct: 121 GTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGN 180

Query: 438 LGINVTIA 445
           LGINVTI+
Sbjct: 181 LGINVTIS 188



 Score =  213 bits (541), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/131 (75%), Positives = 109/131 (83%), Gaps = 1/131 (0%)

Query: 91  TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSH 150
           +V FPC+Y  +GC + L HTEK EHE+ CE+RPY CPCPGASCKW G+LD VM HL   H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60

Query: 151 KTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLI 209
           K+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLI
Sbjct: 61  KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 120

Query: 210 GSRKQAEHFTY 220
           G+RKQAE+F Y
Sbjct: 121 GTRKQAENFAY 131


>pdb|2AN6|A Chain A, Protein-Peptide Complex
 pdb|2AN6|B Chain B, Protein-Peptide Complex
 pdb|2AN6|C Chain C, Protein-Peptide Complex
 pdb|2AN6|D Chain D, Protein-Peptide Complex
          Length = 191

 Score =  318 bits (816), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 150/188 (79%), Positives = 165/188 (87%), Gaps = 1/188 (0%)

Query: 259 TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSH 318
           +V FPC+Y  +GC + L HTEK EHE+ CE+RPY CPCPGASCKW G+LD VM HL   H
Sbjct: 2   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 61

Query: 319 KTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLI 377
           K+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLI
Sbjct: 62  KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 121

Query: 378 GSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKN 437
           G+RKQAE+F YRLELNGHRRRLTWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N N
Sbjct: 122 GTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGN 181

Query: 438 LGINVTIA 445
           LGINVTI+
Sbjct: 182 LGINVTIS 189



 Score =  213 bits (541), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/131 (75%), Positives = 109/131 (83%), Gaps = 1/131 (0%)

Query: 91  TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSH 150
           +V FPC+Y  +GC + L HTEK EHE+ CE+RPY CPCPGASCKW G+LD VM HL   H
Sbjct: 2   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 61

Query: 151 KTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQE-IDGRQHFFAIVQLI 209
           K+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE  DG Q FFAIVQLI
Sbjct: 62  KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 121

Query: 210 GSRKQAEHFTY 220
           G+RKQAE+F Y
Sbjct: 122 GTRKQAENFAY 132


>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
 pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
          Length = 62

 Score = 33.9 bits (76), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 39 CPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPL 77
          C VC D  +  I+    GHLVC+ C P L  C  CR P+
Sbjct: 16 CKVCLDRAVS-IVFVPCGHLVCAECAPGLQLCPICRAPV 53



 Score = 31.6 bits (70), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 214 QAEHFTYCQSGHLVCSNCRPKLSCCSTCRGPL 245
           +A    +   GHLVC+ C P L  C  CR P+
Sbjct: 22  RAVSIVFVPCGHLVCAECAPGLQLCPICRAPV 53


>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
           Promotes E3 Ligase Activation Via Dimerization
          Length = 345

 Score = 33.1 bits (74), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 3   DSTMNNTVGIVGSRRHEPTHPSMCPGTSTDLASLFE---CPVCFDYVLPPI-IQCQSGHL 58
           DST+   + +  + ++ PT           L  L E   C VC D  +  + I C  GHL
Sbjct: 259 DSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPC--GHL 316

Query: 59  V-CSNCRPKLSCCSTCRGPL-GNIRNL 83
           V C  C P L  C  CRG + G +R  
Sbjct: 317 VVCQECAPSLRKCPICRGIIKGTVRTF 343


>pdb|3QAG|A Chain A, Human Glutathione Transferase O2 With Glutathione -New
           Crystal Form
 pdb|3Q18|A Chain A, Human Glutathione Transferase O2
 pdb|3Q18|B Chain B, Human Glutathione Transferase O2
 pdb|3Q19|A Chain A, Human Glutathione Transferase O2
 pdb|3Q19|B Chain B, Human Glutathione Transferase O2
          Length = 239

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 149 SHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGH 185
           SH+T   L+ +DI     +INL    +W   +  FGH
Sbjct: 35  SHRTRLVLKAKDIRHEVVNINLRNKPEWYYTKHPFGH 71



 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 317 SHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGH 353
           SH+T   L+ +DI     +INL    +W   +  FGH
Sbjct: 35  SHRTRLVLKAKDIRHEVVNINLRNKPEWYYTKHPFGH 71


>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
 pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
          Length = 74

 Score = 29.3 bits (64), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 39 CPVCFDYVLPPIIQCQSGHLV-CSNCRPKLSCCSTCRGPL-GNIRNL 83
          C VC D  +  I+    GHLV C +C P L  C  CR  + G +R  
Sbjct: 27 CKVCMDKEVS-IVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTF 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,480,004
Number of Sequences: 62578
Number of extensions: 525946
Number of successful extensions: 1314
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1291
Number of HSP's gapped (non-prelim): 27
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)