Query psy17006
Match_columns 446
No_of_seqs 350 out of 1347
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 19:21:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03145 Sina: Seven in absent 100.0 5.9E-40 1.3E-44 305.8 15.0 196 248-443 1-198 (198)
2 KOG3002|consensus 100.0 1.5E-39 3.3E-44 315.7 13.1 231 215-445 59-294 (299)
3 cd03829 Sina Seven in absentia 100.0 2.7E-34 5.8E-39 236.6 5.6 125 322-446 2-127 (127)
4 KOG3002|consensus 100.0 3.8E-30 8.2E-35 250.1 9.9 188 31-218 43-234 (299)
5 PF03145 Sina: Seven in absent 99.8 2.1E-21 4.6E-26 181.0 4.5 139 80-218 1-141 (198)
6 KOG0297|consensus 99.5 7.1E-14 1.5E-18 142.8 7.6 126 31-162 16-151 (391)
7 cd03829 Sina Seven in absentia 99.4 1.1E-13 2.4E-18 114.8 4.5 67 154-220 2-69 (127)
8 PLN03086 PRLI-interacting fact 99.0 1.5E-10 3.2E-15 121.5 1.0 149 91-319 405-565 (567)
9 PF02176 zf-TRAF: TRAF-type zi 98.5 2.8E-08 6.2E-13 74.2 1.6 56 256-313 4-60 (60)
10 PF14835 zf-RING_6: zf-RING of 98.4 6.6E-08 1.4E-12 71.6 -0.0 46 32-77 3-50 (65)
11 PF02176 zf-TRAF: TRAF-type zi 98.1 1.1E-06 2.3E-11 65.6 2.2 53 91-145 7-60 (60)
12 smart00504 Ubox Modified RING 98.1 1.9E-06 4.1E-11 64.8 2.6 55 36-91 1-62 (63)
13 PF15227 zf-C3HC4_4: zinc fing 98.1 7E-07 1.5E-11 61.7 -0.1 34 39-73 1-42 (42)
14 TIGR00599 rad18 DNA repair pro 98.1 2E-06 4.2E-11 87.5 2.9 64 29-93 19-89 (397)
15 KOG0320|consensus 98.0 1.8E-06 3.9E-11 76.8 1.9 47 32-78 127-178 (187)
16 PLN03086 PRLI-interacting fact 98.0 8.5E-06 1.8E-10 86.1 6.8 118 121-317 405-537 (567)
17 KOG0287|consensus 98.0 8E-07 1.7E-11 86.0 -1.3 65 29-94 16-87 (442)
18 PLN03208 E3 ubiquitin-protein 98.0 1.8E-06 3.9E-11 78.7 0.8 46 32-78 14-79 (193)
19 PF13923 zf-C3HC4_2: Zinc fing 98.0 1.5E-06 3.3E-11 59.0 -0.1 35 39-73 1-39 (39)
20 KOG0823|consensus 97.8 1.6E-05 3.5E-10 73.9 2.9 46 32-78 43-95 (230)
21 KOG0297|consensus 97.7 3.3E-05 7.1E-10 79.4 5.3 94 221-319 38-139 (391)
22 PF13920 zf-C3HC4_3: Zinc fing 97.7 6.7E-06 1.5E-10 59.0 -0.3 43 35-78 1-48 (50)
23 COG5432 RAD18 RING-finger-cont 97.7 7.9E-06 1.7E-10 77.7 -0.3 118 28-150 17-183 (391)
24 PF04564 U-box: U-box domain; 97.6 2.1E-05 4.6E-10 61.1 1.4 58 34-92 2-67 (73)
25 PF14634 zf-RING_5: zinc-RING 97.5 2.5E-05 5.4E-10 54.5 0.3 38 38-75 1-44 (44)
26 PF13639 zf-RING_2: Ring finge 97.4 2.7E-05 5.8E-10 54.2 -1.0 37 38-74 2-44 (44)
27 PHA02929 N1R/p28-like protein; 97.3 5.8E-05 1.3E-09 71.8 0.6 46 34-79 172-228 (238)
28 PF00097 zf-C3HC4: Zinc finger 97.3 6.3E-05 1.4E-09 51.4 0.1 35 39-73 1-41 (41)
29 cd00162 RING RING-finger (Real 97.1 0.00012 2.7E-09 50.1 0.1 40 38-77 1-45 (45)
30 TIGR00570 cdk7 CDK-activating 97.0 0.00034 7.3E-09 68.6 2.2 55 36-90 3-73 (309)
31 KOG0311|consensus 96.9 3.9E-05 8.4E-10 75.2 -4.9 65 28-92 35-108 (381)
32 KOG2164|consensus 96.9 0.00026 5.6E-09 72.9 0.4 67 11-78 160-236 (513)
33 KOG0317|consensus 96.8 0.00031 6.8E-09 67.4 0.4 44 34-78 237-284 (293)
34 PHA02926 zinc finger-like prot 96.5 0.00054 1.2E-08 63.5 -0.8 46 33-79 167-231 (242)
35 PF13445 zf-RING_UBOX: RING-ty 96.3 0.00068 1.5E-08 46.9 -1.0 27 39-67 1-31 (43)
36 COG5574 PEX10 RING-finger-cont 96.1 0.0011 2.3E-08 63.0 -0.9 44 34-78 213-262 (271)
37 smart00184 RING Ring finger. E 95.9 0.0027 6E-08 41.6 0.5 34 39-73 1-39 (39)
38 PF07800 DUF1644: Protein of u 95.8 0.019 4E-07 50.7 5.4 28 122-151 106-133 (162)
39 KOG2177|consensus 95.5 0.0029 6.2E-08 61.7 -0.8 68 29-97 6-78 (386)
40 KOG4159|consensus 95.4 0.0032 6.9E-08 64.4 -0.8 50 28-78 76-129 (398)
41 KOG0978|consensus 95.4 0.0034 7.4E-08 67.8 -0.8 48 31-79 638-690 (698)
42 COG5152 Uncharacterized conser 95.0 0.0089 1.9E-07 54.3 1.0 54 37-91 197-256 (259)
43 KOG2660|consensus 93.8 0.015 3.2E-07 57.2 -0.5 63 30-92 9-82 (331)
44 KOG1813|consensus 93.8 0.046 9.9E-07 52.9 2.8 43 37-80 242-288 (313)
45 KOG4172|consensus 93.6 0.0063 1.4E-07 43.6 -2.6 40 37-78 8-54 (62)
46 KOG2879|consensus 93.5 0.051 1.1E-06 52.1 2.5 48 31-78 234-287 (298)
47 PF14570 zf-RING_4: RING/Ubox 93.5 0.016 3.4E-07 40.9 -0.7 39 39-77 1-47 (48)
48 PF12678 zf-rbx1: RING-H2 zinc 93.2 0.032 6.9E-07 43.3 0.6 36 39-74 22-73 (73)
49 COG5222 Uncharacterized conser 93.0 0.041 8.8E-07 53.1 1.1 55 37-91 275-338 (427)
50 KOG0824|consensus 91.5 0.086 1.9E-06 51.2 1.3 43 36-79 7-54 (324)
51 PF11789 zf-Nse: Zinc-finger o 91.2 0.043 9.4E-07 40.4 -0.8 32 35-66 10-41 (57)
52 PF13920 zf-C3HC4_3: Zinc fing 91.2 0.029 6.3E-07 39.9 -1.7 29 219-247 16-49 (50)
53 PF14447 Prok-RING_4: Prokaryo 91.0 0.21 4.6E-06 36.2 2.6 42 35-78 6-50 (55)
54 COG5175 MOT2 Transcriptional r 90.9 0.062 1.3E-06 52.8 -0.3 44 34-78 13-64 (480)
55 KOG4275|consensus 90.6 0.065 1.4E-06 51.7 -0.4 42 35-77 299-341 (350)
56 KOG2462|consensus 90.2 0.69 1.5E-05 44.6 6.1 125 31-163 125-253 (279)
57 PF07800 DUF1644: Protein of u 88.8 0.68 1.5E-05 41.0 4.5 23 299-321 113-135 (162)
58 PF14634 zf-RING_5: zinc-RING 88.6 0.11 2.4E-06 35.9 -0.4 23 221-243 18-44 (44)
59 KOG4739|consensus 88.5 0.24 5.3E-06 46.8 1.7 43 36-78 3-48 (233)
60 PF05290 Baculo_IE-1: Baculovi 88.4 0.14 3E-06 43.9 -0.1 44 35-79 79-133 (140)
61 PF12861 zf-Apc11: Anaphase-pr 88.2 0.14 3.1E-06 40.7 -0.0 40 39-78 35-82 (85)
62 KOG0320|consensus 85.7 0.18 3.8E-06 45.5 -0.9 29 219-247 147-179 (187)
63 KOG4265|consensus 84.3 0.48 1E-05 47.3 1.3 43 34-78 288-336 (349)
64 PF14835 zf-RING_6: zf-RING of 82.6 1.1 2.4E-05 33.7 2.3 34 222-255 25-63 (65)
65 KOG0802|consensus 81.8 0.32 6.9E-06 52.4 -1.1 42 34-77 289-340 (543)
66 KOG1002|consensus 81.2 0.38 8.3E-06 50.1 -0.7 48 30-78 530-586 (791)
67 KOG4367|consensus 79.7 0.52 1.1E-05 48.0 -0.3 32 34-66 2-33 (699)
68 KOG2231|consensus 79.1 1.9 4.1E-05 47.0 3.6 40 38-78 2-52 (669)
69 KOG3608|consensus 78.2 0.68 1.5E-05 46.1 -0.0 79 236-320 264-347 (467)
70 PF07191 zinc-ribbons_6: zinc- 78.1 0.64 1.4E-05 35.5 -0.2 37 37-78 2-41 (70)
71 KOG3039|consensus 77.4 0.99 2.1E-05 42.8 0.8 44 35-78 220-270 (303)
72 PF05605 zf-Di19: Drought indu 77.0 1.9 4.1E-05 31.1 2.1 48 94-150 3-53 (54)
73 PF05605 zf-Di19: Drought indu 75.6 1.9 4.1E-05 31.1 1.7 49 262-319 3-54 (54)
74 PF14447 Prok-RING_4: Prokaryo 74.0 2.2 4.7E-05 31.0 1.6 26 222-247 24-51 (55)
75 PF13909 zf-H2C2_5: C2H2-type 73.4 2.3 4.9E-05 25.0 1.4 23 293-319 2-24 (24)
76 PF11793 FANCL_C: FANCL C-term 72.7 0.86 1.9E-05 35.0 -0.7 43 36-78 2-66 (70)
77 PF14570 zf-RING_4: RING/Ubox 72.6 0.56 1.2E-05 33.2 -1.6 30 216-245 13-47 (48)
78 KOG0317|consensus 71.1 1.1 2.3E-05 43.6 -0.7 27 221-247 255-285 (293)
79 PHA02929 N1R/p28-like protein; 70.8 1.2 2.6E-05 42.6 -0.3 28 221-248 198-229 (238)
80 PF13913 zf-C2HC_2: zinc-finge 70.6 2 4.3E-05 26.0 0.7 17 103-119 8-24 (25)
81 COG5540 RING-finger-containing 69.0 1.8 4E-05 42.3 0.5 44 35-78 322-372 (374)
82 KOG3161|consensus 68.2 0.7 1.5E-05 49.3 -2.7 39 31-71 6-51 (861)
83 TIGR00599 rad18 DNA repair pro 67.7 2.3 4.9E-05 43.8 0.9 36 221-256 42-84 (397)
84 PF05253 zf-U11-48K: U11-48K-l 66.4 1.5 3.2E-05 27.0 -0.5 24 262-288 3-26 (27)
85 COG5432 RAD18 RING-finger-cont 66.3 1.4 2.9E-05 42.8 -1.0 30 220-249 40-73 (391)
86 KOG1039|consensus 66.2 2.5 5.5E-05 42.6 0.8 45 34-78 159-221 (344)
87 KOG0287|consensus 66.2 1.6 3.5E-05 43.2 -0.5 29 219-247 37-69 (442)
88 TIGR00570 cdk7 CDK-activating 65.7 1.7 3.7E-05 43.0 -0.5 25 222-246 25-54 (309)
89 KOG3608|consensus 65.7 2.6 5.6E-05 42.1 0.7 125 34-164 205-363 (467)
90 PF07975 C1_4: TFIIH C1-like d 65.5 3.2 6.9E-05 29.8 1.0 36 39-74 2-50 (51)
91 PF04641 Rtf2: Rtf2 RING-finge 63.9 4.7 0.0001 39.2 2.2 47 32-78 109-161 (260)
92 KOG1571|consensus 63.4 2.7 5.8E-05 42.2 0.4 48 30-78 299-347 (355)
93 KOG0978|consensus 62.9 1.5 3.3E-05 47.9 -1.5 46 202-247 640-690 (698)
94 PF10571 UPF0547: Uncharacteri 62.6 4 8.6E-05 25.0 0.9 22 38-59 2-24 (26)
95 KOG4185|consensus 61.7 4.9 0.00011 39.6 1.9 55 36-92 3-77 (296)
96 KOG3800|consensus 60.5 3.5 7.6E-05 40.2 0.6 53 38-90 2-70 (300)
97 PRK14890 putative Zn-ribbon RN 59.0 7.9 0.00017 28.6 2.1 36 259-306 23-59 (59)
98 KOG0825|consensus 58.8 1.5 3.2E-05 48.0 -2.4 42 37-78 124-171 (1134)
99 KOG0804|consensus 58.5 4.8 0.0001 41.5 1.2 46 31-76 170-220 (493)
100 KOG2462|consensus 58.5 7.5 0.00016 37.7 2.5 100 34-150 159-267 (279)
101 KOG1785|consensus 58.2 2.5 5.4E-05 42.8 -0.8 43 35-78 367-416 (563)
102 KOG1812|consensus 57.7 6.3 0.00014 40.6 1.9 32 35-66 145-179 (384)
103 PF12660 zf-TFIIIC: Putative z 57.6 4.4 9.4E-05 33.3 0.6 40 37-77 15-65 (99)
104 PLN03208 E3 ubiquitin-protein 56.9 4.9 0.00011 37.1 0.9 29 219-247 32-80 (193)
105 KOG3579|consensus 53.6 10 0.00022 36.9 2.4 32 35-66 267-301 (352)
106 KOG3039|consensus 51.9 6.8 0.00015 37.3 1.0 36 30-66 37-72 (303)
107 PF14446 Prok-RING_1: Prokaryo 51.1 7.3 0.00016 28.3 0.8 42 36-77 5-51 (54)
108 KOG4275|consensus 50.2 3.4 7.4E-05 40.2 -1.3 25 222-246 317-342 (350)
109 PF10083 DUF2321: Uncharacteri 50.0 4.1 8.9E-05 36.1 -0.7 21 226-246 29-50 (158)
110 KOG1814|consensus 48.6 8.7 0.00019 39.3 1.2 85 32-119 180-296 (445)
111 PHA02926 zinc finger-like prot 47.5 3.3 7E-05 39.0 -1.8 27 222-248 196-232 (242)
112 smart00734 ZnF_Rad18 Rad18-lik 47.4 17 0.00037 22.1 2.0 22 124-149 2-23 (26)
113 cd00730 rubredoxin Rubredoxin; 46.4 16 0.00035 26.1 2.0 18 27-44 25-42 (50)
114 COG2888 Predicted Zn-ribbon RN 46.0 14 0.0003 27.3 1.6 36 259-306 25-61 (61)
115 PF10235 Cript: Microtubule-as 45.8 12 0.00026 30.2 1.4 36 37-78 45-80 (90)
116 COG5236 Uncharacterized conser 45.3 9.8 0.00021 38.0 1.0 46 30-77 55-107 (493)
117 KOG4692|consensus 45.0 4.5 9.7E-05 40.4 -1.4 43 35-78 421-467 (489)
118 KOG4628|consensus 45.0 14 0.00031 37.3 2.1 42 37-78 230-278 (348)
119 KOG1001|consensus 43.6 6.4 0.00014 43.5 -0.6 40 37-78 455-500 (674)
120 PRK11088 rrmA 23S rRNA methylt 43.3 11 0.00024 36.6 1.0 24 36-59 2-27 (272)
121 KOG0826|consensus 43.0 8.7 0.00019 38.1 0.2 44 34-77 298-345 (357)
122 COG4306 Uncharacterized protei 43.0 8 0.00017 32.9 -0.0 21 226-246 29-50 (160)
123 KOG2932|consensus 42.3 15 0.00031 36.3 1.6 70 29-104 82-154 (389)
124 KOG4739|consensus 41.9 14 0.00031 35.1 1.5 33 215-247 15-49 (233)
125 COG5219 Uncharacterized conser 41.6 4.3 9.4E-05 45.5 -2.2 48 31-78 1464-1523(1525)
126 PF14445 Prok-RING_2: Prokaryo 41.6 4.6 0.0001 28.7 -1.4 41 35-75 6-49 (57)
127 PF04606 Ogr_Delta: Ogr/Delta- 40.4 15 0.00032 25.7 1.0 38 69-108 1-38 (47)
128 KOG1645|consensus 40.3 9.4 0.0002 39.0 -0.0 42 36-77 4-55 (463)
129 PF05502 Dynactin_p62: Dynacti 38.4 20 0.00044 38.1 2.2 69 33-108 2-97 (483)
130 TIGR00622 ssl1 transcription f 38.1 48 0.001 27.9 3.9 38 37-74 56-110 (112)
131 PF13240 zinc_ribbon_2: zinc-r 38.1 18 0.0004 21.3 1.0 17 228-244 2-22 (23)
132 KOG0823|consensus 37.8 12 0.00027 35.3 0.4 33 215-247 57-96 (230)
133 PF00301 Rubredoxin: Rubredoxi 37.6 14 0.0003 26.1 0.5 18 28-45 26-43 (47)
134 PF01363 FYVE: FYVE zinc finge 37.3 19 0.00042 27.0 1.3 32 35-66 8-42 (69)
135 PF01428 zf-AN1: AN1-like Zinc 36.3 21 0.00046 24.4 1.3 32 39-71 1-36 (43)
136 cd00350 rubredoxin_like Rubred 35.9 32 0.00069 22.0 2.0 9 68-76 18-26 (33)
137 PF08209 Sgf11: Sgf11 (transcr 35.5 23 0.0005 23.0 1.3 23 123-149 4-26 (33)
138 smart00154 ZnF_AN1 AN1-like Zi 35.5 23 0.00049 23.8 1.3 23 39-62 1-25 (39)
139 PF13248 zf-ribbon_3: zinc-rib 35.3 22 0.00047 21.5 1.1 20 226-245 3-26 (26)
140 PF02891 zf-MIZ: MIZ/SP-RING z 34.9 11 0.00024 26.8 -0.3 40 37-76 3-50 (50)
141 PF10367 Vps39_2: Vacuolar sor 34.9 26 0.00056 28.4 1.9 35 32-66 74-109 (109)
142 KOG2932|consensus 34.4 9.9 0.00022 37.4 -0.8 57 222-284 108-167 (389)
143 PF14569 zf-UDP: Zinc-binding 34.0 11 0.00025 29.3 -0.4 43 36-78 9-62 (80)
144 COG5175 MOT2 Transcriptional r 31.8 8.9 0.00019 38.1 -1.6 32 215-246 28-64 (480)
145 PF13894 zf-C2H2_4: C2H2-type 31.5 40 0.00088 18.7 1.8 18 301-318 6-24 (24)
146 smart00647 IBR In Between Ring 30.8 30 0.00066 25.1 1.5 30 38-67 20-58 (64)
147 PRK04023 DNA polymerase II lar 30.2 52 0.0011 37.8 3.6 42 35-78 625-674 (1121)
148 cd00065 FYVE FYVE domain; Zinc 29.4 28 0.00061 24.8 1.1 29 38-66 4-35 (57)
149 KOG1785|consensus 29.4 14 0.00031 37.6 -0.7 35 212-246 376-416 (563)
150 KOG4265|consensus 29.1 17 0.00037 36.5 -0.2 26 222-247 307-337 (349)
151 COG1773 Rubredoxin [Energy pro 28.4 53 0.0011 24.0 2.3 31 14-44 14-44 (55)
152 COG1645 Uncharacterized Zn-fin 28.2 30 0.00064 30.0 1.1 24 37-65 29-52 (131)
153 COG4357 Zinc finger domain con 28.2 28 0.00061 28.3 0.9 23 225-247 62-92 (105)
154 KOG1734|consensus 28.0 15 0.00032 35.6 -0.9 44 35-78 223-281 (328)
155 PF06677 Auto_anti-p27: Sjogre 27.8 31 0.00068 23.5 1.0 23 37-63 18-40 (41)
156 PF15616 TerY-C: TerY-C metal 26.9 40 0.00087 29.2 1.7 46 30-78 71-116 (131)
157 COG3813 Uncharacterized protei 26.5 31 0.00068 26.5 0.8 27 52-78 24-52 (84)
158 PRK00420 hypothetical protein; 26.2 37 0.00081 28.6 1.3 26 37-66 24-49 (112)
159 PF11023 DUF2614: Protein of u 25.9 43 0.00093 28.1 1.6 26 226-251 70-101 (114)
160 PF13465 zf-H2C2_2: Zinc-finge 25.9 92 0.002 18.6 2.7 23 141-163 1-24 (26)
161 KOG4362|consensus 25.8 17 0.00038 39.8 -0.9 45 33-78 18-69 (684)
162 COG5243 HRD1 HRD ubiquitin lig 25.0 29 0.00062 35.2 0.5 48 29-77 279-344 (491)
163 PF01286 XPA_N: XPA protein N- 24.5 50 0.0011 21.6 1.4 31 35-65 2-32 (34)
164 smart00064 FYVE Protein presen 24.5 43 0.00092 25.0 1.3 30 37-66 11-43 (68)
165 KOG2272|consensus 24.4 53 0.0012 31.5 2.2 44 34-78 161-206 (332)
166 PF03604 DNA_RNApol_7kD: DNA d 24.3 54 0.0012 21.1 1.5 9 38-46 2-10 (32)
167 PRK09678 DNA-binding transcrip 23.9 57 0.0012 25.2 1.9 45 69-115 3-47 (72)
168 KOG1100|consensus 23.9 45 0.00098 31.3 1.6 23 222-244 175-198 (207)
169 PRK14714 DNA polymerase II lar 23.8 82 0.0018 37.2 3.8 41 36-78 667-720 (1337)
170 PHA00616 hypothetical protein 23.7 52 0.0011 22.8 1.5 32 123-158 1-34 (44)
171 KOG2817|consensus 23.6 25 0.00053 35.9 -0.2 42 33-75 331-382 (394)
172 KOG2807|consensus 23.5 58 0.0013 32.5 2.3 37 39-75 333-375 (378)
173 PRK14892 putative transcriptio 23.2 57 0.0012 26.8 1.9 35 31-66 16-51 (99)
174 PF06906 DUF1272: Protein of u 22.1 43 0.00093 24.5 0.8 41 38-78 7-52 (57)
175 COG5574 PEX10 RING-finger-cont 21.8 23 0.00051 34.2 -0.7 27 221-247 231-263 (271)
176 KOG1571|consensus 21.3 23 0.0005 35.7 -1.0 27 221-247 321-348 (355)
177 cd00729 rubredoxin_SM Rubredox 21.2 84 0.0018 20.3 2.0 9 68-76 19-27 (34)
178 PF09237 GAGA: GAGA factor; I 21.1 29 0.00063 24.9 -0.2 19 236-254 25-45 (54)
179 PF09297 zf-NADH-PPase: NADH p 20.3 29 0.00062 22.0 -0.3 19 57-75 3-29 (32)
180 PLN02189 cellulose synthase 20.2 55 0.0012 37.8 1.6 42 37-78 35-87 (1040)
181 PLN02436 cellulose synthase A 20.1 56 0.0012 37.9 1.6 42 37-78 37-89 (1094)
182 PLN02638 cellulose synthase A 20.0 56 0.0012 37.9 1.6 41 38-78 19-70 (1079)
No 1
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.
Probab=100.00 E-value=5.9e-40 Score=305.84 Aligned_cols=196 Identities=44% Similarity=0.871 Sum_probs=155.0
Q ss_pred cccHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCCCCccCCCCCCCcccccChhHHHHHhhhccCcceeecCc
Q psy17006 248 IRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGE 327 (446)
Q Consensus 248 ~r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~~Cp~~~~~C~~~g~~~~l~~H~~~~H~~~~~~~~~ 327 (446)
+||++||+++.++.+||+|+..||++.+++.++.+||++|+|+|+.||+++.+|+|+|..++|..|+.+.|.+.++..+.
T Consensus 1 iR~~alE~v~~~~~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~CP~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~ 80 (198)
T PF03145_consen 1 IRNRALEKVAESIKFPCKNAKYGCTETFPYSEKREHEEECPFRPCSCPFPGSGCDWQGSYKELLDHLRDKHSWNVTDNGT 80 (198)
T ss_dssp --------------EE-CCGGGT---EE-GGGHHHHHHT-TTSEEE-SSSSTT---EEECCCHHHHHHHHTTTSEEEESS
T ss_pred CCcHHHHHHHhhceecCCCCCCCCcccccccChhhHhccCCCcCCcCCCCCCCccccCCHHHHHHHHHHHCCCccccCcc
Confidence 58999999999999999999999999999999999999999999999998889999999999999999999998765554
Q ss_pred -eEEEeeeccccccceeEEEEe-eecceEEEEEEEeecccCceeEEEEEEEeCCcccccccEEEEEEecCCceEEEEecc
Q psy17006 328 -DIVFLATDINLAGAVDWVMMQ-SCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATP 405 (446)
Q Consensus 328 -~~~f~~~~~~~~~~~~~~~~~-~~~g~~Fll~~~~~~~~~~~~~~~~v~~iG~~~~a~~f~Yel~v~~~~r~l~~~~~~ 405 (446)
.+.|...+.+..+..+|++++ ++||++|+|++.++...+..+++++|+++|++++|++|+|+|++.+++|+|+|++.|
T Consensus 81 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~F~l~~~~~~~~~~~v~~~~v~~~G~~~~a~~f~Yel~~~~~~rkl~~~~~p 160 (198)
T PF03145_consen 81 FSISFLHSDINSVESPDWVLVQFSCFGKLFLLYVQKFELEGNAVYFAVVCYIGPAEEASNFSYELEVRSNGRKLTWQSFP 160 (198)
T ss_dssp -EEEEEECTTT-SSSEEEEEEE-EETTEEEEEEEEEEEEETEEEEEEEEEESS-HHHHTTEEEEEEEEETTEEEEEEE--
T ss_pred ceEEEeeecccccCCceEEEeecccCCccEEEEEEEEccCCceEEEEEEEEccCchhhhceEEEEEEecCCcEEEEEEcC
Confidence 577888777766778999988 999999999999877667788889999999999999999999999999999999999
Q ss_pred cchhhhhhhhhcCCCEEEEehhhHhhhhcCCceEEEEE
Q psy17006 406 RSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVT 443 (446)
Q Consensus 406 ~s~~~~~~~~~~~~dcl~i~~~~~~~f~~~~~l~~~v~ 443 (446)
+|++++.++++++.||+++..+++++|++||+|.|+||
T Consensus 161 ~si~~~~~~~~~~~d~li~~~~~~~~f~~~~~L~~~v~ 198 (198)
T PF03145_consen 161 RSIREDIDDAIESRDCLIINENAAQFFSEDGNLRYRVT 198 (198)
T ss_dssp EETTT-SHHHHHCT-SEEEEHHHHHHHECTTEEEEEEE
T ss_pred cchhhhHHhhccCCcEEEEchHHHHhcCCCCeEEEEeC
Confidence 99999999999999999999999999999999999997
No 2
>KOG3002|consensus
Probab=100.00 E-value=1.5e-39 Score=315.74 Aligned_cols=231 Identities=41% Similarity=0.756 Sum_probs=212.6
Q ss_pred ccceeeeccCcccccCcccCC-CCCCCCCCCCCccccHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCCCCcc
Q psy17006 215 AEHFTYCQSGHLVCSNCRPKL-SCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYH 293 (446)
Q Consensus 215 ~~~~~~C~~gh~~C~~C~~~~-~~Cp~Cr~~~~~~r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~~ 293 (446)
..+++||+|||++|++|+.++ ..||+||.+++.+|++++|++++.+.+||+|..+||++.++|.+..+||+.|.|+|+.
T Consensus 59 ~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~GC~~~~~Y~~~~~HE~~C~f~~~~ 138 (299)
T KOG3002|consen 59 SPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLGCTKSFPYGEKSKHEKVCEFRPCS 138 (299)
T ss_pred cccceecCCCcEehhhhhhhhcccCCccccccccHHHHHHHHHHHhceecccccccCCceeeccccccccccccccCCcC
Confidence 467899999999999999665 7999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccChhHHHHHhhhccCcce-eecCceEEEeeeccccccceeEEEEe-eecceEEEEEEEeecccCc-eeE
Q psy17006 294 CPCPGASCKWSGALDQVMGHLNQSHKTIT-TLQGEDIVFLATDINLAGAVDWVMMQ-SCFGHHFMLVLEKQEIDGR-QHF 370 (446)
Q Consensus 294 Cp~~~~~C~~~g~~~~l~~H~~~~H~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~g~~Fll~~~~~~~~~~-~~~ 370 (446)
||.++..|+|+|.+++|+.|+...|+..+ ++.+.+++|.+++.++.+..+|++.+ .++|..|.+++..+...+. .+|
T Consensus 139 CP~p~~~C~~~G~~~~l~~H~~~~hk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~y 218 (299)
T KOG3002|consen 139 CPVPGAECKYTGSYKDLYAHLNDTHKSDIITLTGFDFVFVATDENLLGAATWTLKTSVCFGREFGLLFEVQCFREPHGVY 218 (299)
T ss_pred CCCCcccCCccCcHHHHHHHHHhhChhhhhhccccceecccCCccccccchhheeeeecCcEEEeeeeeehhhcCCCceE
Confidence 99999999999999999999999999844 67888999999999999999996544 4999999999998776655 667
Q ss_pred EEEEEEeCCcccccccEEEEEEecCCceEEEEecccchhhhhhhhhcCCCEEEEehhhHhhhhcCC-ceEEEEEEe
Q psy17006 371 FAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNK-NLGINVTIA 445 (446)
Q Consensus 371 ~~~v~~iG~~~~a~~f~Yel~v~~~~r~l~~~~~~~s~~~~~~~~~~~~dcl~i~~~~~~~f~~~~-~l~~~v~i~ 445 (446)
+++++.+|.+++|++|+|+|++++.+++|+|++.++|++++++.+.+..|+++||.+++++|..++ +|.|++|++
T Consensus 219 ~tv~~i~~~~~e~~~fsy~L~~~~~~~klt~~s~~~s~~~kvs~~~p~~dfm~ip~~~~~~~~~~~~~l~i~~~~~ 294 (299)
T KOG3002|consen 219 VTVNRIAPSAPEAGEFSYSLALGGSGRKLTWQSPPRSIIQKVSKVRPEDDFMLIPRSLLCLFSLLKMELKIRVTGR 294 (299)
T ss_pred EEeehhccCCCcccccceeeecCCCCceEeecCCcceeecccceeccCCCceeccHHHhhcccccCCceeeccchh
Confidence 777777799999999999999999999999999999999999999999999999999999998666 899999873
No 3
>cd03829 Sina Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-medi
Probab=100.00 E-value=2.7e-34 Score=236.61 Aligned_cols=125 Identities=82% Similarity=1.272 Sum_probs=120.4
Q ss_pred eeecCceEEEeeeccccccceeEEEEeeecceEEEEEEEeecc-cCceeEEEEEEEeCCcccccccEEEEEEecCCceEE
Q psy17006 322 TTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLT 400 (446)
Q Consensus 322 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~~Fll~~~~~~~-~~~~~~~~~v~~iG~~~~a~~f~Yel~v~~~~r~l~ 400 (446)
.+++|++++|+++|++++++++|+++|+|||+||+|++++++. .+.++|||+|++||++.+|.+|+|.||+++++|||+
T Consensus 2 ~~~~G~di~fl~t~~~~~~a~~w~mv~sCfG~~F~L~~Ek~~l~~~~~~y~A~~~~iG~~~eA~nf~Y~Lel~~n~RkL~ 81 (127)
T cd03829 2 TTLQGEDIVFLATDINLPGATDWVMMQSCFGHHFMLVLEKQELYEGHQQFFAFVQLIGTEKQAENFTYRLELNGNRRRLT 81 (127)
T ss_pred ccccCccEEEEecCCCCccceeeeehhhhcCceEEEEEehhhhcCCcHHHHHHHHHHcCHhHHhcceEEEEEcCCCcEEE
Confidence 3578999999999999999999999999999999999999997 778899999999999999999999999999999999
Q ss_pred EEecccchhhhhhhhhcCCCEEEEehhhHhhhhcCCceEEEEEEeC
Q psy17006 401 WEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKNLGINVTIAT 446 (446)
Q Consensus 401 ~~~~~~s~~~~~~~~~~~~dcl~i~~~~~~~f~~~~~l~~~v~i~~ 446 (446)
|+++||||+|++.+++++.|||+|+.++|++|++||+|.++|+|+.
T Consensus 82 we~~PRSIrds~~~~~~~~D~Lii~~~~A~~Fs~~g~l~l~v~It~ 127 (127)
T cd03829 82 WEATPRSIREGHASVIDNSDCLVFDTSIAQLFSENGNLGINVTISG 127 (127)
T ss_pred eecCCccHHHhhHHHhhcCcceEEechHhhhccCCCccEEEEEecC
Confidence 9999999999999999999999999999999999999999999974
No 4
>KOG3002|consensus
Probab=99.96 E-value=3.8e-30 Score=250.11 Aligned_cols=188 Identities=46% Similarity=0.884 Sum_probs=172.9
Q ss_pred cCCCCceecccccCcCcCccccccccceeccCcccC-CCCCCCCCCCCccccchHHHHHhhhccccccccCCCCeeeecC
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-LSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLH 109 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~-~~~CP~Cr~~~~~~~~~~~e~~~~~l~v~C~~~~~GC~~~~~~ 109 (446)
..+.+.|.||||...+.+|++||.+||+.|++|..+ ...||.||.+++.+|++++|++++++.|+|||...||+|+++|
T Consensus 43 ~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~GC~~~~~Y 122 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLGCTKSFPY 122 (299)
T ss_pred ccchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccHHHHHHHHHHHhceecccccccCCceeecc
Confidence 345688999999999999999999999999999955 5799999999999999999999999999999999999999999
Q ss_pred CChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhhcCCC-cceecCccEEEEeeccCcccccceEEEee-eccceE
Q psy17006 110 TEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKT-ITTLQGEDIVFLATDINLAGAVDWVMMQS-CFGHHF 187 (446)
Q Consensus 110 ~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~-~~~c~~c~~~f~~~~~~~~~~~~~~~~~~-c~~~~f 187 (446)
.+..+||+.|.|++..||.++..|+|.|..++|..|+...|+. +.+..+-++.+.++++++.++.+|++.++ |++++|
T Consensus 123 ~~~~~HE~~C~f~~~~CP~p~~~C~~~G~~~~l~~H~~~~hk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (299)
T KOG3002|consen 123 GEKSKHEKVCEFRPCSCPVPGAECKYTGSYKDLYAHLNDTHKSDIITLTGFDFVFVATDENLLGAATWTLKTSVCFGREF 202 (299)
T ss_pred ccccccccccccCCcCCCCCcccCCccCcHHHHHHHHHhhChhhhhhccccceecccCCccccccchhheeeeecCcEEE
Confidence 9999999999999999999988999999999999999999985 77888889999999999999999987776 999999
Q ss_pred EEEEEeeecc-cchhhHHHHHHhcCcccccce
Q psy17006 188 MLVLEKQEID-GRQHFFAIVQLIGSRKQAEHF 218 (446)
Q Consensus 188 ~~~~~k~~~~-~~~~~~~~~q~~g~~~~~~~~ 218 (446)
+++++++... ....|+.+.+.+|+.+++..+
T Consensus 203 ~~~~~~q~~~~~~~~y~tv~~i~~~~~e~~~f 234 (299)
T KOG3002|consen 203 GLLFEVQCFREPHGVYVTVNRIAPSAPEAGEF 234 (299)
T ss_pred eeeeeehhhcCCCceEEEeehhccCCCccccc
Confidence 9999998864 347888888888998888664
No 5
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.
Probab=99.83 E-value=2.1e-21 Score=180.97 Aligned_cols=139 Identities=43% Similarity=0.888 Sum_probs=100.7
Q ss_pred ccchHHHHHhhhccccccccCCCCeeeecCCChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhhcCCCcceecCc
Q psy17006 80 IRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGE 159 (446)
Q Consensus 80 ~~~~~~e~~~~~l~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~~~~c~~c 159 (446)
+||++||+++.++++||+|+..||++.+++.++.+||++|+|+|+.||.++.+|+|.|..++|.+|+...|...+.-...
T Consensus 1 iR~~alE~v~~~~~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~CP~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~ 80 (198)
T PF03145_consen 1 IRNRALEKVAESIKFPCKNAKYGCTETFPYSEKREHEEECPFRPCSCPFPGSGCDWQGSYKELLDHLRDKHSWNVTDNGT 80 (198)
T ss_dssp --------------EE-CCGGGT---EE-GGGHHHHHHT-TTSEEE-SSSSTT---EEECCCHHHHHHHHTTTSEEEESS
T ss_pred CCcHHHHHHHhhceecCCCCCCCCcccccccChhhHhccCCCcCCcCCCCCCCccccCCHHHHHHHHHHHCCCccccCcc
Confidence 58999999999999999999999999999999999999999999999997779999999999999999999876655544
Q ss_pred -cEEEEeeccCcccccceEEEe-eeccceEEEEEEeeecccchhhHHHHHHhcCcccccce
Q psy17006 160 -DIVFLATDINLAGAVDWVMMQ-SCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHF 218 (446)
Q Consensus 160 -~~~f~~~~~~~~~~~~~~~~~-~c~~~~f~~~~~k~~~~~~~~~~~~~q~~g~~~~~~~~ 218 (446)
...|...+.+.++..+|++++ .|+|++|++++++.+..+...|++.+|++|++.++..+
T Consensus 81 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~F~l~~~~~~~~~~~v~~~~v~~~G~~~~a~~f 141 (198)
T PF03145_consen 81 FSISFLHSDINSVESPDWVLVQFSCFGKLFLLYVQKFELEGNAVYFAVVCYIGPAEEASNF 141 (198)
T ss_dssp -EEEEEECTTT-SSSEEEEEEE-EETTEEEEEEEEEEEEETEEEEEEEEEESS-HHHHTTE
T ss_pred ceEEEeeecccccCCceEEEeecccCCccEEEEEEEEccCCceEEEEEEEEccCchhhhce
Confidence 567888888877888999998 99999999999888766788888899999999998764
No 6
>KOG0297|consensus
Probab=99.47 E-value=7.1e-14 Score=142.75 Aligned_cols=126 Identities=22% Similarity=0.448 Sum_probs=110.4
Q ss_pred cCCCCceecccccCcCcCcccc-ccccceeccCcccCC----CCCCCCCCCCccc----cchHHHHHhhhccccccccCC
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQ-CQSGHLVCSNCRPKL----SCCSTCRGPLGNI----RNLAMEKVAETVTFPCRYQMN 101 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~q-C~~GH~~C~~C~~~~----~~CP~Cr~~~~~~----~~~~~e~~~~~l~v~C~~~~~ 101 (446)
..+++++.|++|..++.+|+ | ..|||.||..|+... ..||.|+..+... ..+++.+++.++.+.|++...
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~-~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c~~~~~ 94 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPV-QTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLPIRCIFASR 94 (391)
T ss_pred CCCcccccCccccccccCCC-CCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcccccccCCC
Confidence 44889999999999999998 5 367999999999875 5899999887642 368889999999999999999
Q ss_pred CCeeeecCCChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhhcCC-CcceecCccEE
Q psy17006 102 GCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHK-TITTLQGEDIV 162 (446)
Q Consensus 102 GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~-~~~~c~~c~~~ 162 (446)
||+|.+++..++.|+..| .+++||+ +|+..+.++++.+|++..+. +...|..|...
T Consensus 95 GC~~~~~l~~~~~Hl~~c--~~~~C~~---~C~~~~~~~d~~~hl~~~C~~~~~~c~~~~~~ 151 (391)
T KOG0297|consen 95 GCRADLELEALQGHLSTC--DPLKCPH---RCGVQVPRDDLEDHLEAECPRRSLKCSLCQSD 151 (391)
T ss_pred CccccccHHHHHhHhccC--CcccCcc---ccccccchHHHHHHHhcccccccccchhhcCc
Confidence 999999999999999999 9999998 59999999999999987775 66777777543
No 7
>cd03829 Sina Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-medi
Probab=99.43 E-value=1.1e-13 Score=114.83 Aligned_cols=67 Identities=85% Similarity=1.348 Sum_probs=62.9
Q ss_pred ceecCccEEEEeeccCcccccceEEEeeeccceEEEEEEeeec-ccchhhHHHHHHhcCcccccceee
Q psy17006 154 TTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLIGSRKQAEHFTY 220 (446)
Q Consensus 154 ~~c~~c~~~f~~~~~~~~~~~~~~~~~~c~~~~f~~~~~k~~~-~~~~~~~~~~q~~g~~~~~~~~~~ 220 (446)
++.+||+..|+++|++++++.+|+|+|+|||+||+|++||+++ ++.|+||+++|+||+.++|+++..
T Consensus 2 ~~~~G~di~fl~t~~~~~~a~~w~mv~sCfG~~F~L~~Ek~~l~~~~~~y~A~~~~iG~~~eA~nf~Y 69 (127)
T cd03829 2 TTLQGEDIVFLATDINLPGATDWVMMQSCFGHHFMLVLEKQELYEGHQQFFAFVQLIGTEKQAENFTY 69 (127)
T ss_pred ccccCccEEEEecCCCCccceeeeehhhhcCceEEEEEehhhhcCCcHHHHHHHHHHcCHhHHhcceE
Confidence 5678999999999999999999999999999999999999999 899999999999999999988643
No 8
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.96 E-value=1.5e-10 Score=121.48 Aligned_cols=149 Identities=21% Similarity=0.347 Sum_probs=114.1
Q ss_pred hccccccccCCCCeeeecCCChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhhcCCCcceecCccEEEEeeccCc
Q psy17006 91 TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDINL 170 (446)
Q Consensus 91 ~l~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~~~~c~~c~~~f~~~~~~~ 170 (446)
.-.+.|+| |.|.++...+..|+..|.|..+.||+. +|+....++++.+|. .|+.|+..|...+
T Consensus 405 ~~~V~C~N----C~~~i~l~~l~lHe~~C~r~~V~Cp~~--~Cg~v~~r~el~~H~--------~C~~Cgk~f~~s~--- 467 (567)
T PLN03086 405 VDTVECRN----CKHYIPSRSIALHEAYCSRHNVVCPHD--GCGIVLRVEEAKNHV--------HCEKCGQAFQQGE--- 467 (567)
T ss_pred CCeEECCC----CCCccchhHHHHHHhhCCCcceeCCcc--cccceeeccccccCc--------cCCCCCCccchHH---
Confidence 34678998 999999999999999999999999974 799999999999996 4777865442100
Q ss_pred ccccceEEEeeeccceEEEEEEeeecccchhhHHHHHHhcCcccccceeeeccCcccccCcccCCCCCCCCCCCCCc-cc
Q psy17006 171 AGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQLIGSRKQAEHFTYCQSGHLVCSNCRPKLSCCSTCRGPLGN-IR 249 (446)
Q Consensus 171 ~~~~~~~~~~~c~~~~f~~~~~k~~~~~~~~~~~~~q~~g~~~~~~~~~~C~~gh~~C~~C~~~~~~Cp~Cr~~~~~-~r 249 (446)
..+|...| .....|| |...+.. ..
T Consensus 468 -------------------------------------------LekH~~~~-----------Hkpv~Cp-Cg~~~~R~~L 492 (567)
T PLN03086 468 -------------------------------------------MEKHMKVF-----------HEPLQCP-CGVVLEKEQM 492 (567)
T ss_pred -------------------------------------------HHHHHHhc-----------CCCccCC-CCCCcchhHH
Confidence 01222222 1234566 6543321 11
Q ss_pred cHHHHHHHhhcccCcccCCCCCeEeecCC-----------CchhHHhhCCCCCccCCCCCCCcccccChhHHHHHhhhcc
Q psy17006 250 NLAMEKVAETVTFPCRYQMNGCNVVLLHT-----------EKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSH 318 (446)
Q Consensus 250 ~~~~e~~c~~~~~~C~~~~~GC~~~~~~~-----------~l~~He~~C~~~~~~Cp~~~~~C~~~g~~~~l~~H~~~~H 318 (446)
..|+...|+.-++.|+| |...++++ .|..|+..|.-+++.|. .|+-.....+|..|+..-|
T Consensus 493 ~~H~~thCp~Kpi~C~f----C~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~----~Cgk~Vrlrdm~~H~~~~h 564 (567)
T PLN03086 493 VQHQASTCPLRLITCRF----CGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCD----SCGRSVMLKEMDIHQIAVH 564 (567)
T ss_pred HhhhhccCCCCceeCCC----CCCccccCccccchhhhhhhHHHHHHhcCCcceEcc----ccCCeeeehhHHHHHHHhh
Confidence 24666789999999998 99888644 79999999999999996 5999999999999999888
Q ss_pred C
Q psy17006 319 K 319 (446)
Q Consensus 319 ~ 319 (446)
.
T Consensus 565 ~ 565 (567)
T PLN03086 565 Q 565 (567)
T ss_pred c
Confidence 5
No 9
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=98.54 E-value=2.8e-08 Score=74.18 Aligned_cols=56 Identities=25% Similarity=0.496 Sum_probs=42.0
Q ss_pred HHhhcccCcccCCCCCeEeecCCCchhHHh-hCCCCCccCCCCCCCcccccChhHHHHH
Q psy17006 256 VAETVTFPCRYQMNGCNVVLLHTEKPEHED-ACEYRPYHCPCPGASCKWSGALDQVMGH 313 (446)
Q Consensus 256 ~c~~~~~~C~~~~~GC~~~~~~~~l~~He~-~C~~~~~~Cp~~~~~C~~~g~~~~l~~H 313 (446)
.|+...++||+ .||...++|.+|..|++ +|+++++.|+|...||++.+.+.+|.+|
T Consensus 4 ~C~~~~v~C~~--~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H 60 (60)
T PF02176_consen 4 ECPFRPVPCPN--GCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH 60 (60)
T ss_dssp TSTTSEEE-TT----S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred cCCCCEeeCCC--CCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence 38889999998 36667899999999998 9999999999999999999999999988
No 10
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.38 E-value=6.6e-08 Score=71.63 Aligned_cols=46 Identities=33% Similarity=0.800 Sum_probs=26.2
Q ss_pred CCCCceecccccCcCcCccccccccceeccCcccCC--CCCCCCCCCC
Q psy17006 32 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCSTCRGPL 77 (446)
Q Consensus 32 ~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~CP~Cr~~~ 77 (446)
.|++.+.|++|.++|+.||..-.|.|.||+.|+..- ..||+|..|.
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChH
Confidence 356789999999999999854457999999999874 6899999976
No 11
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=98.15 E-value=1.1e-06 Score=65.61 Aligned_cols=53 Identities=26% Similarity=0.527 Sum_probs=37.3
Q ss_pred hccccccccCCCCeeeecCCChhhHhh-hCCCccccCCCCCCCCccccChhHHHHH
Q psy17006 91 TVTFPCRYQMNGCNVVLLHTEKPEHED-ACEYRPYHCPCPGASCKWSGALDQVMGH 145 (446)
Q Consensus 91 ~l~v~C~~~~~GC~~~~~~~~~~~H~~-~C~~~~v~Cp~~~~~C~~~~~~~~l~~H 145 (446)
...|.|||. ||...+...++.+|++ +|++++++|++...||++++.+.+|.+|
T Consensus 7 ~~~v~C~~~--cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H 60 (60)
T PF02176_consen 7 FRPVPCPNG--CCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH 60 (60)
T ss_dssp TSEEE-TT----S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred CCEeeCCCC--CcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence 357889873 6778899999999997 9999999999866789999999999887
No 12
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.09 E-value=1.9e-06 Score=64.80 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=45.7
Q ss_pred ceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhh
Q psy17006 36 LFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAET 91 (446)
Q Consensus 36 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~ 91 (446)
.|.||||.+++.+|+ .-.+||+||..|+.+. ..||.|++++.. ++|..+++.+++
T Consensus 1 ~~~Cpi~~~~~~~Pv-~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPV-ILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCE-ECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 378999999999998 4467999999999864 589999998852 578888887764
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.08 E-value=7e-07 Score=61.68 Aligned_cols=34 Identities=35% Similarity=1.037 Sum_probs=25.2
Q ss_pred cccccCcCcCccccccccceeccCcccCC--------CCCCCC
Q psy17006 39 CPVCFDYVLPPIIQCQSGHLVCSNCRPKL--------SCCSTC 73 (446)
Q Consensus 39 C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--------~~CP~C 73 (446)
||||.++|.+|+ +-.|||.||.+|+.+. ..||.|
T Consensus 1 CpiC~~~~~~Pv-~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPV-SLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEE-E-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCcc-ccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999998 4456999999999863 257776
No 14
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.07 E-value=2e-06 Score=87.46 Aligned_cols=64 Identities=22% Similarity=0.487 Sum_probs=52.2
Q ss_pred CccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006 29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVT 93 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~ 93 (446)
.-+++++.+.|+||.+++..|+ ...|||.||..|+... ..||.|+.++.. .+|.++++++..++
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~Pv-itpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~ 89 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPV-LTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFK 89 (397)
T ss_pred cccccccccCCCcCchhhhCcc-CCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHH
Confidence 4578899999999999999998 4567999999999852 579999998753 36788888776554
No 15
>KOG0320|consensus
Probab=98.05 E-value=1.8e-06 Score=76.82 Aligned_cols=47 Identities=30% Similarity=0.812 Sum_probs=37.8
Q ss_pred CCCCceecccccCcCcCcc-ccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 32 DLASLFECPVCFDYVLPPI-IQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 32 ~l~~~l~C~iC~~~l~~Pv-~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
.-...+.||||++-+..-+ +...|||+||+.|++.+ ..||+|++.++
T Consensus 127 ~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 3346799999999997533 35678999999999874 58999998775
No 16
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.02 E-value=8.5e-06 Score=86.08 Aligned_cols=118 Identities=21% Similarity=0.345 Sum_probs=85.4
Q ss_pred CccccCCCCCCCCccccChhHHHHHHhhcCCCcceec--CccEEEEeeccCcccccceEEEeeeccceEEEEEEeeeccc
Q psy17006 121 YRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQ--GEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDG 198 (446)
Q Consensus 121 ~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~~~~c~--~c~~~f~~~~~~~~~~~~~~~~~~c~~~~f~~~~~k~~~~~ 198 (446)
-..+.|+| |.|.++...|..|+..|-...+.|. +|+..|...++.
T Consensus 405 ~~~V~C~N----C~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~----------------------------- 451 (567)
T PLN03086 405 VDTVECRN----CKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAK----------------------------- 451 (567)
T ss_pred CCeEECCC----CCCccchhHHHHHHhhCCCcceeCCcccccceeeccccc-----------------------------
Confidence 44678996 9999999999999999888788887 587665421111
Q ss_pred chhhHHHHHHhcCcccccceeeeccCcccccCcccCCCCCCCCCCCCCccc-cHHHHHHHhhcccCcccCCCCCeEeecC
Q psy17006 199 RQHFFAIVQLIGSRKQAEHFTYCQSGHLVCSNCRPKLSCCSTCRGPLGNIR-NLAMEKVAETVTFPCRYQMNGCNVVLLH 277 (446)
Q Consensus 199 ~~~~~~~~q~~g~~~~~~~~~~C~~gh~~C~~C~~~~~~Cp~Cr~~~~~~r-~~~~e~~c~~~~~~C~~~~~GC~~~~~~ 277 (446)
.|. .|+.|...+.... ..|+ ..+ ..++.|+ |+..+.+
T Consensus 452 -------------------------~H~----------~C~~Cgk~f~~s~LekH~-~~~-Hkpv~Cp-----Cg~~~~R 489 (567)
T PLN03086 452 -------------------------NHV----------HCEKCGQAFQQGEMEKHM-KVF-HEPLQCP-----CGVVLEK 489 (567)
T ss_pred -------------------------cCc----------cCCCCCCccchHHHHHHH-Hhc-CCCccCC-----CCCCcch
Confidence 122 5667766665321 1233 334 4778897 8888899
Q ss_pred CCchhHHh-hCCCCCccCCCCCCCcccccC-----------hhHHHHHhhhc
Q psy17006 278 TEKPEHED-ACEYRPYHCPCPGASCKWSGA-----------LDQVMGHLNQS 317 (446)
Q Consensus 278 ~~l~~He~-~C~~~~~~Cp~~~~~C~~~g~-----------~~~l~~H~~~~ 317 (446)
.+|..|.. .|+.+++.|+| |..... ...|..|+...
T Consensus 490 ~~L~~H~~thCp~Kpi~C~f----C~~~v~~g~~~~d~~d~~s~Lt~HE~~C 537 (567)
T PLN03086 490 EQMVQHQASTCPLRLITCRF----CGDMVQAGGSAMDVRDRLRGMSEHESIC 537 (567)
T ss_pred hHHHhhhhccCCCCceeCCC----CCCccccCccccchhhhhhhHHHHHHhc
Confidence 99999975 89999999998 877764 34788998774
No 17
>KOG0287|consensus
Probab=98.00 E-value=8e-07 Score=86.02 Aligned_cols=65 Identities=26% Similarity=0.637 Sum_probs=53.3
Q ss_pred CccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhccc
Q psy17006 29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVTF 94 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~v 94 (446)
.-..|++.|.|.||+++|..|+ ...|||.||+-||.+. +.||+|+.++.. ..|+.++.++.++.+
T Consensus 16 slk~lD~lLRC~IC~eyf~ip~-itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 16 SLKTLDDLLRCGICFEYFNIPM-ITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred hhhhhHHHHHHhHHHHHhcCce-eccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 4478899999999999999998 4567999999999873 799999998863 246777887777654
No 18
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.99 E-value=1.8e-06 Score=78.74 Aligned_cols=46 Identities=33% Similarity=0.777 Sum_probs=38.2
Q ss_pred CCCCceecccccCcCcCccccccccceeccCcccCC--------------------CCCCCCCCCCc
Q psy17006 32 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--------------------SCCSTCRGPLG 78 (446)
Q Consensus 32 ~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--------------------~~CP~Cr~~~~ 78 (446)
++.+.++|+||.+.+.+|+ ...|||.||..|+.++ ..||.||.++.
T Consensus 14 ~~~~~~~CpICld~~~dPV-vT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPV-VTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred cCCCccCCccCCCcCCCcE-EcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 4456799999999999998 4567999999999642 37999999885
No 19
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.96 E-value=1.5e-06 Score=58.99 Aligned_cols=35 Identities=34% Similarity=0.991 Sum_probs=27.9
Q ss_pred cccccCcCcCccccccccceeccCcccCC----CCCCCC
Q psy17006 39 CPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTC 73 (446)
Q Consensus 39 C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~C 73 (446)
|+||.+.+.+|++...|||.||..|+.+. .+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999655667999999999864 578876
No 20
>KOG0823|consensus
Probab=97.75 E-value=1.6e-05 Score=73.88 Aligned_cols=46 Identities=26% Similarity=0.769 Sum_probs=38.9
Q ss_pred CCCCceecccccCcCcCccccccccceeccCcccCC-------CCCCCCCCCCc
Q psy17006 32 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCSTCRGPLG 78 (446)
Q Consensus 32 ~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~ 78 (446)
.-...|.|.||++..++||+. .|||+||=.|+-++ ..||+|+..++
T Consensus 43 ~~~~~FdCNICLd~akdPVvT-lCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDPVVT-LCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCCceeeeeeccccCCCEEe-ecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 445789999999999999954 47999999999875 36899999775
No 21
>KOG0297|consensus
Probab=97.75 E-value=3.3e-05 Score=79.36 Aligned_cols=94 Identities=23% Similarity=0.505 Sum_probs=80.7
Q ss_pred eccCcccccCcccCC----CCCCCCCCCCCcccc----HHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCCCCc
Q psy17006 221 CQSGHLVCSNCRPKL----SCCSTCRGPLGNIRN----LAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPY 292 (446)
Q Consensus 221 C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~~r~----~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~ 292 (446)
=..||.+|..|.... ..||.|+.++..... ..+-++..++++.|.+...||.+.+....+..|+..| .++
T Consensus 38 ~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c~~~~~GC~~~~~l~~~~~Hl~~c--~~~ 115 (391)
T KOG0297|consen 38 TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLPIRCIFASRGCRADLELEALQGHLSTC--DPL 115 (391)
T ss_pred CCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcccccccCCCCccccccHHHHHhHhccC--Ccc
Confidence 367999999999873 489999988765443 4455778899999999999999999999999999999 889
Q ss_pred cCCCCCCCcccccChhHHHHHhhhccC
Q psy17006 293 HCPCPGASCKWSGALDQVMGHLNQSHK 319 (446)
Q Consensus 293 ~Cp~~~~~C~~~g~~~~l~~H~~~~H~ 319 (446)
+||.. |..++.+.++.+|++....
T Consensus 116 ~C~~~---C~~~~~~~d~~~hl~~~C~ 139 (391)
T KOG0297|consen 116 KCPHR---CGVQVPRDDLEDHLEAECP 139 (391)
T ss_pred cCccc---cccccchHHHHHHHhcccc
Confidence 99964 9999999999999865554
No 22
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.71 E-value=6.7e-06 Score=59.01 Aligned_cols=43 Identities=35% Similarity=0.895 Sum_probs=34.4
Q ss_pred CceecccccCcCcCccccccccce-eccCcccCC----CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
++..|+||.+...++++ -.|||. +|..|+.++ ..||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVL-LPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEE-ETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEE-eCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 35789999999999873 356999 999999886 79999999875
No 23
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.68 E-value=7.9e-06 Score=77.71 Aligned_cols=118 Identities=20% Similarity=0.392 Sum_probs=78.2
Q ss_pred CCccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCccc--c-chHHH-----------HHh
Q psy17006 28 GTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGNI--R-NLAME-----------KVA 89 (446)
Q Consensus 28 ~~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~~--~-~~~~e-----------~~~ 89 (446)
+.-..|+..+.|-||...+..|+ ...|||.||+-||... +.||+||.+.... | +..++ -+.
T Consensus 17 PSL~~LDs~lrC~IC~~~i~ip~-~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r~~l~ 95 (391)
T COG5432 17 PSLKGLDSMLRCRICDCRISIPC-ETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHARNRDLLR 95 (391)
T ss_pred cchhcchhHHHhhhhhheeecce-ecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhhccHHHH
Confidence 34567888999999999999997 5667999999999873 7899999865311 1 11111 123
Q ss_pred hhcccccc-----ccCCCCeeeecCCChh--------hHh------------------hhCCCccccCCCCCCCCccccC
Q psy17006 90 ETVTFPCR-----YQMNGCNVVLLHTEKP--------EHE------------------DACEYRPYHCPCPGASCKWSGA 138 (446)
Q Consensus 90 ~~l~v~C~-----~~~~GC~~~~~~~~~~--------~H~------------------~~C~~~~v~Cp~~~~~C~~~~~ 138 (446)
..|++.|+ +.+.-|+|.....+-. +-+ +.=.-..+.|| .|.--.+
T Consensus 96 ~~L~~~~~~p~p~~ee~p~~~E~v~~~dS~S~~~~~eD~~~~~sS~~~iAKkt~~D~~KrK~E~l~~CP----~C~~~~P 171 (391)
T COG5432 96 KVLESLCRLPRPIKEERPCRWETVIAQDSASGDEEWEDDLASNSSPASIAKKTSRDSKKRKREDLVHCP----ACSNLVP 171 (391)
T ss_pred HHHhcccCCCCchhhcCCCchhheeccccccccchhhhhhhhccChHHHHhhhhhHHHHhHHHhhhcCc----hhhccCc
Confidence 44566663 3456777754432110 000 00002347898 5999999
Q ss_pred hhHHHHHHhhcC
Q psy17006 139 LDQVMGHLNQSH 150 (446)
Q Consensus 139 ~~~l~~H~~~~h 150 (446)
.+++..|+..|=
T Consensus 172 ~~~i~~HLD~CL 183 (391)
T COG5432 172 HNQINQHLDSCL 183 (391)
T ss_pred hHHHHHHHHHHh
Confidence 999999999874
No 24
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.62 E-value=2.1e-05 Score=61.15 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=43.2
Q ss_pred CCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhc
Q psy17006 34 ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETV 92 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l 92 (446)
.+.|.|||++++|.+|| .-.+||+|+.+++.+. ..||.+++++.. .+|..+++.|..+
T Consensus 2 P~~f~CpIt~~lM~dPV-i~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~ 67 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPV-ILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEW 67 (73)
T ss_dssp SGGGB-TTTSSB-SSEE-EETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCce-eCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHH
Confidence 46799999999999998 4567999999999863 579999998863 5889999888765
No 25
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.50 E-value=2.5e-05 Score=54.46 Aligned_cols=38 Identities=32% Similarity=0.774 Sum_probs=29.8
Q ss_pred ecccccCcC--cCccccccccceeccCcccCCC----CCCCCCC
Q psy17006 38 ECPVCFDYV--LPPIIQCQSGHLVCSNCRPKLS----CCSTCRG 75 (446)
Q Consensus 38 ~C~iC~~~l--~~Pv~qC~~GH~~C~~C~~~~~----~CP~Cr~ 75 (446)
+|++|.+.+ ..+.+...|||+||..|+.++. .||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 599999999 2232345669999999999865 8999985
No 26
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.36 E-value=2.7e-05 Score=54.22 Aligned_cols=37 Identities=27% Similarity=0.843 Sum_probs=29.2
Q ss_pred ecccccCcCc--CccccccccceeccCcccCC----CCCCCCC
Q psy17006 38 ECPVCFDYVL--PPIIQCQSGHLVCSNCRPKL----SCCSTCR 74 (446)
Q Consensus 38 ~C~iC~~~l~--~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr 74 (446)
+|+||.+.+. +.++...|||.||.+|+.++ ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999995 34445668999999999874 6899997
No 27
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.34 E-value=5.8e-05 Score=71.75 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=35.8
Q ss_pred CCceecccccCcCcCcc-------ccccccceeccCcccCC----CCCCCCCCCCcc
Q psy17006 34 ASLFECPVCFDYVLPPI-------IQCQSGHLVCSNCRPKL----SCCSTCRGPLGN 79 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv-------~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~ 79 (446)
.+..+|+||.+.+.++. ....|||.||..|+.++ ..||+||.++..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence 45689999999876531 13456999999999764 689999998864
No 28
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.28 E-value=6.3e-05 Score=51.39 Aligned_cols=35 Identities=34% Similarity=0.920 Sum_probs=28.6
Q ss_pred cccccCcCcCccccccccceeccCcccCC------CCCCCC
Q psy17006 39 CPVCFDYVLPPIIQCQSGHLVCSNCRPKL------SCCSTC 73 (446)
Q Consensus 39 C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~------~~CP~C 73 (446)
|+||.+++.+|+..-.|||.||..|+.++ ..||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999999999744456999999999763 468876
No 29
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.10 E-value=0.00012 Score=50.14 Aligned_cols=40 Identities=35% Similarity=0.999 Sum_probs=31.4
Q ss_pred ecccccCcCcCccccccccceeccCcccC-----CCCCCCCCCCC
Q psy17006 38 ECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----LSCCSTCRGPL 77 (446)
Q Consensus 38 ~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~-----~~~CP~Cr~~~ 77 (446)
.|+||.+.+..|+..-.|||.||..|+.. ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999999977763334799999999974 25799998753
No 30
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.01 E-value=0.00034 Score=68.61 Aligned_cols=55 Identities=29% Similarity=0.671 Sum_probs=39.4
Q ss_pred ceecccccC--cCcCcc--ccccccceeccCcccCC-----CCCCCCCCCCcc-------ccchHHHHHhh
Q psy17006 36 LFECPVCFD--YVLPPI--IQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN-------IRNLAMEKVAE 90 (446)
Q Consensus 36 ~l~C~iC~~--~l~~Pv--~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~-------~~~~~~e~~~~ 90 (446)
...||+|.. ++.+-+ +.-.|||.||.+|+..+ ..||.|+.++.. +.+.++++.+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~ 73 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVD 73 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHH
Confidence 478999998 444432 22257999999999873 479999998752 35677777654
No 31
>KOG0311|consensus
Probab=96.94 E-value=3.9e-05 Score=75.25 Aligned_cols=65 Identities=18% Similarity=0.373 Sum_probs=50.5
Q ss_pred CCccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCccc----cchHHHHHhhhc
Q psy17006 28 GTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGNI----RNLAMEKVAETV 92 (446)
Q Consensus 28 ~~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~~----~~~~~e~~~~~l 92 (446)
.....+...+.||||+++|...+..=.|+|+||..|+-+. ..||+||+.+.+. .+..+..++..+
T Consensus 35 ~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 35 VDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred ecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 4566778899999999999988744356999999999864 5899999987643 355666666654
No 32
>KOG2164|consensus
Probab=96.90 E-value=0.00026 Score=72.90 Aligned_cols=67 Identities=21% Similarity=0.539 Sum_probs=44.0
Q ss_pred cccccccCCCCCCCCCCCC-ccCCCCceecccccCcCcCccccccccceeccCcccC---------CCCCCCCCCCCc
Q psy17006 11 GIVGSRRHEPTHPSMCPGT-STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK---------LSCCSTCRGPLG 78 (446)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~---------~~~CP~Cr~~~~ 78 (446)
|.-...+.+||.|...... ..-....+.||||+....-|+ ...|||+||..|+-. ...||+|+..+.
T Consensus 160 gd~~~qn~dpD~p~~~e~i~qv~~~t~~~CPICL~~~~~p~-~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 160 GDYVLQNTDPDAPVDWEDIFQVYGSTDMQCPICLEPPSVPV-RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT 236 (513)
T ss_pred cchhhhccCCccccchHHhhhhhcCcCCcCCcccCCCCccc-ccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence 3333445666665422100 111122688999999998886 445799999999865 248999998775
No 33
>KOG0317|consensus
Probab=96.85 E-value=0.00031 Score=67.36 Aligned_cols=44 Identities=23% Similarity=0.627 Sum_probs=37.6
Q ss_pred CCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 34 ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
.....|.+|.+...+|- -..|||+||-+|+..+ ..||.||+.+.
T Consensus 237 ~a~~kC~LCLe~~~~pS-aTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPS-ATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCCCCC-cCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 35589999999999995 5568999999999874 58999999875
No 34
>PHA02926 zinc finger-like protein; Provisional
Probab=96.47 E-value=0.00054 Score=63.52 Aligned_cols=46 Identities=24% Similarity=0.631 Sum_probs=34.8
Q ss_pred CCCceecccccCcCcCc---------cccccccceeccCcccCC----------CCCCCCCCCCcc
Q psy17006 33 LASLFECPVCFDYVLPP---------IIQCQSGHLVCSNCRPKL----------SCCSTCRGPLGN 79 (446)
Q Consensus 33 l~~~l~C~iC~~~l~~P---------v~qC~~GH~~C~~C~~~~----------~~CP~Cr~~~~~ 79 (446)
..+..+|+||.+.+.++ + .-.|+|.||..|+.++ ..||.||..+..
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGI-L~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGL-LDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccc-cCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 34568999999987442 2 2256999999999864 239999998764
No 35
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.26 E-value=0.00068 Score=46.94 Aligned_cols=27 Identities=37% Similarity=1.077 Sum_probs=16.2
Q ss_pred cccccCcCcC----ccccccccceeccCcccCC
Q psy17006 39 CPVCFDYVLP----PIIQCQSGHLVCSNCRPKL 67 (446)
Q Consensus 39 C~iC~~~l~~----Pv~qC~~GH~~C~~C~~~~ 67 (446)
||||.+ +.. |+.. .|||+||..|++++
T Consensus 1 CpIc~e-~~~~~n~P~~L-~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVL-PCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE--SSS-EEEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEE-eCccHHHHHHHHHH
Confidence 899999 766 8732 25999999999874
No 36
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0011 Score=63.01 Aligned_cols=44 Identities=25% Similarity=0.582 Sum_probs=36.2
Q ss_pred CCceecccccCcCcCccccccccceeccCcccC-C-----CCCCCCCCCCc
Q psy17006 34 ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-L-----SCCSTCRGPLG 78 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~-~-----~~CP~Cr~~~~ 78 (446)
...++|+||.+....|. ...|||+||-.|+.. + ..||.||....
T Consensus 213 ~~d~kC~lC~e~~~~ps-~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPS-CTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcc-cccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 35799999999999997 445799999999876 2 35999998653
No 37
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=95.88 E-value=0.0027 Score=41.63 Aligned_cols=34 Identities=32% Similarity=0.978 Sum_probs=26.9
Q ss_pred cccccCcCcCccccccccceeccCcccCC-----CCCCCC
Q psy17006 39 CPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTC 73 (446)
Q Consensus 39 C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~C 73 (446)
|+||.+....++ .-.+||.||..|+..+ ..||.|
T Consensus 1 C~iC~~~~~~~~-~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPV-VLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcE-EecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988776 3356999999999743 468876
No 38
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.79 E-value=0.019 Score=50.72 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=22.8
Q ss_pred ccccCCCCCCCCccccChhHHHHHHhhcCC
Q psy17006 122 RPYHCPCPGASCKWSGALDQVMGHLNQSHK 151 (446)
Q Consensus 122 ~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~ 151 (446)
++-.|+.. +|.+.|...+|.+|.+..|+
T Consensus 106 K~RsC~~e--~C~F~GtY~eLrKHar~~HP 133 (162)
T PF07800_consen 106 KKRSCSQE--SCSFSGTYSELRKHARSEHP 133 (162)
T ss_pred CCccCccc--ccccccCHHHHHHHHHhhCC
Confidence 33445553 89999999999999999997
No 39
>KOG2177|consensus
Probab=95.49 E-value=0.0029 Score=61.71 Aligned_cols=68 Identities=24% Similarity=0.524 Sum_probs=50.1
Q ss_pred CccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc-cccchHHHHHhhhcccccc
Q psy17006 29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG-NIRNLAMEKVAETVTFPCR 97 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~-~~~~~~~e~~~~~l~v~C~ 97 (446)
....+.+.+.||||.+.+..|. .=.|||.||..|+..+ ..||.||.+.. ..+|..+.+++..+.....
T Consensus 6 ~~~~~~~~~~C~iC~~~~~~p~-~l~C~H~~c~~C~~~~~~~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 6 LLEVLQEELTCPICLEYFREPV-LLPCGHNFCRACLTRSWEGPLSCPVCRPPSRNLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred hhhhccccccChhhHHHhhcCc-cccccchHhHHHHHHhcCCCcCCcccCCchhccCccHHHHHHHHHHHhcCC
Confidence 3466778999999999999995 3345999999999874 48999995221 1266777777766655544
No 40
>KOG4159|consensus
Probab=95.42 E-value=0.0032 Score=64.35 Aligned_cols=50 Identities=32% Similarity=0.739 Sum_probs=42.7
Q ss_pred CCccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 28 GTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 28 ~~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
+++..+.+.|.|.||...+.+|+. ..|||.+|..|+.+. ..||.||.++.
T Consensus 76 s~~~~~~sef~c~vc~~~l~~pv~-tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 76 SGPEEIRSEFECCVCSRALYPPVV-TPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred ccCccccchhhhhhhHhhcCCCcc-ccccccccHHHHHHHhccCCCCcccccccc
Confidence 456777899999999999999984 488999999997653 68999999875
No 41
>KOG0978|consensus
Probab=95.36 E-value=0.0034 Score=67.77 Aligned_cols=48 Identities=23% Similarity=0.647 Sum_probs=39.2
Q ss_pred cCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN 79 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~ 79 (446)
.+....|.||+|..=..+-| ...|||.||..|+.+. .+||.|..+|+.
T Consensus 638 k~yK~~LkCs~Cn~R~Kd~v-I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 638 KEYKELLKCSVCNTRWKDAV-ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HHHHhceeCCCccCchhhHH-HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 34568899999997777776 4566999999999863 799999999873
No 42
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.04 E-value=0.0089 Score=54.30 Aligned_cols=54 Identities=22% Similarity=0.450 Sum_probs=40.8
Q ss_pred eecccccCcCcCccccccccceeccCcccC----CCCCCCCCCCCc-c-ccchHHHHHhhh
Q psy17006 37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPK----LSCCSTCRGPLG-N-IRNLAMEKVAET 91 (446)
Q Consensus 37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~----~~~CP~Cr~~~~-~-~~~~~~e~~~~~ 91 (446)
|.|.||..-+..|| ...|||.||+.|..+ -+.|-+|.+... . .-...++++++.
T Consensus 197 F~C~iCKkdy~spv-vt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~kmL~~ 256 (259)
T COG5152 197 FLCGICKKDYESPV-VTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKMLNK 256 (259)
T ss_pred eeehhchhhccchh-hhhcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHHHhh
Confidence 78999999999998 455699999999764 368999987543 2 234556777654
No 43
>KOG2660|consensus
Probab=93.80 E-value=0.015 Score=57.16 Aligned_cols=63 Identities=21% Similarity=0.474 Sum_probs=47.9
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccC----CCCCCCCCCCCcc------c-cchHHHHHhhhc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----LSCCSTCRGPLGN------I-RNLAMEKVAETV 92 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~----~~~CP~Cr~~~~~------~-~~~~~e~~~~~l 92 (446)
-.++.+...|.+|..+|.++-+.-.|=|+||++|+-+ ...||.|...+.. + .|+.++.++..|
T Consensus 9 ~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 9 LTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 4677888999999999999965445689999999876 3689999986642 2 456666665544
No 44
>KOG1813|consensus
Probab=93.78 E-value=0.046 Score=52.92 Aligned_cols=43 Identities=28% Similarity=0.696 Sum_probs=36.1
Q ss_pred eecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCccc
Q psy17006 37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGNI 80 (446)
Q Consensus 37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~~ 80 (446)
+.|-||...+..|| ...|||.||..|..+. ..|++|.+....+
T Consensus 242 f~c~icr~~f~~pV-vt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 242 FKCFICRKYFYRPV-VTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred ccccccccccccch-hhcCCceeehhhhccccccCCcceecccccccc
Confidence 67999999999998 5567999999998753 6899999877543
No 45
>KOG4172|consensus
Probab=93.55 E-value=0.0063 Score=43.61 Aligned_cols=40 Identities=35% Similarity=1.087 Sum_probs=32.0
Q ss_pred eecccccCcCcCcc-ccccccc-eeccCcccCC-----CCCCCCCCCCc
Q psy17006 37 FECPVCFDYVLPPI-IQCQSGH-LVCSNCRPKL-----SCCSTCRGPLG 78 (446)
Q Consensus 37 l~C~iC~~~l~~Pv-~qC~~GH-~~C~~C~~~~-----~~CP~Cr~~~~ 78 (446)
-+|-||.+-..+-| |.| || -.|-.|-.++ ..||+||.++.
T Consensus 8 dECTICye~pvdsVlYtC--GHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTC--GHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHc--chHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 57999999888877 566 99 6788886653 58999999874
No 46
>KOG2879|consensus
Probab=93.49 E-value=0.051 Score=52.08 Aligned_cols=48 Identities=27% Similarity=0.509 Sum_probs=38.1
Q ss_pred cCCCCceecccccCcCcCccccccccceeccCcccCC------CCCCCCCCCCc
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL------SCCSTCRGPLG 78 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~------~~CP~Cr~~~~ 78 (446)
+.-....+||+|.+....|...=.|||++|-.|+.+. -.||.|.++..
T Consensus 234 s~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4445678999999999999632237999999999874 38999998764
No 47
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.47 E-value=0.016 Score=40.94 Aligned_cols=39 Identities=28% Similarity=0.837 Sum_probs=19.4
Q ss_pred cccccCcCcC---ccccccccceeccCcccCC-----CCCCCCCCCC
Q psy17006 39 CPVCFDYVLP---PIIQCQSGHLVCSNCRPKL-----SCCSTCRGPL 77 (446)
Q Consensus 39 C~iC~~~l~~---Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~ 77 (446)
||+|.+.+-. -++-|.||..+|..|+.++ ..||.||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7888888821 2346899999999997653 5899999875
No 48
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=93.25 E-value=0.032 Score=43.31 Aligned_cols=36 Identities=28% Similarity=0.751 Sum_probs=26.8
Q ss_pred cccccCcCcCc------------cccccccceeccCcccCC----CCCCCCC
Q psy17006 39 CPVCFDYVLPP------------IIQCQSGHLVCSNCRPKL----SCCSTCR 74 (446)
Q Consensus 39 C~iC~~~l~~P------------v~qC~~GH~~C~~C~~~~----~~CP~Cr 74 (446)
|+||.+.|.+| +..-.|||.|-..|+.++ ..||+||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 99999999443 222246999999999863 5899997
No 49
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.02 E-value=0.041 Score=53.10 Aligned_cols=55 Identities=22% Similarity=0.514 Sum_probs=40.3
Q ss_pred eecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCC---Cc-cccchHHHHHhhh
Q psy17006 37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGP---LG-NIRNLAMEKVAET 91 (446)
Q Consensus 37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~---~~-~~~~~~~e~~~~~ 91 (446)
|.||.|+.+|+.|+-.=.|||.||..|+... ..||.|... +. ..++...++++..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~ 338 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEK 338 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHH
Confidence 8999999999999843236999999999863 589999763 22 2455555555543
No 50
>KOG0824|consensus
Probab=91.50 E-value=0.086 Score=51.22 Aligned_cols=43 Identities=26% Similarity=0.557 Sum_probs=35.3
Q ss_pred ceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc
Q psy17006 36 LFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN 79 (446)
Q Consensus 36 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~ 79 (446)
.-+|+||+....-|+ .=.|+|-||--|++-. ..|++||.++..
T Consensus 7 ~~eC~IC~nt~n~Pv-~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCPV-NLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcCc-cccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 357999999999997 2234999999999864 479999999973
No 51
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=91.23 E-value=0.043 Score=40.40 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=21.7
Q ss_pred CceecccccCcCcCccccccccceeccCcccC
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK 66 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 66 (446)
-.+.|||...++.+||..-.|||.|-+..+..
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~ 41 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQ 41 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHH
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHH
Confidence 45899999999999985446799998888765
No 52
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=91.19 E-value=0.029 Score=39.95 Aligned_cols=29 Identities=34% Similarity=0.909 Sum_probs=23.4
Q ss_pred eeeccCcc-cccCcccCC----CCCCCCCCCCCc
Q psy17006 219 TYCQSGHL-VCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 219 ~~C~~gh~-~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
..=|.||. +|..|..++ ..||.||.++..
T Consensus 16 ~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 16 VLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp EEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred EEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 33478999 999999986 699999998764
No 53
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=90.99 E-value=0.21 Score=36.20 Aligned_cols=42 Identities=31% Similarity=0.747 Sum_probs=31.4
Q ss_pred CceecccccCcCcC-ccccccccceeccCcccC--CCCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLP-PIIQCQSGHLVCSNCRPK--LSCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~-Pv~qC~~GH~~C~~C~~~--~~~CP~Cr~~~~ 78 (446)
....|-.|...-.. ++..| ||.+|..|+.- .+.||.|..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pC--gH~I~~~~f~~~rYngCPfC~~~~~ 50 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPC--GHLICDNCFPGERYNGCPFCGTPFE 50 (55)
T ss_pred cceeEEEccccccccccccc--cceeeccccChhhccCCCCCCCccc
Confidence 44566777776544 44455 99999999975 478999999885
No 54
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.93 E-value=0.062 Score=52.77 Aligned_cols=44 Identities=23% Similarity=0.726 Sum_probs=34.6
Q ss_pred CCceecccccCcCc---CccccccccceeccCcccCC-----CCCCCCCCCCc
Q psy17006 34 ASLFECPVCFDYVL---PPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLG 78 (446)
Q Consensus 34 ~~~l~C~iC~~~l~---~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~ 78 (446)
++.+ ||.|-+.+- ...+-|+||-.+|.-|+..+ .+||.||....
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 3445 999999884 23457889999999999864 69999998664
No 55
>KOG4275|consensus
Probab=90.63 E-value=0.065 Score=51.69 Aligned_cols=42 Identities=24% Similarity=0.698 Sum_probs=35.4
Q ss_pred CceecccccCcCcCccccccccc-eeccCcccCCCCCCCCCCCC
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGH-LVCSNCRPKLSCCSTCRGPL 77 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH-~~C~~C~~~~~~CP~Cr~~~ 77 (446)
....|.||.+..++-++. .||| ..|-.|-+++..||+||+.+
T Consensus 299 ~~~LC~ICmDaP~DCvfL-eCGHmVtCt~CGkrm~eCPICRqyi 341 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFL-ECGHMVTCTKCGKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHHhcCCcceEEe-ecCcEEeehhhccccccCchHHHHH
Confidence 367899999999998742 3499 78999999999999999854
No 56
>KOG2462|consensus
Probab=90.24 E-value=0.69 Score=44.63 Aligned_cols=125 Identities=15% Similarity=0.219 Sum_probs=71.0
Q ss_pred cCCCCceecccccCcCcCccccccccceeccCcccCCCCCCCCCCCCccccchHHHHHhhhccccccccCCCCeeeecC-
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLH- 109 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~CP~Cr~~~~~~~~~~~e~~~~~l~v~C~~~~~GC~~~~~~- 109 (446)
......+.|+-|...+..--=.-.--..-|..=-.+...|+.|.+.........+-...-.|...|+. |+..+..
T Consensus 125 ~~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~i----CGKaFSRP 200 (279)
T KOG2462|consen 125 AAKHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGI----CGKAFSRP 200 (279)
T ss_pred cccCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCccccc----ccccccch
Confidence 33557788888888775421000000011111113346788888766555555555555566777775 7776663
Q ss_pred CChhhHhh-hCCCccccCCCCCCCCcccc-ChhHHHHHHhhcCC-CcceecCccEEE
Q psy17006 110 TEKPEHED-ACEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHK-TITTLQGEDIVF 163 (446)
Q Consensus 110 ~~~~~H~~-~C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~-~~~~c~~c~~~f 163 (446)
..|+.|.+ -=--+|+.|| .|+... .|.+|..|++..-. ..-.|+-|.+.|
T Consensus 201 WLLQGHiRTHTGEKPF~C~----hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsF 253 (279)
T KOG2462|consen 201 WLLQGHIRTHTGEKPFSCP----HCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSF 253 (279)
T ss_pred HHhhcccccccCCCCccCC----cccchhcchHHHHHHHHhhcCCccccCcchhhHH
Confidence 45556653 2233567787 477664 67888888875322 345677776544
No 57
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.83 E-value=0.68 Score=41.04 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.7
Q ss_pred CCcccccChhHHHHHhhhccCcc
Q psy17006 299 ASCKWSGALDQVMGHLNQSHKTI 321 (446)
Q Consensus 299 ~~C~~~g~~~~l~~H~~~~H~~~ 321 (446)
.+|+|.|.+.+|.+|.+..|...
T Consensus 113 e~C~F~GtY~eLrKHar~~HP~~ 135 (162)
T PF07800_consen 113 ESCSFSGTYSELRKHARSEHPSA 135 (162)
T ss_pred cccccccCHHHHHHHHHhhCCCC
Confidence 36999999999999999999864
No 58
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=88.59 E-value=0.11 Score=35.94 Aligned_cols=23 Identities=39% Similarity=0.976 Sum_probs=19.3
Q ss_pred eccCcccccCcccCCC----CCCCCCC
Q psy17006 221 CQSGHLVCSNCRPKLS----CCSTCRG 243 (446)
Q Consensus 221 C~~gh~~C~~C~~~~~----~Cp~Cr~ 243 (446)
=+.||++|..|..++. .||.||+
T Consensus 18 ~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 18 TSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred cccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 3569999999999865 8999974
No 59
>KOG4739|consensus
Probab=88.49 E-value=0.24 Score=46.84 Aligned_cols=43 Identities=21% Similarity=0.685 Sum_probs=33.1
Q ss_pred ceecccccCcC-cCccccccccceeccCcccCC--CCCCCCCCCCc
Q psy17006 36 LFECPVCFDYV-LPPIIQCQSGHLVCSNCRPKL--SCCSTCRGPLG 78 (446)
Q Consensus 36 ~l~C~iC~~~l-~~Pv~qC~~GH~~C~~C~~~~--~~CP~Cr~~~~ 78 (446)
-..|..|+.-- .+|.+...|+|+||..|.... ..||+|++++.
T Consensus 3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir 48 (233)
T KOG4739|consen 3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIR 48 (233)
T ss_pred eEEeccccccCCCCceeeeechhhhhhhhcccCCccccccccceee
Confidence 45788886655 456666777999999999864 38999999864
No 60
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.36 E-value=0.14 Score=43.94 Aligned_cols=44 Identities=25% Similarity=0.788 Sum_probs=35.0
Q ss_pred CceecccccCcCcCccc----cccccceeccCcccCC-------CCCCCCCCCCcc
Q psy17006 35 SLFECPVCFDYVLPPII----QCQSGHLVCSNCRPKL-------SCCSTCRGPLGN 79 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~----qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~~ 79 (446)
..++|.||.+.-.++.+ .| ||-..|..|...+ +.||+|+..+.+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneC-CgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNEC-CGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccc-cchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 67999999999865432 45 6999999997753 799999998753
No 61
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=88.23 E-value=0.14 Score=40.66 Aligned_cols=40 Identities=28% Similarity=0.507 Sum_probs=28.8
Q ss_pred cccccCcCcC-ccccccccceeccCcccCC-------CCCCCCCCCCc
Q psy17006 39 CPVCFDYVLP-PIIQCQSGHLVCSNCRPKL-------SCCSTCRGPLG 78 (446)
Q Consensus 39 C~iC~~~l~~-Pv~qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~ 78 (446)
||.|..+-.+ |+.-..|+|.|=..|+.+. ..||+||++..
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 5555555433 6545567999999998762 58999999764
No 62
>KOG0320|consensus
Probab=85.71 E-value=0.18 Score=45.50 Aligned_cols=29 Identities=31% Similarity=0.756 Sum_probs=23.4
Q ss_pred eeeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006 219 TYCQSGHLVCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 219 ~~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
..-.+||+||+.|.+.. .+||+|+..+..
T Consensus 147 vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 147 VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred cccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 44577999999999873 589999987653
No 63
>KOG4265|consensus
Probab=84.26 E-value=0.48 Score=47.28 Aligned_cols=43 Identities=33% Similarity=0.811 Sum_probs=34.4
Q ss_pred CCceecccccCcCcCcc-ccccccc-eeccCcccCC----CCCCCCCCCCc
Q psy17006 34 ASLFECPVCFDYVLPPI-IQCQSGH-LVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv-~qC~~GH-~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
++--+|.||..=.++-+ +-| -| -.|+.|.+.+ .+||+||+++.
T Consensus 288 ~~gkeCVIClse~rdt~vLPC--RHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPC--RHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecc--hhhehhHhHHHHHHHhhcCCCccccchH
Confidence 44578999999998875 345 66 6899998865 58999999986
No 64
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=82.61 E-value=1.1 Score=33.68 Aligned_cols=34 Identities=29% Similarity=0.698 Sum_probs=17.4
Q ss_pred ccCcccccCcccCC--CCCCCCCCCC--Cccc-cHHHHH
Q psy17006 222 QSGHLVCSNCRPKL--SCCSTCRGPL--GNIR-NLAMEK 255 (446)
Q Consensus 222 ~~gh~~C~~C~~~~--~~Cp~Cr~~~--~~~r-~~~~e~ 255 (446)
...|++|+.|...- ..||.|..|. +..| |+.+++
T Consensus 25 ~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD~~~NrqLd~ 63 (65)
T PF14835_consen 25 GCEHIFCSSCIRDCIGSECPVCHTPAWIQDIQINRQLDS 63 (65)
T ss_dssp SSS--B-TTTGGGGTTTB-SSS--B-S-SS----HHHHH
T ss_pred cCccHHHHHHhHHhcCCCCCCcCChHHHHHHHhhhhhhc
Confidence 45799999999874 5899999985 3333 555554
No 65
>KOG0802|consensus
Probab=81.80 E-value=0.32 Score=52.43 Aligned_cols=42 Identities=31% Similarity=0.716 Sum_probs=34.0
Q ss_pred CCceecccccCcCcC-----c-cccccccceeccCcccCC----CCCCCCCCCC
Q psy17006 34 ASLFECPVCFDYVLP-----P-IIQCQSGHLVCSNCRPKL----SCCSTCRGPL 77 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~-----P-v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~ 77 (446)
...-.|+||.+.|.. | .+.| ||.|+..|+.++ ..||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C--~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPC--GHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeec--ccchHHHHHHHHHHHhCcCCcchhhh
Confidence 456789999999977 4 3455 999999999875 6899999843
No 66
>KOG1002|consensus
Probab=81.17 E-value=0.38 Score=50.10 Aligned_cols=48 Identities=23% Similarity=0.464 Sum_probs=38.5
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC---------CCCCCCCCCCc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL---------SCCSTCRGPLG 78 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~---------~~CP~Cr~~~~ 78 (446)
..+-....+|.+|.++..+++ ...|.|.||+-|+... ..||.|-.+++
T Consensus 530 ~~enk~~~~C~lc~d~aed~i-~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAEDYI-ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred CccccCceeecccCChhhhhH-hhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 344456789999999999998 5667999999999642 48999988764
No 67
>KOG4367|consensus
Probab=79.72 E-value=0.52 Score=47.96 Aligned_cols=32 Identities=31% Similarity=0.756 Sum_probs=26.9
Q ss_pred CCceecccccCcCcCccccccccceeccCcccC
Q psy17006 34 ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK 66 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 66 (446)
++.|.||||...+++|+. =.|||..|..|...
T Consensus 2 eeelkc~vc~~f~~epii-l~c~h~lc~~ca~~ 33 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPII-LPCSHNLCQACARN 33 (699)
T ss_pred cccccCceehhhccCceE-eecccHHHHHHHHh
Confidence 578999999999999983 23499999999764
No 68
>KOG2231|consensus
Probab=79.11 E-value=1.9 Score=47.00 Aligned_cols=40 Identities=28% Similarity=0.535 Sum_probs=28.0
Q ss_pred ecccccCcCcCccccccccc-eeccCcccCC----------CCCCCCCCCCc
Q psy17006 38 ECPVCFDYVLPPIIQCQSGH-LVCSNCRPKL----------SCCSTCRGPLG 78 (446)
Q Consensus 38 ~C~iC~~~l~~Pv~qC~~GH-~~C~~C~~~~----------~~CP~Cr~~~~ 78 (446)
.|+||..-+.-+.+ =.||| .+|..|..++ ..||+|+..+.
T Consensus 2 ~c~ic~~s~~~~~~-~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGR-GSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCcccccc-ccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 37888777665542 23599 9999998763 25799988553
No 69
>KOG3608|consensus
Probab=78.23 E-value=0.68 Score=46.07 Aligned_cols=79 Identities=18% Similarity=0.421 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCcccc--HHH-HHHHhhcccCcccCCCCCeEeec-CCCchhHHhhCCCCCccCCCCCCCcccccC-hhHH
Q psy17006 236 SCCSTCRGPLGNIRN--LAM-EKVAETVTFPCRYQMNGCNVVLL-HTEKPEHEDACEYRPYHCPCPGASCKWSGA-LDQV 310 (446)
Q Consensus 236 ~~Cp~Cr~~~~~~r~--~~~-e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~C~~~~~~Cp~~~~~C~~~g~-~~~l 310 (446)
.+||.|....+..-. .|| -+-...-++.|. -|..... ..+|.+|...=.--.|.|-++. |.++.. +.+|
T Consensus 264 ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd----~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~--C~~s~r~~~q~ 337 (467)
T KOG3608|consen 264 YKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCD----ECDTRCVRESDLAKHVQVHSKTVYQCEHPD--CHYSVRTYTQM 337 (467)
T ss_pred ccccccccCCCChHHHHHHHHhhhccCCCcccc----chhhhhccHHHHHHHHHhccccceecCCCC--CcHHHHHHHHH
Confidence 379999876653211 122 122334555554 3665444 5689999875556677888775 988854 6689
Q ss_pred HHHhhhccCc
Q psy17006 311 MGHLNQSHKT 320 (446)
Q Consensus 311 ~~H~~~~H~~ 320 (446)
..|+.+.|..
T Consensus 338 ~~H~~evhEg 347 (467)
T KOG3608|consen 338 RRHFLEVHEG 347 (467)
T ss_pred HHHHHHhccC
Confidence 9999999954
No 70
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=78.10 E-value=0.64 Score=35.54 Aligned_cols=37 Identities=30% Similarity=0.747 Sum_probs=22.6
Q ss_pred eecccccCcCcCccccccccceeccCcccCC---CCCCCCCCCCc
Q psy17006 37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL---SCCSTCRGPLG 78 (446)
Q Consensus 37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~---~~CP~Cr~~~~ 78 (446)
+.||.|...|..- .|+..|..|-... ..||.|.+++.
T Consensus 2 ~~CP~C~~~L~~~-----~~~~~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ-----GGHYHCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE-----TTEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEe-----CCEEECccccccceecccCCCcccHHH
Confidence 6799999985432 2899999998763 68999999886
No 71
>KOG3039|consensus
Probab=77.45 E-value=0.99 Score=42.77 Aligned_cols=44 Identities=30% Similarity=0.465 Sum_probs=36.1
Q ss_pred CceecccccCcCcCcc---ccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLPPI---IQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv---~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
..|.||+|.+.|.+.+ +.=.+||.+|..|.+++ ..||+|..++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 6799999999998754 12247999999999986 47999998875
No 72
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=76.99 E-value=1.9 Score=31.10 Aligned_cols=48 Identities=29% Similarity=0.598 Sum_probs=29.3
Q ss_pred ccccccCCCCeeeecCCChhhHhhhCC---CccccCCCCCCCCccccChhHHHHHHhhcC
Q psy17006 94 FPCRYQMNGCNVVLLHTEKPEHEDACE---YRPYHCPCPGASCKWSGALDQVMGHLNQSH 150 (446)
Q Consensus 94 v~C~~~~~GC~~~~~~~~~~~H~~~C~---~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h 150 (446)
+.||| |...+....|..|..+-- -..+.||. |..... .+|..|+...|
T Consensus 3 f~CP~----C~~~~~~~~L~~H~~~~H~~~~~~v~CPi----C~~~~~-~~l~~Hl~~~H 53 (54)
T PF05605_consen 3 FTCPY----CGKGFSESSLVEHCEDEHRSESKNVVCPI----CSSRVT-DNLIRHLNSQH 53 (54)
T ss_pred cCCCC----CCCccCHHHHHHHHHhHCcCCCCCccCCC----chhhhh-hHHHHHHHHhc
Confidence 56777 777666667777753211 13567773 766533 47777777655
No 73
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=75.64 E-value=1.9 Score=31.14 Aligned_cols=49 Identities=31% Similarity=0.641 Sum_probs=28.8
Q ss_pred cCcccCCCCCeEeecCCCchhHHhh--C-CCCCccCCCCCCCcccccChhHHHHHhhhccC
Q psy17006 262 FPCRYQMNGCNVVLLHTEKPEHEDA--C-EYRPYHCPCPGASCKWSGALDQVMGHLNQSHK 319 (446)
Q Consensus 262 ~~C~~~~~GC~~~~~~~~l~~He~~--C-~~~~~~Cp~~~~~C~~~g~~~~l~~H~~~~H~ 319 (446)
++||| |+..+....|..|..+ . .-..+.||. |... ...+|..|+...|.
T Consensus 3 f~CP~----C~~~~~~~~L~~H~~~~H~~~~~~v~CPi----C~~~-~~~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 3 FTCPY----CGKGFSESSLVEHCEDEHRSESKNVVCPI----CSSR-VTDNLIRHLNSQHR 54 (54)
T ss_pred cCCCC----CCCccCHHHHHHHHHhHCcCCCCCccCCC----chhh-hhhHHHHHHHHhcC
Confidence 45666 5555555566666532 1 123567885 6554 33488888887773
No 74
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=74.01 E-value=2.2 Score=31.04 Aligned_cols=26 Identities=38% Similarity=0.911 Sum_probs=22.2
Q ss_pred ccCcccccCcccCC--CCCCCCCCCCCc
Q psy17006 222 QSGHLVCSNCRPKL--SCCSTCRGPLGN 247 (446)
Q Consensus 222 ~~gh~~C~~C~~~~--~~Cp~Cr~~~~~ 247 (446)
++||++|..|..-. +-||.|..++..
T Consensus 24 pCgH~I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 24 PCGHLICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred cccceeeccccChhhccCCCCCCCcccC
Confidence 67999999998864 689999998864
No 75
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=73.44 E-value=2.3 Score=25.01 Aligned_cols=23 Identities=30% Similarity=0.758 Sum_probs=17.0
Q ss_pred cCCCCCCCcccccChhHHHHHhhhccC
Q psy17006 293 HCPCPGASCKWSGALDQVMGHLNQSHK 319 (446)
Q Consensus 293 ~Cp~~~~~C~~~g~~~~l~~H~~~~H~ 319 (446)
.|+. |+|......|..|++..|.
T Consensus 2 ~C~~----C~y~t~~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 2 KCPH----CSYSTSKSNLKRHLKRHHP 24 (24)
T ss_dssp E-SS----SS-EESHHHHHHHHHHHHS
T ss_pred CCCC----CCCcCCHHHHHHHHHhhCc
Confidence 5664 8898888899999988773
No 76
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=72.68 E-value=0.86 Score=34.97 Aligned_cols=43 Identities=28% Similarity=0.757 Sum_probs=16.9
Q ss_pred ceecccccCcCc-C---cccccc---ccceeccCcccCC---------------CCCCCCCCCCc
Q psy17006 36 LFECPVCFDYVL-P---PIIQCQ---SGHLVCSNCRPKL---------------SCCSTCRGPLG 78 (446)
Q Consensus 36 ~l~C~iC~~~l~-~---Pv~qC~---~GH~~C~~C~~~~---------------~~CP~Cr~~~~ 78 (446)
..+|+||...+. . |...|. |+..|=..|+.++ ..||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999999865 2 555563 4544445666542 25888888765
No 77
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=72.57 E-value=0.56 Score=33.18 Aligned_cols=30 Identities=30% Similarity=0.855 Sum_probs=16.1
Q ss_pred cceeeeccCcccccCcccCC-----CCCCCCCCCC
Q psy17006 216 EHFTYCQSGHLVCSNCRPKL-----SCCSTCRGPL 245 (446)
Q Consensus 216 ~~~~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~ 245 (446)
..+.-|+.|.-+|..|..++ ..||.||++.
T Consensus 13 ~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 13 KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 46788999999999997653 4899999874
No 78
>KOG0317|consensus
Probab=71.08 E-value=1.1 Score=43.64 Aligned_cols=27 Identities=26% Similarity=0.661 Sum_probs=22.3
Q ss_pred eccCcccccCcccC----CCCCCCCCCCCCc
Q psy17006 221 CQSGHLVCSNCRPK----LSCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~~C~~C~~~----~~~Cp~Cr~~~~~ 247 (446)
-|+||++|-+|... ...||.||..+..
T Consensus 255 TpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 255 TPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 38899999999865 2579999998875
No 79
>PHA02929 N1R/p28-like protein; Provisional
Probab=70.80 E-value=1.2 Score=42.58 Aligned_cols=28 Identities=25% Similarity=0.720 Sum_probs=22.9
Q ss_pred eccCcccccCcccC----CCCCCCCCCCCCcc
Q psy17006 221 CQSGHLVCSNCRPK----LSCCSTCRGPLGNI 248 (446)
Q Consensus 221 C~~gh~~C~~C~~~----~~~Cp~Cr~~~~~~ 248 (446)
-+++|++|..|..+ ...||.||.++..+
T Consensus 198 ~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v 229 (238)
T PHA02929 198 SNCNHVFCIECIDIWKKEKNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCcccHHHHHHHHhcCCCCCCCCCEeeEE
Confidence 46799999999865 35899999988753
No 80
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=70.57 E-value=2 Score=25.96 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=8.3
Q ss_pred CeeeecCCChhhHhhhC
Q psy17006 103 CNVVLLHTEKPEHEDAC 119 (446)
Q Consensus 103 C~~~~~~~~~~~H~~~C 119 (446)
|+-.+..+.++.|+..|
T Consensus 8 CgR~F~~~~l~~H~~~C 24 (25)
T PF13913_consen 8 CGRKFNPDRLEKHEKIC 24 (25)
T ss_pred CCCEECHHHHHHHHHhc
Confidence 44444444455554444
No 81
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.97 E-value=1.8 Score=42.25 Aligned_cols=44 Identities=20% Similarity=0.495 Sum_probs=33.8
Q ss_pred CceecccccCcCcC--ccccccccceeccCcccCC-----CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLP--PIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~--Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~ 78 (446)
.-.+|.||.+-+.+ -+..-+|.|.|=..|++++ .+||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 34889999887753 2323456999999999985 58999999774
No 82
>KOG3161|consensus
Probab=68.16 E-value=0.7 Score=49.32 Aligned_cols=39 Identities=33% Similarity=0.960 Sum_probs=30.9
Q ss_pred cCCCCceecccccCcC----cCcc-ccccccceeccCcccCC--CCCC
Q psy17006 31 TDLASLFECPVCFDYV----LPPI-IQCQSGHLVCSNCRPKL--SCCS 71 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l----~~Pv-~qC~~GH~~C~~C~~~~--~~CP 71 (446)
-.+.+.+.|+||...+ ..|+ ++| ||+.|+.|.+.+ ..||
T Consensus 6 ~~w~~~l~c~ic~n~f~~~~~~Pvsl~c--ghtic~~c~~~lyn~scp 51 (861)
T KOG3161|consen 6 LKWVLLLLCDICLNLFVVQRLEPVSLQC--GHTICGHCVQLLYNASCP 51 (861)
T ss_pred hhhHHHhhchHHHHHHHHHhcCcccccc--cchHHHHHHHhHhhccCC
Confidence 4566789999996665 3587 466 999999999986 5788
No 83
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.71 E-value=2.3 Score=43.81 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=26.2
Q ss_pred eccCcccccCcccCC----CCCCCCCCCCCc---cccHHHHHH
Q psy17006 221 CQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKV 256 (446)
Q Consensus 221 C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~---~r~~~~e~~ 256 (446)
=++||.+|..|.... ..||.|+.++.. .+|..++++
T Consensus 42 tpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~i 84 (397)
T TIGR00599 42 TSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEI 84 (397)
T ss_pred CCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHH
Confidence 378999999998852 479999998764 235555443
No 84
>PF05253 zf-U11-48K: U11-48K-like CHHC zinc finger; InterPro: IPR022776 This zinc binding domain [] has four conserved zinc chelating residues in a CHHC pattern. This domain is predicted to have an RNA-binding function []. ; PDB: 2VY5_A 2VY4_A.
Probab=66.43 E-value=1.5 Score=27.02 Aligned_cols=24 Identities=21% Similarity=0.402 Sum_probs=17.4
Q ss_pred cCcccCCCCCeEeecCCCchhHHhhCC
Q psy17006 262 FPCRYQMNGCNVVLLHTEKPEHEDACE 288 (446)
Q Consensus 262 ~~C~~~~~GC~~~~~~~~l~~He~~C~ 288 (446)
+.||| .-...++..+|..|+..|+
T Consensus 3 v~CPy---n~~H~v~~~~l~~Hi~~C~ 26 (27)
T PF05253_consen 3 VRCPY---NPSHRVPASELQKHIKKCP 26 (27)
T ss_dssp EE-TT---TSS-EEEGGGHHHHHHHHH
T ss_pred eeCCC---CCCcCcCHHHHHHHHHHcC
Confidence 46887 3567899999999998875
No 85
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=66.30 E-value=1.4 Score=42.81 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=24.0
Q ss_pred eeccCcccccCcccCC----CCCCCCCCCCCccc
Q psy17006 220 YCQSGHLVCSNCRPKL----SCCSTCRGPLGNIR 249 (446)
Q Consensus 220 ~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~~r 249 (446)
.-++||.+|+-|+.+. +.||.||.+....|
T Consensus 40 ~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esr 73 (391)
T COG5432 40 ETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESR 73 (391)
T ss_pred ecccccchhHHHHHHHhcCCCCCccccccHHhhh
Confidence 3478999999999873 58999999875443
No 86
>KOG1039|consensus
Probab=66.18 E-value=2.5 Score=42.61 Aligned_cols=45 Identities=29% Similarity=0.597 Sum_probs=34.6
Q ss_pred CCceecccccCcCcCcc-----cc--ccccceeccCcccCC-----------CCCCCCCCCCc
Q psy17006 34 ASLFECPVCFDYVLPPI-----IQ--CQSGHLVCSNCRPKL-----------SCCSTCRGPLG 78 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv-----~q--C~~GH~~C~~C~~~~-----------~~CP~Cr~~~~ 78 (446)
.....|.||.+.+..+. +. =.|-|.||..|+.++ ..||.||.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 34778999999997765 21 134899999999864 47999998764
No 87
>KOG0287|consensus
Probab=66.15 E-value=1.6 Score=43.21 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=24.0
Q ss_pred eeeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006 219 TYCQSGHLVCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 219 ~~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
..-|++|.+|+-|+.+. ++||+|+.++..
T Consensus 37 ~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 37 MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred eeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 34578999999999872 699999998874
No 88
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.68 E-value=1.7 Score=43.00 Aligned_cols=25 Identities=36% Similarity=0.906 Sum_probs=21.3
Q ss_pred ccCcccccCcccCC-----CCCCCCCCCCC
Q psy17006 222 QSGHLVCSNCRPKL-----SCCSTCRGPLG 246 (446)
Q Consensus 222 ~~gh~~C~~C~~~~-----~~Cp~Cr~~~~ 246 (446)
++||.+|.+|..++ ..||.|+.++.
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr 54 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLR 54 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence 67999999999874 37999998765
No 89
>KOG3608|consensus
Probab=65.68 E-value=2.6 Score=42.13 Aligned_cols=125 Identities=18% Similarity=0.417 Sum_probs=84.9
Q ss_pred CCceecccccCcCcCc--c-----cccc--ccceeccCcccCC----------------CCCCCCCCCCcc---ccchHH
Q psy17006 34 ASLFECPVCFDYVLPP--I-----IQCQ--SGHLVCSNCRPKL----------------SCCSTCRGPLGN---IRNLAM 85 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~P--v-----~qC~--~GH~~C~~C~~~~----------------~~CP~Cr~~~~~---~~~~~~ 85 (446)
+..+-||-|...+..- . .|.. ..+.-|+.|.++- -+||+|...... .++-..
T Consensus 205 eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r 284 (467)
T KOG3608|consen 205 EKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIR 284 (467)
T ss_pred CeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHH
Confidence 4557799999988641 1 1221 1477789998751 389999876542 344455
Q ss_pred HHHhhhccccccccCCCCeeee-cCCChhhHhhhCCCccccCCCCCCCCcccc-ChhHHHHHHhhcCC----CcceecCc
Q psy17006 86 EKVAETVTFPCRYQMNGCNVVL-LHTEKPEHEDACEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHK----TITTLQGE 159 (446)
Q Consensus 86 e~~~~~l~v~C~~~~~GC~~~~-~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~----~~~~c~~c 159 (446)
-+-..+-.++|.- |.... ...+|.+|...=.-..+.|..+ .|.+.. ...+|..|..+.|. .+-+|.-|
T Consensus 285 ~rHs~dkpfKCd~----Cd~~c~~esdL~kH~~~HS~~~y~C~h~--~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~C 358 (467)
T KOG3608|consen 285 YRHSKDKPFKCDE----CDTRCVRESDLAKHVQVHSKTVYQCEHP--DCHYSVRTYTQMRRHFLEVHEGNNPILYACHCC 358 (467)
T ss_pred hhhccCCCccccc----hhhhhccHHHHHHHHHhccccceecCCC--CCcHHHHHHHHHHHHHHHhccCCCCCceeeecc
Confidence 5666788889974 76554 4578999986444556788765 688875 45899999998883 34677777
Q ss_pred cEEEE
Q psy17006 160 DIVFL 164 (446)
Q Consensus 160 ~~~f~ 164 (446)
+..|.
T Consensus 359 dr~ft 363 (467)
T KOG3608|consen 359 DRFFT 363 (467)
T ss_pred hhhhc
Confidence 76553
No 90
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=65.52 E-value=3.2 Score=29.80 Aligned_cols=36 Identities=22% Similarity=0.590 Sum_probs=18.3
Q ss_pred cccccCcCcC--------cccccc-ccceeccCcc----cCCCCCCCCC
Q psy17006 39 CPVCFDYVLP--------PIIQCQ-SGHLVCSNCR----PKLSCCSTCR 74 (446)
Q Consensus 39 C~iC~~~l~~--------Pv~qC~-~GH~~C~~C~----~~~~~CP~Cr 74 (446)
|--|...+.. .+|+|+ |++.||..|- +.+..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 4455555544 357885 6899999994 3457899884
No 91
>PF04641 Rtf2: Rtf2 RING-finger
Probab=63.88 E-value=4.7 Score=39.19 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=37.7
Q ss_pred CCCCceecccccCcCcC--c-cccccccceeccCcccCCC---CCCCCCCCCc
Q psy17006 32 DLASLFECPVCFDYVLP--P-IIQCQSGHLVCSNCRPKLS---CCSTCRGPLG 78 (446)
Q Consensus 32 ~l~~~l~C~iC~~~l~~--P-v~qC~~GH~~C~~C~~~~~---~CP~Cr~~~~ 78 (446)
.-...|.|||....|.. + ++.=.|||+|+..++..+. .||+|.+++.
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFT 161 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccc
Confidence 35678999999999954 3 2333569999999999875 7999999986
No 92
>KOG1571|consensus
Probab=63.42 E-value=2.7 Score=42.18 Aligned_cols=48 Identities=27% Similarity=0.623 Sum_probs=34.3
Q ss_pred ccCCCCceecccccCcCcCccccccccceec-cCcccCCCCCCCCCCCCc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVC-SNCRPKLSCCSTCRGPLG 78 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C-~~C~~~~~~CP~Cr~~~~ 78 (446)
..++.-...|.||.+-..+.++ =+|||.-| -.|...++.||+||+.+.
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~f-vpcGh~ccct~cs~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVF-VPCGHVCCCTLCSKHLPQCPVCRQRIR 347 (355)
T ss_pred ccccCCCCceEEecCCccceee-ecCCcEEEchHHHhhCCCCchhHHHHH
Confidence 3445556789999999888764 24599654 444556789999998764
No 93
>KOG0978|consensus
Probab=62.92 E-value=1.5 Score=47.92 Aligned_cols=46 Identities=15% Similarity=0.462 Sum_probs=33.1
Q ss_pred hHHHHHHhcCcccccceeeeccCcccccCcccCC-----CCCCCCCCCCCc
Q psy17006 202 FFAIVQLIGSRKQAEHFTYCQSGHLVCSNCRPKL-----SCCSTCRGPLGN 247 (446)
Q Consensus 202 ~~~~~q~~g~~~~~~~~~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~ 247 (446)
|-+++.+.-+...++..-.=.+||+||..|..+. .+||.|...|+.
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3334444445555566566678999999999863 599999999986
No 94
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=62.62 E-value=4 Score=24.98 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=11.6
Q ss_pred ecccccCcCcCcccccc-cccee
Q psy17006 38 ECPVCFDYVLPPIIQCQ-SGHLV 59 (446)
Q Consensus 38 ~C~iC~~~l~~Pv~qC~-~GH~~ 59 (446)
.||.|...+..-...|. |||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 36666666643333454 56654
No 95
>KOG4185|consensus
Probab=61.67 E-value=4.9 Score=39.64 Aligned_cols=55 Identities=31% Similarity=0.699 Sum_probs=37.6
Q ss_pred ceecccccCcCcC------cc-ccccccceeccCcccCC-----CCCCCCCCCC--cc------ccchHHHHHhhhc
Q psy17006 36 LFECPVCFDYVLP------PI-IQCQSGHLVCSNCRPKL-----SCCSTCRGPL--GN------IRNLAMEKVAETV 92 (446)
Q Consensus 36 ~l~C~iC~~~l~~------Pv-~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~--~~------~~~~~~e~~~~~l 92 (446)
.+.|-||.+.+.. |. +. |||.+|..|..++ ..||.||.+. .. ..|.++-..+...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~--c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLK--CGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccc--cCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 4678888877742 53 34 4999999999985 3689999984 21 2455555555443
No 96
>KOG3800|consensus
Probab=60.48 E-value=3.5 Score=40.16 Aligned_cols=53 Identities=26% Similarity=0.654 Sum_probs=35.2
Q ss_pred ecccccCc-CcCc-c--ccccccceeccCcccCC-----CCCCCCCCCCc-------cccchHHHHHhh
Q psy17006 38 ECPVCFDY-VLPP-I--IQCQSGHLVCSNCRPKL-----SCCSTCRGPLG-------NIRNLAMEKVAE 90 (446)
Q Consensus 38 ~C~iC~~~-l~~P-v--~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~-------~~~~~~~e~~~~ 90 (446)
.||+|..- ...| + +.-.|||..|.+|...+ ..||.|...+. .+.+..+++.+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~q~fED~~vekEv~ 70 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRVQTFEDPTVEKEVD 70 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccchhhcchhHHHHHHH
Confidence 48899643 3444 2 23367999999999875 58999998763 134555555543
No 97
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=59.01 E-value=7.9 Score=28.56 Aligned_cols=36 Identities=36% Similarity=0.874 Sum_probs=20.6
Q ss_pred hcccCcccCCCCCeEe-ecCCCchhHHhhCCCCCccCCCCCCCcccccC
Q psy17006 259 TVTFPCRYQMNGCNVV-LLHTEKPEHEDACEYRPYHCPCPGASCKWSGA 306 (446)
Q Consensus 259 ~~~~~C~~~~~GC~~~-~~~~~l~~He~~C~~~~~~Cp~~~~~C~~~g~ 306 (446)
.+.++||+ |++. |.|...=.-+ ..+|.|| .|+|.|+
T Consensus 23 ~~~F~CPn----CG~~~I~RC~~CRk~----~~~Y~CP----~CGF~GP 59 (59)
T PRK14890 23 AVKFLCPN----CGEVIIYRCEKCRKQ----SNPYTCP----KCGFEGP 59 (59)
T ss_pred cCEeeCCC----CCCeeEeechhHHhc----CCceECC----CCCCcCc
Confidence 35667776 6654 5543221111 2577888 5888874
No 98
>KOG0825|consensus
Probab=58.81 E-value=1.5 Score=48.01 Aligned_cols=42 Identities=24% Similarity=0.633 Sum_probs=30.0
Q ss_pred eecccccCcCcCccc--cccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 37 FECPVCFDYVLPPII--QCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 37 l~C~iC~~~l~~Pv~--qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
-.||+|..-..+-.. --.|+|.||..|+..+ ..||+||..+.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 358888776655321 1134999999999875 58999998764
No 99
>KOG0804|consensus
Probab=58.53 E-value=4.8 Score=41.50 Aligned_cols=46 Identities=30% Similarity=0.574 Sum_probs=35.5
Q ss_pred cCCCCceecccccCcCcCcc---ccccccceeccCcccCC--CCCCCCCCC
Q psy17006 31 TDLASLFECPVCFDYVLPPI---IQCQSGHLVCSNCRPKL--SCCSTCRGP 76 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv---~qC~~GH~~C~~C~~~~--~~CP~Cr~~ 76 (446)
..+.+.-.||+|++=|-+-+ +.-.|.|.|=.+|+.++ ..||+||--
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~ 220 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYC 220 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhh
Confidence 35567789999999997644 33345899988999987 589999963
No 100
>KOG2462|consensus
Probab=58.51 E-value=7.5 Score=37.69 Aligned_cols=100 Identities=20% Similarity=0.417 Sum_probs=68.6
Q ss_pred CCceecccccCcCcC-ccccccccceeccCcccCC-CCCCCCCCCCccccchHHHHHh----hhccccccccCCCCeeee
Q psy17006 34 ASLFECPVCFDYVLP-PIIQCQSGHLVCSNCRPKL-SCCSTCRGPLGNIRNLAMEKVA----ETVTFPCRYQMNGCNVVL 107 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~-Pv~qC~~GH~~C~~C~~~~-~~CP~Cr~~~~~~~~~~~e~~~----~~l~v~C~~~~~GC~~~~ 107 (446)
...+.|++|..+... |-+. .|+-= ..+ -.|++|.+.+. |...|+.-| .+-++.|+. |+..+
T Consensus 159 ~ka~~C~~C~K~YvSmpALk---MHirT----H~l~c~C~iCGKaFS--RPWLLQGHiRTHTGEKPF~C~h----C~kAF 225 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALK---MHIRT----HTLPCECGICGKAFS--RPWLLQGHIRTHTGEKPFSCPH----CGKAF 225 (279)
T ss_pred cccccCCCCCceeeehHHHh---hHhhc----cCCCccccccccccc--chHHhhcccccccCCCCccCCc----ccchh
Confidence 455778888777643 3221 22210 001 27999998775 666666554 467889996 98777
Q ss_pred c-CCChhhHhh-hCCCccccCCCCCCCCccccCh-hHHHHHHhhcC
Q psy17006 108 L-HTEKPEHED-ACEYRPYHCPCPGASCKWSGAL-DQVMGHLNQSH 150 (446)
Q Consensus 108 ~-~~~~~~H~~-~C~~~~v~Cp~~~~~C~~~~~~-~~l~~H~~~~h 150 (446)
- ..+|++|+. -=..+.+.|+ .|+....+ ..|.+|++..|
T Consensus 226 ADRSNLRAHmQTHS~~K~~qC~----~C~KsFsl~SyLnKH~ES~C 267 (279)
T KOG2462|consen 226 ADRSNLRAHMQTHSDVKKHQCP----RCGKSFALKSYLNKHSESAC 267 (279)
T ss_pred cchHHHHHHHHhhcCCccccCc----chhhHHHHHHHHHHhhhhcc
Confidence 6 689999995 5567789998 59998765 56788998766
No 101
>KOG1785|consensus
Probab=58.24 E-value=2.5 Score=42.81 Aligned_cols=43 Identities=30% Similarity=0.675 Sum_probs=32.0
Q ss_pred Ccee-cccccCcCcCccccccccceeccCcccCC------CCCCCCCCCCc
Q psy17006 35 SLFE-CPVCFDYVLPPIIQCQSGHLVCSNCRPKL------SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~-C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~------~~CP~Cr~~~~ 78 (446)
..|+ |.||.+-=++=. .=.|||+.|..|+..+ ..||.||..+.
T Consensus 367 sTFeLCKICaendKdvk-IEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 367 STFELCKICAENDKDVK-IEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred chHHHHHHhhccCCCcc-cccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 3444 999988776642 2346999999998764 47999998764
No 102
>KOG1812|consensus
Probab=57.71 E-value=6.3 Score=40.61 Aligned_cols=32 Identities=25% Similarity=0.545 Sum_probs=22.4
Q ss_pred Cceeccccc-CcCcCcc--ccccccceeccCcccC
Q psy17006 35 SLFECPVCF-DYVLPPI--IQCQSGHLVCSNCRPK 66 (446)
Q Consensus 35 ~~l~C~iC~-~~l~~Pv--~qC~~GH~~C~~C~~~ 66 (446)
...+|.||. +...... ....|||.||..|+.+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~ 179 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQ 179 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHH
Confidence 367899999 4443322 1345799999999985
No 103
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=57.57 E-value=4.4 Score=33.35 Aligned_cols=40 Identities=25% Similarity=0.623 Sum_probs=15.1
Q ss_pred eecccccCcCc--Ccc-ccccccceeccCcccCC--------CCCCCCCCCC
Q psy17006 37 FECPVCFDYVL--PPI-IQCQSGHLVCSNCRPKL--------SCCSTCRGPL 77 (446)
Q Consensus 37 l~C~iC~~~l~--~Pv-~qC~~GH~~C~~C~~~~--------~~CP~Cr~~~ 77 (446)
=.|++|...+. ++. .+|.+||.+ ..|.... ..|+.|....
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w-~RC~lT~l~i~~~~~r~C~~C~~~~ 65 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVW-PRCALTFLPIQTPGVRVCPVCGRRA 65 (99)
T ss_dssp --------------SSEEE-TTS-EE-EB-SSS-SBS-SS-EEE-TTT--EE
T ss_pred ccccccccccccCCcCEeECCCCCEE-eeeeeeeeeeccCCeeEcCCCCCEE
Confidence 35999999773 443 589999997 8886652 4799998754
No 104
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=56.94 E-value=4.9 Score=37.11 Aligned_cols=29 Identities=28% Similarity=0.647 Sum_probs=22.6
Q ss_pred eeeccCcccccCcccC--------------------CCCCCCCCCCCCc
Q psy17006 219 TYCQSGHLVCSNCRPK--------------------LSCCSTCRGPLGN 247 (446)
Q Consensus 219 ~~C~~gh~~C~~C~~~--------------------~~~Cp~Cr~~~~~ 247 (446)
..-++||++|..|..+ ...||.||.++..
T Consensus 32 VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 32 VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3457899999999853 1379999999874
No 105
>KOG3579|consensus
Probab=53.57 E-value=10 Score=36.89 Aligned_cols=32 Identities=25% Similarity=0.654 Sum_probs=26.9
Q ss_pred CceecccccCcCcCcc-ccccc--cceeccCcccC
Q psy17006 35 SLFECPVCFDYVLPPI-IQCQS--GHLVCSNCRPK 66 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv-~qC~~--GH~~C~~C~~~ 66 (446)
.-|.|-+|.+-|.+-- +||.. .|-||-.|-..
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSRe 301 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRE 301 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHH
Confidence 4599999999999875 59974 89999999654
No 106
>KOG3039|consensus
Probab=51.85 E-value=6.8 Score=37.29 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=30.6
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccC
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK 66 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 66 (446)
.+.+.+.-.|..|+.+.++|| .|..||+||..||..
T Consensus 37 rDsiK~FdcCsLtLqPc~dPv-it~~GylfdrEaILe 72 (303)
T KOG3039|consen 37 RDSIKPFDCCSLTLQPCRDPV-ITPDGYLFDREAILE 72 (303)
T ss_pred ccccCCcceeeeecccccCCc-cCCCCeeeeHHHHHH
Confidence 456666677999999999998 788899999999864
No 107
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=51.11 E-value=7.3 Score=28.26 Aligned_cols=42 Identities=26% Similarity=0.536 Sum_probs=30.6
Q ss_pred ceecccccCcC--cCcccccc-ccceeccCcccCCCCCCC--CCCCC
Q psy17006 36 LFECPVCFDYV--LPPIIQCQ-SGHLVCSNCRPKLSCCST--CRGPL 77 (446)
Q Consensus 36 ~l~C~iC~~~l--~~Pv~qC~-~GH~~C~~C~~~~~~CP~--Cr~~~ 77 (446)
.-.|++|.+.+ .+.+++|. ||-.+=+.|+.+...|-. |.+++
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAGGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhhCCceEeccCCCCc
Confidence 45799999999 56777885 675555678888777766 66554
No 108
>KOG4275|consensus
Probab=50.19 E-value=3.4 Score=40.22 Aligned_cols=25 Identities=28% Similarity=0.895 Sum_probs=21.3
Q ss_pred ccCcc-cccCcccCCCCCCCCCCCCC
Q psy17006 222 QSGHL-VCSNCRPKLSCCSTCRGPLG 246 (446)
Q Consensus 222 ~~gh~-~C~~C~~~~~~Cp~Cr~~~~ 246 (446)
++||. .|-+|.+++..||.||+.+.
T Consensus 317 eCGHmVtCt~CGkrm~eCPICRqyi~ 342 (350)
T KOG4275|consen 317 ECGHMVTCTKCGKRMNECPICRQYIV 342 (350)
T ss_pred ecCcEEeehhhccccccCchHHHHHH
Confidence 56884 89999999999999997653
No 109
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.96 E-value=4.1 Score=36.08 Aligned_cols=21 Identities=33% Similarity=0.933 Sum_probs=16.9
Q ss_pred ccccCcccCC-CCCCCCCCCCC
Q psy17006 226 LVCSNCRPKL-SCCSTCRGPLG 246 (446)
Q Consensus 226 ~~C~~C~~~~-~~Cp~Cr~~~~ 246 (446)
-+|++|..+. ..||.|..++.
T Consensus 29 ~fC~kCG~~tI~~Cp~C~~~Ir 50 (158)
T PF10083_consen 29 KFCSKCGAKTITSCPNCSTPIR 50 (158)
T ss_pred HHHHHhhHHHHHHCcCCCCCCC
Confidence 4688898884 68999998875
No 110
>KOG1814|consensus
Probab=48.59 E-value=8.7 Score=39.30 Aligned_cols=85 Identities=20% Similarity=0.421 Sum_probs=50.3
Q ss_pred CCCCceecccccCcCcCcc--ccccccceeccCcccCC------------CCCCCCCCCCcc--------------cc--
Q psy17006 32 DLASLFECPVCFDYVLPPI--IQCQSGHLVCSNCRPKL------------SCCSTCRGPLGN--------------IR-- 81 (446)
Q Consensus 32 ~l~~~l~C~iC~~~l~~Pv--~qC~~GH~~C~~C~~~~------------~~CP~Cr~~~~~--------------~~-- 81 (446)
-+..++.|.||++-..-.+ +--+|+|.||++|.... -+||.+.-+-.. .|
T Consensus 180 F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g~vKelvg~EL~arYe 259 (445)
T KOG1814|consen 180 FVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPGQVKELVGDELFARYE 259 (445)
T ss_pred HHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCchHHHHHHHHHHHHHHH
Confidence 3467899999998886532 22356999999998751 378875432110 01
Q ss_pred chHHHHHhhhcc--ccccccCCCCeeeecCCChhhHhhhC
Q psy17006 82 NLAMEKVAETVT--FPCRYQMNGCNVVLLHTEKPEHEDAC 119 (446)
Q Consensus 82 ~~~~e~~~~~l~--v~C~~~~~GC~~~~~~~~~~~H~~~C 119 (446)
-..+++.+..+. ++||+. -|..-. ..+...-+..|
T Consensus 260 ~l~lqk~l~~msdv~yCPr~--~Cq~p~-~~d~~~~l~~C 296 (445)
T KOG1814|consen 260 KLMLQKTLELMSDVVYCPRA--CCQLPV-KQDPGRALAIC 296 (445)
T ss_pred HHHHHHHHHhhcccccCChh--hccCcc-ccCchhhhhhh
Confidence 223444555555 899985 455333 44444444433
No 111
>PHA02926 zinc finger-like protein; Provisional
Probab=47.53 E-value=3.3 Score=38.97 Aligned_cols=27 Identities=30% Similarity=0.719 Sum_probs=21.3
Q ss_pred ccCcccccCcccCC----------CCCCCCCCCCCcc
Q psy17006 222 QSGHLVCSNCRPKL----------SCCSTCRGPLGNI 248 (446)
Q Consensus 222 ~~gh~~C~~C~~~~----------~~Cp~Cr~~~~~~ 248 (446)
+++|++|-.|..+. ..||.||..+..+
T Consensus 196 ~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 196 SCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred CCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 56999999998742 2499999987753
No 112
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=47.45 E-value=17 Score=22.10 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=16.6
Q ss_pred ccCCCCCCCCccccChhHHHHHHhhc
Q psy17006 124 YHCPCPGASCKWSGALDQVMGHLNQS 149 (446)
Q Consensus 124 v~Cp~~~~~C~~~~~~~~l~~H~~~~ 149 (446)
+.|| -|++......+..|+..|
T Consensus 2 v~CP----iC~~~v~~~~in~HLD~C 23 (26)
T smart00734 2 VQCP----VCFREVPENLINSHLDSC 23 (26)
T ss_pred CcCC----CCcCcccHHHHHHHHHHh
Confidence 5677 488888888888888754
No 113
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=46.39 E-value=16 Score=26.06 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=14.2
Q ss_pred CCCccCCCCceecccccC
Q psy17006 27 PGTSTDLASLFECPVCFD 44 (446)
Q Consensus 27 ~~~~~~l~~~l~C~iC~~ 44 (446)
.+.-++|.+.+.||+|..
T Consensus 25 Gt~f~~Lp~~w~CP~C~a 42 (50)
T cd00730 25 GTPFEDLPDDWVCPVCGA 42 (50)
T ss_pred CCCHhHCCCCCCCCCCCC
Confidence 344578999999999975
No 114
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=46.03 E-value=14 Score=27.27 Aligned_cols=36 Identities=36% Similarity=0.880 Sum_probs=20.9
Q ss_pred hcccCcccCCCCCe-EeecCCCchhHHhhCCCCCccCCCCCCCcccccC
Q psy17006 259 TVTFPCRYQMNGCN-VVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGA 306 (446)
Q Consensus 259 ~~~~~C~~~~~GC~-~~~~~~~l~~He~~C~~~~~~Cp~~~~~C~~~g~ 306 (446)
.+.++||+ |+ ..|-|.+.-.-+ -.+|.|| +|+|+|+
T Consensus 25 ~v~F~CPn----CGe~~I~Rc~~CRk~----g~~Y~Cp----~CGF~GP 61 (61)
T COG2888 25 AVKFPCPN----CGEVEIYRCAKCRKL----GNPYRCP----KCGFEGP 61 (61)
T ss_pred eeEeeCCC----CCceeeehhhhHHHc----CCceECC----CcCccCC
Confidence 35677776 76 344444332221 2467788 5888874
No 115
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=45.78 E-value=12 Score=30.21 Aligned_cols=36 Identities=28% Similarity=0.645 Sum_probs=29.9
Q ss_pred eecccccCcCcCccccccccceeccCcccCCCCCCCCCCCCc
Q psy17006 37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPLG 78 (446)
Q Consensus 37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~CP~Cr~~~~ 78 (446)
-.|-||..-+..| |+.+|..|--+...|.+|...+.
T Consensus 45 ~~C~~CK~~v~q~------g~~YCq~CAYkkGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQP------GAKYCQTCAYKKGICAMCGKKIL 80 (90)
T ss_pred ccccccccccccC------CCccChhhhcccCcccccCCeec
Confidence 3699998776554 89999999888899999998774
No 116
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=45.27 E-value=9.8 Score=37.98 Aligned_cols=46 Identities=22% Similarity=0.534 Sum_probs=34.0
Q ss_pred ccCCCCceecccccCcCcC-ccccccccceeccCcccCC------CCCCCCCCCC
Q psy17006 30 STDLASLFECPVCFDYVLP-PIIQCQSGHLVCSNCRPKL------SCCSTCRGPL 77 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~-Pv~qC~~GH~~C~~C~~~~------~~CP~Cr~~~ 77 (446)
++.-++.-.|.||..-+.- .++. |||..|..|.-++ ..||.||...
T Consensus 55 ddtDEen~~C~ICA~~~TYs~~~P--C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 55 DDTDEENMNCQICAGSTTYSARYP--CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccccceeEEecCCceEEEecc--CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3344567789999887753 3444 5999999998764 5899999854
No 117
>KOG4692|consensus
Probab=44.99 E-value=4.5 Score=40.42 Aligned_cols=43 Identities=19% Similarity=0.517 Sum_probs=33.2
Q ss_pred CceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
+.-.||||.---...|+ .+|||.-|..|+.+. ..|-.|+..+.
T Consensus 421 Ed~lCpICyA~pi~Avf-~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVF-APCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhc-cCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 45679999887777774 467999999999974 46777887553
No 118
>KOG4628|consensus
Probab=44.97 E-value=14 Score=37.29 Aligned_cols=42 Identities=17% Similarity=0.441 Sum_probs=31.4
Q ss_pred eecccccCcCcC--ccccccccceeccCcccCC-----CCCCCCCCCCc
Q psy17006 37 FECPVCFDYVLP--PIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLG 78 (446)
Q Consensus 37 l~C~iC~~~l~~--Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~ 78 (446)
..|.||.+-+.+ -+..=+|+|.|=..|+..+ ..||+|+..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 799999998864 2211234899989999875 35999998764
No 119
>KOG1001|consensus
Probab=43.64 E-value=6.4 Score=43.52 Aligned_cols=40 Identities=30% Similarity=0.628 Sum_probs=31.9
Q ss_pred eecccccCcCcCccccccccceeccCcccCC------CCCCCCCCCCc
Q psy17006 37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL------SCCSTCRGPLG 78 (446)
Q Consensus 37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~------~~CP~Cr~~~~ 78 (446)
+.|++|.+ +..++ ...|||.+|..|+... ..||.||..+.
T Consensus 455 ~~c~ic~~-~~~~~-it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFF-ITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccce-eecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 89999999 66665 5567999999999874 36999987553
No 120
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=43.31 E-value=11 Score=36.63 Aligned_cols=24 Identities=21% Similarity=0.623 Sum_probs=18.5
Q ss_pred ceecccccCcCc--Ccccccccccee
Q psy17006 36 LFECPVCFDYVL--PPIIQCQSGHLV 59 (446)
Q Consensus 36 ~l~C~iC~~~l~--~Pv~qC~~GH~~ 59 (446)
.|.||+|...|. +.-+.|.+||.|
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCC
Confidence 378999999995 233578888876
No 121
>KOG0826|consensus
Probab=43.02 E-value=8.7 Score=38.12 Aligned_cols=44 Identities=25% Similarity=0.464 Sum_probs=32.7
Q ss_pred CCceecccccCcCcCccccccccceeccCcccC----CCCCCCCCCCC
Q psy17006 34 ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----LSCCSTCRGPL 77 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~----~~~CP~Cr~~~ 77 (446)
.+.-.||+|..-..+|-.--..|-.||-.|+.+ ...||+=..|.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 456679999999988852334699999999876 36898744443
No 122
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.02 E-value=8 Score=32.92 Aligned_cols=21 Identities=24% Similarity=0.797 Sum_probs=16.2
Q ss_pred ccccCcccC-CCCCCCCCCCCC
Q psy17006 226 LVCSNCRPK-LSCCSTCRGPLG 246 (446)
Q Consensus 226 ~~C~~C~~~-~~~Cp~Cr~~~~ 246 (446)
.+|+.|..- +.+||.|..++-
T Consensus 29 afcskcgeati~qcp~csasir 50 (160)
T COG4306 29 AFCSKCGEATITQCPICSASIR 50 (160)
T ss_pred HHHhhhchHHHhcCCccCCccc
Confidence 368888876 578999988763
No 123
>KOG2932|consensus
Probab=42.27 E-value=15 Score=36.30 Aligned_cols=70 Identities=19% Similarity=0.356 Sum_probs=43.2
Q ss_pred CccCCCC-ceecccccCcCcCccccccccceeccCcccCC--CCCCCCCCCCccccchHHHHHhhhccccccccCCCCe
Q psy17006 29 TSTDLAS-LFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCN 104 (446)
Q Consensus 29 ~~~~l~~-~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~CP~Cr~~~~~~~~~~~e~~~~~l~v~C~~~~~GC~ 104 (446)
++.++.. .--|.-|...+..-=..=.|-|.||-.|...- ..||.|..++.. +|.....-.+-|. ...||.
T Consensus 82 gek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~Vqr-----Ieq~~~g~iFmC~-~~~GC~ 154 (389)
T KOG2932|consen 82 GEKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQR-----IEQIMMGGIFMCA-APHGCL 154 (389)
T ss_pred cccccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHH-----HHHhcccceEEee-cchhHH
Confidence 3566666 44588998877532112234899999997653 589999886642 3444444456665 334554
No 124
>KOG4739|consensus
Probab=41.94 E-value=14 Score=35.11 Aligned_cols=33 Identities=18% Similarity=0.536 Sum_probs=26.1
Q ss_pred ccceeeeccCcccccCcccCC-C-CCCCCCCCCCc
Q psy17006 215 AEHFTYCQSGHLVCSNCRPKL-S-CCSTCRGPLGN 247 (446)
Q Consensus 215 ~~~~~~C~~gh~~C~~C~~~~-~-~Cp~Cr~~~~~ 247 (446)
...++.-.++|++|+.|..-- + .||.|+..+..
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIRI 49 (233)
T ss_pred CCceeeeechhhhhhhhcccCCccccccccceeee
Confidence 445667778999999999874 3 89999998643
No 125
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=41.64 E-value=4.3 Score=45.53 Aligned_cols=48 Identities=23% Similarity=0.562 Sum_probs=31.6
Q ss_pred cCCCCceecccccCcCc-----Ccccccc-ccceeccCcccCC------CCCCCCCCCCc
Q psy17006 31 TDLASLFECPVCFDYVL-----PPIIQCQ-SGHLVCSNCRPKL------SCCSTCRGPLG 78 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~-----~Pv~qC~-~GH~~C~~C~~~~------~~CP~Cr~~~~ 78 (446)
......-+|+||..++. -|--.|. |-|-|=++|+-++ .+||.||..++
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34455567999999985 2433452 4555556666553 58999998664
No 126
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=41.57 E-value=4.6 Score=28.66 Aligned_cols=41 Identities=27% Similarity=0.716 Sum_probs=29.3
Q ss_pred CceecccccCcCcCc-ccccc-ccceeccCcccCC-CCCCCCCC
Q psy17006 35 SLFECPVCFDYVLPP-IIQCQ-SGHLVCSNCRPKL-SCCSTCRG 75 (446)
Q Consensus 35 ~~l~C~iC~~~l~~P-v~qC~-~GH~~C~~C~~~~-~~CP~Cr~ 75 (446)
..|.|..|....-.. ..||. ||...|.+||+.- -.|-.|..
T Consensus 6 sry~CDLCn~~~p~~~LRQCvlCGRWaC~sCW~deYY~CksC~G 49 (57)
T PF14445_consen 6 SRYSCDLCNSSHPISELRQCVLCGRWACNSCWQDEYYTCKSCNG 49 (57)
T ss_pred hhHhHHhhcccCcHHHHHHHhhhchhhhhhhhhhhHhHHHhhhc
Confidence 458899998876433 34885 8999999999863 35555554
No 127
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=40.35 E-value=15 Score=25.70 Aligned_cols=38 Identities=11% Similarity=0.328 Sum_probs=28.4
Q ss_pred CCCCCCCCCccccchHHHHHhhhccccccccCCCCeeeec
Q psy17006 69 CCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLL 108 (446)
Q Consensus 69 ~CP~Cr~~~~~~~~~~~e~~~~~l~v~C~~~~~GC~~~~~ 108 (446)
.||.|..+........+...+.++...|.|. -|++.+.
T Consensus 1 ~CP~Cg~~a~ir~S~~~s~~~~~~Y~qC~N~--~Cg~tfv 38 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQLSPLTRELYCQCTNP--ECGHTFV 38 (47)
T ss_pred CcCCCCCeeEEEEchhhCcceEEEEEEECCC--cCCCEEE
Confidence 5999998775455667778888899999986 4665554
No 128
>KOG1645|consensus
Probab=40.30 E-value=9.4 Score=39.01 Aligned_cols=42 Identities=33% Similarity=0.608 Sum_probs=32.0
Q ss_pred ceecccccCcCcCcccc----ccccceeccCcccCC------CCCCCCCCCC
Q psy17006 36 LFECPVCFDYVLPPIIQ----CQSGHLVCSNCRPKL------SCCSTCRGPL 77 (446)
Q Consensus 36 ~l~C~iC~~~l~~Pv~q----C~~GH~~C~~C~~~~------~~CP~Cr~~~ 77 (446)
--.||||++-..-|.-. =.|||.|=++|++++ ..||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 35799999988766411 134999999999985 4899998753
No 129
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=38.42 E-value=20 Score=38.07 Aligned_cols=69 Identities=23% Similarity=0.520 Sum_probs=40.8
Q ss_pred CCCceecccccCcCcCcccccc---ccceeccCcccCC----------------CCCCCCCCCCcccc-ch-------HH
Q psy17006 33 LASLFECPVCFDYVLPPIIQCQ---SGHLVCSNCRPKL----------------SCCSTCRGPLGNIR-NL-------AM 85 (446)
Q Consensus 33 l~~~l~C~iC~~~l~~Pv~qC~---~GH~~C~~C~~~~----------------~~CP~Cr~~~~~~~-~~-------~~ 85 (446)
|.+.|-|..|..+-. |. |. ---.||..|+... ..||.|..++.... +. .-
T Consensus 2 l~~L~fC~~C~~irc-~~--c~~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~~~~~~~~~~~~~~~ 78 (483)
T PF05502_consen 2 LEELYFCEHCHKIRC-PR--CVSEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSVRASDTPPSPPDPSS 78 (483)
T ss_pred cccceecccccccCC-hh--hcccccceeECccccccCChhhheeccceeccccccCCCCCCcceeEecccccccccccc
Confidence 556777888877654 32 21 1346788887542 26999998875321 11 11
Q ss_pred HHHhhhccccccccCCCCeeeec
Q psy17006 86 EKVAETVTFPCRYQMNGCNVVLL 108 (446)
Q Consensus 86 e~~~~~l~v~C~~~~~GC~~~~~ 108 (446)
...-....+.|.| |.|.-.
T Consensus 79 ~~~~~~~~l~C~~----C~Wss~ 97 (483)
T PF05502_consen 79 DSGGKPYYLSCSY----CRWSSR 97 (483)
T ss_pred cCCCCCEEEECCC----ceeecc
Confidence 1222356678997 999643
No 130
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.09 E-value=48 Score=27.88 Aligned_cols=38 Identities=26% Similarity=0.651 Sum_probs=27.1
Q ss_pred eecccccCcCcCc------------ccccc-ccceeccCccc----CCCCCCCCC
Q psy17006 37 FECPVCFDYVLPP------------IIQCQ-SGHLVCSNCRP----KLSCCSTCR 74 (446)
Q Consensus 37 l~C~iC~~~l~~P------------v~qC~-~GH~~C~~C~~----~~~~CP~Cr 74 (446)
-.|--|...+..+ .|+|. |++.||.+|-. .+..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 3588898877543 36785 68899998854 346888886
No 131
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=38.06 E-value=18 Score=21.29 Aligned_cols=17 Identities=35% Similarity=1.159 Sum_probs=9.2
Q ss_pred ccCcccCC----CCCCCCCCC
Q psy17006 228 CSNCRPKL----SCCSTCRGP 244 (446)
Q Consensus 228 C~~C~~~~----~~Cp~Cr~~ 244 (446)
|..|...+ ..||.|..+
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 55566554 246666544
No 132
>KOG0823|consensus
Probab=37.77 E-value=12 Score=35.32 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=25.1
Q ss_pred ccceeeeccCcccccCcccCC-------CCCCCCCCCCCc
Q psy17006 215 AEHFTYCQSGHLVCSNCRPKL-------SCCSTCRGPLGN 247 (446)
Q Consensus 215 ~~~~~~C~~gh~~C~~C~~~~-------~~Cp~Cr~~~~~ 247 (446)
++..-.-.+||++|=.|..+. ..||+|+..++.
T Consensus 57 akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 57 AKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred cCCCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 344444567999999999873 368999998874
No 133
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=37.55 E-value=14 Score=26.05 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=10.7
Q ss_pred CCccCCCCceecccccCc
Q psy17006 28 GTSTDLASLFECPVCFDY 45 (446)
Q Consensus 28 ~~~~~l~~~l~C~iC~~~ 45 (446)
+.-++|.+.+.||+|...
T Consensus 26 t~F~~Lp~~w~CP~C~a~ 43 (47)
T PF00301_consen 26 TPFEDLPDDWVCPVCGAP 43 (47)
T ss_dssp --GGGS-TT-B-TTTSSB
T ss_pred CCHHHCCCCCcCcCCCCc
Confidence 446889999999999753
No 134
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=37.31 E-value=19 Score=26.96 Aligned_cols=32 Identities=25% Similarity=0.612 Sum_probs=15.8
Q ss_pred CceecccccCcCcC--cccccc-ccceeccCcccC
Q psy17006 35 SLFECPVCFDYVLP--PIIQCQ-SGHLVCSNCRPK 66 (446)
Q Consensus 35 ~~l~C~iC~~~l~~--Pv~qC~-~GH~~C~~C~~~ 66 (446)
+.-.|.+|...+.- --..|. ||++||+.|...
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 34579999888732 224685 799999999864
No 135
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=36.29 E-value=21 Score=24.38 Aligned_cols=32 Identities=28% Similarity=0.661 Sum_probs=17.3
Q ss_pred ccc--ccCcCcCcccccc-ccceeccCcccCC-CCCC
Q psy17006 39 CPV--CFDYVLPPIIQCQ-SGHLVCSNCRPKL-SCCS 71 (446)
Q Consensus 39 C~i--C~~~l~~Pv~qC~-~GH~~C~~C~~~~-~~CP 71 (446)
|.. |...+.-|+ .|. ||..||..=+... -.|+
T Consensus 1 C~~~~C~~~~~~~~-~C~~C~~~FC~~Hr~~e~H~C~ 36 (43)
T PF01428_consen 1 CSFPGCKKKDFLPF-KCKHCGKSFCLKHRLPEDHNCS 36 (43)
T ss_dssp -SSTTT--BCTSHE-E-TTTS-EE-TTTHSTTTCT-S
T ss_pred CccCcCcCccCCCe-ECCCCCcccCccccCccccCCc
Confidence 445 888777786 887 8999998876543 2443
No 136
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.85 E-value=32 Score=22.04 Aligned_cols=9 Identities=33% Similarity=1.006 Sum_probs=6.1
Q ss_pred CCCCCCCCC
Q psy17006 68 SCCSTCRGP 76 (446)
Q Consensus 68 ~~CP~Cr~~ 76 (446)
..||+|..+
T Consensus 18 ~~CP~Cg~~ 26 (33)
T cd00350 18 WVCPVCGAP 26 (33)
T ss_pred CcCcCCCCc
Confidence 478888764
No 137
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=35.50 E-value=23 Score=22.97 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=16.7
Q ss_pred cccCCCCCCCCccccChhHHHHHHhhc
Q psy17006 123 PYHCPCPGASCKWSGALDQVMGHLNQS 149 (446)
Q Consensus 123 ~v~Cp~~~~~C~~~~~~~~l~~H~~~~ 149 (446)
.+.||+ |+-.+...-+..||+.|
T Consensus 4 ~~~C~n----C~R~v~a~RfA~HLekC 26 (33)
T PF08209_consen 4 YVECPN----CGRPVAASRFAPHLEKC 26 (33)
T ss_dssp EEE-TT----TSSEEEGGGHHHHHHHH
T ss_pred eEECCC----CcCCcchhhhHHHHHHH
Confidence 456774 88888888888888776
No 138
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=35.48 E-value=23 Score=23.82 Aligned_cols=23 Identities=30% Similarity=0.762 Sum_probs=15.3
Q ss_pred cccccCcCcC-cccccc-ccceeccC
Q psy17006 39 CPVCFDYVLP-PIIQCQ-SGHLVCSN 62 (446)
Q Consensus 39 C~iC~~~l~~-Pv~qC~-~GH~~C~~ 62 (446)
|.+|.....- |+ .|. ||..||..
T Consensus 1 C~~C~~~~~l~~f-~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGF-KCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCe-ECCccCCccccc
Confidence 5566655544 75 787 78888764
No 139
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=35.30 E-value=22 Score=21.52 Aligned_cols=20 Identities=30% Similarity=0.991 Sum_probs=12.2
Q ss_pred ccccCcccCC----CCCCCCCCCC
Q psy17006 226 LVCSNCRPKL----SCCSTCRGPL 245 (446)
Q Consensus 226 ~~C~~C~~~~----~~Cp~Cr~~~ 245 (446)
+.|.+|...+ ..||.|..+|
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred CCCcccCCcCCcccccChhhCCCC
Confidence 4577777654 3577776543
No 140
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=34.88 E-value=11 Score=26.78 Aligned_cols=40 Identities=25% Similarity=0.574 Sum_probs=19.2
Q ss_pred eecccccCcCcCccccccccceeccCcccC--------CCCCCCCCCC
Q psy17006 37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPK--------LSCCSTCRGP 76 (446)
Q Consensus 37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~--------~~~CP~Cr~~ 76 (446)
|.||+-...+..|+.--.|-|.-|-+=..- .-.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 789999999999985444578754222110 1369999864
No 141
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=34.87 E-value=26 Score=28.42 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=26.6
Q ss_pred CCCCceecccccCcCcCcc-ccccccceeccCcccC
Q psy17006 32 DLASLFECPVCFDYVLPPI-IQCQSGHLVCSNCRPK 66 (446)
Q Consensus 32 ~l~~~l~C~iC~~~l~~Pv-~qC~~GH~~C~~C~~~ 66 (446)
.+.+.-.|++|...+.... ...++||.+-..|..+
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 4456667999999998654 3556799999998753
No 142
>KOG2932|consensus
Probab=34.42 E-value=9.9 Score=37.41 Aligned_cols=57 Identities=21% Similarity=0.475 Sum_probs=38.3
Q ss_pred ccCcccccCcccCC--CCCCCCCCCCCccccHHHHHHHhhcccCcccCCCCCeEe-ecCCCchhHH
Q psy17006 222 QSGHLVCSNCRPKL--SCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVV-LLHTEKPEHE 284 (446)
Q Consensus 222 ~~gh~~C~~C~~~~--~~Cp~Cr~~~~~~r~~~~e~~c~~~~~~C~~~~~GC~~~-~~~~~l~~He 284 (446)
++-|++|-+|...- ..||.|..++.. +|.....-.+-|. ...||.-+ +...+|+.|.
T Consensus 108 PCkHvFCl~CAr~~~dK~Cp~C~d~Vqr-----Ieq~~~g~iFmC~-~~~GC~RTyLsqrDlqAHI 167 (389)
T KOG2932|consen 108 PCKHVFCLECARSDSDKICPLCDDRVQR-----IEQIMMGGIFMCA-APHGCLRTYLSQRDLQAHI 167 (389)
T ss_pred ccchhhhhhhhhcCccccCcCcccHHHH-----HHHhcccceEEee-cchhHHHHHhhHHHHHHHh
Confidence 67799999998764 489999888774 5555555566676 45677643 3344555554
No 143
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=33.97 E-value=11 Score=29.29 Aligned_cols=43 Identities=23% Similarity=0.508 Sum_probs=17.1
Q ss_pred ceecccccCcCc-----Ccccccc-ccceeccCcccC-----CCCCCCCCCCCc
Q psy17006 36 LFECPVCFDYVL-----PPIIQCQ-SGHLVCSNCRPK-----LSCCSTCRGPLG 78 (446)
Q Consensus 36 ~l~C~iC~~~l~-----~Pv~qC~-~GH~~C~~C~~~-----~~~CP~Cr~~~~ 78 (446)
--.|.||.+-+- ++...|. |+-.+|+.|.+- ...||.|+.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 356999998773 3544663 688999999863 368999998765
No 144
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=31.78 E-value=8.9 Score=38.13 Aligned_cols=32 Identities=25% Similarity=0.703 Sum_probs=27.6
Q ss_pred ccceeeeccCcccccCcccCC-----CCCCCCCCCCC
Q psy17006 215 AEHFTYCQSGHLVCSNCRPKL-----SCCSTCRGPLG 246 (446)
Q Consensus 215 ~~~~~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~ 246 (446)
.++++-|++|-.+|..|+..+ +.||.||....
T Consensus 28 dknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 28 DKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 467899999999999999874 58999998765
No 145
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=31.46 E-value=40 Score=18.75 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=12.4
Q ss_pred cccc-cChhHHHHHhhhcc
Q psy17006 301 CKWS-GALDQVMGHLNQSH 318 (446)
Q Consensus 301 C~~~-g~~~~l~~H~~~~H 318 (446)
|+.. ....+|..|+...|
T Consensus 6 C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 6 CGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp TS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCcHHHHHHHHHhhC
Confidence 6666 45678888988765
No 146
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=30.81 E-value=30 Score=25.07 Aligned_cols=30 Identities=23% Similarity=0.664 Sum_probs=20.9
Q ss_pred ecc--cccCcCcC------ccccc-cccceeccCcccCC
Q psy17006 38 ECP--VCFDYVLP------PIIQC-QSGHLVCSNCRPKL 67 (446)
Q Consensus 38 ~C~--iC~~~l~~------Pv~qC-~~GH~~C~~C~~~~ 67 (446)
-|| -|..++.. +..+| .||+.||-.|....
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 477 77665532 23578 68999999998654
No 147
>PRK04023 DNA polymerase II large subunit; Validated
Probab=30.16 E-value=52 Score=37.84 Aligned_cols=42 Identities=21% Similarity=0.530 Sum_probs=32.0
Q ss_pred CceecccccCcCcCcccccc-ccc-----eeccCcccCC--CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLPPIIQCQ-SGH-----LVCSNCRPKL--SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~-~GH-----~~C~~C~~~~--~~CP~Cr~~~~ 78 (446)
....||-|.... +...|. ||. .+|..|.... ..||.|.....
T Consensus 625 g~RfCpsCG~~t--~~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 625 GRRKCPSCGKET--FYRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPT 674 (1121)
T ss_pred cCccCCCCCCcC--CcccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCC
Confidence 445799999986 334786 774 6999998875 47999998764
No 148
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=29.39 E-value=28 Score=24.85 Aligned_cols=29 Identities=24% Similarity=0.599 Sum_probs=20.3
Q ss_pred ecccccCcCcC--cccccc-ccceeccCcccC
Q psy17006 38 ECPVCFDYVLP--PIIQCQ-SGHLVCSNCRPK 66 (446)
Q Consensus 38 ~C~iC~~~l~~--Pv~qC~-~GH~~C~~C~~~ 66 (446)
.|++|...+.- .-..|. ||+++|..|...
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~ 35 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSN 35 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCC
Confidence 57888765532 224674 699999999875
No 149
>KOG1785|consensus
Probab=29.39 E-value=14 Score=37.60 Aligned_cols=35 Identities=23% Similarity=0.616 Sum_probs=27.6
Q ss_pred cccccceeeeccCcccccCcccCC------CCCCCCCCCCC
Q psy17006 212 RKQAEHFTYCQSGHLVCSNCRPKL------SCCSTCRGPLG 246 (446)
Q Consensus 212 ~~~~~~~~~C~~gh~~C~~C~~~~------~~Cp~Cr~~~~ 246 (446)
....+.+.+=|+||+.|..|...- ..||+||-++.
T Consensus 376 aendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 376 AENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred hccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 444567788899999999998752 37999998875
No 150
>KOG4265|consensus
Probab=29.08 E-value=17 Score=36.52 Aligned_cols=26 Identities=38% Similarity=0.965 Sum_probs=21.2
Q ss_pred ccCcc-cccCcccCC----CCCCCCCCCCCc
Q psy17006 222 QSGHL-VCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 222 ~~gh~-~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
|+.|+ .|++|.+.+ ++||.||.++..
T Consensus 307 PCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 307 PCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 66776 899998864 589999999875
No 151
>COG1773 Rubredoxin [Energy production and conversion]
Probab=28.42 E-value=53 Score=23.97 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=20.5
Q ss_pred ccccCCCCCCCCCCCCccCCCCceecccccC
Q psy17006 14 GSRRHEPTHPSMCPGTSTDLASLFECPVCFD 44 (446)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~~l~C~iC~~ 44 (446)
+.+.+.|+...-+.+.-++|.+...||.|.-
T Consensus 14 d~e~Gdp~~gi~pgT~fedlPd~w~CP~Cg~ 44 (55)
T COG1773 14 DPEKGDPRCGIAPGTPFEDLPDDWVCPECGV 44 (55)
T ss_pred ccccCCccCCCCCCCchhhCCCccCCCCCCC
Confidence 4445555555544444588888899999874
No 152
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=28.20 E-value=30 Score=29.95 Aligned_cols=24 Identities=25% Similarity=0.675 Sum_probs=19.2
Q ss_pred eecccccCcCcCccccccccceeccCccc
Q psy17006 37 FECPVCFDYVLPPIIQCQSGHLVCSNCRP 65 (446)
Q Consensus 37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~ 65 (446)
..||.|+.+|.. ..|-+||..|-.
T Consensus 29 ~hCp~Cg~PLF~-----KdG~v~CPvC~~ 52 (131)
T COG1645 29 KHCPKCGTPLFR-----KDGEVFCPVCGY 52 (131)
T ss_pred hhCcccCCccee-----eCCeEECCCCCc
Confidence 579999998866 349999988873
No 153
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=28.17 E-value=28 Score=28.27 Aligned_cols=23 Identities=30% Similarity=0.946 Sum_probs=18.8
Q ss_pred cccccCcccCC--------CCCCCCCCCCCc
Q psy17006 225 HLVCSNCRPKL--------SCCSTCRGPLGN 247 (446)
Q Consensus 225 h~~C~~C~~~~--------~~Cp~Cr~~~~~ 247 (446)
.++|+-|++.+ ..||.|+.++..
T Consensus 62 ~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp 92 (105)
T COG4357 62 AIICGVCRKLLTRAEYGMCGSCPYCQSPFNP 92 (105)
T ss_pred cEEhhhhhhhhhHHHHhhcCCCCCcCCCCCc
Confidence 37899998864 479999999886
No 154
>KOG1734|consensus
Probab=27.96 E-value=15 Score=35.60 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=32.0
Q ss_pred CceecccccCcCcCc---------cccccccceeccCcccCC------CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLPP---------IIQCQSGHLVCSNCRPKL------SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~P---------v~qC~~GH~~C~~C~~~~------~~CP~Cr~~~~ 78 (446)
++-.|.+|..-+..- .++=.|+|.|=..|+.-+ ..||.|++.+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 445699998776432 244456999988888753 68999999775
No 155
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=27.79 E-value=31 Score=23.52 Aligned_cols=23 Identities=26% Similarity=0.764 Sum_probs=16.0
Q ss_pred eecccccCcCcCccccccccceeccCc
Q psy17006 37 FECPVCFDYVLPPIIQCQSGHLVCSNC 63 (446)
Q Consensus 37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C 63 (446)
-.||.|..+|... ..|..+|..|
T Consensus 18 ~~Cp~C~~PL~~~----k~g~~~Cv~C 40 (41)
T PF06677_consen 18 EHCPDCGTPLMRD----KDGKIYCVSC 40 (41)
T ss_pred CccCCCCCeeEEe----cCCCEECCCC
Confidence 3689997666543 3488888877
No 156
>PF15616 TerY-C: TerY-C metal binding domain
Probab=26.85 E-value=40 Score=29.19 Aligned_cols=46 Identities=22% Similarity=0.442 Sum_probs=32.9
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCCCCCCCCCCCCc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPLG 78 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~CP~Cr~~~~ 78 (446)
.++|...--||-|....--. .|.||+++|-.= +....||.|.....
T Consensus 71 tseL~g~PgCP~CGn~~~fa--~C~CGkl~Ci~g-~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 71 TSELIGAPGCPHCGNQYAFA--VCGCGKLFCIDG-EGEVTCPWCGNEGS 116 (131)
T ss_pred hHHhcCCCCCCCCcChhcEE--EecCCCEEEeCC-CCCEECCCCCCeee
Confidence 45666667899999876655 488899996332 23468999988653
No 157
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.48 E-value=31 Score=26.47 Aligned_cols=27 Identities=30% Similarity=0.767 Sum_probs=22.7
Q ss_pred cccccceeccCcccC-C-CCCCCCCCCCc
Q psy17006 52 QCQSGHLVCSNCRPK-L-SCCSTCRGPLG 78 (446)
Q Consensus 52 qC~~GH~~C~~C~~~-~-~~CP~Cr~~~~ 78 (446)
.|...++||..|.+. + ..||.|...+.
T Consensus 24 ICtfEcTFCadCae~~l~g~CPnCGGelv 52 (84)
T COG3813 24 ICTFECTFCADCAENRLHGLCPNCGGELV 52 (84)
T ss_pred EEEEeeehhHhHHHHhhcCcCCCCCchhh
Confidence 687789999999985 3 69999998765
No 158
>PRK00420 hypothetical protein; Validated
Probab=26.20 E-value=37 Score=28.58 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=18.6
Q ss_pred eecccccCcCcCccccccccceeccCcccC
Q psy17006 37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPK 66 (446)
Q Consensus 37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 66 (446)
-.||.|..+|..- ..|..+|..|-..
T Consensus 24 ~~CP~Cg~pLf~l----k~g~~~Cp~Cg~~ 49 (112)
T PRK00420 24 KHCPVCGLPLFEL----KDGEVVCPVHGKV 49 (112)
T ss_pred CCCCCCCCcceec----CCCceECCCCCCe
Confidence 5799999777653 2378888777653
No 159
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=25.91 E-value=43 Score=28.11 Aligned_cols=26 Identities=31% Similarity=0.778 Sum_probs=19.1
Q ss_pred ccccCcccC------CCCCCCCCCCCCccccH
Q psy17006 226 LVCSNCRPK------LSCCSTCRGPLGNIRNL 251 (446)
Q Consensus 226 ~~C~~C~~~------~~~Cp~Cr~~~~~~r~~ 251 (446)
+.|++|.+. ...|++|++++.--+++
T Consensus 70 V~CP~C~K~TKmLGr~D~CM~C~~pLTLd~~l 101 (114)
T PF11023_consen 70 VECPNCGKQTKMLGRVDACMHCKEPLTLDPSL 101 (114)
T ss_pred eECCCCCChHhhhchhhccCcCCCcCccCchh
Confidence 457888775 24899999998865553
No 160
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=25.86 E-value=92 Score=18.59 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=15.7
Q ss_pred HHHHHHhhcCC-CcceecCccEEE
Q psy17006 141 QVMGHLNQSHK-TITTLQGEDIVF 163 (446)
Q Consensus 141 ~l~~H~~~~h~-~~~~c~~c~~~f 163 (446)
+|..|++.... ..-.|+.|+..|
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F 24 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSF 24 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEE
T ss_pred CHHHHhhhcCCCCCCCCCCCcCee
Confidence 46778875332 567888888765
No 161
>KOG4362|consensus
Probab=25.76 E-value=17 Score=39.78 Aligned_cols=45 Identities=27% Similarity=0.721 Sum_probs=35.8
Q ss_pred CCCceecccccCcCcCccccccccceeccCcccCC-------CCCCCCCCCCc
Q psy17006 33 LASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCSTCRGPLG 78 (446)
Q Consensus 33 l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~ 78 (446)
+...++||||......|+ .-.|-|.||..|+... ..||+|+..+.
T Consensus 18 ~~k~lEc~ic~~~~~~p~-~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPS-LLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred HhhhccCCceeEEeeccc-hhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 446789999999999996 3345999999999864 37999996543
No 162
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=25.04 E-value=29 Score=35.19 Aligned_cols=48 Identities=29% Similarity=0.671 Sum_probs=32.5
Q ss_pred CccCCC-CceecccccCcC-cCc------------cccccccceeccCcccCC----CCCCCCCCCC
Q psy17006 29 TSTDLA-SLFECPVCFDYV-LPP------------IIQCQSGHLVCSNCRPKL----SCCSTCRGPL 77 (446)
Q Consensus 29 ~~~~l~-~~l~C~iC~~~l-~~P------------v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~ 77 (446)
..+++. +.-.|.||.+-+ .+| . .=+|||.+=-+|++.+ ..||+||.|+
T Consensus 279 t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pK-rLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 279 TEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPK-RLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred hhhhhcCCCCeEEEecccccCCCCccCcccccCCcc-cccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 344443 456799998875 333 2 1235988888887653 6899999985
No 163
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=24.50 E-value=50 Score=21.61 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=16.5
Q ss_pred CceecccccCcCcCccccccccceeccCccc
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRP 65 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~ 65 (446)
+...|--|.+.+.+..+.-.-++.+|-.|+.
T Consensus 2 ~~~~C~eC~~~f~dSyL~~~F~~~VCD~CRD 32 (34)
T PF01286_consen 2 DYPKCDECGKPFMDSYLLNNFDLPVCDKCRD 32 (34)
T ss_dssp S-EE-TTT--EES-SSCCCCTS-S--TTT-S
T ss_pred CCchHhHhCCHHHHHHHHHhCCccccccccC
Confidence 3467888999998887555568889988875
No 164
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG2272|consensus
Probab=24.42 E-value=53 Score=31.51 Aligned_cols=44 Identities=27% Similarity=0.686 Sum_probs=32.6
Q ss_pred CCceecccccCcCcCccccccccceeccCcccCC--CCCCCCCCCCc
Q psy17006 34 ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCSTCRGPLG 78 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~CP~Cr~~~~ 78 (446)
...|.|.-|...|...- .--.|-++|..|..+. +.|-.||.||.
T Consensus 161 ~yHFkCt~C~keL~sda-Revk~eLyClrChD~mgipiCgaC~rpIe 206 (332)
T KOG2272|consen 161 PYHFKCTTCGKELTSDA-REVKGELYCLRCHDKMGIPICGACRRPIE 206 (332)
T ss_pred ccceecccccccccchh-hhhccceeccccccccCCcccccccCchH
Confidence 46788888888886653 2335889999998875 56777888886
No 166
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=24.31 E-value=54 Score=21.08 Aligned_cols=9 Identities=33% Similarity=0.445 Sum_probs=4.4
Q ss_pred ecccccCcC
Q psy17006 38 ECPVCFDYV 46 (446)
Q Consensus 38 ~C~iC~~~l 46 (446)
.|.-|....
T Consensus 2 ~C~~Cg~~~ 10 (32)
T PF03604_consen 2 ICGECGAEV 10 (32)
T ss_dssp BESSSSSSE
T ss_pred CCCcCCCee
Confidence 455555444
No 167
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=23.90 E-value=57 Score=25.20 Aligned_cols=45 Identities=11% Similarity=0.316 Sum_probs=30.3
Q ss_pred CCCCCCCCCccccchHHHHHhhhccccccccCCCCeeeecCCChhhH
Q psy17006 69 CCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEH 115 (446)
Q Consensus 69 ~CP~Cr~~~~~~~~~~~e~~~~~l~v~C~~~~~GC~~~~~~~~~~~H 115 (446)
.||.|+........+.+...+.++.-.|.|- .|+.+++..+-..|
T Consensus 3 ~CP~Cg~~a~irtSr~~s~~~~~~Y~qC~N~--eCg~tF~t~es~s~ 47 (72)
T PRK09678 3 HCPLCQHAAHARTSRYITDTTKERYHQCQNV--NCSATFITYESVQR 47 (72)
T ss_pred cCCCCCCccEEEEChhcChhhheeeeecCCC--CCCCEEEEEEEEEE
Confidence 6999998764344556666678888889885 47666665444444
No 168
>KOG1100|consensus
Probab=23.87 E-value=45 Score=31.26 Aligned_cols=23 Identities=39% Similarity=0.996 Sum_probs=0.0
Q ss_pred ccCcc-cccCcccCCCCCCCCCCC
Q psy17006 222 QSGHL-VCSNCRPKLSCCSTCRGP 244 (446)
Q Consensus 222 ~~gh~-~C~~C~~~~~~Cp~Cr~~ 244 (446)
|+.|+ .|..|...+..||.|+.+
T Consensus 175 PCrHl~lC~~C~~~~~~CPiC~~~ 198 (207)
T KOG1100|consen 175 PCRHLCLCGICDESLRICPICRSP 198 (207)
T ss_pred cccceEecccccccCccCCCCcCh
No 169
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=23.77 E-value=82 Score=37.22 Aligned_cols=41 Identities=27% Similarity=0.666 Sum_probs=30.7
Q ss_pred ceecccccCcCcCcccccc-ccce-----eccCcccCC-------CCCCCCCCCCc
Q psy17006 36 LFECPVCFDYVLPPIIQCQ-SGHL-----VCSNCRPKL-------SCCSTCRGPLG 78 (446)
Q Consensus 36 ~l~C~iC~~~l~~Pv~qC~-~GH~-----~C~~C~~~~-------~~CP~Cr~~~~ 78 (446)
.+.||-|....... .|. ||.. .|..|-.+. ..||.|..++.
T Consensus 667 ~rkCPkCG~~t~~~--fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv 720 (1337)
T PRK14714 667 RRRCPSCGTETYEN--RCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELT 720 (1337)
T ss_pred EEECCCCCCccccc--cCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccc
Confidence 48899999976443 576 7854 499998764 27999998765
No 170
>PHA00616 hypothetical protein
Probab=23.66 E-value=52 Score=22.85 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=22.7
Q ss_pred cccCCCCCCCCcccc-ChhHHHHHHhhcCC-CcceecC
Q psy17006 123 PYHCPCPGASCKWSG-ALDQVMGHLNQSHK-TITTLQG 158 (446)
Q Consensus 123 ~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~-~~~~c~~ 158 (446)
|+.|| .|+... ..++|..|+...|. ...+|++
T Consensus 1 pYqC~----~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCL----RCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCccc----hhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 45687 588775 56899999999886 3444443
No 171
>KOG2817|consensus
Probab=23.59 E-value=25 Score=35.95 Aligned_cols=42 Identities=29% Similarity=0.597 Sum_probs=28.9
Q ss_pred CCCceecccccCcCc---CccccccccceeccCcccCC-------CCCCCCCC
Q psy17006 33 LASLFECPVCFDYVL---PPIIQCQSGHLVCSNCRPKL-------SCCSTCRG 75 (446)
Q Consensus 33 l~~~l~C~iC~~~l~---~Pv~qC~~GH~~C~~C~~~~-------~~CP~Cr~ 75 (446)
.-+.|.|||=.+--. +|+ .=.|||++++.-+.++ .+||.|..
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm-~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPM-MLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ccceeecccchhhccCCCCCe-eeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 457889998766553 576 3334999998888764 25777754
No 172
>KOG2807|consensus
Probab=23.46 E-value=58 Score=32.51 Aligned_cols=37 Identities=22% Similarity=0.685 Sum_probs=26.2
Q ss_pred ccccc-CcCcCcccccc-ccceeccCccc----CCCCCCCCCC
Q psy17006 39 CPVCF-DYVLPPIIQCQ-SGHLVCSNCRP----KLSCCSTCRG 75 (446)
Q Consensus 39 C~iC~-~~l~~Pv~qC~-~GH~~C~~C~~----~~~~CP~Cr~ 75 (446)
|-.|. +.+..+.|+|. |-+.||..|-. .+..||.|..
T Consensus 333 Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 333 CFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred eeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 88884 44455678885 67899999953 3468888863
No 173
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=23.22 E-value=57 Score=26.84 Aligned_cols=35 Identities=29% Similarity=0.627 Sum_probs=22.4
Q ss_pred cCCCCceecccccCcCc-CccccccccceeccCcccC
Q psy17006 31 TDLASLFECPVCFDYVL-PPIIQCQSGHLVCSNCRPK 66 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~-~Pv~qC~~GH~~C~~C~~~ 66 (446)
..+...+.||.|..... -|+-. .-+|+.|..|-..
T Consensus 16 ~klpt~f~CP~Cge~~v~v~~~k-~~~h~~C~~CG~y 51 (99)
T PRK14892 16 PKLPKIFECPRCGKVSISVKIKK-NIAIITCGNCGLY 51 (99)
T ss_pred cCCCcEeECCCCCCeEeeeecCC-CcceEECCCCCCc
Confidence 45668899999995332 23322 2378888887653
No 174
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=22.06 E-value=43 Score=24.48 Aligned_cols=41 Identities=24% Similarity=0.678 Sum_probs=29.8
Q ss_pred ecccccCcCcCc---cccccccceeccCcccCC--CCCCCCCCCCc
Q psy17006 38 ECPVCFDYVLPP---IIQCQSGHLVCSNCRPKL--SCCSTCRGPLG 78 (446)
Q Consensus 38 ~C~iC~~~l~~P---v~qC~~GH~~C~~C~~~~--~~CP~Cr~~~~ 78 (446)
.|-.|..-|.+. -+.|+---+||..|.+.. ..||.|...+.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCcCCCCccc
Confidence 466676666431 246776779999999886 68999998764
No 175
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.84 E-value=23 Score=34.17 Aligned_cols=27 Identities=30% Similarity=0.670 Sum_probs=21.0
Q ss_pred eccCcccccCcccC------CCCCCCCCCCCCc
Q psy17006 221 CQSGHLVCSNCRPK------LSCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~~C~~C~~~------~~~Cp~Cr~~~~~ 247 (446)
-++||++|-.|... ...||.||.....
T Consensus 231 t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 231 TPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 37899999999765 2469999986543
No 176
>KOG1571|consensus
Probab=21.30 E-value=23 Score=35.71 Aligned_cols=27 Identities=30% Similarity=0.773 Sum_probs=20.6
Q ss_pred eccCcccc-cCcccCCCCCCCCCCCCCc
Q psy17006 221 CQSGHLVC-SNCRPKLSCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~~C-~~C~~~~~~Cp~Cr~~~~~ 247 (446)
=|+||+-| ..|...+.+||.||+.+..
T Consensus 321 vpcGh~ccct~cs~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 321 VPCGHVCCCTLCSKHLPQCPVCRQRIRL 348 (355)
T ss_pred ecCCcEEEchHHHhhCCCCchhHHHHHH
Confidence 37899855 4577778899999987653
No 177
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.18 E-value=84 Score=20.33 Aligned_cols=9 Identities=33% Similarity=1.010 Sum_probs=6.1
Q ss_pred CCCCCCCCC
Q psy17006 68 SCCSTCRGP 76 (446)
Q Consensus 68 ~~CP~Cr~~ 76 (446)
..||+|..+
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 467777764
No 178
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=21.10 E-value=29 Score=24.91 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCcccc--HHHH
Q psy17006 236 SCCSTCRGPLGNIRN--LAME 254 (446)
Q Consensus 236 ~~Cp~Cr~~~~~~r~--~~~e 254 (446)
..||.|...+...|| +|+|
T Consensus 25 atCP~C~a~~~~srnLrRHle 45 (54)
T PF09237_consen 25 ATCPICGAVIRQSRNLRRHLE 45 (54)
T ss_dssp EE-TTT--EESSHHHHHHHHH
T ss_pred CCCCcchhhccchhhHHHHHH
Confidence 379999999998887 5555
No 179
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=20.33 E-value=29 Score=22.01 Aligned_cols=19 Identities=26% Similarity=0.791 Sum_probs=9.1
Q ss_pred ceeccCcccCC--------CCCCCCCC
Q psy17006 57 HLVCSNCRPKL--------SCCSTCRG 75 (446)
Q Consensus 57 H~~C~~C~~~~--------~~CP~Cr~ 75 (446)
|.||+.|-... ..||.|..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 66777776542 25666653
No 180
>PLN02189 cellulose synthase
Probab=20.22 E-value=55 Score=37.85 Aligned_cols=42 Identities=24% Similarity=0.596 Sum_probs=32.9
Q ss_pred eecccccCcCc-----Ccccccc-ccceeccCcccC-----CCCCCCCCCCCc
Q psy17006 37 FECPVCFDYVL-----PPIIQCQ-SGHLVCSNCRPK-----LSCCSTCRGPLG 78 (446)
Q Consensus 37 l~C~iC~~~l~-----~Pv~qC~-~GH~~C~~C~~~-----~~~CP~Cr~~~~ 78 (446)
-.|.||.+-+- +|..-|. ||-.+|..|.+- ...||.|+++..
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 38999999874 3555775 899999999864 258999998764
No 181
>PLN02436 cellulose synthase A
Probab=20.15 E-value=56 Score=37.87 Aligned_cols=42 Identities=24% Similarity=0.661 Sum_probs=32.9
Q ss_pred eecccccCcCc-----Ccccccc-ccceeccCcccC-----CCCCCCCCCCCc
Q psy17006 37 FECPVCFDYVL-----PPIIQCQ-SGHLVCSNCRPK-----LSCCSTCRGPLG 78 (446)
Q Consensus 37 l~C~iC~~~l~-----~Pv~qC~-~GH~~C~~C~~~-----~~~CP~Cr~~~~ 78 (446)
-.|.||.+-+- +|..-|. ||-.+|..|.+- ...||.|+++..
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 38999999873 3655785 899999999864 258999998764
No 182
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.00 E-value=56 Score=37.91 Aligned_cols=41 Identities=27% Similarity=0.665 Sum_probs=32.0
Q ss_pred ecccccCcCc-----Cccccc-cccceeccCcccC-----CCCCCCCCCCCc
Q psy17006 38 ECPVCFDYVL-----PPIIQC-QSGHLVCSNCRPK-----LSCCSTCRGPLG 78 (446)
Q Consensus 38 ~C~iC~~~l~-----~Pv~qC-~~GH~~C~~C~~~-----~~~CP~Cr~~~~ 78 (446)
.|.||.+-+- +|..-| .||-.+|..|.+- ...||.|+++..
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 7999999873 365567 4799999999863 358999998764
Done!