Query psy17006
Match_columns 446
No_of_seqs 350 out of 1347
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 19:21:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a25_A Ubiquitin ligase SIAH1; 100.0 2.8E-43 9.6E-48 324.7 15.8 190 257-446 2-192 (193)
2 3hcs_A TNF receptor-associated 99.9 4.9E-23 1.7E-27 186.1 6.5 132 30-168 12-152 (170)
3 2a25_A Ubiquitin ligase SIAH1; 99.9 9.3E-23 3.2E-27 187.6 4.3 131 88-218 1-132 (193)
4 3hct_A TNF receptor-associated 99.6 4.8E-16 1.6E-20 131.7 4.0 92 30-124 12-111 (118)
5 3knv_A TNF receptor-associated 99.6 1.1E-16 3.7E-21 139.9 -2.1 89 30-121 25-131 (141)
6 1rmd_A RAG1; V(D)J recombinati 99.5 8.7E-16 3E-20 129.6 0.5 90 30-122 17-115 (116)
7 3hcs_A TNF receptor-associated 99.2 2.2E-12 7.4E-17 116.0 3.0 97 218-320 31-135 (170)
8 3ztg_A E3 ubiquitin-protein li 98.8 1.1E-09 3.8E-14 87.8 3.0 69 29-98 6-85 (92)
9 1t1h_A Gspef-atpub14, armadill 98.8 6.1E-10 2.1E-14 86.6 1.4 63 30-93 2-72 (78)
10 1wgm_A Ubiquitin conjugation f 98.8 4.2E-09 1.5E-13 85.7 4.3 66 29-95 15-88 (98)
11 2kr4_A Ubiquitin conjugation f 98.7 5.3E-09 1.8E-13 82.8 3.4 63 30-93 8-77 (85)
12 2egp_A Tripartite motif-contai 98.7 3.5E-09 1.2E-13 82.3 0.9 49 29-78 5-64 (79)
13 2kre_A Ubiquitin conjugation f 98.7 1.4E-08 4.7E-13 83.0 4.4 63 30-93 23-92 (100)
14 2ecv_A Tripartite motif-contai 98.7 6.3E-09 2.1E-13 81.7 2.2 50 28-78 11-70 (85)
15 2ecw_A Tripartite motif-contai 98.7 3.8E-09 1.3E-13 83.0 0.9 59 28-87 11-82 (85)
16 2yuc_A TNF receptor-associated 98.7 2E-09 6.9E-14 83.3 -0.9 36 110-148 3-38 (76)
17 2y43_A E3 ubiquitin-protein li 98.6 2.6E-09 8.7E-14 87.0 -1.1 64 30-93 16-86 (99)
18 2csy_A Zinc finger protein 183 98.6 2.1E-08 7.2E-13 78.4 3.5 60 30-90 9-74 (81)
19 2djb_A Polycomb group ring fin 98.6 2E-08 6.7E-13 76.8 3.1 49 30-78 9-61 (72)
20 1jm7_B BARD1, BRCA1-associated 98.6 1.2E-08 4.1E-13 85.7 1.9 63 30-92 16-83 (117)
21 2ysl_A Tripartite motif-contai 98.6 3.2E-08 1.1E-12 75.5 3.8 48 30-78 14-68 (73)
22 2yur_A Retinoblastoma-binding 98.6 2.8E-08 9.7E-13 76.3 3.4 48 30-78 9-63 (74)
23 2ecy_A TNF receptor-associated 98.6 2.6E-08 8.9E-13 74.7 2.8 48 30-78 9-61 (66)
24 3fl2_A E3 ubiquitin-protein li 98.5 1.3E-08 4.5E-13 86.3 -0.6 61 31-92 47-116 (124)
25 2ckl_A Polycomb group ring fin 98.5 2E-08 6.9E-13 83.0 0.5 63 30-92 9-82 (108)
26 1e4u_A Transcriptional repress 98.5 4.2E-08 1.5E-12 76.3 1.8 50 29-78 4-61 (78)
27 3lrq_A E3 ubiquitin-protein li 98.4 1.3E-08 4.4E-13 83.1 -1.4 67 29-95 15-92 (100)
28 2d8t_A Dactylidin, ring finger 98.4 8E-08 2.7E-12 73.1 2.9 47 31-78 10-60 (71)
29 1z6u_A NP95-like ring finger p 98.4 2.2E-08 7.5E-13 88.0 -0.4 60 33-93 75-143 (150)
30 3l11_A E3 ubiquitin-protein li 98.4 8.9E-08 3E-12 80.0 3.1 62 30-92 9-85 (115)
31 2ckl_B Ubiquitin ligase protei 98.4 4.7E-08 1.6E-12 87.1 1.3 65 30-94 48-121 (165)
32 4ayc_A E3 ubiquitin-protein li 98.4 3E-08 1E-12 85.8 -0.1 58 32-90 49-111 (138)
33 1bor_A Transcription factor PM 98.4 1.9E-07 6.5E-12 67.7 4.2 44 34-78 4-48 (56)
34 2ct2_A Tripartite motif protei 98.3 1.6E-07 5.6E-12 74.2 2.9 49 29-78 8-67 (88)
35 2yu4_A E3 SUMO-protein ligase 98.3 1.3E-07 4.3E-12 76.3 2.1 62 32-93 3-80 (94)
36 2ea6_A Ring finger protein 4; 98.3 1.1E-07 3.8E-12 71.5 1.4 48 30-78 9-67 (69)
37 2ysj_A Tripartite motif-contai 98.3 2.5E-07 8.6E-12 68.5 3.2 43 30-73 14-63 (63)
38 3hct_A TNF receptor-associated 98.3 1.5E-07 5.1E-12 79.1 2.0 71 219-291 32-110 (118)
39 2c2l_A CHIP, carboxy terminus 98.3 3E-07 1E-11 88.3 4.2 62 31-93 203-272 (281)
40 2ecg_A Baculoviral IAP repeat- 98.3 3.9E-08 1.3E-12 75.8 -1.7 49 30-79 19-68 (75)
41 2ecj_A Tripartite motif-contai 98.3 2.5E-07 8.6E-12 67.1 2.5 43 30-73 9-58 (58)
42 1jm7_A BRCA1, breast cancer ty 98.2 5.7E-08 1.9E-12 80.6 -2.1 47 31-78 16-69 (112)
43 2f42_A STIP1 homology and U-bo 98.2 4.3E-07 1.5E-11 81.7 2.5 63 30-93 100-170 (179)
44 1rmd_A RAG1; V(D)J recombinati 98.2 3.3E-07 1.1E-11 76.6 1.6 70 219-290 37-115 (116)
45 2ect_A Ring finger protein 126 98.2 1E-06 3.5E-11 68.0 4.3 50 29-78 8-63 (78)
46 3ng2_A RNF4, snurf, ring finge 98.2 2.1E-07 7.3E-12 70.4 -0.3 48 31-78 5-62 (71)
47 4ic3_A E3 ubiquitin-protein li 98.1 2.2E-07 7.4E-12 71.4 -1.1 49 30-79 18-67 (74)
48 1g25_A CDK-activating kinase a 98.1 3.2E-07 1.1E-11 68.4 -0.2 44 35-78 2-54 (65)
49 1x4j_A Ring finger protein 38; 98.1 1.1E-06 3.8E-11 67.4 2.6 48 31-78 18-71 (75)
50 1iym_A EL5; ring-H2 finger, ub 98.1 1.8E-06 6.1E-11 61.8 3.1 46 33-78 2-54 (55)
51 2yre_A F-box only protein 30; 98.1 1.6E-06 5.4E-11 69.5 3.0 54 261-317 37-90 (100)
52 2ep4_A Ring finger protein 24; 98.1 1.5E-06 5.2E-11 66.3 2.8 50 30-79 9-64 (74)
53 1chc_A Equine herpes virus-1 r 98.0 1.6E-06 5.5E-11 65.0 2.3 45 35-79 4-52 (68)
54 2xeu_A Ring finger protein 4; 98.0 5.7E-07 1.9E-11 66.4 -0.7 44 35-78 2-55 (64)
55 2ecn_A Ring finger protein 141 98.0 9.3E-07 3.2E-11 66.8 0.3 47 30-78 9-59 (70)
56 3knv_A TNF receptor-associated 98.0 2.2E-07 7.4E-12 80.7 -3.8 69 218-288 44-130 (141)
57 2yuc_A TNF receptor-associated 98.0 3.3E-06 1.1E-10 65.0 3.3 59 92-157 15-74 (76)
58 2yre_A F-box only protein 30; 97.9 1.4E-06 4.9E-11 69.8 0.6 58 237-295 39-98 (100)
59 2kiz_A E3 ubiquitin-protein li 97.9 3.3E-06 1.1E-10 63.5 1.7 49 31-79 9-63 (69)
60 3htk_C E3 SUMO-protein ligase 97.9 3.9E-06 1.3E-10 79.2 2.1 60 33-92 178-248 (267)
61 2ecm_A Ring finger and CHY zin 97.9 4.7E-06 1.6E-10 59.5 2.1 43 35-78 4-54 (55)
62 2ea5_A Cell growth regulator w 97.8 1.1E-05 3.9E-10 60.7 3.9 45 34-79 13-58 (68)
63 2yho_A E3 ubiquitin-protein li 97.8 2.5E-06 8.4E-11 66.4 -1.0 47 31-78 13-60 (79)
64 2l0b_A E3 ubiquitin-protein li 97.7 7.3E-06 2.5E-10 65.3 1.1 48 30-78 34-88 (91)
65 4ap4_A E3 ubiquitin ligase RNF 97.6 5.2E-06 1.8E-10 70.4 -0.7 44 34-78 5-59 (133)
66 3t6p_A Baculoviral IAP repeat- 97.5 2.1E-05 7.2E-10 78.0 1.2 47 32-79 291-338 (345)
67 2vje_B MDM4 protein; proto-onc 97.4 1.7E-05 5.6E-10 58.8 -0.7 45 35-79 6-56 (63)
68 1v87_A Deltex protein 2; ring- 97.4 2.8E-05 9.5E-10 64.4 0.1 44 35-78 24-93 (114)
69 4ap4_A E3 ubiquitin ligase RNF 97.3 3E-05 1E-09 65.5 -0.7 45 34-78 70-124 (133)
70 2vje_A E3 ubiquitin-protein li 97.3 2.8E-05 9.6E-10 57.7 -0.8 45 35-79 7-57 (64)
71 2y1n_A E3 ubiquitin-protein li 97.2 8.1E-05 2.8E-09 74.5 1.9 46 33-79 329-379 (389)
72 2ecl_A Ring-box protein 2; RNF 97.2 0.00012 4.2E-09 56.8 2.5 44 35-78 14-75 (81)
73 1wim_A KIAA0161 protein; ring 97.1 5.3E-05 1.8E-09 60.6 -0.8 42 35-76 4-61 (94)
74 2bay_A PRE-mRNA splicing facto 97.0 0.00014 4.8E-09 53.4 0.5 42 36-78 3-49 (61)
75 2d9k_A FLN29 gene product; zin 96.4 0.00034 1.2E-08 53.3 -0.9 50 111-164 4-54 (75)
76 2d9k_A FLN29 gene product; zin 96.4 0.0009 3.1E-08 50.9 1.4 52 92-151 16-67 (75)
77 3dpl_R Ring-box protein 1; ubi 96.4 0.00079 2.7E-08 55.1 0.8 43 36-78 37-100 (106)
78 4a0k_B E3 ubiquitin-protein li 96.1 0.0009 3.1E-08 55.7 0.0 42 37-78 49-111 (117)
79 3vk6_A E3 ubiquitin-protein li 95.3 0.003 1E-07 50.4 0.0 79 38-152 3-87 (101)
80 2i13_A AART; DNA binding, zinc 93.2 0.058 2E-06 47.7 3.7 53 259-319 131-186 (190)
81 2gli_A Protein (five-finger GL 92.8 0.46 1.6E-05 40.0 8.7 74 241-318 75-154 (155)
82 2ea5_A Cell growth regulator w 92.7 0.032 1.1E-06 41.4 1.0 27 221-247 31-58 (68)
83 4ic3_A E3 ubiquitin-protein li 92.3 0.035 1.2E-06 41.8 0.8 26 222-247 41-67 (74)
84 2ct0_A Non-SMC element 1 homol 92.2 0.1 3.6E-06 39.4 3.4 44 34-78 13-63 (74)
85 2ecg_A Baculoviral IAP repeat- 92.1 0.027 9.2E-07 42.5 -0.1 26 222-247 42-68 (75)
86 1e4u_A Transcriptional repress 91.9 0.022 7.6E-07 43.6 -0.7 30 218-247 28-62 (78)
87 2yho_A E3 ubiquitin-protein li 91.6 0.047 1.6E-06 41.8 0.8 26 222-247 35-61 (79)
88 2d8s_A Cellular modulator of i 91.4 0.095 3.3E-06 40.2 2.4 44 35-78 14-69 (80)
89 1bor_A Transcription factor PM 91.1 0.12 4.2E-06 36.4 2.6 26 222-247 23-49 (56)
90 2y43_A E3 ubiquitin-protein li 90.6 0.048 1.6E-06 43.3 -0.0 39 222-260 40-85 (99)
91 3k1l_B Fancl; UBC, ring, RWD, 90.2 0.077 2.6E-06 51.9 1.1 45 34-78 306-372 (381)
92 1jm7_B BARD1, BRCA1-associated 90.0 0.18 6.1E-06 41.4 3.0 38 221-258 39-81 (117)
93 3ztg_A E3 ubiquitin-protein li 90.0 0.068 2.3E-06 41.7 0.4 45 221-265 29-84 (92)
94 2jun_A Midline-1; B-BOX, TRIM, 89.5 0.092 3.1E-06 41.8 0.8 32 35-66 2-35 (101)
95 3vk6_A E3 ubiquitin-protein li 89.1 0.072 2.5E-06 42.5 -0.1 64 222-321 19-88 (101)
96 3fl2_A E3 ubiquitin-protein li 88.6 0.17 6E-06 41.8 2.0 39 221-259 68-115 (124)
97 1tf6_A Protein (transcription 88.4 0.71 2.4E-05 40.4 6.0 47 270-319 141-189 (190)
98 1g25_A CDK-activating kinase a 88.3 0.07 2.4E-06 38.8 -0.6 27 221-247 24-55 (65)
99 2egp_A Tripartite motif-contai 88.2 0.14 4.8E-06 38.5 1.1 27 221-247 28-65 (79)
100 2vje_B MDM4 protein; proto-onc 87.6 0.042 1.4E-06 40.1 -2.2 26 222-247 26-56 (63)
101 2eod_A TNF receptor-associated 87.2 0.3 1E-05 35.0 2.3 42 118-164 5-48 (66)
102 2dlq_A GLI-kruppel family memb 86.9 0.85 2.9E-05 36.5 5.2 104 35-150 6-118 (124)
103 2ckl_A Polycomb group ring fin 86.5 0.15 5.1E-06 41.1 0.4 38 222-259 33-81 (108)
104 2ecm_A Ring finger and CHY zin 86.5 0.14 4.9E-06 35.5 0.2 25 222-246 26-54 (55)
105 4ayc_A E3 ubiquitin-protein li 86.4 0.13 4.6E-06 43.5 -0.0 28 220-247 68-99 (138)
106 1z6u_A NP95-like ring finger p 86.4 0.17 5.7E-06 43.7 0.5 40 221-260 94-142 (150)
107 3lrq_A E3 ubiquitin-protein li 85.9 0.12 4E-06 41.3 -0.6 27 221-247 39-70 (100)
108 2ea6_A Ring finger protein 4; 85.7 0.12 4.1E-06 37.6 -0.6 28 220-247 37-68 (69)
109 2ysl_A Tripartite motif-contai 85.7 0.12 4E-06 38.3 -0.7 26 222-247 37-69 (73)
110 1chc_A Equine herpes virus-1 r 85.6 0.17 5.9E-06 36.8 0.3 26 222-247 23-52 (68)
111 2ecv_A Tripartite motif-contai 85.6 0.24 8.1E-06 37.6 1.0 27 221-247 35-71 (85)
112 2ect_A Ring finger protein 126 85.5 0.23 7.9E-06 37.3 0.9 27 221-247 34-64 (78)
113 2djb_A Polycomb group ring fin 85.4 0.15 5.1E-06 37.9 -0.2 26 222-247 33-62 (72)
114 3ng2_A RNF4, snurf, ring finge 85.3 0.12 4.1E-06 38.0 -0.7 29 219-247 31-63 (71)
115 1iym_A EL5; ring-H2 finger, ub 85.1 0.25 8.6E-06 34.2 0.9 24 223-246 27-54 (55)
116 2yt9_A Zinc finger-containing 84.5 0.48 1.6E-05 36.2 2.4 76 237-320 9-91 (95)
117 1t1h_A Gspef-atpub14, armadill 84.5 0.13 4.4E-06 38.7 -1.0 38 221-258 24-69 (78)
118 2rpc_A Zinc finger protein ZIC 83.8 2.3 8E-05 35.6 6.7 113 32-150 21-146 (155)
119 2eod_A TNF receptor-associated 83.6 0.47 1.6E-05 33.9 1.9 51 93-150 10-61 (66)
120 2xeu_A Ring finger protein 4; 83.4 0.2 6.7E-06 35.8 -0.3 29 219-247 24-56 (64)
121 2d8t_A Dactylidin, ring finger 83.4 0.27 9.1E-06 36.3 0.4 28 220-247 30-61 (71)
122 1x4j_A Ring finger protein 38; 83.1 0.24 8.3E-06 36.9 0.1 28 220-247 41-72 (75)
123 2ecy_A TNF receptor-associated 82.8 0.34 1.2E-05 35.1 0.8 27 221-247 31-62 (66)
124 2ecw_A Tripartite motif-contai 82.7 0.24 8.3E-06 37.5 -0.0 28 220-247 34-71 (85)
125 2ct2_A Tripartite motif protei 82.7 0.17 6E-06 38.8 -0.9 27 221-247 35-68 (88)
126 2vje_A E3 ubiquitin-protein li 82.5 0.09 3.1E-06 38.4 -2.5 26 222-247 27-57 (64)
127 3t6p_A Baculoviral IAP repeat- 81.9 0.51 1.7E-05 46.4 1.9 27 221-247 311-338 (345)
128 2csy_A Zinc finger protein 183 81.2 0.2 6.7E-06 38.1 -1.1 26 221-246 31-60 (81)
129 3l11_A E3 ubiquitin-protein li 80.9 0.39 1.3E-05 39.0 0.6 26 222-247 32-62 (115)
130 2kiz_A E3 ubiquitin-protein li 80.8 0.22 7.5E-06 36.4 -0.9 28 220-247 32-63 (69)
131 2ckl_B Ubiquitin ligase protei 80.3 0.41 1.4E-05 41.6 0.5 41 221-261 71-120 (165)
132 2ep4_A Ring finger protein 24; 79.8 0.27 9.1E-06 36.5 -0.8 28 220-247 33-64 (74)
133 2dmd_A Zinc finger protein 64, 79.2 0.72 2.5E-05 35.2 1.6 77 236-320 9-90 (96)
134 1wfp_A Zinc finger (AN1-like) 78.8 3.2 0.00011 31.0 4.9 43 35-77 24-67 (74)
135 2yur_A Retinoblastoma-binding 77.8 0.47 1.6E-05 35.3 0.1 26 221-246 31-63 (74)
136 2dlq_A GLI-kruppel family memb 77.1 1.8 6.2E-05 34.5 3.6 77 236-320 36-120 (124)
137 1jm7_A BRCA1, breast cancer ty 76.6 0.49 1.7E-05 38.0 -0.1 27 221-247 37-70 (112)
138 2ee8_A Protein ODD-skipped-rel 76.2 2.3 7.8E-05 33.0 3.8 77 236-320 18-99 (106)
139 2l0b_A E3 ubiquitin-protein li 76.0 0.38 1.3E-05 37.5 -0.9 29 219-247 57-89 (91)
140 1wjp_A Zinc finger protein 295 74.5 1.9 6.4E-05 33.8 2.9 75 236-320 17-95 (107)
141 2kmk_A Zinc finger protein GFI 74.3 1.7 5.8E-05 31.8 2.4 73 237-317 3-80 (82)
142 2i13_A AART; DNA binding, zinc 71.6 2.6 8.8E-05 36.7 3.4 122 35-164 20-172 (190)
143 2j7j_A Transcription factor II 70.5 2.2 7.6E-05 31.3 2.3 75 239-318 7-85 (85)
144 2cup_A Skeletal muscle LIM-pro 70.3 1.9 6.4E-05 33.9 1.9 45 34-78 31-77 (101)
145 1v87_A Deltex protein 2; ring- 69.7 1.3 4.4E-05 35.7 0.8 28 220-247 58-94 (114)
146 1wjp_A Zinc finger protein 295 69.1 3.7 0.00013 31.9 3.5 26 122-151 68-94 (107)
147 2yt9_A Zinc finger-containing 68.9 3.5 0.00012 31.1 3.2 51 93-151 35-90 (95)
148 2jne_A Hypothetical protein YF 67.7 1.4 4.8E-05 34.7 0.6 37 37-78 33-72 (101)
149 2dlk_A Novel protein; ZF-C2H2 65.5 3.6 0.00012 29.9 2.5 66 93-162 7-77 (79)
150 1wg2_A Zinc finger (AN1-like) 65.0 7.3 0.00025 28.3 3.9 43 35-77 14-57 (64)
151 2y1n_A E3 ubiquitin-protein li 64.8 1.5 5.1E-05 43.7 0.3 30 218-247 345-379 (389)
152 2cs3_A Protein C14ORF4, MY039 64.7 4.6 0.00016 30.6 2.8 32 34-65 13-47 (93)
153 2kr4_A Ubiquitin conjugation f 64.5 1.5 5E-05 33.7 0.1 39 221-259 30-75 (85)
154 2ecl_A Ring-box protein 2; RNF 63.9 1.2 4.3E-05 33.7 -0.4 27 221-247 46-76 (81)
155 2wbs_A Krueppel-like factor 4; 63.4 7 0.00024 28.9 3.9 68 93-164 5-76 (89)
156 2rpc_A Zinc finger protein ZIC 63.1 5.6 0.00019 33.1 3.7 81 236-320 63-148 (155)
157 1wff_A Riken cDNA 2810002D23 p 62.9 12 0.00041 28.7 5.0 40 35-75 24-66 (85)
158 2csh_A Zinc finger protein 297 61.7 3.6 0.00012 32.1 2.0 76 237-321 12-92 (110)
159 2dmd_A Zinc finger protein 64, 61.6 8.8 0.0003 28.8 4.3 10 69-78 10-19 (96)
160 2gli_A Protein (five-finger GL 61.2 9.2 0.00032 31.6 4.7 12 37-48 4-15 (155)
161 2jp9_A Wilms tumor 1; DNA bind 61.0 10 0.00035 29.6 4.7 69 90-164 33-107 (119)
162 2c2l_A CHIP, carboxy terminus 60.9 2.7 9.3E-05 39.1 1.3 41 220-260 223-271 (281)
163 2kre_A Ubiquitin conjugation f 59.5 1.9 6.4E-05 34.3 -0.1 40 221-260 45-91 (100)
164 1wfh_A Zinc finger (AN1-like) 59.5 10 0.00035 27.5 3.9 42 35-76 14-56 (64)
165 2jmo_A Parkin; IBR, E3 ligase, 59.4 22 0.00074 26.7 6.0 40 36-76 25-76 (80)
166 1z60_A TFIIH basal transcripti 58.7 3.9 0.00013 29.3 1.5 37 38-74 17-59 (59)
167 1a1h_A QGSR zinc finger peptid 58.0 6.1 0.00021 29.3 2.7 75 237-319 6-87 (90)
168 2ct7_A Ring finger protein 31; 57.2 17 0.00057 27.7 5.1 33 35-67 23-61 (86)
169 2jrp_A Putative cytoplasmic pr 56.2 4.4 0.00015 30.9 1.5 38 37-79 3-43 (81)
170 1wgm_A Ubiquitin conjugation f 55.7 2.5 8.7E-05 33.3 0.1 40 221-260 38-85 (98)
171 1e8j_A Rubredoxin; iron-sulfur 54.6 10 0.00035 26.3 3.1 29 17-45 17-45 (52)
172 2drp_A Protein (tramtrack DNA- 54.2 6.2 0.00021 27.4 2.0 45 271-319 16-65 (66)
173 1llm_C Chimera of ZIF23-GCN4; 54.2 0.49 1.7E-05 35.9 -4.3 76 237-320 5-84 (88)
174 1z2q_A LM5-1; membrane protein 53.9 16 0.00056 27.7 4.5 32 35-66 20-54 (84)
175 2kmk_A Zinc finger protein GFI 53.5 8.3 0.00029 27.8 2.8 31 133-163 35-67 (82)
176 2ee8_A Protein ODD-skipped-rel 53.4 11 0.00037 29.0 3.5 74 68-149 18-96 (106)
177 2xqn_T Testin, TESS; metal-bin 52.4 3.6 0.00012 33.7 0.5 44 35-78 29-74 (126)
178 2dmi_A Teashirt homolog 3; zin 52.1 13 0.00043 29.1 3.8 78 236-321 20-107 (115)
179 1ubd_C Protein (YY1 zinc finge 51.1 11 0.00036 29.9 3.2 14 36-49 5-20 (124)
180 2ebt_A Krueppel-like factor 5; 50.8 12 0.00041 28.2 3.4 59 102-162 22-84 (100)
181 2ct1_A Transcriptional repress 50.5 9.8 0.00034 27.4 2.7 47 271-321 21-72 (77)
182 1wfl_A Zinc finger protein 216 50.3 22 0.00074 26.5 4.4 40 35-75 24-65 (74)
183 3m62_A Ubiquitin conjugation f 49.5 7.3 0.00025 43.1 2.5 62 31-93 886-955 (968)
184 4a0k_B E3 ubiquitin-protein li 49.3 3.5 0.00012 33.8 0.0 28 220-247 81-112 (117)
185 2lt7_A Transcriptional regulat 49.1 6.2 0.00021 32.6 1.5 52 92-151 49-103 (133)
186 2lt7_A Transcriptional regulat 49.1 6 0.0002 32.8 1.4 77 236-320 23-104 (133)
187 3nw0_A Non-structural maintena 48.6 5.6 0.00019 36.8 1.2 43 35-78 179-228 (238)
188 2ebt_A Krueppel-like factor 5; 48.2 14 0.00047 27.8 3.3 75 237-317 17-98 (100)
189 2jr6_A UPF0434 protein NMA0874 48.1 8.2 0.00028 28.4 1.8 33 30-65 2-34 (68)
190 2vy4_A U11/U12 small nuclear r 48.0 13 0.00044 23.8 2.5 26 122-150 4-29 (37)
191 2jny_A Uncharacterized BCR; st 47.6 8.1 0.00028 28.3 1.7 34 29-65 3-36 (67)
192 2cr8_A MDM4 protein; ZF-ranbp 47.4 13 0.00043 25.6 2.5 31 29-66 4-34 (53)
193 2dar_A PDZ and LIM domain prot 47.4 13 0.00045 28.2 3.1 38 36-78 25-62 (90)
194 2jp9_A Wilms tumor 1; DNA bind 47.3 10 0.00035 29.6 2.5 71 240-316 43-118 (119)
195 1ubd_C Protein (YY1 zinc finge 47.0 21 0.00071 28.1 4.4 67 92-164 4-75 (124)
196 1iml_A CRIP, cysteine rich int 46.9 8.3 0.00028 28.3 1.8 44 34-77 25-71 (76)
197 1flk_A TNF receptor associated 45.4 6.4 0.00022 35.9 1.1 26 261-286 9-39 (228)
198 3dpl_R Ring-box protein 1; ubi 45.1 3.5 0.00012 33.1 -0.7 29 219-247 69-101 (106)
199 2csh_A Zinc finger protein 297 44.4 21 0.00071 27.5 3.9 50 93-150 37-89 (110)
200 2v3b_B Rubredoxin 2, rubredoxi 44.4 12 0.0004 26.3 2.1 29 17-45 17-45 (55)
201 3uk3_C Zinc finger protein 217 43.5 9.5 0.00033 25.4 1.5 37 279-319 19-57 (57)
202 1weo_A Cellulose synthase, cat 43.2 9.9 0.00034 29.4 1.6 43 36-78 16-69 (93)
203 1vyx_A ORF K3, K3RING; zinc-bi 42.5 7.1 0.00024 27.8 0.7 44 35-78 5-58 (60)
204 4cpa_I Metallocarboxypeptidase 42.0 8 0.00027 24.3 0.8 29 40-70 6-34 (38)
205 2ko5_A Ring finger protein Z; 41.9 14 0.00047 28.9 2.3 47 30-78 22-72 (99)
206 1dx8_A Rubredoxin; electron tr 41.9 17 0.00059 26.8 2.8 29 17-45 21-49 (70)
207 2kn9_A Rubredoxin; metalloprot 41.6 15 0.00051 28.0 2.4 8 35-42 26-33 (81)
208 2dmi_A Teashirt homolog 3; zin 41.5 20 0.00069 27.8 3.4 26 122-151 79-105 (115)
209 2adr_A ADR1; transcription reg 41.1 30 0.001 23.1 4.0 44 103-150 8-54 (60)
210 1wfe_A Riken cDNA 2310008M20 p 41.1 35 0.0012 26.2 4.5 40 32-72 21-64 (86)
211 1tf6_A Protein (transcription 39.5 22 0.00075 30.5 3.7 11 308-318 88-98 (190)
212 1vfy_A Phosphatidylinositol-3- 39.5 18 0.00062 26.6 2.6 29 38-66 13-44 (73)
213 1yk4_A Rubredoxin, RD; electro 38.9 11 0.00038 26.1 1.2 25 20-44 19-43 (52)
214 1x68_A FHL5 protein; four-and- 38.8 23 0.00079 25.8 3.2 37 35-71 34-72 (76)
215 3vhs_A ATPase wrnip1; zinc fin 38.3 7.9 0.00027 22.5 0.3 24 92-119 5-28 (29)
216 2js4_A UPF0434 protein BB2007; 37.7 14 0.00048 27.3 1.7 33 30-65 2-34 (70)
217 1dvp_A HRS, hepatocyte growth 37.7 25 0.00087 31.7 3.9 36 31-66 156-194 (220)
218 4rxn_A Rubredoxin; electron tr 37.4 13 0.00044 26.0 1.4 18 28-45 28-45 (54)
219 1joc_A EEA1, early endosomal a 37.4 15 0.0005 30.3 2.0 30 37-66 70-102 (125)
220 2cs3_A Protein C14ORF4, MY039 37.1 27 0.00093 26.4 3.2 60 214-314 26-87 (93)
221 1bbo_A Human enhancer-binding 37.0 35 0.0012 22.4 3.7 24 140-163 15-39 (57)
222 1m3v_A FLIN4, fusion of the LI 37.0 9.7 0.00033 30.9 0.8 44 35-78 31-80 (122)
223 1dl6_A Transcription factor II 35.2 33 0.0011 24.1 3.3 37 29-67 4-40 (58)
224 2kpi_A Uncharacterized protein 35.2 19 0.00063 25.3 1.9 32 29-65 3-36 (56)
225 1weu_A Inhibitor of growth fam 35.2 76 0.0026 24.5 5.7 47 30-77 30-86 (91)
226 2ctd_A Zinc finger protein 512 35.0 24 0.00083 27.0 2.9 55 89-151 30-87 (96)
227 1s24_A Rubredoxin 2; electron 34.9 25 0.00084 27.1 2.7 10 34-43 33-42 (87)
228 2jtn_A LIM domain-binding prot 34.9 13 0.00044 32.5 1.3 14 36-49 60-73 (182)
229 2d9h_A Zinc finger protein 692 34.7 13 0.00044 26.7 1.1 47 271-321 13-65 (78)
230 2hf1_A Tetraacyldisaccharide-1 34.2 13 0.00045 27.3 1.0 32 31-65 3-34 (68)
231 1wfk_A Zinc finger, FYVE domai 34.1 29 0.001 26.6 3.1 30 37-66 10-42 (88)
232 2pk7_A Uncharacterized protein 33.8 14 0.00047 27.2 1.1 32 31-65 3-34 (69)
233 2lv2_A Insulinoma-associated p 33.6 23 0.00079 26.8 2.4 46 271-320 34-82 (85)
234 2yw8_A RUN and FYVE domain-con 33.3 23 0.00079 26.7 2.4 31 36-66 19-52 (82)
235 1x5w_A Zinc finger protein 64, 32.8 41 0.0014 23.3 3.7 17 133-149 43-60 (70)
236 1x6e_A Zinc finger protein 24; 32.3 37 0.0013 23.8 3.3 31 133-163 20-52 (72)
237 2ctd_A Zinc finger protein 512 32.3 29 0.00099 26.6 2.9 57 256-320 29-88 (96)
238 1x4w_A Hypothetical protein FL 32.2 27 0.00093 25.5 2.4 40 36-75 15-58 (67)
239 2xjy_A Rhombotin-2; oncoprotei 31.8 8.8 0.0003 31.4 -0.3 44 34-78 27-77 (131)
240 2e72_A POGO transposable eleme 31.4 38 0.0013 22.9 2.8 28 123-154 12-40 (49)
241 1x4u_A Zinc finger, FYVE domai 31.2 40 0.0014 25.4 3.5 31 36-66 14-47 (84)
242 2f42_A STIP1 homology and U-bo 30.5 11 0.00038 33.2 0.1 39 222-260 123-169 (179)
243 2wbt_A B-129; zinc finger; 2.7 29.9 31 0.0011 27.3 2.8 56 257-321 70-127 (129)
244 2gmg_A Hypothetical protein PF 29.5 27 0.00092 27.9 2.2 30 46-77 64-94 (105)
245 2lv2_A Insulinoma-associated p 29.3 44 0.0015 25.1 3.4 50 94-151 29-81 (85)
246 2rgt_A Fusion of LIM/homeobox 28.9 15 0.00051 31.6 0.7 43 35-78 32-76 (169)
247 2lce_A B-cell lymphoma 6 prote 28.2 61 0.0021 22.7 3.9 41 103-147 23-66 (74)
248 2ehe_A Four and A half LIM dom 27.5 57 0.002 23.9 3.8 33 35-67 42-74 (82)
249 1f2i_G Fusion of N-terminal 17 26.8 41 0.0014 23.4 2.7 40 122-163 18-59 (73)
250 3lqh_A Histone-lysine N-methyl 26.6 66 0.0022 28.2 4.5 41 38-78 4-65 (183)
251 1flk_A TNF receptor associated 26.4 15 0.00052 33.4 0.2 28 289-316 7-39 (228)
252 2cot_A Zinc finger protein 435 26.3 64 0.0022 22.7 3.8 23 140-162 32-55 (77)
253 2eps_A POZ-, at HOOK-, and zin 26.3 29 0.001 22.9 1.7 37 122-162 11-50 (54)
254 3t7l_A Zinc finger FYVE domain 26.1 31 0.0011 26.5 2.0 31 36-66 20-53 (90)
255 2vrw_B P95VAV, VAV1, proto-onc 26.0 31 0.0011 33.9 2.5 39 34-72 355-397 (406)
256 1zw8_A Zinc-responsive transcr 25.9 40 0.0014 23.9 2.5 47 270-318 8-64 (64)
257 1y02_A CARP2, FYVE-ring finger 25.4 32 0.0011 28.1 2.0 30 37-66 20-52 (120)
258 2ghf_A ZHX1, zinc fingers and 24.6 67 0.0023 25.0 3.8 50 93-150 18-74 (102)
259 3zyq_A Hepatocyte growth facto 24.5 42 0.0014 30.4 2.9 33 34-66 162-197 (226)
260 4gzn_C ZFP-57, zinc finger pro 24.2 48 0.0017 23.0 2.6 31 133-163 10-42 (60)
261 1ncs_A Peptide M30F, transcrip 23.8 27 0.00093 22.3 1.1 40 275-316 2-42 (47)
262 2d8z_A Four and A half LIM dom 23.5 20 0.00068 25.6 0.4 32 35-66 30-61 (70)
263 1x4l_A Skeletal muscle LIM-pro 23.2 25 0.00085 25.2 0.9 33 35-67 34-66 (72)
264 1x61_A Thyroid receptor intera 23.1 18 0.00061 26.0 0.0 32 35-66 32-63 (72)
265 3mjh_B Early endosome antigen 22.6 55 0.0019 20.5 2.2 25 292-320 6-31 (34)
266 1wjv_A Cell growth regulating 22.4 19 0.00065 27.2 0.1 34 132-165 15-49 (79)
267 1x6h_A Transcriptional repress 22.2 74 0.0025 22.7 3.5 18 133-150 53-71 (86)
268 1rut_X Flinc4, fusion protein 21.9 10 0.00035 33.3 -1.8 43 35-78 31-80 (188)
269 1x3c_A Zinc finger protein 292 21.9 67 0.0023 23.8 3.0 29 289-319 25-54 (73)
270 2cu8_A Cysteine-rich protein 2 21.8 27 0.00094 25.3 0.9 31 36-66 36-67 (76)
271 2jvx_A NF-kappa-B essential mo 21.7 31 0.0011 20.6 0.9 15 35-49 2-16 (28)
272 1sp2_A SP1F2; zinc finger, tra 21.6 91 0.0031 17.1 3.2 25 291-317 2-27 (31)
273 2cuq_A Four and A half LIM dom 21.3 47 0.0016 24.2 2.2 23 56-78 2-26 (80)
274 2gqj_A Zinc finger protein KIA 21.2 24 0.00081 26.9 0.4 54 260-321 23-81 (98)
275 2c6a_A Ubiquitin-protein ligas 21.1 42 0.0014 22.5 1.5 29 31-66 8-36 (46)
276 2cur_A Skeletal muscle LIM-pro 20.2 23 0.00077 25.2 0.1 31 36-66 31-61 (69)
No 1
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=100.00 E-value=2.8e-43 Score=324.67 Aligned_cols=190 Identities=79% Similarity=1.341 Sum_probs=139.3
Q ss_pred HhhcccCcccCCCCCeEeecCCCchhHHhhCCCCCccCCCCCCCcccccChhHHHHHhhhccCcceeecCceEEEeeecc
Q psy17006 257 AETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATDI 336 (446)
Q Consensus 257 c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~~Cp~~~~~C~~~g~~~~l~~H~~~~H~~~~~~~~~~~~f~~~~~ 336 (446)
++++.+||+|+.+||++.+++.++..||++|+|+|+.||+++.+|+|+|..++|..|+.++|+++.+++|++++|+++++
T Consensus 2 ~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i~f~~~~~ 81 (193)
T 2a25_A 2 ANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDI 81 (193)
T ss_dssp ----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEEEEEEECC
T ss_pred ccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceEEEEeccc
Confidence 57889999999999999999999999999999999999999899999999999999999999998788999999999999
Q ss_pred ccccceeEEEEeeecceEEEEEEEeecc-cCceeEEEEEEEeCCcccccccEEEEEEecCCceEEEEecccchhhhhhhh
Q psy17006 337 NLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASA 415 (446)
Q Consensus 337 ~~~~~~~~~~~~~~~g~~Fll~~~~~~~-~~~~~~~~~v~~iG~~~~a~~f~Yel~v~~~~r~l~~~~~~~s~~~~~~~~ 415 (446)
+++++.+|++++++||++|+|+++++.. .|.+++||+|++|||+++|++|+|+|++.+++|+|+|++.|+|++++++++
T Consensus 82 ~l~~~~~~~~v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~~~~~ 161 (193)
T 2a25_A 82 NLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATA 161 (193)
T ss_dssp C----CEEEEEEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCSHHH
T ss_pred ccccceeEEEEEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhccccc
Confidence 9999999999999999999999998764 346678999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEehhhHhhhhcCCceEEEEEEeC
Q psy17006 416 IMNSDCLVFDSNIAQLFADNKNLGINVTIAT 446 (446)
Q Consensus 416 ~~~~dcl~i~~~~~~~f~~~~~l~~~v~i~~ 446 (446)
++++|||+||++++++|+++|+|+++|+|++
T Consensus 162 ~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~~ 192 (193)
T 2a25_A 162 IMNSDCLVFDTSIAQLFAENGNLGINVTISM 192 (193)
T ss_dssp HHTTCSEEEEHHHHHHHCSSSEEEEEEEEEE
T ss_pred ccCCCEEEEcHHHHHhhcCCCeEEEEEEEEe
Confidence 9999999999999999999999999999974
No 2
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.87 E-value=4.9e-23 Score=186.12 Aligned_cols=132 Identities=19% Similarity=0.357 Sum_probs=118.1
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhccccccccCC
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVTFPCRYQMN 101 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l~v~C~~~~~ 101 (446)
.+++++.|.||||.+++.+|+ ++.|||+||..|+.++ ..||+||.++.. .++.++++++.+++|+|+| .
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n--~ 88 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--E 88 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCS--T
T ss_pred ccCCCCCCCCCCCChhhcCcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCC--C
Confidence 467889999999999999997 6789999999999874 389999998864 5889999999999999998 4
Q ss_pred CCeeeecCCChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHh-hcCCCcceecCccEEEEeecc
Q psy17006 102 GCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLN-QSHKTITTLQGEDIVFLATDI 168 (446)
Q Consensus 102 GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~-~~h~~~~~c~~c~~~f~~~~~ 168 (446)
||+|.+++.++++|+++|+|+++.|| +|++.+.+++|..|++ .+..+.+.|++|+..+...+.
T Consensus 89 GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~~l 152 (170)
T 3hcs_A 89 GCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDK 152 (170)
T ss_dssp TCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECTTTCCEEEGGGH
T ss_pred CCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHHHHhhhhCCCCCeECCCCCCccCHHHH
Confidence 99999999999999999999999998 6999999999999996 555688999999987765443
No 3
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=99.86 E-value=9.3e-23 Score=187.64 Aligned_cols=131 Identities=75% Similarity=1.320 Sum_probs=79.5
Q ss_pred HhhhccccccccCCCCeeeecCCChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhhcCCCcceecCccEEEEeec
Q psy17006 88 VAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFLATD 167 (446)
Q Consensus 88 ~~~~l~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~~~~c~~c~~~f~~~~ 167 (446)
++++++++|+|++.||++.+++.++.+||++|+|+|+.||.++..|+|+|..++|.+|+...|..+.+.+++++.|++.+
T Consensus 1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i~f~~~~ 80 (193)
T 2a25_A 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATD 80 (193)
T ss_dssp -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEEEEEEEC
T ss_pred CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceEEEEecc
Confidence 36789999999999999999999999999999999999999877799999999999999999998888999999999999
Q ss_pred cCcccccceEEEeeeccceEEEEEEeeecc-cchhhHHHHHHhcCcccccce
Q psy17006 168 INLAGAVDWVMMQSCFGHHFMLVLEKQEID-GRQHFFAIVQLIGSRKQAEHF 218 (446)
Q Consensus 168 ~~~~~~~~~~~~~~c~~~~f~~~~~k~~~~-~~~~~~~~~q~~g~~~~~~~~ 218 (446)
.+++++++|+++|+|+|++|++++++.+.. +.+.||+.++++|++.++.++
T Consensus 81 ~~l~~~~~~~~v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f 132 (193)
T 2a25_A 81 INLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENF 132 (193)
T ss_dssp CC----CEEEEEEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTE
T ss_pred cccccceeEEEEEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcce
Confidence 999999999999999999999999988753 456789999999999888664
No 4
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.59 E-value=4.8e-16 Score=131.69 Aligned_cols=92 Identities=22% Similarity=0.439 Sum_probs=80.2
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhccccccccCC
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVTFPCRYQMN 101 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l~v~C~~~~~ 101 (446)
.+.+.+.+.||||.+++.+|+ +..|||+||..|+.++ ..||+||.++.. .++..+++++++++|.|+| .
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n--~ 88 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--E 88 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS--T
T ss_pred ccCCCCCCCCCcCChhhcCeE-ECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC--C
Confidence 468889999999999999997 5578999999999864 389999998863 4889999999999999997 6
Q ss_pred CCeeeecCCChhhHhhhCCCccc
Q psy17006 102 GCNVVLLHTEKPEHEDACEYRPY 124 (446)
Q Consensus 102 GC~~~~~~~~~~~H~~~C~~~~v 124 (446)
||+|.+++.++++|+++|.+...
T Consensus 89 gC~~~~~~~~l~~H~~~c~~~~~ 111 (118)
T 3hct_A 89 GCLHKMELRHLEDHQAHCEFALL 111 (118)
T ss_dssp TCCCEEEGGGSGGGTSSSCC---
T ss_pred CCCCEEeeHHHHHHHHHchhhhh
Confidence 99999999999999999988653
No 5
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.56 E-value=1.1e-16 Score=139.88 Aligned_cols=89 Identities=26% Similarity=0.488 Sum_probs=77.6
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCc------------cccchHHHHHhhhc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLG------------NIRNLAMEKVAETV 92 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~------------~~~~~~~e~~~~~l 92 (446)
.+.+++.|.||||.+++.+|+ +..|||+||..|+.++ ..||+||.++. .+++.++++++.+|
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv-~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred hccCCcCcCCCCCChhhcCcE-ECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 367889999999999999997 6788999999999874 37999998642 13789999999999
Q ss_pred cccccccCCCCeeeecCCChhh-HhhhCCC
Q psy17006 93 TFPCRYQMNGCNVVLLHTEKPE-HEDACEY 121 (446)
Q Consensus 93 ~v~C~~~~~GC~~~~~~~~~~~-H~~~C~~ 121 (446)
+|+|+| .||.|.++++++++ |+..|+-
T Consensus 104 ~v~Cpn--~GC~~~~~l~~l~~~H~~~~~~ 131 (141)
T 3knv_A 104 PAVCPS--DGCTWKGTLKEYESCHEGRCPL 131 (141)
T ss_dssp EEECCS--TTCCCEEEHHHHHHHTTTCCHH
T ss_pred ccccCC--CCCCCEeEHHHHHHHHHHHhHH
Confidence 999999 69999999999998 9987753
No 6
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.53 E-value=8.7e-16 Score=129.57 Aligned_cols=90 Identities=19% Similarity=0.407 Sum_probs=78.8
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc----ccchHHHHHhhhccccccccC
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN----IRNLAMEKVAETVTFPCRYQM 100 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~----~~~~~~e~~~~~l~v~C~~~~ 100 (446)
.+++.+.+.||||.+++.+|+ +..|||.||..|+.++ ..||.||.++.. ..+..+.++++++++.|+|.
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~- 94 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ- 94 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST-
T ss_pred HHhccCCCCCCCCCcHhcCcE-EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC-
Confidence 456677899999999999998 4677999999999753 479999998863 25688999999999999996
Q ss_pred CCCeeeecCCChhhHhhhCCCc
Q psy17006 101 NGCNVVLLHTEKPEHEDACEYR 122 (446)
Q Consensus 101 ~GC~~~~~~~~~~~H~~~C~~~ 122 (446)
||+|.++++++++|+++|.++
T Consensus 95 -gC~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 95 -DCNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp -TCCCEEEHHHHHHHHHTSCCC
T ss_pred -CCcchhhHhHHHHHHHHhhcc
Confidence 999999999999999999875
No 7
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.24 E-value=2.2e-12 Score=116.02 Aligned_cols=97 Identities=18% Similarity=0.315 Sum_probs=86.5
Q ss_pred eeeeccCcccccCcccCC-----CCCCCCCCCCCc---cccHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCC
Q psy17006 218 FTYCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEY 289 (446)
Q Consensus 218 ~~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~---~r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~ 289 (446)
..++++||++|..|..+. ..||.||.++.. .++..+++.+.++.+.|+| .||++.+++.++..|+++|+|
T Consensus 31 pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n--~GC~~~~~~~~l~~H~~~C~~ 108 (170)
T 3hcs_A 31 AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEF 108 (170)
T ss_dssp EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCS--TTCCCEEEGGGHHHHHTTCTT
T ss_pred cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCC--CCCCceecHhHHHHHHhcCCc
Confidence 356899999999999873 389999999875 4678899999999999998 499999999999999999999
Q ss_pred CCccCCCCCCCcccccChhHHHHHhhhccCc
Q psy17006 290 RPYHCPCPGASCKWSGALDQVMGHLNQSHKT 320 (446)
Q Consensus 290 ~~~~Cp~~~~~C~~~g~~~~l~~H~~~~H~~ 320 (446)
+++.|| +|++.+.+.+|..|++.....
T Consensus 109 ~~v~C~----~C~~~~~r~~l~~H~~~~C~~ 135 (170)
T 3hcs_A 109 ALMDCP----QCQRPFQKFHINIHILKDCPR 135 (170)
T ss_dssp SEEECT----TTCCEEEGGGHHHHHHHTCTT
T ss_pred eeeECC----CCChHHHHHHHHHHhhhhCCC
Confidence 999998 699999999999999766554
No 8
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.83 E-value=1.1e-09 Score=87.84 Aligned_cols=69 Identities=17% Similarity=0.362 Sum_probs=55.9
Q ss_pred CccCCCCceecccccCcCcCcccccc-ccceeccCcccCC------CCCCCCCCCCc----cccchHHHHHhhhcccccc
Q psy17006 29 TSTDLASLFECPVCFDYVLPPIIQCQ-SGHLVCSNCRPKL------SCCSTCRGPLG----NIRNLAMEKVAETVTFPCR 97 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~-~GH~~C~~C~~~~------~~CP~Cr~~~~----~~~~~~~e~~~~~l~v~C~ 97 (446)
..+++.+.+.||||.+++.+|+ ... |||.||..|+..+ ..||.||.++. ..+|..+++++..+.-.-.
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred ccccCCcCCCCCCCChhhcCce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 3467888999999999999998 445 7999999999763 48999999873 3578999999888766544
Q ss_pred c
Q psy17006 98 Y 98 (446)
Q Consensus 98 ~ 98 (446)
+
T Consensus 85 ~ 85 (92)
T 3ztg_A 85 Y 85 (92)
T ss_dssp C
T ss_pred H
Confidence 3
No 9
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.83 E-value=6.1e-10 Score=86.56 Aligned_cols=63 Identities=16% Similarity=0.375 Sum_probs=51.8
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVT 93 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l~ 93 (446)
..++.+.+.||||.+++.+|+ ...|||+||..|+.++ ..||.||.++.. .+|..+++++..+.
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv-~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEE-EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred CcCCcccCCCCCccccccCCE-EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 356788999999999999998 4567999999999753 479999998852 47888888887654
No 10
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.77 E-value=4.2e-09 Score=85.72 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=54.7
Q ss_pred CccCCCCceecccccCcCcCcccccccc-ceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhcccc
Q psy17006 29 TSTDLASLFECPVCFDYVLPPIIQCQSG-HLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVTFP 95 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~G-H~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~v~ 95 (446)
...++.+.|.||||+++|.+|| ...+| |+||..|+.++ ..||.|++++.. ++|..++++|..+.-.
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV-~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPV-VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEE-ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHH
T ss_pred hhhcCcHhcCCcCccccccCCe-ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHH
Confidence 3467788999999999999998 44568 99999998864 579999998863 5899999998877543
No 11
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.72 E-value=5.3e-09 Score=82.84 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=53.1
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVT 93 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~ 93 (446)
..++.+.|.||||+++|.+|| ...+||+||..|+.++ ..||.|++++.. .+|.++++++..+.
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV-~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPV-RLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCe-ECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence 456788999999999999998 4457999999999874 689999998863 58999998887763
No 12
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.67 E-value=3.5e-09 Score=82.26 Aligned_cols=49 Identities=24% Similarity=0.694 Sum_probs=41.7
Q ss_pred CccCCCCceecccccCcCcCccccccccceeccCcccC-----------CCCCCCCCCCCc
Q psy17006 29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----------LSCCSTCRGPLG 78 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~-----------~~~CP~Cr~~~~ 78 (446)
..+++.+.+.|+||.+.+.+|+ ...|||.||..|+.+ ...||.||.++.
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~-~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPL-SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCC-CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hHhhcccCCCCcCCCcccCCee-ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 3467888999999999999998 456799999999985 247999999885
No 13
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.66 E-value=1.4e-08 Score=83.01 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=53.2
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVT 93 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~ 93 (446)
..++.+.|.||||+++|.+|| ...|||+||..|+.++ ..||.|+.++.. ++|..+++++..+.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV-~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPV-RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEE-EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred hccCcHhhCCcCccCcccCCe-ECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 456788999999999999998 4457999999999764 589999998863 58999999988764
No 14
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=6.3e-09 Score=81.73 Aligned_cols=50 Identities=26% Similarity=0.715 Sum_probs=42.2
Q ss_pred CCccCCCCceecccccCcCcCccccccccceeccCcccC----------CCCCCCCCCCCc
Q psy17006 28 GTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----------LSCCSTCRGPLG 78 (446)
Q Consensus 28 ~~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~----------~~~CP~Cr~~~~ 78 (446)
+..+++.+.+.|+||.+.+.+|+ ...|||.||..|+.+ ...||.||.++.
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 11 GILVNVKEEVTCPICLELLTQPL-SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCCCCCTTTCSCCSSCB-CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HHHHHccCCCCCCCCCcccCCce-eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 34567888999999999999997 346799999999975 358999999876
No 15
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.66 E-value=3.8e-09 Score=83.02 Aligned_cols=59 Identities=22% Similarity=0.555 Sum_probs=46.2
Q ss_pred CCccCCCCceecccccCcCcCccccccccceeccCcccC----------CCCCCCCCCCCcc---ccchHHHH
Q psy17006 28 GTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----------LSCCSTCRGPLGN---IRNLAMEK 87 (446)
Q Consensus 28 ~~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~----------~~~CP~Cr~~~~~---~~~~~~e~ 87 (446)
...+++.+.+.|+||.+.+.+|+ ...|||.||..|+.+ ...||.||.++.. .+|..+++
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 11 SVLEMIKEEVTCPICLELLKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCCCCTTTSCTTTCSCCSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HHHHhCccCCCCcCCChhhCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 44567888999999999999998 456799999999975 3479999998862 34544443
No 16
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=98.65 E-value=2e-09 Score=83.32 Aligned_cols=36 Identities=19% Similarity=0.500 Sum_probs=31.5
Q ss_pred CChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhh
Q psy17006 110 TEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQ 148 (446)
Q Consensus 110 ~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~ 148 (446)
.+++.|++.|+|.+|.||+ +|+..+.+++|.+|+..
T Consensus 3 ~~l~~H~~~C~~~~v~C~~---~C~~~v~r~~l~~H~~~ 38 (76)
T 2yuc_A 3 SGSSGHLNTCSFNVIPCPN---RCPMKLSRRDLPAHLQH 38 (76)
T ss_dssp CSCSCCCCCCCCSCCBCTT---CCSCBCCSSSSTTTTTT
T ss_pred hHHHHHHHHCCCcccCCCc---cccHHhhHhHHHhhCHh
Confidence 5788999999999999986 79999999999998863
No 17
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.62 E-value=2.6e-09 Score=87.02 Aligned_cols=64 Identities=25% Similarity=0.570 Sum_probs=52.0
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVT 93 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~ 93 (446)
.+++.+.+.|+||.+.+.+|+..-.|||.||..|+.++ ..||.||.++.. .+|..+++++..++
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 45667889999999999999743357999999999764 589999998863 47888888887664
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.1e-08 Score=78.40 Aligned_cols=60 Identities=20% Similarity=0.448 Sum_probs=46.3
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc--ccchHHHHHhh
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN--IRNLAMEKVAE 90 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~--~~~~~~e~~~~ 90 (446)
.++..+.+.|+||.+.+.+|+ ...|||.||..|+.++ ..||+||.++.. .++..+...+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPV-VTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ 74 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEE-ECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHS
T ss_pred cccCCCCCCCcCCCchhcCee-EccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHH
Confidence 456667899999999999998 4567999999999874 579999998763 24555544443
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2e-08 Score=76.75 Aligned_cols=49 Identities=18% Similarity=0.520 Sum_probs=42.0
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
.+++++.+.|+||.+.+.+|+....|||.||..|+.++ ..||+||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 46788899999999999999843367999999999764 58999999886
No 20
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=1.2e-08 Score=85.75 Aligned_cols=63 Identities=22% Similarity=0.481 Sum_probs=50.9
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC--CCCCCCCCCCcc---ccchHHHHHhhhc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCSTCRGPLGN---IRNLAMEKVAETV 92 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~CP~Cr~~~~~---~~~~~~e~~~~~l 92 (446)
.+.+.+.+.||||.+++.+|+....|||.||..|+..+ ..||+||.++.. .+|..+.+++..+
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLC 83 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHH
Confidence 45667889999999999999844367999999999986 579999998752 4677777777644
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=3.2e-08 Score=75.51 Aligned_cols=48 Identities=25% Similarity=0.699 Sum_probs=40.9
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC-------CCCCCCCCCCc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCSTCRGPLG 78 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~ 78 (446)
.+++.+.+.|+||.+.+.+|+. ..|||.||..|+.++ ..||+||.++.
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 4677889999999999999983 367999999998764 27999999875
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.56 E-value=2.8e-08 Score=76.33 Aligned_cols=48 Identities=19% Similarity=0.458 Sum_probs=40.7
Q ss_pred ccCCCCceecccccCcCcCcccccc-ccceeccCcccCC------CCCCCCCCCCc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQ-SGHLVCSNCRPKL------SCCSTCRGPLG 78 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~-~GH~~C~~C~~~~------~~CP~Cr~~~~ 78 (446)
.+++.+.+.|+||.+++.+|+ ... |||.||..|+.++ ..||+||+++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCE-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCe-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 467788999999999999998 445 7999999999763 48999999753
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2.6e-08 Score=74.67 Aligned_cols=48 Identities=23% Similarity=0.636 Sum_probs=41.0
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLG 78 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~ 78 (446)
.+.+.+.+.|+||.+.+.+|+ ...|||.||..|+.++ ..||+||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPK-QTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred hhcCCcCCCCCCCChHhcCee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 356778899999999999998 4577999999999853 47999999875
No 24
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.48 E-value=1.3e-08 Score=86.32 Aligned_cols=61 Identities=28% Similarity=0.628 Sum_probs=49.8
Q ss_pred cCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc----ccchHHHHHhhhc
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN----IRNLAMEKVAETV 92 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~----~~~~~~e~~~~~l 92 (446)
+.+.+.+.||||.+++.+|+ ...|||.||..|+..+ ..||.||.++.. .+|..+.+++..+
T Consensus 47 ~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFRPI-TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHHHHHTBCTTTSSBCSSEE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred HhCccCCCCCcCChHHcCcE-EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 45567899999999999998 4467999999999753 489999998863 4788888887654
No 25
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.48 E-value=2e-08 Score=83.02 Aligned_cols=63 Identities=16% Similarity=0.416 Sum_probs=50.3
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc-------ccchHHHHHhhhc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN-------IRNLAMEKVAETV 92 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~-------~~~~~~e~~~~~l 92 (446)
.+++.+.+.|+||.+++.+|+....|||.||..|+.++ ..||.||.++.. .+|..+++++..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~ 82 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL 82 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence 35677889999999999999843367999999999764 589999998753 3577777777654
No 26
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.45 E-value=4.2e-08 Score=76.28 Aligned_cols=50 Identities=24% Similarity=0.675 Sum_probs=39.9
Q ss_pred CccCCCCceecccccCcCc--Ccc-ccccccceeccCcccCC-----CCCCCCCCCCc
Q psy17006 29 TSTDLASLFECPVCFDYVL--PPI-IQCQSGHLVCSNCRPKL-----SCCSTCRGPLG 78 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~--~Pv-~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~ 78 (446)
...++.+.+.||||.+.+. ++. +.|.|||.||..|+.++ ..||.||+++.
T Consensus 4 ~~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 4 SPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CSCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 4566788899999999984 343 35667999999998764 47999999875
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.45 E-value=1.3e-08 Score=83.13 Aligned_cols=67 Identities=22% Similarity=0.512 Sum_probs=49.4
Q ss_pred CccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHH---hhhcccc
Q psy17006 29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKV---AETVTFP 95 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~---~~~l~v~ 95 (446)
..+.+.+.+.|+||.+++.+|+..-.|||.||..|+.++ ..||.||.++.. .+++.++.+ +.+++..
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~~~ 92 (100)
T 3lrq_A 15 SVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLC 92 (100)
T ss_dssp HHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHCC-
T ss_pred ccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHHHH
Confidence 346778899999999999999832567999999999864 489999998752 345544443 4445443
No 28
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=8e-08 Score=73.09 Aligned_cols=47 Identities=21% Similarity=0.583 Sum_probs=39.3
Q ss_pred cCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
+...+.+.|+||.+.+.+|+ ...|||.||..|+.++ ..||+||.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPV-SLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEE-EETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred ccCCCCCCCccCCcccCCCE-EccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 34456789999999999997 4467999999999864 57999999875
No 29
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.43 E-value=2.2e-08 Score=87.97 Aligned_cols=60 Identities=28% Similarity=0.619 Sum_probs=49.6
Q ss_pred CCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc----ccchHHHHHhhhcc
Q psy17006 33 LASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN----IRNLAMEKVAETVT 93 (446)
Q Consensus 33 l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~----~~~~~~e~~~~~l~ 93 (446)
+.+.+.|+||.+++.+|+ ...|||+||..|+..+ ..||+||.++.. .+|..+++++..+.
T Consensus 75 l~~~~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPV-TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHTBCTTTSSBCSSEE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred CccCCEeecCChhhcCCE-EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 456789999999999998 4577999999999864 379999998863 37888888887654
No 30
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.42 E-value=8.9e-08 Score=79.98 Aligned_cols=62 Identities=19% Similarity=0.563 Sum_probs=47.0
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc----------ccchHHHHHhhhc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN----------IRNLAMEKVAETV 92 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~----------~~~~~~e~~~~~l 92 (446)
...+.+.+.|+||.+++.+|+. -.|||.||..|+.++ ..||.||.++.. ..|..+..++..+
T Consensus 9 ~~~~~~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 9 AIPSLSECQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp CCCCHHHHBCTTTCSBCSSCEE-CTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred ccCCCCCCCCccCCcccCceeE-cCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence 3456678999999999999983 367999999999875 379999998752 1355565555443
No 31
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.42 E-value=4.7e-08 Score=87.09 Aligned_cols=65 Identities=22% Similarity=0.460 Sum_probs=51.5
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc----ccchHHHHHhhhccc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN----IRNLAMEKVAETVTF 94 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~----~~~~~~e~~~~~l~v 94 (446)
.+++.+.+.||||.+++.+|+....|||.||..|+.++ ..||+||.++.. .+|..+++++..+.-
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 45667889999999999999843367999999999864 469999998852 378889999887753
No 32
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.41 E-value=3e-08 Score=85.78 Aligned_cols=58 Identities=21% Similarity=0.551 Sum_probs=43.5
Q ss_pred CCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCccc-cchHHHHHhh
Q psy17006 32 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGNI-RNLAMEKVAE 90 (446)
Q Consensus 32 ~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~~-~~~~~e~~~~ 90 (446)
.+++.+.||||.+.+.+|+ ...|||.||..|+.++ ..||.||.++... .+..+...++
T Consensus 49 ~~~~~~~C~iC~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~ 111 (138)
T 4ayc_A 49 VLENELQCIICSEYFIEAV-TLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCIN 111 (138)
T ss_dssp HHHHHSBCTTTCSBCSSEE-EETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHH
T ss_pred hccccCCCcccCcccCCce-ECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHH
Confidence 3456789999999999998 4567999999998764 5799999998642 3444333333
No 33
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.41 E-value=1.9e-07 Score=67.66 Aligned_cols=44 Identities=23% Similarity=0.486 Sum_probs=37.7
Q ss_pred CCceecccccCcCcCccccccccceeccCcccCC-CCCCCCCCCCc
Q psy17006 34 ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-SCCSTCRGPLG 78 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~CP~Cr~~~~ 78 (446)
.+.+.|+||.+.+.+|+ .-.|||.||..|+.+. ..||+||+++.
T Consensus 4 ~~~~~C~IC~~~~~~p~-~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK-LLPCLHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCS-CSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeE-EcCCCCcccHHHHccCCCCCCcCCcEee
Confidence 46788999999999997 4456999999999875 58999999875
No 34
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.6e-07 Score=74.15 Aligned_cols=49 Identities=29% Similarity=0.690 Sum_probs=41.2
Q ss_pred CccCCCCceecccccCcCcC----ccccccccceeccCcccCC-------CCCCCCCCCCc
Q psy17006 29 TSTDLASLFECPVCFDYVLP----PIIQCQSGHLVCSNCRPKL-------SCCSTCRGPLG 78 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~~----Pv~qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~ 78 (446)
..+.+.+.+.|+||.+.+.+ |+ ...|||.||..|+.++ ..||.||.++.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPK-LLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEE-ECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred ChhhccCCCCCccCCccccccCCCeE-ECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 45678889999999999998 87 3467999999999864 48999999875
No 35
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=1.3e-07 Score=76.31 Aligned_cols=62 Identities=19% Similarity=0.389 Sum_probs=49.6
Q ss_pred CCCCceecccccCcCcCccccccccceeccCcccCC----------CCCCC--CCCC-Cc---cccchHHHHHhhhcc
Q psy17006 32 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----------SCCST--CRGP-LG---NIRNLAMEKVAETVT 93 (446)
Q Consensus 32 ~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----------~~CP~--Cr~~-~~---~~~~~~~e~~~~~l~ 93 (446)
...+.|.||||+++|.+||..-.|||+||..|+.++ ..||. |+.. +. ..+|..|+++|..+.
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 345779999999999999842247999999998763 28999 9866 54 358999999998775
No 36
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.1e-07 Score=71.49 Aligned_cols=48 Identities=27% Similarity=0.691 Sum_probs=39.8
Q ss_pred ccCCCCceecccccCcCcCc-------cccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 30 STDLASLFECPVCFDYVLPP-------IIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~P-------v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
.+.+.+.+.|+||.+.+.+| + .-.|||.||..|+.++ ..||+||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEE-ECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeE-eCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 45667889999999999887 4 4456999999999874 58999999875
No 37
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=2.5e-07 Score=68.47 Aligned_cols=43 Identities=28% Similarity=0.763 Sum_probs=36.3
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC-------CCCCCC
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCSTC 73 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~CP~C 73 (446)
.+.+.+.+.|+||.+.+.+|+ ...|||.||..|+.++ ..||+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPV-TIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCE-ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeE-EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 467888999999999999998 3477999999998763 379987
No 38
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.32 E-value=1.5e-07 Score=79.09 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=60.0
Q ss_pred eeeccCcccccCcccCC-----CCCCCCCCCCCcc---ccHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCCC
Q psy17006 219 TYCQSGHLVCSNCRPKL-----SCCSTCRGPLGNI---RNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYR 290 (446)
Q Consensus 219 ~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~~---r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~ 290 (446)
...++||++|..|..+. ..||.||.++... ++..+++...++++.|+| .||++.+++.++..|+++|.+.
T Consensus 32 ~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n--~gC~~~~~~~~l~~H~~~c~~~ 109 (118)
T 3hct_A 32 VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFA 109 (118)
T ss_dssp EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS--TTCCCEEEGGGSGGGTSSSCC-
T ss_pred EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC--CCCCCEEeeHHHHHHHHHchhh
Confidence 34588999999999763 3899999998753 578889999999999997 6999999999999999999886
Q ss_pred C
Q psy17006 291 P 291 (446)
Q Consensus 291 ~ 291 (446)
.
T Consensus 110 ~ 110 (118)
T 3hct_A 110 L 110 (118)
T ss_dssp -
T ss_pred h
Confidence 4
No 39
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=3e-07 Score=88.29 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=52.2
Q ss_pred cCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVT 93 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l~ 93 (446)
.++.+.|.||||.+++.+|| ...|||+||..|+.+. ..||.|+.++.. ++|..++++|..+.
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv-~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEE-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCcccCCcCcCCHhcCCe-ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 46668899999999999998 4557999999999863 349999999863 58999999988765
No 40
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.9e-08 Score=75.79 Aligned_cols=49 Identities=22% Similarity=0.544 Sum_probs=42.0
Q ss_pred ccCCCCceecccccCcCcCccccccccce-eccCcccCCCCCCCCCCCCcc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCSTCRGPLGN 79 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~CP~Cr~~~~~ 79 (446)
.+++.+.+.|+||.+.+.+|++ -.|||. ||..|+.+...||+||.++..
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAVDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred HHcCCCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhhCCCCCccCCceecC
Confidence 3556678899999999999983 456999 999999999999999998864
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=2.5e-07 Score=67.06 Aligned_cols=43 Identities=28% Similarity=0.741 Sum_probs=36.0
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC-------CCCCCC
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCSTC 73 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~CP~C 73 (446)
.+++.+.+.|+||.+.+.+|+ ...|||.||..|+.++ ..||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPV-IIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCC-CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccE-eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 466778899999999999997 4567999999998754 478887
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.25 E-value=5.7e-08 Score=80.57 Aligned_cols=47 Identities=28% Similarity=0.853 Sum_probs=39.1
Q ss_pred cCCCCceecccccCcCcCccccccccceeccCcccCC-------CCCCCCCCCCc
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCSTCRGPLG 78 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~CP~Cr~~~~ 78 (446)
+.+.+.+.|+||.+.+.+|+ ...|||.||..|+.++ ..||.||.++.
T Consensus 16 ~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSCC-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred HhccCCCCCcccChhhcCeE-ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 34556789999999999998 4567999999998763 27999999875
No 43
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.20 E-value=4.3e-07 Score=81.66 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=52.9
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC-----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETVT 93 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~~---~~~~~~e~~~~~l~ 93 (446)
..++.+.|.||||+++|.+||. ..|||+||..|+.+. ..||.|+.++.. .+|.++.+++..+.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 4567889999999999999984 467999999999863 259999999863 58999999988764
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.20 E-value=3.3e-07 Score=76.57 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=59.5
Q ss_pred eeeccCcccccCcccC-----CCCCCCCCCCCCcc----ccHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCC
Q psy17006 219 TYCQSGHLVCSNCRPK-----LSCCSTCRGPLGNI----RNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEY 289 (446)
Q Consensus 219 ~~C~~gh~~C~~C~~~-----~~~Cp~Cr~~~~~~----r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~ 289 (446)
..-+.||++|..|..+ ...||.||.++... .+..+.++...+.+.|+|. ||++.+++.++..|+++|.+
T Consensus 37 ~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~--gC~~~~~~~~~~~H~~~C~~ 114 (116)
T 1rmd_A 37 VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ--DCNEEVSLEKYNHHVSSHKE 114 (116)
T ss_dssp EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST--TCCCEEEHHHHHHHHHTSCC
T ss_pred EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC--CCcchhhHhHHHHHHHHhhc
Confidence 3458899999999875 24899999998742 3577889999999999996 99999999999999999987
Q ss_pred C
Q psy17006 290 R 290 (446)
Q Consensus 290 ~ 290 (446)
.
T Consensus 115 ~ 115 (116)
T 1rmd_A 115 S 115 (116)
T ss_dssp C
T ss_pred c
Confidence 4
No 45
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.20 E-value=1e-06 Score=68.00 Aligned_cols=50 Identities=30% Similarity=0.511 Sum_probs=39.7
Q ss_pred CccCCCCceecccccCcCcCcc--ccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 29 TSTDLASLFECPVCFDYVLPPI--IQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~~Pv--~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
..+.+.+.+.|+||++.+..|. ..-.|||.||..|+.++ ..||+||.++.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 3456677899999999998663 22357999999999864 58999999875
No 46
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.16 E-value=2.1e-07 Score=70.43 Aligned_cols=48 Identities=27% Similarity=0.710 Sum_probs=38.4
Q ss_pred cCCCCceecccccCcCcCcc------ccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 31 TDLASLFECPVCFDYVLPPI------IQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv------~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
....+.+.|+||.+.+.+|+ ..-.|||.||..|+.++ ..||+||.++.
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 34456789999999998872 24567999999999764 68999999875
No 47
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.12 E-value=2.2e-07 Score=71.43 Aligned_cols=49 Identities=22% Similarity=0.544 Sum_probs=42.0
Q ss_pred ccCCCCceecccccCcCcCccccccccce-eccCcccCCCCCCCCCCCCcc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCSTCRGPLGN 79 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~CP~Cr~~~~~ 79 (446)
.+++.+.+.|+||.+.+.+|++ -.|||. ||..|+.++..||+||+++..
T Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 18 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAVDKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEE-ETTCCBCCCHHHHTTCSBCTTTCCBCSE
T ss_pred HhcCccCCCCCCCCCCCCCEEE-cCCCChhHHHHhhhcCccCCCcCcCccC
Confidence 3456678899999999999984 356999 999999999999999998863
No 48
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.12 E-value=3.2e-07 Score=68.39 Aligned_cols=44 Identities=30% Similarity=0.625 Sum_probs=36.1
Q ss_pred CceecccccC-cCcCcc---ccccccceeccCcccCC-----CCCCCCCCCCc
Q psy17006 35 SLFECPVCFD-YVLPPI---IQCQSGHLVCSNCRPKL-----SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~-~l~~Pv---~qC~~GH~~C~~C~~~~-----~~CP~Cr~~~~ 78 (446)
+.+.||||.+ ++.+|. ..-.|||.||..|+.++ ..||.||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 4688999999 898884 13456999999999865 47999999885
No 49
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.10 E-value=1.1e-06 Score=67.35 Aligned_cols=48 Identities=21% Similarity=0.383 Sum_probs=38.1
Q ss_pred cCCCCceecccccCcCcCc--cccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 31 TDLASLFECPVCFDYVLPP--IIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~P--v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
+...+...|+||.+.+..+ +..-.|||.||..|+.++ ..||+||.++.
T Consensus 18 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 18 NHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4455678999999999876 223356999999999874 68999999875
No 50
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.07 E-value=1.8e-06 Score=61.85 Aligned_cols=46 Identities=24% Similarity=0.439 Sum_probs=35.9
Q ss_pred CCCceecccccCcCcC---ccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 33 LASLFECPVCFDYVLP---PIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 33 l~~~l~C~iC~~~l~~---Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
+++...|+||.+.+.+ ++..-.|||.||..|+.++ ..||+||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567899999999976 4422236999999999864 58999998763
No 51
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=1.6e-06 Score=69.53 Aligned_cols=54 Identities=22% Similarity=0.450 Sum_probs=34.6
Q ss_pred ccCcccCCCCCeEeecCCCchhHHhhCCCCCccCCCCCCCcccccChhHHHHHhhhc
Q psy17006 261 TFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQS 317 (446)
Q Consensus 261 ~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~~Cp~~~~~C~~~g~~~~l~~H~~~~ 317 (446)
+++||+ .|...+.|.++++|+..||...+.|++...||.+++.+.+|.+|++..
T Consensus 37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~C 90 (100)
T 2yre_A 37 LIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMC 90 (100)
T ss_dssp EEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTC
T ss_pred eeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhC
Confidence 556664 466666666666666666666666666666666666666666666543
No 52
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=1.5e-06 Score=66.33 Aligned_cols=50 Identities=24% Similarity=0.443 Sum_probs=39.8
Q ss_pred ccCCCCceecccccCcCcCcc--ccccccceeccCcccCC----CCCCCCCCCCcc
Q psy17006 30 STDLASLFECPVCFDYVLPPI--IQCQSGHLVCSNCRPKL----SCCSTCRGPLGN 79 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv--~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~ 79 (446)
..++.+...|+||.+.+..|. ....|||.||..|+.++ ..||+||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 356667889999999998774 22367999999999864 589999998753
No 53
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.04 E-value=1.6e-06 Score=64.99 Aligned_cols=45 Identities=20% Similarity=0.526 Sum_probs=36.9
Q ss_pred CceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCcc
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN 79 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~ 79 (446)
+...|+||.+.+.+|+..-.|||.||..|+.++ ..||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 456899999999997534457999999999763 689999998863
No 54
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.00 E-value=5.7e-07 Score=66.43 Aligned_cols=44 Identities=30% Similarity=0.831 Sum_probs=36.3
Q ss_pred CceecccccCcCcCcc------ccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLPPI------IQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv------~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
+.+.|+||.+.+.+|. ....|||.||..|+.++ ..||.||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 4688999999998872 24567999999999864 58999999876
No 55
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=9.3e-07 Score=66.76 Aligned_cols=47 Identities=26% Similarity=0.520 Sum_probs=39.1
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
.+++.+.+.|+||.+.+.+ + .-.|||.||..|+.++ ..||+||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-L-ILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-E-EETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred hhcCCCCCCCeeCCcCccC-c-ccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 3566778999999999988 5 4456999999999864 57999999875
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.99 E-value=2.2e-07 Score=80.70 Aligned_cols=69 Identities=25% Similarity=0.393 Sum_probs=55.1
Q ss_pred eeeeccCcccccCcccCC-----CCCCCCCCCCCc------------cccHHHHHHHhhcccCcccCCCCCeEeecCCCc
Q psy17006 218 FTYCQSGHLVCSNCRPKL-----SCCSTCRGPLGN------------IRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 280 (446)
Q Consensus 218 ~~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~------------~r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l 280 (446)
..+.++||++|..|..+. ..||.||.++.. .++..+++.+.++++.|+| .||.+++.+.++
T Consensus 44 pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v~Cpn--~GC~~~~~l~~l 121 (141)
T 3knv_A 44 PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPS--DGCTWKGTLKEY 121 (141)
T ss_dssp EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEEECCS--TTCCCEEEHHHH
T ss_pred cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcccccccCC--CCCCCEeEHHHH
Confidence 356799999999998863 379999987531 2567889999999999998 588888888888
Q ss_pred hh-HHhhCC
Q psy17006 281 PE-HEDACE 288 (446)
Q Consensus 281 ~~-He~~C~ 288 (446)
.. |+..|.
T Consensus 122 ~~~H~~~~~ 130 (141)
T 3knv_A 122 ESCHEGRCP 130 (141)
T ss_dssp HHHTTTCCH
T ss_pred HHHHHHHhH
Confidence 86 777664
No 57
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.99 E-value=3.3e-06 Score=64.96 Aligned_cols=59 Identities=19% Similarity=0.361 Sum_probs=51.2
Q ss_pred ccccccccCCCCeeeecCCChhhHhh-hCCCccccCCCCCCCCccccChhHHHHHHhhcCCCcceec
Q psy17006 92 VTFPCRYQMNGCNVVLLHTEKPEHED-ACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQ 157 (446)
Q Consensus 92 l~v~C~~~~~GC~~~~~~~~~~~H~~-~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~~~~c~ 157 (446)
..|.||+ ||+..+...++++|+. +|+++++.|++ |++.+.+.+|..|.+.|...++.|.
T Consensus 15 ~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~----C~~~~~~~~l~~H~~~Cp~~~v~C~ 74 (76)
T 2yuc_A 15 NVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF----CGCDFSGEAYESHEGMCPQESSGPS 74 (76)
T ss_dssp SCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS----SCCCCCHHHHHHTTTSCTTSSCCCS
T ss_pred cccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC----CCCccCHHHHHHHHhHCCCCccCCC
Confidence 5688886 8999999999999997 99999999995 9999999999999977665555553
No 58
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=1.4e-06 Score=69.76 Aligned_cols=58 Identities=16% Similarity=0.309 Sum_probs=46.7
Q ss_pred CCC-CCCCCCCccc-cHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCCCCccCC
Q psy17006 237 CCS-TCRGPLGNIR-NLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCP 295 (446)
Q Consensus 237 ~Cp-~Cr~~~~~~r-~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~~Cp 295 (446)
.|| .|...+.... ..|+ .+|++..++|+|+.+||+.++.|.+|.+||+.||-+.+.|.
T Consensus 39 ~CP~~Cga~i~rckL~EH~-~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~ 98 (100)
T 2yre_A 39 GCPLVCGAVFHSCKADEHR-LLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS 98 (100)
T ss_dssp ECTTCCSCEEEHHHHHHHH-HHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred eCCcccCCeeehhhHHHHH-hhcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence 488 6876333222 2344 56999999999999999999999999999999999887765
No 59
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.89 E-value=3.3e-06 Score=63.51 Aligned_cols=49 Identities=18% Similarity=0.409 Sum_probs=37.5
Q ss_pred cCCCCceecccccCcCcC--ccccccccceeccCcccCC----CCCCCCCCCCcc
Q psy17006 31 TDLASLFECPVCFDYVLP--PIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGN 79 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~--Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~~ 79 (446)
++.++...|+||.+.+.. ++....|||.||..|+.++ ..||+||.++..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 445567889999998853 2334457999999999864 589999998753
No 60
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.87 E-value=3.9e-06 Score=79.21 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=47.9
Q ss_pred CCCceecccccCcCcCccccccccceeccCcccCC------CCCCC--CCCCCcc---ccchHHHHHhhhc
Q psy17006 33 LASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL------SCCST--CRGPLGN---IRNLAMEKVAETV 92 (446)
Q Consensus 33 l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~------~~CP~--Cr~~~~~---~~~~~~e~~~~~l 92 (446)
....+.||||++++.+||..-.|||.||+.|+.+. ..||+ |++.+.. .+|..+.+++..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence 45779999999999999943357999999999863 26999 9997752 4788888877654
No 61
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.86 E-value=4.7e-06 Score=59.51 Aligned_cols=43 Identities=26% Similarity=0.678 Sum_probs=34.5
Q ss_pred CceecccccCcCcC----ccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLP----PIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~----Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
+...|+||.+.+.+ ++ .-.|||.||..|+.++ ..||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAH-VLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEE-ECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeE-ecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999965 43 3456999999999875 68999998764
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=1.1e-05 Score=60.67 Aligned_cols=45 Identities=20% Similarity=0.501 Sum_probs=38.6
Q ss_pred CCceecccccCcCcCccccccccce-eccCcccCCCCCCCCCCCCcc
Q psy17006 34 ASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCSTCRGPLGN 79 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~CP~Cr~~~~~ 79 (446)
.+...|+||.+...++++ -.|||. +|..|......||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVL-LPCRHTCLCDGCVKYFQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEE-TTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEE-ECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence 356789999999999973 345999 999999999999999998863
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.76 E-value=2.5e-06 Score=66.37 Aligned_cols=47 Identities=28% Similarity=0.756 Sum_probs=40.3
Q ss_pred cCCCCceecccccCcCcCccccccccce-eccCcccCCCCCCCCCCCCc
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCSTCRGPLG 78 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~CP~Cr~~~~ 78 (446)
+++.+...|+||.+...+|++ -.|||. ||..|..++..||+||.++.
T Consensus 13 ~~l~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~~~CP~Cr~~i~ 60 (79)
T 2yho_A 13 RKLKEAMLCMVCCEEEINSTF-CPCGHTVCCESCAAQLQSCPVCRSRVE 60 (79)
T ss_dssp HHHHHHTBCTTTSSSBCCEEE-ETTCBCCBCHHHHTTCSBCTTTCCBCC
T ss_pred HcCCCCCEeEEeCcccCcEEE-ECCCCHHHHHHHHHhcCcCCCCCchhh
Confidence 345567789999999999984 356999 99999999999999999886
No 64
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.71 E-value=7.3e-06 Score=65.33 Aligned_cols=48 Identities=17% Similarity=0.425 Sum_probs=37.8
Q ss_pred ccCCCCceecccccCcCcC---ccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 30 STDLASLFECPVCFDYVLP---PIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~---Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
.....+...|+||.+.+.. ++ ...|||.||..|+.++ ..||+||.++.
T Consensus 34 ~~~~~~~~~C~IC~~~~~~~~~~~-~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 34 HGAVGQEMCCPICCSEYVKGDVAT-ELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CSSSSSCSEETTTTEECCTTCEEE-EETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred ccccCCCCCCcccChhhcCCCcEE-ecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3445678899999998876 43 4457999999999864 58999998774
No 65
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.65 E-value=5.2e-06 Score=70.35 Aligned_cols=44 Identities=30% Similarity=0.780 Sum_probs=37.1
Q ss_pred CCceecccccCcCcCc-------cccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 34 ASLFECPVCFDYVLPP-------IIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~P-------v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
.+.+.|+||++.+.+| + ...|||.||..|+.++ ..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEE-EETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeE-ecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 3568999999999988 5 4567999999999764 58999999875
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.50 E-value=2.1e-05 Score=78.00 Aligned_cols=47 Identities=36% Similarity=0.814 Sum_probs=40.9
Q ss_pred CCCCceecccccCcCcCccccccccce-eccCcccCCCCCCCCCCCCcc
Q psy17006 32 DLASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCSTCRGPLGN 79 (446)
Q Consensus 32 ~l~~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~CP~Cr~~~~~ 79 (446)
.+.+.+.|+||.+.+.+|++ -.|||. ||..|+.++..||+||.++..
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~-lpCgH~~fC~~C~~~~~~CP~CR~~i~~ 338 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVF-IPCGHLVVCQECAPSLRKCPICRGIIKG 338 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEE-ETTCCEEECTTTGGGCSBCTTTCCBCCE
T ss_pred hCcCCCCCCccCCcCCceEE-cCCCChhHhHHHHhcCCcCCCCCCCccC
Confidence 44577899999999999984 366999 999999999999999998863
No 67
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.40 E-value=1.7e-05 Score=58.78 Aligned_cols=45 Identities=27% Similarity=0.603 Sum_probs=36.5
Q ss_pred CceecccccCcCcCccc-cccccce-eccCcccCCC----CCCCCCCCCcc
Q psy17006 35 SLFECPVCFDYVLPPII-QCQSGHL-VCSNCRPKLS----CCSTCRGPLGN 79 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~----~CP~Cr~~~~~ 79 (446)
....|+||.+-..++++ .-.|||. +|..|..++. .||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 45679999999999863 2356998 9999998764 89999998863
No 68
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.37 E-value=2.8e-05 Score=64.42 Aligned_cols=44 Identities=16% Similarity=0.370 Sum_probs=33.9
Q ss_pred CceecccccCcCcCccc-----------------cccccceeccCcccCC---------CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLPPII-----------------QCQSGHLVCSNCRPKL---------SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~-----------------qC~~GH~~C~~C~~~~---------~~CP~Cr~~~~ 78 (446)
+...|+||++.|..|.. .-.|||.||..|+.++ ..||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 34589999999976530 2346999999998753 37999999775
No 69
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.27 E-value=3e-05 Score=65.55 Aligned_cols=45 Identities=29% Similarity=0.786 Sum_probs=37.4
Q ss_pred CCceecccccCcCcCcc------ccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 34 ASLFECPVCFDYVLPPI------IQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv------~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
++.+.|+||.+.+.+|+ ....|||.||..|+.++ ..||+||.++.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 46788999999998761 25677999999999864 68999999886
No 70
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.27 E-value=2.8e-05 Score=57.70 Aligned_cols=45 Identities=31% Similarity=0.668 Sum_probs=36.6
Q ss_pred CceecccccCcCcCcccc-ccccce-eccCcccCC----CCCCCCCCCCcc
Q psy17006 35 SLFECPVCFDYVLPPIIQ-CQSGHL-VCSNCRPKL----SCCSTCRGPLGN 79 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~q-C~~GH~-~C~~C~~~~----~~CP~Cr~~~~~ 79 (446)
+...|+||.+...++++. -.|||. +|..|..++ ..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 556899999999999742 256999 899999875 469999998863
No 71
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.24 E-value=8.1e-05 Score=74.49 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=37.8
Q ss_pred CCCceecccccCcCcCccccccccceeccCcccC-----CCCCCCCCCCCcc
Q psy17006 33 LASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----LSCCSTCRGPLGN 79 (446)
Q Consensus 33 l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~-----~~~CP~Cr~~~~~ 79 (446)
......|+||.+.+.+|+ ...|||.||..|+.. ...||.||.++..
T Consensus 329 ~~~~~~C~ICle~~~~pv-~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVK-IEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TTSSSBCTTTSSSBCCEE-EETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred cCCCCCCCccCcCCCCeE-EeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 344579999999999997 446799999999974 3689999998763
No 72
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.00012 Score=56.79 Aligned_cols=44 Identities=16% Similarity=0.365 Sum_probs=33.7
Q ss_pred CceecccccCcCcCc--------------cccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLPP--------------IIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~P--------------v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
+.-.|+||.+.+.++ +....|||.|+..|+.++ ..||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 345699999998763 323347999999999863 58999999875
No 73
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.11 E-value=5.3e-05 Score=60.58 Aligned_cols=42 Identities=17% Similarity=0.452 Sum_probs=33.3
Q ss_pred CceecccccCcCcCccc-c-ccccceeccCcccCC------------CCCCC--CCCC
Q psy17006 35 SLFECPVCFDYVLPPII-Q-CQSGHLVCSNCRPKL------------SCCST--CRGP 76 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~-q-C~~GH~~C~~C~~~~------------~~CP~--Cr~~ 76 (446)
+.+.|+||.+.+..|.. . -.|||.||..|+... ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46889999999988863 2 146999999998752 26999 9987
No 74
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.98 E-value=0.00014 Score=53.41 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=36.3
Q ss_pred ceecccccCcCcCccccc-cccceeccCcccCC----CCCCCCCCCCc
Q psy17006 36 LFECPVCFDYVLPPIIQC-QSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 36 ~l~C~iC~~~l~~Pv~qC-~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
.|.|||+++++.+|| .. .+||+|+..|+.++ ..||+.++++.
T Consensus 3 ~~~CpIs~~~m~dPV-~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPV-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEE-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCCE-EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 488999999999998 44 67999999999975 57999999885
No 75
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.42 E-value=0.00034 Score=53.30 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=24.4
Q ss_pred ChhhHhh-hCCCccccCCCCCCCCccccChhHHHHHHhhcCCCcceecCccEEEE
Q psy17006 111 EKPEHED-ACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHKTITTLQGEDIVFL 164 (446)
Q Consensus 111 ~~~~H~~-~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~~~~~c~~c~~~f~ 164 (446)
+|..|+. .|+++++.|+ .|+....+.+|..|...+-.+...|+.|+..|.
T Consensus 4 ~L~~H~~~~c~~r~~~C~----~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~~ 54 (75)
T 2d9k_A 4 GSSGHEETECPLRLAVCQ----HCDLELSILKLKEHEDYCGARTELCGNCGRNVL 54 (75)
T ss_dssp CCSCCCCCCCCCCCEECS----SSCCEECHHHHHHHHHHHHHCEEECSSSCCEEE
T ss_pred HHHhhCcccCCCcccCCc----ccChHhhHHHHHHHHhHcCCCceEcccCCCcCc
Confidence 4445553 4555555554 255555555555555333334455555554433
No 76
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.41 E-value=0.0009 Score=50.92 Aligned_cols=52 Identities=23% Similarity=0.377 Sum_probs=45.9
Q ss_pred ccccccccCCCCeeeecCCChhhHhhhCCCccccCCCCCCCCccccChhHHHHHHhhcCC
Q psy17006 92 VTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHK 151 (446)
Q Consensus 92 l~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~ 151 (446)
..+.|++ |...+...+|..|+..|+.+++.|+. |+..+.+.+|..|++.+..
T Consensus 16 r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~----C~~~~~~~~l~~H~~~c~~ 67 (75)
T 2d9k_A 16 RLAVCQH----CDLELSILKLKEHEDYCGARTELCGN----CGRNVLVKDLKTHPEVCGR 67 (75)
T ss_dssp CCEECSS----SCCEECHHHHHHHHHHHHHCEEECSS----SCCEEETTGGGTHHHHBTT
T ss_pred cccCCcc----cChHhhHHHHHHHHhHcCCCceEccc----CCCcCcHHHHHHHHHHccC
Confidence 4567775 99999999999999999999999994 9999999999999987653
No 77
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.36 E-value=0.00079 Score=55.09 Aligned_cols=43 Identities=12% Similarity=0.306 Sum_probs=33.9
Q ss_pred ceecccccCcCcCc-----------------cccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 36 LFECPVCFDYVLPP-----------------IIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 36 ~l~C~iC~~~l~~P-----------------v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
.-.|+||.+.+..+ +..-.|||.|+..|+.++ ..||+||.++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 45799999999865 222357999999999873 58999999864
No 78
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.13 E-value=0.0009 Score=55.73 Aligned_cols=42 Identities=12% Similarity=0.299 Sum_probs=0.0
Q ss_pred eecccccCcCcCc-----------------cccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 37 FECPVCFDYVLPP-----------------IIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 37 l~C~iC~~~l~~P-----------------v~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
-.|+||.+.+..| +....|||.|+..|+.++ ..||+||.++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4799999999764 212357999999999874 58999999864
No 79
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.30 E-value=0.003 Score=50.43 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=51.8
Q ss_pred ecccccCcCcCccccccccceeccCcccC-----CCCCCCCCCCCccccchHHHHHhhhccccccccCCCCeeeecCCCh
Q psy17006 38 ECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----LSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEK 112 (446)
Q Consensus 38 ~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~-----~~~CP~Cr~~~~~~~~~~~e~~~~~l~v~C~~~~~GC~~~~~~~~~ 112 (446)
-|++|..++..=...=+|.|.||..|... ...||.|+.++..+.... .+-.+-|+. ..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~-----~~~if~C~~-~~----------- 65 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT-----RGSLFMCSI-VQ----------- 65 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE-----GGGCCCCCC-CC-----------
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec-----cCCEEECCC-CC-----------
Confidence 48999988865322224599999999953 468999999987543321 133455662 12
Q ss_pred hhHhhhCCCccccCCCCCCCCccc-cChhHHHHHHhhcCCC
Q psy17006 113 PEHEDACEYRPYHCPCPGASCKWS-GALDQVMGHLNQSHKT 152 (446)
Q Consensus 113 ~~H~~~C~~~~v~Cp~~~~~C~~~-~~~~~l~~H~~~~h~~ 152 (446)
+|... ...++|..|....|.+
T Consensus 66 -------------------~CkrtyLs~rdlqaHI~~~H~~ 87 (101)
T 3vk6_A 66 -------------------GCKRTYLSQRDLQAHINHRHMR 87 (101)
T ss_dssp -------------------CCCCCCSSHHHHHHHHHHHTTT
T ss_pred -------------------CHHHHhcCHHHHHHHHHHHhhh
Confidence 44444 2557888888888864
No 80
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=93.18 E-value=0.058 Score=47.65 Aligned_cols=53 Identities=21% Similarity=0.425 Sum_probs=32.4
Q ss_pred hcccCcccCCCCCeEeecC-CCchhHHhh-CCCCCccCCCCCCCcccc-cChhHHHHHhhhccC
Q psy17006 259 TVTFPCRYQMNGCNVVLLH-TEKPEHEDA-CEYRPYHCPCPGASCKWS-GALDQVMGHLNQSHK 319 (446)
Q Consensus 259 ~~~~~C~~~~~GC~~~~~~-~~l~~He~~-C~~~~~~Cp~~~~~C~~~-g~~~~l~~H~~~~H~ 319 (446)
.-++.|+. |+..+.. ..|..|+.. -.-.++.|+. |+.. .....|..|++..+.
T Consensus 131 ~~~~~C~~----C~~~f~~~~~L~~H~~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 186 (190)
T 2i13_A 131 EKPYKCPE----CGKSFSREDNLHTHQRTHTGEKPYKCPE----CGKSFSRRDALNVHQRTHTG 186 (190)
T ss_dssp CCCEECTT----TCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHTTC--
T ss_pred CCCeECCC----CCcccCCHHHHHHHHHhcCCCCCeECCC----CCCccCCHHHHHHHHHhcCC
Confidence 34455654 6665553 456677643 3456788884 8777 456689999876543
No 81
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=92.76 E-value=0.46 Score=40.00 Aligned_cols=74 Identities=20% Similarity=0.551 Sum_probs=46.8
Q ss_pred CCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHH-hh-CCCCCccCCCCCCCcccc-cChhHHHHHh
Q psy17006 241 CRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHE-DA-CEYRPYHCPCPGASCKWS-GALDQVMGHL 314 (446)
Q Consensus 241 Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He-~~-C~~~~~~Cp~~~~~C~~~-g~~~~l~~H~ 314 (446)
|...+..... .|+..-...-++.|+. .||+..+. ...|..|+ .. -.-.++.|+.++ |+.. .....|..|+
T Consensus 75 C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~--C~~~f~~~~~L~~H~ 150 (155)
T 2gli_A 75 CRKSYSRLENLKTHLRSHTGEKPYMCEH--EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPG--CTKRYTDPSSLRKHV 150 (155)
T ss_dssp CCCCCSSHHHHHHHHHHTTTCCCEECCS--TTCCCEESSSSTTHHHHHHTTCSCCCEECCSTT--TCCEESSHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHcCCCCCeeCCC--CCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCC--CccccCCHHHHHHHH
Confidence 5555544322 2333223344566764 36888775 67888997 43 446788998653 8777 4566899999
Q ss_pred hhcc
Q psy17006 315 NQSH 318 (446)
Q Consensus 315 ~~~H 318 (446)
+..|
T Consensus 151 ~~hh 154 (155)
T 2gli_A 151 KTVH 154 (155)
T ss_dssp HHSC
T ss_pred Hhhc
Confidence 8776
No 82
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.68 E-value=0.032 Score=41.44 Aligned_cols=27 Identities=22% Similarity=0.584 Sum_probs=24.4
Q ss_pred eccCcc-cccCcccCCCCCCCCCCCCCc
Q psy17006 221 CQSGHL-VCSNCRPKLSCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~-~C~~C~~~~~~Cp~Cr~~~~~ 247 (446)
=|.||. +|..|..++..||.||.++..
T Consensus 31 ~pCgH~~~C~~C~~~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 31 LPCRHTCLCDGCVKYFQQCPMCRQFVQE 58 (68)
T ss_dssp TTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred ECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence 378999 999999999999999999875
No 83
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=92.25 E-value=0.035 Score=41.81 Aligned_cols=26 Identities=27% Similarity=0.705 Sum_probs=24.1
Q ss_pred ccCcc-cccCcccCCCCCCCCCCCCCc
Q psy17006 222 QSGHL-VCSNCRPKLSCCSTCRGPLGN 247 (446)
Q Consensus 222 ~~gh~-~C~~C~~~~~~Cp~Cr~~~~~ 247 (446)
+.||. +|..|..++..||.||.++..
T Consensus 41 pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAVDKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTCSBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcCccCCCcCcCccC
Confidence 78999 999999999999999998875
No 84
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.18 E-value=0.1 Score=39.42 Aligned_cols=44 Identities=18% Similarity=0.483 Sum_probs=34.5
Q ss_pred CCceecccccCcCcCccccc-cccceeccCcccCC------CCCCCCCCCCc
Q psy17006 34 ASLFECPVCFDYVLPPIIQC-QSGHLVCSNCRPKL------SCCSTCRGPLG 78 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv~qC-~~GH~~C~~C~~~~------~~CP~Cr~~~~ 78 (446)
+..-.|+||.+++.+-+ .| .|+|.|=..|+.++ ..||.||.++.
T Consensus 13 ~~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 34567999999998544 66 57999888998752 58999999875
No 85
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.06 E-value=0.027 Score=42.55 Aligned_cols=26 Identities=27% Similarity=0.705 Sum_probs=23.8
Q ss_pred ccCcc-cccCcccCCCCCCCCCCCCCc
Q psy17006 222 QSGHL-VCSNCRPKLSCCSTCRGPLGN 247 (446)
Q Consensus 222 ~~gh~-~C~~C~~~~~~Cp~Cr~~~~~ 247 (446)
+.||. +|..|..++..||.||.++..
T Consensus 42 pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 42 PCGHLVTCKQCAEAVDKCPMCYTVITF 68 (75)
T ss_dssp SSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred cCCCHHHHHHHhhCCCCCccCCceecC
Confidence 77999 999999999999999998875
No 86
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=91.94 E-value=0.022 Score=43.63 Aligned_cols=30 Identities=30% Similarity=0.834 Sum_probs=24.6
Q ss_pred eeeeccCcccccCcccCC-----CCCCCCCCCCCc
Q psy17006 218 FTYCQSGHLVCSNCRPKL-----SCCSTCRGPLGN 247 (446)
Q Consensus 218 ~~~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~ 247 (446)
+..|+.||.+|..|..++ ..||.||.++..
T Consensus 28 ~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 28 FFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 455789999999998764 489999998874
No 87
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=91.55 E-value=0.047 Score=41.79 Aligned_cols=26 Identities=31% Similarity=0.905 Sum_probs=24.0
Q ss_pred ccCcc-cccCcccCCCCCCCCCCCCCc
Q psy17006 222 QSGHL-VCSNCRPKLSCCSTCRGPLGN 247 (446)
Q Consensus 222 ~~gh~-~C~~C~~~~~~Cp~Cr~~~~~ 247 (446)
|.||. +|..|..++..||.||.++..
T Consensus 35 pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 35 PCGHTVCCESCAAQLQSCPVCRSRVEH 61 (79)
T ss_dssp TTCBCCBCHHHHTTCSBCTTTCCBCCE
T ss_pred CCCCHHHHHHHHHhcCcCCCCCchhhC
Confidence 78999 999999999999999998874
No 88
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.39 E-value=0.095 Score=40.24 Aligned_cols=44 Identities=25% Similarity=0.550 Sum_probs=32.8
Q ss_pred CceecccccCcCc--Ccc-ccccc---cceeccCcccCC------CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVL--PPI-IQCQS---GHLVCSNCRPKL------SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~--~Pv-~qC~~---GH~~C~~C~~~~------~~CP~Cr~~~~ 78 (446)
+...|.||++-+. .|+ ..|.| +|.|-..|+.++ ..||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 4467999997663 454 24544 499999999875 37999999875
No 89
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.08 E-value=0.12 Score=36.44 Aligned_cols=26 Identities=27% Similarity=0.586 Sum_probs=22.2
Q ss_pred ccCcccccCcccCC-CCCCCCCCCCCc
Q psy17006 222 QSGHLVCSNCRPKL-SCCSTCRGPLGN 247 (446)
Q Consensus 222 ~~gh~~C~~C~~~~-~~Cp~Cr~~~~~ 247 (446)
+.||++|..|..+. ..||.||.++..
T Consensus 23 ~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccCCCCCCcCCcEeec
Confidence 67999999999875 589999998764
No 90
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=90.56 E-value=0.048 Score=43.35 Aligned_cols=39 Identities=26% Similarity=0.535 Sum_probs=29.7
Q ss_pred ccCcccccCcccCC----CCCCCCCCCCCc---cccHHHHHHHhhc
Q psy17006 222 QSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETV 260 (446)
Q Consensus 222 ~~gh~~C~~C~~~~----~~Cp~Cr~~~~~---~r~~~~e~~c~~~ 260 (446)
++||++|..|..+. ..||.||.++.. .+|..++++...+
T Consensus 40 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 40 QCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSL 85 (99)
T ss_dssp TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHH
Confidence 68999999998752 589999998873 3567776665544
No 91
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=90.20 E-value=0.077 Score=51.87 Aligned_cols=45 Identities=24% Similarity=0.690 Sum_probs=36.3
Q ss_pred CCceecccccCcCcC----ccccc---cccceeccCcccCC---------------CCCCCCCCCCc
Q psy17006 34 ASLFECPVCFDYVLP----PIIQC---QSGHLVCSNCRPKL---------------SCCSTCRGPLG 78 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~----Pv~qC---~~GH~~C~~C~~~~---------------~~CP~Cr~~~~ 78 (446)
+..-+|+||...+.+ |-..| .|||.|=+.|+.++ ..||.||.+++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 466789999999976 65556 37999999999763 36999999886
No 92
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.01 E-value=0.18 Score=41.37 Aligned_cols=38 Identities=24% Similarity=0.494 Sum_probs=28.6
Q ss_pred eccCcccccCcccCC--CCCCCCCCCCCc---cccHHHHHHHh
Q psy17006 221 CQSGHLVCSNCRPKL--SCCSTCRGPLGN---IRNLAMEKVAE 258 (446)
Q Consensus 221 C~~gh~~C~~C~~~~--~~Cp~Cr~~~~~---~r~~~~e~~c~ 258 (446)
.++||++|..|..+. ..||.||.++.. ..|..+.++..
T Consensus 39 ~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~ 81 (117)
T 1jm7_B 39 GGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQ 81 (117)
T ss_dssp CSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHH
Confidence 378999999999885 589999998853 34666655444
No 93
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=90.01 E-value=0.068 Score=41.73 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=32.3
Q ss_pred ec-cCcccccCcccCC------CCCCCCCCCCC----ccccHHHHHHHhhcccCcc
Q psy17006 221 CQ-SGHLVCSNCRPKL------SCCSTCRGPLG----NIRNLAMEKVAETVTFPCR 265 (446)
Q Consensus 221 C~-~gh~~C~~C~~~~------~~Cp~Cr~~~~----~~r~~~~e~~c~~~~~~C~ 265 (446)
-+ +||++|..|..+. ..||.||.++. ...|..++++...+.-.-.
T Consensus 29 ~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 29 IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 36 7999999998652 48999999973 3456777776666554433
No 94
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.49 E-value=0.092 Score=41.85 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=26.2
Q ss_pred CceecccccC-cCcCccccc-cccceeccCcccC
Q psy17006 35 SLFECPVCFD-YVLPPIIQC-QSGHLVCSNCRPK 66 (446)
Q Consensus 35 ~~l~C~iC~~-~l~~Pv~qC-~~GH~~C~~C~~~ 66 (446)
+.+.|+||.+ +..+|+..| .|||.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 4588999996 578888665 4699999999985
No 95
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=89.07 E-value=0.072 Score=42.45 Aligned_cols=64 Identities=22% Similarity=0.496 Sum_probs=42.8
Q ss_pred ccCcccccCccc-----CCCCCCCCCCCCCccccHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCCCCccCCC
Q psy17006 222 QSGHLVCSNCRP-----KLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPC 296 (446)
Q Consensus 222 ~~gh~~C~~C~~-----~~~~Cp~Cr~~~~~~r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~~~Cp~ 296 (446)
|..|++|-+|.. +...||.|+.++..+....+ .-.+-|+. .
T Consensus 19 PCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~-----~~if~C~~-----------------------------~ 64 (101)
T 3vk6_A 19 PCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR-----GSLFMCSI-----------------------------V 64 (101)
T ss_dssp TTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG-----GGCCCCCC-----------------------------C
T ss_pred cccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEecc-----CCEEECCC-----------------------------C
Confidence 789999999984 34689999999987433211 23344442 1
Q ss_pred CCCCcccc-cChhHHHHHhhhccCcc
Q psy17006 297 PGASCKWS-GALDQVMGHLNQSHKTI 321 (446)
Q Consensus 297 ~~~~C~~~-g~~~~l~~H~~~~H~~~ 321 (446)
.+|+-. -+..+|+.|+...|...
T Consensus 65 --~~CkrtyLs~rdlqaHI~~~H~~~ 88 (101)
T 3vk6_A 65 --QGCKRTYLSQRDLQAHINHRHMRA 88 (101)
T ss_dssp --CCCCCCCSSHHHHHHHHHHHTTTS
T ss_pred --CCHHHHhcCHHHHHHHHHHHhhhc
Confidence 135444 46778999999998753
No 96
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=88.60 E-value=0.17 Score=41.80 Aligned_cols=39 Identities=28% Similarity=0.556 Sum_probs=28.8
Q ss_pred eccCcccccCcccCC-----CCCCCCCCCCCc----cccHHHHHHHhh
Q psy17006 221 CQSGHLVCSNCRPKL-----SCCSTCRGPLGN----IRNLAMEKVAET 259 (446)
Q Consensus 221 C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~----~r~~~~e~~c~~ 259 (446)
-++||++|..|..+. ..||.||.++.. ..|..+.++...
T Consensus 68 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~ 115 (124)
T 3fl2_A 68 TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQ 115 (124)
T ss_dssp CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHH
T ss_pred eeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 378999999998652 489999999865 346666655543
No 97
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=88.39 E-value=0.71 Score=40.40 Aligned_cols=47 Identities=23% Similarity=0.517 Sum_probs=26.9
Q ss_pred CCeEeecC-CCchhHHhhCCCCCccCCCCCCCcccccC-hhHHHHHhhhccC
Q psy17006 270 GCNVVLLH-TEKPEHEDACEYRPYHCPCPGASCKWSGA-LDQVMGHLNQSHK 319 (446)
Q Consensus 270 GC~~~~~~-~~l~~He~~C~~~~~~Cp~~~~~C~~~g~-~~~l~~H~~~~H~ 319 (446)
+|+..+.. ..|..|+..- ..+.|+... .|+.... ...|..|++..|.
T Consensus 141 ~C~k~F~~~~~L~~H~~~H--~~~~C~~~~-~C~~~f~~~~~l~~H~~~h~~ 189 (190)
T 1tf6_A 141 GCDKRFSLPSRLKRHEKVH--AGYPCKKDD-SCSFVGKTWTLYLKHVAECHQ 189 (190)
T ss_dssp SCCCBCSSHHHHHHHHTSS--CSCCCCSTT-TCCCCCSCHHHHHHHHTTCC-
T ss_pred CCCchhcCHHHHHHHHHHh--CCCcCCCCC-cCCCccccHHHHHHHHHhhcC
Confidence 45554442 4566676532 226676432 3776654 5679999887664
No 98
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=88.32 E-value=0.07 Score=38.78 Aligned_cols=27 Identities=33% Similarity=0.795 Sum_probs=22.4
Q ss_pred eccCcccccCcccCC-----CCCCCCCCCCCc
Q psy17006 221 CQSGHLVCSNCRPKL-----SCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~ 247 (446)
-+.||++|..|..+. ..||.||.++..
T Consensus 24 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 24 NVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 378999999998764 479999998864
No 99
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=88.21 E-value=0.14 Score=38.46 Aligned_cols=27 Identities=26% Similarity=0.570 Sum_probs=22.2
Q ss_pred eccCcccccCcccC-----------CCCCCCCCCCCCc
Q psy17006 221 CQSGHLVCSNCRPK-----------LSCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~~C~~C~~~-----------~~~Cp~Cr~~~~~ 247 (446)
-+.||++|..|..+ ...||.||.++..
T Consensus 28 l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 28 LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 47899999999875 2479999998864
No 100
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=87.55 E-value=0.042 Score=40.07 Aligned_cols=26 Identities=31% Similarity=0.885 Sum_probs=22.5
Q ss_pred ccCcc-cccCcccCCC----CCCCCCCCCCc
Q psy17006 222 QSGHL-VCSNCRPKLS----CCSTCRGPLGN 247 (446)
Q Consensus 222 ~~gh~-~C~~C~~~~~----~Cp~Cr~~~~~ 247 (446)
|.||. +|..|..++. .||.||.++..
T Consensus 26 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 26 RTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp TEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 78998 8999998864 89999999864
No 101
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.21 E-value=0.3 Score=35.00 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=25.4
Q ss_pred hCCCccccCCCCCCCCccccChhHHHHHHhhcCC-Ccceec-CccEEEE
Q psy17006 118 ACEYRPYHCPCPGASCKWSGALDQVMGHLNQSHK-TITTLQ-GEDIVFL 164 (446)
Q Consensus 118 ~C~~~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h~-~~~~c~-~c~~~f~ 164 (446)
.|+.+++.|+ .|+......+|..|+.. .. ....|+ .|+..|.
T Consensus 5 ~C~~~~~~C~----~C~k~f~~~~L~~H~~~-~~~~p~~C~~~C~k~f~ 48 (66)
T 2eod_A 5 SSGKRTQPCT----YCTKEFVFDTIQSHQYQ-CPRLPVACPNQCGVGTV 48 (66)
T ss_dssp CCCCCEEECS----SSCCEEEHHHHHHHHHH-CSSSEEECTTCCSCCEE
T ss_pred cCCCCCeecc----ccCCccCHHHHHHHHHH-cCCcCccCCcccCcccc
Confidence 5667777776 36665556667777666 32 445666 6665443
No 102
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=86.92 E-value=0.85 Score=36.52 Aligned_cols=104 Identities=23% Similarity=0.365 Sum_probs=47.1
Q ss_pred CceecccccCcCcCcc-ccccccceeccCcccCCCCCCCCCCCCccccchHHHHH-----hhhccccccccCCCCeeeec
Q psy17006 35 SLFECPVCFDYVLPPI-IQCQSGHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKV-----AETVTFPCRYQMNGCNVVLL 108 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv-~qC~~GH~~C~~C~~~~~~CP~Cr~~~~~~~~~~~e~~-----~~~l~v~C~~~~~GC~~~~~ 108 (446)
..+.|++|...+.... +. -|.- ..-..+.-.|+.|...+....++..-.. .....+.|+. |+..+.
T Consensus 6 ~~~~C~~C~~~f~~~~~l~---~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f~ 77 (124)
T 2dlq_A 6 SGVECPTCHKKFLSKYYLK---VHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETFR 77 (124)
T ss_dssp SSCCCTTTCCCCSSHHHHH---HHHH-HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEES
T ss_pred CCCCCCCCCCcCCCHHHHH---HHHH-hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCccC
Confidence 3467777777766542 11 1210 0001223467777665543222111111 1223445554 655544
Q ss_pred C-CChhhHhhh-CCCccccCCCCCCCCcccc-ChhHHHHHHhhcC
Q psy17006 109 H-TEKPEHEDA-CEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSH 150 (446)
Q Consensus 109 ~-~~~~~H~~~-C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h 150 (446)
. ..|..|+.. -.-+++.|+ .|+... ...+|..|+...|
T Consensus 78 ~~~~l~~H~~~h~~~~~~~C~----~C~~~f~~~~~l~~H~~~~H 118 (124)
T 2dlq_A 78 RRMELRLHMVSHTGEMPYKCS----SCSQQFMQKKDLQSHMIKLH 118 (124)
T ss_dssp SHHHHHHHHHHHSSSCSEECS----SSCCEESSHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHcCCCCCccCC----CccchhCCHHHHHHHHHHHC
Confidence 3 445556532 223455565 355553 3355666665555
No 103
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=86.54 E-value=0.15 Score=41.10 Aligned_cols=38 Identities=13% Similarity=0.429 Sum_probs=28.3
Q ss_pred ccCcccccCcccCC----CCCCCCCCCCCcc-------ccHHHHHHHhh
Q psy17006 222 QSGHLVCSNCRPKL----SCCSTCRGPLGNI-------RNLAMEKVAET 259 (446)
Q Consensus 222 ~~gh~~C~~C~~~~----~~Cp~Cr~~~~~~-------r~~~~e~~c~~ 259 (446)
++||++|..|..+. ..||.||.++... .|..+.++...
T Consensus 33 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~ 81 (108)
T 2ckl_A 33 ECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYK 81 (108)
T ss_dssp TTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHH
Confidence 78999999998763 5899999988742 35555555544
No 104
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=86.50 E-value=0.14 Score=35.51 Aligned_cols=25 Identities=32% Similarity=0.810 Sum_probs=21.2
Q ss_pred ccCcccccCcccCC----CCCCCCCCCCC
Q psy17006 222 QSGHLVCSNCRPKL----SCCSTCRGPLG 246 (446)
Q Consensus 222 ~~gh~~C~~C~~~~----~~Cp~Cr~~~~ 246 (446)
+.||++|..|..+. ..||.||.++.
T Consensus 26 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 26 PCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp TTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 56999999999863 58999998875
No 105
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=86.39 E-value=0.13 Score=43.49 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=22.9
Q ss_pred eeccCcccccCcccC----CCCCCCCCCCCCc
Q psy17006 220 YCQSGHLVCSNCRPK----LSCCSTCRGPLGN 247 (446)
Q Consensus 220 ~C~~gh~~C~~C~~~----~~~Cp~Cr~~~~~ 247 (446)
.-++||.+|..|..+ ...||.||.++..
T Consensus 68 ~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 68 TLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp EETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 347899999999775 2589999999864
No 106
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=86.35 E-value=0.17 Score=43.72 Aligned_cols=40 Identities=25% Similarity=0.537 Sum_probs=30.5
Q ss_pred eccCcccccCcccCC-----CCCCCCCCCCCcc----ccHHHHHHHhhc
Q psy17006 221 CQSGHLVCSNCRPKL-----SCCSTCRGPLGNI----RNLAMEKVAETV 260 (446)
Q Consensus 221 C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~~----r~~~~e~~c~~~ 260 (446)
-++||++|..|..+. ..||.||.++... .|..+.+++..+
T Consensus 94 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~ 142 (150)
T 1z6u_A 94 TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLF 142 (150)
T ss_dssp CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 478999999998763 3799999998753 567777666544
No 107
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=85.94 E-value=0.12 Score=41.29 Aligned_cols=27 Identities=30% Similarity=0.711 Sum_probs=22.3
Q ss_pred eccCcccccCcccCC-----CCCCCCCCCCCc
Q psy17006 221 CQSGHLVCSNCRPKL-----SCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~ 247 (446)
=++||++|..|..+. ..||.||.++..
T Consensus 39 ~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 39 PHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 367999999998762 489999999863
No 108
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.71 E-value=0.12 Score=37.65 Aligned_cols=28 Identities=32% Similarity=0.819 Sum_probs=22.8
Q ss_pred eeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006 220 YCQSGHLVCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 220 ~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
.-+.||++|..|..+. ..||.||.++..
T Consensus 37 ~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 37 STECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp ECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred eCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3467999999999763 589999998763
No 109
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.66 E-value=0.12 Score=38.34 Aligned_cols=26 Identities=23% Similarity=0.699 Sum_probs=21.7
Q ss_pred ccCcccccCcccCC-------CCCCCCCCCCCc
Q psy17006 222 QSGHLVCSNCRPKL-------SCCSTCRGPLGN 247 (446)
Q Consensus 222 ~~gh~~C~~C~~~~-------~~Cp~Cr~~~~~ 247 (446)
+.||++|..|..+. ..||.||.++..
T Consensus 37 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 37 DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 78999999998753 279999998764
No 110
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=85.64 E-value=0.17 Score=36.82 Aligned_cols=26 Identities=23% Similarity=0.611 Sum_probs=22.0
Q ss_pred ccCcccccCcccC----CCCCCCCCCCCCc
Q psy17006 222 QSGHLVCSNCRPK----LSCCSTCRGPLGN 247 (446)
Q Consensus 222 ~~gh~~C~~C~~~----~~~Cp~Cr~~~~~ 247 (446)
+.||.+|..|..+ ...||.||.++..
T Consensus 23 ~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 23 PCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp TTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 6799999999876 3689999998874
No 111
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.62 E-value=0.24 Score=37.56 Aligned_cols=27 Identities=30% Similarity=0.643 Sum_probs=22.3
Q ss_pred eccCcccccCcccC----------CCCCCCCCCCCCc
Q psy17006 221 CQSGHLVCSNCRPK----------LSCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~~C~~C~~~----------~~~Cp~Cr~~~~~ 247 (446)
-++||++|..|..+ ...||.||.++..
T Consensus 35 ~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 35 LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 37899999999865 3589999998873
No 112
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=85.49 E-value=0.23 Score=37.25 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=22.4
Q ss_pred eccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006 221 CQSGHLVCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
-+.||++|..|..+. ..||.||.++..
T Consensus 34 ~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 34 LPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp CTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred eCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 367999999999752 589999998864
No 113
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.38 E-value=0.15 Score=37.85 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=22.2
Q ss_pred ccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006 222 QSGHLVCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 222 ~~gh~~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
+.||++|..|..+. ..||.||.++..
T Consensus 33 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 33 ECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp SSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 68999999998763 589999998875
No 114
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=85.35 E-value=0.12 Score=37.96 Aligned_cols=29 Identities=31% Similarity=0.791 Sum_probs=23.6
Q ss_pred eeeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006 219 TYCQSGHLVCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 219 ~~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
..-+.||++|..|..+. ..||.||.++..
T Consensus 31 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 31 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred EeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 34578999999999763 589999998874
No 115
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=85.13 E-value=0.25 Score=34.23 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=20.2
Q ss_pred cCcccccCcccCC----CCCCCCCCCCC
Q psy17006 223 SGHLVCSNCRPKL----SCCSTCRGPLG 246 (446)
Q Consensus 223 ~gh~~C~~C~~~~----~~Cp~Cr~~~~ 246 (446)
.||.+|..|..+. ..||.||.++.
T Consensus 27 C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 27 CGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 7999999998763 58999998864
No 116
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=84.46 E-value=0.48 Score=36.23 Aligned_cols=76 Identities=18% Similarity=0.416 Sum_probs=51.5
Q ss_pred CCCCCCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHHhhCCC---CCccCCCCCCCccccc-ChhH
Q psy17006 237 CCSTCRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHEDACEY---RPYHCPCPGASCKWSG-ALDQ 309 (446)
Q Consensus 237 ~Cp~Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~C~~---~~~~Cp~~~~~C~~~g-~~~~ 309 (446)
.|+.|...+..... .|+..--..-++.|+. |...+. ...|..|+..-.- .++.|+. |+... ....
T Consensus 9 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~----C~~~f~~~~~ 80 (95)
T 2yt9_A 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPV----CGLRFKRKDRMSYHVRSHDGSVGKPYICQS----CGKGFSRPDH 80 (95)
T ss_dssp ECSSSCCEESSSHHHHHHHHHSCSSCSEECSS----SCCEESCHHHHHHHHHHHCCCCCSSBCCSS----SCCCBSSHHH
T ss_pred ECCCCCCccCChHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhcCCCCCceECCC----ccchhCCHHH
Confidence 57778777765443 3333222345577876 888776 4678889865433 7889985 87774 5668
Q ss_pred HHHHhhhccCc
Q psy17006 310 VMGHLNQSHKT 320 (446)
Q Consensus 310 l~~H~~~~H~~ 320 (446)
|..|++..|..
T Consensus 81 L~~H~~~~H~~ 91 (95)
T 2yt9_A 81 LNGHIKQVHSG 91 (95)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHHhcCC
Confidence 99999988864
No 117
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=84.45 E-value=0.13 Score=38.71 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=27.1
Q ss_pred eccCcccccCcccC-----CCCCCCCCCCCCc---cccHHHHHHHh
Q psy17006 221 CQSGHLVCSNCRPK-----LSCCSTCRGPLGN---IRNLAMEKVAE 258 (446)
Q Consensus 221 C~~gh~~C~~C~~~-----~~~Cp~Cr~~~~~---~r~~~~e~~c~ 258 (446)
-++||++|..|..+ ...||.||.++.. ..|..+.++..
T Consensus 24 ~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~ 69 (78)
T 1t1h_A 24 VSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIA 69 (78)
T ss_dssp ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHH
T ss_pred cCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHH
Confidence 47899999999865 2479999998863 23555554443
No 118
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=83.79 E-value=2.3 Score=35.55 Aligned_cols=113 Identities=13% Similarity=0.243 Sum_probs=65.6
Q ss_pred CCCCceecccccCcCcCcc-ccc-cc-ccee-----ccCcccCCCCCCCCCCCCccccchH--HHHHhhhccccccccCC
Q psy17006 32 DLASLFECPVCFDYVLPPI-IQC-QS-GHLV-----CSNCRPKLSCCSTCRGPLGNIRNLA--MEKVAETVTFPCRYQMN 101 (446)
Q Consensus 32 ~l~~~l~C~iC~~~l~~Pv-~qC-~~-GH~~-----C~~C~~~~~~CP~Cr~~~~~~~~~~--~e~~~~~l~v~C~~~~~ 101 (446)
+-...+.|++|...+.... +.- .. -|.. ...| ....|+.|...+....++. ++.-...-.+.|+. .
T Consensus 21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~--~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~ 96 (155)
T 2rpc_A 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC--YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF--P 96 (155)
T ss_dssp TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCC--CBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC--T
T ss_pred hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccc--cccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc--C
Confidence 3345689999999997653 110 00 0110 0001 0147999988775432211 12222345677874 3
Q ss_pred CCeeeecC-CChhhHhhhC-CCccccCCCCCCCCcccc-ChhHHHHHHhhcC
Q psy17006 102 GCNVVLLH-TEKPEHEDAC-EYRPYHCPCPGASCKWSG-ALDQVMGHLNQSH 150 (446)
Q Consensus 102 GC~~~~~~-~~~~~H~~~C-~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h 150 (446)
+|+..+.. ..|..|+..- .-+++.|+.+ +|+... ...+|..|++..+
T Consensus 97 ~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~ 146 (155)
T 2rpc_A 97 GCGKIFARSENLKIHKRTHTGEKPFKCEFE--GCDRRFANSSDRKKHMHVHT 146 (155)
T ss_dssp TTCCEESCHHHHHHHHTTTCSSCSBCCSST--TCCCCBSSHHHHHHSSTTTT
T ss_pred CCCCccCCHHHHHHHHHhhCCCCCccCCCC--CCCCccCCHHHHHHHHHHhc
Confidence 79887764 6778898532 3457888753 587775 4578889987543
No 119
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.63 E-value=0.47 Score=33.93 Aligned_cols=51 Identities=31% Similarity=0.660 Sum_probs=35.5
Q ss_pred cccccccCCCCeeeecCCChhhHhhhCCCccccCCCCCCCCcccc-ChhHHHHHHhhcC
Q psy17006 93 TFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSH 150 (446)
Q Consensus 93 ~v~C~~~~~GC~~~~~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h 150 (446)
++.|+. |+..+....|..|+..+.-+++.|++ .|+... .+.+|..|+...+
T Consensus 10 ~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~---~C~k~f~~~~~L~~H~~~hc 61 (66)
T 2eod_A 10 TQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPN---QCGVGTVAREDLPGHLKDSC 61 (66)
T ss_dssp EEECSS----SCCEEEHHHHHHHHHHCSSSEEECTT---CCSCCEEETTTHHHHHHTTS
T ss_pred Ceeccc----cCCccCHHHHHHHHHHcCCcCccCCc---ccCcccccHHHHHHHHHhhc
Confidence 455664 77666666778888667778888873 387763 4568888887543
No 120
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=83.41 E-value=0.2 Score=35.83 Aligned_cols=29 Identities=31% Similarity=0.791 Sum_probs=23.9
Q ss_pred eeeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006 219 TYCQSGHLVCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 219 ~~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
..-+.||++|..|..+. ..||.||.++..
T Consensus 24 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 24 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp EEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred EeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 45578999999999763 589999998874
No 121
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.36 E-value=0.27 Score=36.28 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=23.0
Q ss_pred eeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006 220 YCQSGHLVCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 220 ~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
.-+.||++|..|..+. ..||.||.++..
T Consensus 30 ~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 30 SLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp EETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred EccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3478999999998763 589999998874
No 122
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.10 E-value=0.24 Score=36.93 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=22.8
Q ss_pred eeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006 220 YCQSGHLVCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 220 ~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
.-+.||++|..|..+. ..||.||.++..
T Consensus 41 ~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 41 VLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp EETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred EECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3467999999998763 589999998864
No 123
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.82 E-value=0.34 Score=35.07 Aligned_cols=27 Identities=22% Similarity=0.693 Sum_probs=22.2
Q ss_pred eccCcccccCcccC-----CCCCCCCCCCCCc
Q psy17006 221 CQSGHLVCSNCRPK-----LSCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~~C~~C~~~-----~~~Cp~Cr~~~~~ 247 (446)
-+.||++|..|..+ ...||.||.++..
T Consensus 31 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 31 TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 37899999999874 2479999998864
No 124
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=82.74 E-value=0.24 Score=37.48 Aligned_cols=28 Identities=25% Similarity=0.552 Sum_probs=22.7
Q ss_pred eeccCcccccCcccC----------CCCCCCCCCCCCc
Q psy17006 220 YCQSGHLVCSNCRPK----------LSCCSTCRGPLGN 247 (446)
Q Consensus 220 ~C~~gh~~C~~C~~~----------~~~Cp~Cr~~~~~ 247 (446)
.-++||++|..|..+ ...||.||.++..
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 34 SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 457899999999865 3479999998864
No 125
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.65 E-value=0.17 Score=38.76 Aligned_cols=27 Identities=30% Similarity=0.632 Sum_probs=22.1
Q ss_pred eccCcccccCcccCC-------CCCCCCCCCCCc
Q psy17006 221 CQSGHLVCSNCRPKL-------SCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~~C~~C~~~~-------~~Cp~Cr~~~~~ 247 (446)
-++||++|..|..+. ..||.||.++..
T Consensus 35 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 35 LHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 367999999998763 479999998764
No 126
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=82.51 E-value=0.09 Score=38.37 Aligned_cols=26 Identities=42% Similarity=0.995 Sum_probs=21.9
Q ss_pred ccCcc-cccCcccCC----CCCCCCCCCCCc
Q psy17006 222 QSGHL-VCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 222 ~~gh~-~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
|.||. +|..|..++ ..||.||.++..
T Consensus 27 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 27 KTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp TEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 78999 899998875 369999999864
No 127
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=81.86 E-value=0.51 Score=46.43 Aligned_cols=27 Identities=44% Similarity=1.043 Sum_probs=24.7
Q ss_pred eccCcc-cccCcccCCCCCCCCCCCCCc
Q psy17006 221 CQSGHL-VCSNCRPKLSCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~-~C~~C~~~~~~Cp~Cr~~~~~ 247 (446)
=|+||. +|..|..++..||.||.++..
T Consensus 311 lpCgH~~fC~~C~~~~~~CP~CR~~i~~ 338 (345)
T 3t6p_A 311 IPCGHLVVCQECAPSLRKCPICRGIIKG 338 (345)
T ss_dssp ETTCCEEECTTTGGGCSBCTTTCCBCCE
T ss_pred cCCCChhHhHHHHhcCCcCCCCCCCccC
Confidence 389999 999999999999999999874
No 128
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.24 E-value=0.2 Score=38.05 Aligned_cols=26 Identities=27% Similarity=0.731 Sum_probs=22.2
Q ss_pred eccCcccccCcccCC----CCCCCCCCCCC
Q psy17006 221 CQSGHLVCSNCRPKL----SCCSTCRGPLG 246 (446)
Q Consensus 221 C~~gh~~C~~C~~~~----~~Cp~Cr~~~~ 246 (446)
-+.||++|..|..+. ..||.||.++.
T Consensus 31 ~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 31 TKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred ccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 478999999998763 58999999986
No 129
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=80.88 E-value=0.39 Score=39.00 Aligned_cols=26 Identities=27% Similarity=0.781 Sum_probs=22.1
Q ss_pred ccCcccccCcccCC-----CCCCCCCCCCCc
Q psy17006 222 QSGHLVCSNCRPKL-----SCCSTCRGPLGN 247 (446)
Q Consensus 222 ~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~ 247 (446)
++||++|..|..+. ..||.||.++..
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 32 PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 78999999998774 379999998863
No 130
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=80.77 E-value=0.22 Score=36.41 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=22.8
Q ss_pred eeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006 220 YCQSGHLVCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 220 ~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
.-+.||++|..|..+. ..||.||.++..
T Consensus 32 ~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 32 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp ECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred EeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3467999999998763 589999998764
No 131
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=80.27 E-value=0.41 Score=41.64 Aligned_cols=41 Identities=20% Similarity=0.402 Sum_probs=30.5
Q ss_pred eccCcccccCcccCC-----CCCCCCCCCCCcc----ccHHHHHHHhhcc
Q psy17006 221 CQSGHLVCSNCRPKL-----SCCSTCRGPLGNI----RNLAMEKVAETVT 261 (446)
Q Consensus 221 C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~~----r~~~~e~~c~~~~ 261 (446)
-++||++|..|..+. ..||.||.++... .+..++++...+.
T Consensus 71 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~ 120 (165)
T 2ckl_B 71 KECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIY 120 (165)
T ss_dssp TTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred CCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence 389999999998763 4799999998532 3566776666553
No 132
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.79 E-value=0.27 Score=36.50 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=23.0
Q ss_pred eeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006 220 YCQSGHLVCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 220 ~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
..+.||++|..|..+. ..||.||.++..
T Consensus 33 ~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 33 ICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp EETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred EcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 3478999999998762 589999998875
No 133
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=79.16 E-value=0.72 Score=35.24 Aligned_cols=77 Identities=17% Similarity=0.393 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHHhhC-CCCCccCCCCCCCcccc-cChhHH
Q psy17006 236 SCCSTCRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHEDAC-EYRPYHCPCPGASCKWS-GALDQV 310 (446)
Q Consensus 236 ~~Cp~Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~C-~~~~~~Cp~~~~~C~~~-g~~~~l 310 (446)
..|+.|...+..... .|+..-...-++.|+. |...+. ...|..|+..- .-.++.|+. |+.. .....|
T Consensus 9 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l 80 (96)
T 2dmd_A 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKT----CDYAAADSSSLNKHLRIHSDERPFKCQI----CPYASRNSSQL 80 (96)
T ss_dssp CCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSS----SCCEESSHHHHHHHHHHSCCCCCEECSS----SSCEESSHHHH
T ss_pred eECCCCCCccCCHHHHHHHHHhcCCCCCEeCCC----CCCccCCHHHHHHHHHHhCCCCCccCCC----CCCccCCHHHH
Confidence 468888887765433 2222222234566765 888776 45788898653 456889985 8777 456789
Q ss_pred HHHhhhccCc
Q psy17006 311 MGHLNQSHKT 320 (446)
Q Consensus 311 ~~H~~~~H~~ 320 (446)
..|++..|..
T Consensus 81 ~~H~~~h~~~ 90 (96)
T 2dmd_A 81 TVHLRSHTGD 90 (96)
T ss_dssp HHHHTTCCSC
T ss_pred HHHHHHhcCC
Confidence 9999877654
No 134
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=78.77 E-value=3.2 Score=31.05 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=30.5
Q ss_pred CceecccccCcCcCccccccccceeccCcccCC-CCCCCCCCCC
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-SCCSTCRGPL 77 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~CP~Cr~~~ 77 (446)
..-.|..|..-+.-+-+.|.||..||+.=+-.. -.|+.+-+..
T Consensus 24 ~~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~~ 67 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGV 67 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTSC
T ss_pred cCccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchhHH
Confidence 456799998776443359999999999876543 4677665543
No 135
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=77.79 E-value=0.47 Score=35.31 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=21.1
Q ss_pred ec-cCcccccCcccCC------CCCCCCCCCCC
Q psy17006 221 CQ-SGHLVCSNCRPKL------SCCSTCRGPLG 246 (446)
Q Consensus 221 C~-~gh~~C~~C~~~~------~~Cp~Cr~~~~ 246 (446)
-+ .||++|..|..+. ..||.||.++.
T Consensus 31 ~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 31 IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 46 7999999998762 47999999754
No 136
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=77.14 E-value=1.8 Score=34.46 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCccccH--HHHH---HHhhcccCcccCCCCCeEeec-CCCchhHHhh-CCCCCccCCCCCCCcccc-cCh
Q psy17006 236 SCCSTCRGPLGNIRNL--AMEK---VAETVTFPCRYQMNGCNVVLL-HTEKPEHEDA-CEYRPYHCPCPGASCKWS-GAL 307 (446)
Q Consensus 236 ~~Cp~Cr~~~~~~r~~--~~e~---~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~-C~~~~~~Cp~~~~~C~~~-g~~ 307 (446)
..|+.|...+.....+ |+.. .-..-++.|+. |+..+. ...|..|+.. -.-.++.|+. |+.. ...
T Consensus 36 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~ 107 (124)
T 2dlq_A 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETFRRRMELRLHMVSHTGEMPYKCSS----CSQQFMQK 107 (124)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEESSHHHHHHHHHHHSSSCSEECSS----SCCEESSH
T ss_pred eECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCccCCHHHHHHHHHHcCCCCCccCCC----ccchhCCH
Confidence 3677787777654432 3221 12344577876 888777 4578889864 4567889985 8777 456
Q ss_pred hHHHHHhhhccCc
Q psy17006 308 DQVMGHLNQSHKT 320 (446)
Q Consensus 308 ~~l~~H~~~~H~~ 320 (446)
..|..|+...|..
T Consensus 108 ~~l~~H~~~~H~~ 120 (124)
T 2dlq_A 108 KDLQSHMIKLHSG 120 (124)
T ss_dssp HHHHHHHHHTSSC
T ss_pred HHHHHHHHHHCCC
Confidence 6899999988864
No 137
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.58 E-value=0.49 Score=38.03 Aligned_cols=27 Identities=30% Similarity=0.742 Sum_probs=21.9
Q ss_pred eccCcccccCcccCC-------CCCCCCCCCCCc
Q psy17006 221 CQSGHLVCSNCRPKL-------SCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~~C~~C~~~~-------~~Cp~Cr~~~~~ 247 (446)
-++||++|..|..+. ..||.||.++..
T Consensus 37 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 37 TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 478999999998752 279999998763
No 138
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=76.20 E-value=2.3 Score=33.02 Aligned_cols=77 Identities=14% Similarity=0.306 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHHhhC-CCCCccCCCCCCCccccc-ChhHH
Q psy17006 236 SCCSTCRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHEDAC-EYRPYHCPCPGASCKWSG-ALDQV 310 (446)
Q Consensus 236 ~~Cp~Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~C-~~~~~~Cp~~~~~C~~~g-~~~~l 310 (446)
..|+.|...+..... .|+..-...-++.|+. |...+. ...|..|+..- .-.++.|+. |+... ....|
T Consensus 18 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L 89 (106)
T 2ee8_A 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDI----CHKAFRRQDHLRDHRYIHSKEKPFKCQE----CGKGFCQSRTL 89 (106)
T ss_dssp CBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSS----SCCBCSCHHHHHHHGGGSCCCCTTSCSS----SCCCCSSHHHH
T ss_pred eECCCCCCccCCHHHHHHHHHHcCCCCCcCCCC----ccchhCCHHHHHHHHHHhCCCCCeECCC----cCCcccCHHHH
Confidence 468888888776443 3444334456678876 888776 45788898643 457788985 87764 56689
Q ss_pred HHHhhhccCc
Q psy17006 311 MGHLNQSHKT 320 (446)
Q Consensus 311 ~~H~~~~H~~ 320 (446)
..|++..+..
T Consensus 90 ~~H~~~H~~~ 99 (106)
T 2ee8_A 90 AVHKTLHMQT 99 (106)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHhCCC
Confidence 9998766543
No 139
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=76.02 E-value=0.38 Score=37.48 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.0
Q ss_pred eeeccCcccccCcccC----CCCCCCCCCCCCc
Q psy17006 219 TYCQSGHLVCSNCRPK----LSCCSTCRGPLGN 247 (446)
Q Consensus 219 ~~C~~gh~~C~~C~~~----~~~Cp~Cr~~~~~ 247 (446)
..-++||.+|..|..+ ...||.||.++..
T Consensus 57 ~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 57 TELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp EEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred EecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3456899999999875 2589999998764
No 140
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=74.54 E-value=1.9 Score=33.77 Aligned_cols=75 Identities=23% Similarity=0.431 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHHhhCCCCCccCCCCCCCccccc-ChhHHH
Q psy17006 236 SCCSTCRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHEDACEYRPYHCPCPGASCKWSG-ALDQVM 311 (446)
Q Consensus 236 ~~Cp~Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~C~~~~~~Cp~~~~~C~~~g-~~~~l~ 311 (446)
..|+.|...+..... .|+.. -.-++.|+. |...+. ...|..|+.--.-.++.|+. |+... ....|.
T Consensus 17 ~~C~~C~~~f~~~~~l~~H~~~--H~~~~~C~~----C~~~f~~~~~l~~H~~H~~~~~~~C~~----C~~~f~~~~~L~ 86 (107)
T 1wjp_A 17 YQCRLCNAKLSSLLEQGSHERL--CRNAAVCPY----CSLRFFSPELKQEHESKCEYKKLTCLE----CMRTFKSSFSIW 86 (107)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHH--HHHSBCCTT----TCCCBSSHHHHHHHHHHCSTGGGEEGG----GTEECSSHHHHH
T ss_pred eECCCCCCccCCHHHHHHHHHH--CCCCccCCC----CCCccCCHHHHHHHHHcCCCCCccCcc----ccchhCCHHHHH
Confidence 478888888775443 23322 133677775 887766 45677888655567889985 87774 466899
Q ss_pred HHhhhccCc
Q psy17006 312 GHLNQSHKT 320 (446)
Q Consensus 312 ~H~~~~H~~ 320 (446)
.|++..|..
T Consensus 87 ~H~~~~H~~ 95 (107)
T 1wjp_A 87 RHQVEVHNQ 95 (107)
T ss_dssp HHHHHTSCC
T ss_pred HHHHHHcCC
Confidence 999877864
No 141
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=74.27 E-value=1.7 Score=31.79 Aligned_cols=73 Identities=16% Similarity=0.430 Sum_probs=47.3
Q ss_pred CCCCCCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHHhh-CCCCCccCCCCCCCcccc-cChhHHH
Q psy17006 237 CCSTCRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHEDA-CEYRPYHCPCPGASCKWS-GALDQVM 311 (446)
Q Consensus 237 ~Cp~Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~-C~~~~~~Cp~~~~~C~~~-g~~~~l~ 311 (446)
.|+.|...+..... .|+..-...-++.|+. |+..+. ...|..|+.. -.-.++.|+. |+.. .....|.
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~ 74 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY----CGKRFHQKSDMKKHTFIHTGEKPHKCQV----CGKAFSQSSNLI 74 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHTCCCEECSS----SCCEESSHHHHHHHHHHHHTCCCEECTT----TSCEESSHHHHH
T ss_pred cCCCCcccccCchhHHHHHHHcCCCCCeeCCc----CChhhCCHHHHHHHHHHhcCCCCCcCCC----cchhhCChHHHH
Confidence 47777776665433 3444434456677876 887775 4567788753 3457788885 7776 4566888
Q ss_pred HHhhhc
Q psy17006 312 GHLNQS 317 (446)
Q Consensus 312 ~H~~~~ 317 (446)
.|++..
T Consensus 75 ~H~~~H 80 (82)
T 2kmk_A 75 THSRKH 80 (82)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 898754
No 142
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=71.56 E-value=2.6 Score=36.67 Aligned_cols=122 Identities=17% Similarity=0.342 Sum_probs=57.6
Q ss_pred CceecccccCcCcCcc-cc----c--cccceeccCcccCC------------------CCCCCCCCCCccccch--HHHH
Q psy17006 35 SLFECPVCFDYVLPPI-IQ----C--QSGHLVCSNCRPKL------------------SCCSTCRGPLGNIRNL--AMEK 87 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv-~q----C--~~GH~~C~~C~~~~------------------~~CP~Cr~~~~~~~~~--~~e~ 87 (446)
..+.|++|...+.... +. - ...-..|..|-... -.|+.|...+....++ -+..
T Consensus 20 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 99 (190)
T 2i13_A 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT 99 (190)
T ss_dssp -----------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred CCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHh
Confidence 4588999988886542 11 0 01123455554320 2577777655432221 1112
Q ss_pred HhhhccccccccCCCCeeeecC-CChhhHhhh-CCCccccCCCCCCCCcccc-ChhHHHHHHhhcCC-CcceecCccEEE
Q psy17006 88 VAETVTFPCRYQMNGCNVVLLH-TEKPEHEDA-CEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHK-TITTLQGEDIVF 163 (446)
Q Consensus 88 ~~~~l~v~C~~~~~GC~~~~~~-~~~~~H~~~-C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~-~~~~c~~c~~~f 163 (446)
-.....+.|+. |+..+.. ..|..|+.. -.-+++.|+ .|+... ...+|..|+...+. ....|+.|+..|
T Consensus 100 h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~----~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f 171 (190)
T 2i13_A 100 HTGEKPYACPE----CGKSFSQLAHLRAHQRTHTGEKPYKCP----ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF 171 (190)
T ss_dssp HHTCCCEECTT----TCCEESSHHHHHHHHHHHHCCCCEECT----TTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred cCCCCCCcCCC----CCCccCCHHHHHHHHHHhCCCCCeECC----CCCcccCCHHHHHHHHHhcCCCCCeECCCCCCcc
Confidence 22334566764 7766654 456677642 234567776 477665 44677788775443 456777777665
Q ss_pred E
Q psy17006 164 L 164 (446)
Q Consensus 164 ~ 164 (446)
.
T Consensus 172 ~ 172 (190)
T 2i13_A 172 S 172 (190)
T ss_dssp S
T ss_pred C
Confidence 3
No 143
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=70.47 E-value=2.2 Score=31.30 Aligned_cols=75 Identities=17% Similarity=0.421 Sum_probs=44.9
Q ss_pred CCCCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHHhhCCCCCccCCCCCCCccccc-ChhHHHHHh
Q psy17006 239 STCRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHEDACEYRPYHCPCPGASCKWSG-ALDQVMGHL 314 (446)
Q Consensus 239 p~Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~C~~~~~~Cp~~~~~C~~~g-~~~~l~~H~ 314 (446)
+.|...+..... .|+..-...-++.|+. .||+..+. ...|..|+..-.- +.|+.++ .|+... ....|..|+
T Consensus 7 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~-~C~~~f~~~~~l~~H~ 81 (85)
T 2j7j_A 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRHEKVHAG--YPCKKDD-SCSFVGKTWTLYLKHV 81 (85)
T ss_dssp TTCCCEESSHHHHHHHHHHHHTTCCEECCS--TTCCCEESSHHHHHHHHHHHHS--EECCSCS-SCCCEESSHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCCeeCCC--CCCcCccCCHHHHHHHHHHhCC--CCCCCCC-CCCCccCCHHHHHHHH
Confidence 667666654332 3443334456677865 47887776 4567777753222 6777532 377764 456788888
Q ss_pred hhcc
Q psy17006 315 NQSH 318 (446)
Q Consensus 315 ~~~H 318 (446)
+..|
T Consensus 82 ~~hh 85 (85)
T 2j7j_A 82 AECH 85 (85)
T ss_dssp HHCC
T ss_pred HhcC
Confidence 7655
No 144
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=70.34 E-value=1.9 Score=33.86 Aligned_cols=45 Identities=16% Similarity=0.547 Sum_probs=35.5
Q ss_pred CCceecccccCcCcCccccccccceeccCcccCC--CCCCCCCCCCc
Q psy17006 34 ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCSTCRGPLG 78 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~CP~Cr~~~~ 78 (446)
.+=|.|..|...|....+.-..|..+|..|..++ +.|..|.++|.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 3558899999999654333456999999999875 68999998875
No 145
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=69.74 E-value=1.3 Score=35.71 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=22.1
Q ss_pred eeccCcccccCcccC---------CCCCCCCCCCCCc
Q psy17006 220 YCQSGHLVCSNCRPK---------LSCCSTCRGPLGN 247 (446)
Q Consensus 220 ~C~~gh~~C~~C~~~---------~~~Cp~Cr~~~~~ 247 (446)
.-++||++|..|..+ ...||.||..+..
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 346799999999754 2489999998875
No 146
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=69.14 E-value=3.7 Score=31.94 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=17.5
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHHhhcCC
Q psy17006 122 RPYHCPCPGASCKWSG-ALDQVMGHLNQSHK 151 (446)
Q Consensus 122 ~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~ 151 (446)
+++.|+ .|+... ...+|..|++..|.
T Consensus 68 ~~~~C~----~C~~~f~~~~~L~~H~~~~H~ 94 (107)
T 1wjp_A 68 KKLTCL----ECMRTFKSSFSIWRHQVEVHN 94 (107)
T ss_dssp GGGEEG----GGTEECSSHHHHHHHHHHTSC
T ss_pred CCccCc----cccchhCCHHHHHHHHHHHcC
Confidence 556776 377664 45788888876664
No 147
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=68.89 E-value=3.5 Score=31.12 Aligned_cols=51 Identities=25% Similarity=0.552 Sum_probs=31.7
Q ss_pred cccccccCCCCeeeecC-CChhhHhhhCCC---ccccCCCCCCCCcccc-ChhHHHHHHhhcCC
Q psy17006 93 TFPCRYQMNGCNVVLLH-TEKPEHEDACEY---RPYHCPCPGASCKWSG-ALDQVMGHLNQSHK 151 (446)
Q Consensus 93 ~v~C~~~~~GC~~~~~~-~~~~~H~~~C~~---~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~ 151 (446)
.+.|+. |+..+.. ..|..|+..-.- .++.|+ .|+... ....|..|++..|.
T Consensus 35 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~~~C~----~C~~~f~~~~~L~~H~~~~H~ 90 (95)
T 2yt9_A 35 PYSCPV----CGLRFKRKDRMSYHVRSHDGSVGKPYICQ----SCGKGFSRPDHLNGHIKQVHS 90 (95)
T ss_dssp SEECSS----SCCEESCHHHHHHHHHHHCCCCCSSBCCS----SSCCCBSSHHHHHHHHHHTSC
T ss_pred CCcCCC----CCCccCCHHHHHHHHHHhcCCCCCceECC----CccchhCCHHHHHHHHHHhcC
Confidence 345554 6555543 455666643222 567887 488775 55789999987775
No 148
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=67.68 E-value=1.4 Score=34.67 Aligned_cols=37 Identities=30% Similarity=0.784 Sum_probs=28.9
Q ss_pred eecccccCcCcCccccccccceeccCcccC---CCCCCCCCCCCc
Q psy17006 37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPK---LSCCSTCRGPLG 78 (446)
Q Consensus 37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~---~~~CP~Cr~~~~ 78 (446)
..||+|...|.. ..|+..|..|-.. ...||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHHH
Confidence 889999988763 1256669999775 368999999886
No 149
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=65.47 E-value=3.6 Score=29.85 Aligned_cols=66 Identities=17% Similarity=0.358 Sum_probs=42.8
Q ss_pred cccccccCCCCeeeecC-CChhhHhh-hC-CCccccCCCCCCCCcccc-ChhHHHHHHhhcCC-CcceecCccEE
Q psy17006 93 TFPCRYQMNGCNVVLLH-TEKPEHED-AC-EYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHK-TITTLQGEDIV 162 (446)
Q Consensus 93 ~v~C~~~~~GC~~~~~~-~~~~~H~~-~C-~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~-~~~~c~~c~~~ 162 (446)
.+.|+. .+|+..+.. ..|..|+. .- .-+++.|+.+ +|+... ....|..|++..+. ....|+.|+..
T Consensus 7 ~~~C~~--~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~ 77 (79)
T 2dlk_A 7 GMPCDF--PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEP--ACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS 77 (79)
T ss_dssp SEECSS--TTTCCEESSHHHHHHHHHHGGGSCCCEECSCT--TTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCC
T ss_pred CccCCC--CCCcCccCCHHHHHHHHHHHhCCCCCeECCCC--CCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCC
Confidence 345654 368777664 56777875 22 3467888753 588775 55889999885443 55678888654
No 150
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=65.04 E-value=7.3 Score=28.28 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=30.6
Q ss_pred CceecccccCcCcCccccccccceeccCcccCC-CCCCCCCCCC
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-SCCSTCRGPL 77 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~CP~Cr~~~ 77 (446)
..-.|..|..-+.-+.++|.||..||+.=+-.- -.|+.+-+..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~~ 57 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEV 57 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSCS
T ss_pred cCCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhHH
Confidence 346799999866443359999999999877543 4687765543
No 151
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=64.80 E-value=1.5 Score=43.71 Aligned_cols=30 Identities=27% Similarity=0.637 Sum_probs=24.2
Q ss_pred eeeeccCcccccCcccC-----CCCCCCCCCCCCc
Q psy17006 218 FTYCQSGHLVCSNCRPK-----LSCCSTCRGPLGN 247 (446)
Q Consensus 218 ~~~C~~gh~~C~~C~~~-----~~~Cp~Cr~~~~~ 247 (446)
...-++||++|..|... ...||.||.++..
T Consensus 345 pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 345 VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34458899999999863 4689999998875
No 152
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=64.65 E-value=4.6 Score=30.60 Aligned_cols=32 Identities=25% Similarity=0.660 Sum_probs=26.7
Q ss_pred CCceecccccCcCcCcc-ccccc--cceeccCccc
Q psy17006 34 ASLFECPVCFDYVLPPI-IQCQS--GHLVCSNCRP 65 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv-~qC~~--GH~~C~~C~~ 65 (446)
...|.|.+|.+-|.+-- +||.. +|.||-.|-.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence 46689999999999874 59974 8999999964
No 153
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=64.51 E-value=1.5 Score=33.70 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=27.9
Q ss_pred eccCcccccCcccCC----CCCCCCCCCCCc---cccHHHHHHHhh
Q psy17006 221 CQSGHLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAET 259 (446)
Q Consensus 221 C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~---~r~~~~e~~c~~ 259 (446)
-++||++|..|..+. ..||.|+.++.. +.|..+.+.+..
T Consensus 30 ~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~ 75 (85)
T 2kr4_A 30 LPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQA 75 (85)
T ss_dssp CTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred CCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHH
Confidence 357999999998762 589999998874 345555554443
No 154
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.91 E-value=1.2 Score=33.66 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=22.1
Q ss_pred eccCcccccCcccC----CCCCCCCCCCCCc
Q psy17006 221 CQSGHLVCSNCRPK----LSCCSTCRGPLGN 247 (446)
Q Consensus 221 C~~gh~~C~~C~~~----~~~Cp~Cr~~~~~ 247 (446)
-+.||.++..|..+ ...||.||.++..
T Consensus 46 ~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 46 GECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp ETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 35899999999875 2589999998764
No 155
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=63.37 E-value=7 Score=28.85 Aligned_cols=68 Identities=25% Similarity=0.484 Sum_probs=42.6
Q ss_pred cccccccCCCCeeeecC-CChhhHhhh-CCCccccCCCCCCCCcccc-ChhHHHHHHhhcCC-CcceecCccEEEE
Q psy17006 93 TFPCRYQMNGCNVVLLH-TEKPEHEDA-CEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHK-TITTLQGEDIVFL 164 (446)
Q Consensus 93 ~v~C~~~~~GC~~~~~~-~~~~~H~~~-C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~-~~~~c~~c~~~f~ 164 (446)
.+.|+. .||+..+.. ..|..|+.. -.-.++.|+.+ .|+... ...+|..|+...+. ....|..|+..|.
T Consensus 5 ~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 76 (89)
T 2wbs_A 5 THTCDY--AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWD--GCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS 76 (89)
T ss_dssp CEECCS--TTTCCEESSHHHHHHHHTTSCSSCCEECCST--TTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred CeeCCC--CCCCCcCCCHHHHHHHHHhcCCCCCcCCCCC--CCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccC
Confidence 455664 367766653 566777753 22356778742 577765 55778888875443 4567888887663
No 156
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=63.15 E-value=5.6 Score=33.10 Aligned_cols=81 Identities=14% Similarity=0.318 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHHhhC-CCCCccCCCCCCCccccc-ChhHH
Q psy17006 236 SCCSTCRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHEDAC-EYRPYHCPCPGASCKWSG-ALDQV 310 (446)
Q Consensus 236 ~~Cp~Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~C-~~~~~~Cp~~~~~C~~~g-~~~~l 310 (446)
..|+.|...+..... .|+..-...-++.|+. .+|...+. ...|..|+..- .-.++.|+++ +|+... ....|
T Consensus 63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~--~C~k~f~~~~~L 138 (155)
T 2rpc_A 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF--PGCGKIFARSENLKIHKRTHTGEKPFKCEFE--GCDRRFANSSDR 138 (155)
T ss_dssp TTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC--TTTCCEESCHHHHHHHHTTTCSSCSBCCSST--TCCCCBSSHHHH
T ss_pred cCCCCcccccCCHHHHHHHHHhcCCCCcccCCc--CCCCCccCCHHHHHHHHHhhCCCCCccCCCC--CCCCccCCHHHH
Confidence 468888887775433 3433334455677875 37988876 46788898643 3568899864 376664 46689
Q ss_pred HHHhhhccCc
Q psy17006 311 MGHLNQSHKT 320 (446)
Q Consensus 311 ~~H~~~~H~~ 320 (446)
..|++..+..
T Consensus 139 ~~H~~~H~~~ 148 (155)
T 2rpc_A 139 KKHMHVHTSD 148 (155)
T ss_dssp HHSSTTTTSC
T ss_pred HHHHHHhcCC
Confidence 9998865543
No 157
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=62.85 E-value=12 Score=28.74 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=29.0
Q ss_pred CceecccccCcCc--CccccccccceeccCcccCC-CCCCCCCC
Q psy17006 35 SLFECPVCFDYVL--PPIIQCQSGHLVCSNCRPKL-SCCSTCRG 75 (446)
Q Consensus 35 ~~l~C~iC~~~l~--~Pv~qC~~GH~~C~~C~~~~-~~CP~Cr~ 75 (446)
..-.|..|..-+. .|+ .|.||..||+.=+-.- -.|+.+-+
T Consensus 24 ~~~rC~~C~kkvgl~~~f-~CrCg~~FC~~HRy~e~H~C~fDyK 66 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSF-ECRCGNNFCASHRYAEAHGCNYDYK 66 (85)
T ss_dssp CCCBCSSSCCBCSSSSCE-ECTTCCEECTTTCSTGGGTCCSCCS
T ss_pred cCccchhhCCeecccCCe-EcCCCCEecccCCCccCCCCcchhh
Confidence 3467999987554 374 9999999999876543 47877544
No 158
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=61.68 E-value=3.6 Score=32.13 Aligned_cols=76 Identities=17% Similarity=0.308 Sum_probs=51.6
Q ss_pred CCCCCCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHHhh-CCCCCccCCCCCCCccccc-ChhHHH
Q psy17006 237 CCSTCRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHEDA-CEYRPYHCPCPGASCKWSG-ALDQVM 311 (446)
Q Consensus 237 ~Cp~Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~-C~~~~~~Cp~~~~~C~~~g-~~~~l~ 311 (446)
.| .|...+..... .|+..-...-++.|+. |...+. ...|..|+.. -.-.++.|+. |+... ....|.
T Consensus 12 ~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~ 82 (110)
T 2csh_A 12 PC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGV----CGKKFKMKHHLVGHMKIHTGIKPYECNI----CAKRFMWRDSFH 82 (110)
T ss_dssp EC-TTSCEESSHHHHHHHHHHHSCCCSEECTT----TSCEESSSHHHHHHHTTTCCCCCEECSS----SCCEESCHHHHH
T ss_pred ec-cCCCccCCHHHHHHHHHHcCCCcCccCCC----CCcccCCHHHHHHHHHHcCCCCCeeCCC----CcchhcCHHHHH
Confidence 56 67666664333 3444434455678876 888776 4678889864 3456788985 87774 467899
Q ss_pred HHhhhccCcc
Q psy17006 312 GHLNQSHKTI 321 (446)
Q Consensus 312 ~H~~~~H~~~ 321 (446)
.|++..|+..
T Consensus 83 ~H~~~~~~~~ 92 (110)
T 2csh_A 83 RHVTSCTKSY 92 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHccccc
Confidence 9999888753
No 159
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=61.64 E-value=8.8 Score=28.78 Aligned_cols=10 Identities=20% Similarity=0.587 Sum_probs=6.1
Q ss_pred CCCCCCCCCc
Q psy17006 69 CCSTCRGPLG 78 (446)
Q Consensus 69 ~CP~Cr~~~~ 78 (446)
.|+.|...+.
T Consensus 10 ~C~~C~~~f~ 19 (96)
T 2dmd_A 10 KCEVCGKCFS 19 (96)
T ss_dssp CBTTTTBCCC
T ss_pred ECCCCCCccC
Confidence 5666666554
No 160
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=61.18 E-value=9.2 Score=31.57 Aligned_cols=12 Identities=8% Similarity=-0.053 Sum_probs=6.4
Q ss_pred eecccccCcCcC
Q psy17006 37 FECPVCFDYVLP 48 (446)
Q Consensus 37 l~C~iC~~~l~~ 48 (446)
+.|++|...+..
T Consensus 4 ~~C~~C~~~f~~ 15 (155)
T 2gli_A 4 CRWDGCSQEFDS 15 (155)
T ss_dssp CCBTTCCCBCSC
T ss_pred CCcCCCccccCC
Confidence 445555555544
No 161
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=61.02 E-value=10 Score=29.62 Aligned_cols=69 Identities=13% Similarity=0.334 Sum_probs=40.3
Q ss_pred hhccccccccCCCCeeeecC-CChhhHhhh-CCCccccCCCCCCCCcccc-ChhHHHHHHhhcCC-Cccee--cCccEEE
Q psy17006 90 ETVTFPCRYQMNGCNVVLLH-TEKPEHEDA-CEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHK-TITTL--QGEDIVF 163 (446)
Q Consensus 90 ~~l~v~C~~~~~GC~~~~~~-~~~~~H~~~-C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~-~~~~c--~~c~~~f 163 (446)
..-.+.|++ ..|+..+.. ..|..|+.. =.-+++.|+ .|+... ...+|..|+...+. ....| +.|+..|
T Consensus 33 ~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f 106 (119)
T 2jp9_A 33 GEKPYQCDF--KDCERRFSRSDQLKRHQRRHTGVKPFQCK----TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKF 106 (119)
T ss_dssp TTCCEECCS--TTCCCEESSHHHHHHHHHHHHCCCCEECT----TTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEE
T ss_pred CCCCccCCC--CCCcCccCCHHHHHHHHHHcCCCCCccCC----ccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCcccc
Confidence 344566663 147766653 556677642 223456776 477664 45777888775443 44667 6677665
Q ss_pred E
Q psy17006 164 L 164 (446)
Q Consensus 164 ~ 164 (446)
.
T Consensus 107 ~ 107 (119)
T 2jp9_A 107 A 107 (119)
T ss_dssp S
T ss_pred C
Confidence 3
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=60.86 E-value=2.7 Score=39.14 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=29.4
Q ss_pred eeccCcccccCcccCC-----CCCCCCCCCCCc---cccHHHHHHHhhc
Q psy17006 220 YCQSGHLVCSNCRPKL-----SCCSTCRGPLGN---IRNLAMEKVAETV 260 (446)
Q Consensus 220 ~C~~gh~~C~~C~~~~-----~~Cp~Cr~~~~~---~r~~~~e~~c~~~ 260 (446)
.-++||++|..|..+. ..||.|+.++.. +.|..+.+.+..+
T Consensus 223 ~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 223 ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 3467999999998752 249999999873 3466666655544
No 163
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=59.52 E-value=1.9 Score=34.26 Aligned_cols=40 Identities=10% Similarity=-0.008 Sum_probs=28.6
Q ss_pred eccCcccccCcccC----CCCCCCCCCCCCc---cccHHHHHHHhhc
Q psy17006 221 CQSGHLVCSNCRPK----LSCCSTCRGPLGN---IRNLAMEKVAETV 260 (446)
Q Consensus 221 C~~gh~~C~~C~~~----~~~Cp~Cr~~~~~---~r~~~~e~~c~~~ 260 (446)
-+.||++|..|..+ ...||.|+.++.. +.|..+.+.+..+
T Consensus 45 ~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 45 LPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp ETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred CCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 46799999999765 2589999998864 3466665554443
No 164
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=59.45 E-value=10 Score=27.46 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=29.5
Q ss_pred CceecccccCcCcCccccccccceeccCcccCC-CCCCCCCCC
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-SCCSTCRGP 76 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~CP~Cr~~ 76 (446)
..-.|..|..-+.-+-++|.||..||+.=+-.- -.|+.+-+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk~ 56 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKS 56 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCSC
T ss_pred cCCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhhH
Confidence 346799999865443359999999999876543 467765443
No 165
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=59.40 E-value=22 Score=26.73 Aligned_cols=40 Identities=25% Similarity=0.618 Sum_probs=29.2
Q ss_pred ceeccc--ccCcCcC----ccccc------cccceeccCcccCCCCCCCCCCC
Q psy17006 36 LFECPV--CFDYVLP----PIIQC------QSGHLVCSNCRPKLSCCSTCRGP 76 (446)
Q Consensus 36 ~l~C~i--C~~~l~~----Pv~qC------~~GH~~C~~C~~~~~~CP~Cr~~ 76 (446)
..-||. |...+.. +..+| .||+.||..|...+.. -.|...
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSSC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC-Cccccc
Confidence 556998 9888742 22489 6899999999987755 566553
No 166
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=58.74 E-value=3.9 Score=29.28 Aligned_cols=37 Identities=22% Similarity=0.611 Sum_probs=28.3
Q ss_pred ecccccCcCcCc-ccccc-ccceeccCcc----cCCCCCCCCC
Q psy17006 38 ECPVCFDYVLPP-IIQCQ-SGHLVCSNCR----PKLSCCSTCR 74 (446)
Q Consensus 38 ~C~iC~~~l~~P-v~qC~-~GH~~C~~C~----~~~~~CP~Cr 74 (446)
.|-.|...+.+. +|+|. |++.||..|- +.+..||.|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTTC
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCCC
Confidence 488998888654 37886 6999999994 3467899873
No 167
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=58.05 E-value=6.1 Score=29.26 Aligned_cols=75 Identities=16% Similarity=0.334 Sum_probs=48.3
Q ss_pred CCC--CCCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHHhh-CCCCCccCCCCCCCccccc-ChhH
Q psy17006 237 CCS--TCRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHEDA-CEYRPYHCPCPGASCKWSG-ALDQ 309 (446)
Q Consensus 237 ~Cp--~Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~-C~~~~~~Cp~~~~~C~~~g-~~~~ 309 (446)
.|+ .|...+..... .|+..-...-++.|+. |+..+. ...|..|+.. -.-.++.|+. |+... ....
T Consensus 6 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~ 77 (90)
T 1a1h_A 6 ACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI----CMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDE 77 (90)
T ss_dssp ECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHH
T ss_pred ECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCC----CCcccCCHHHHHHHHHHcCCCCCccCCC----CCchhCCHHH
Confidence 466 47776665433 3444334456677876 887776 4567788753 3457788885 77764 5668
Q ss_pred HHHHhhhccC
Q psy17006 310 VMGHLNQSHK 319 (446)
Q Consensus 310 l~~H~~~~H~ 319 (446)
|..|++..+.
T Consensus 78 l~~H~~~H~~ 87 (90)
T 1a1h_A 78 RKRHTKIHLR 87 (90)
T ss_dssp HHHHHGGGGC
T ss_pred HHHHHHHhcc
Confidence 9999876543
No 168
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=57.21 E-value=17 Score=27.72 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=23.3
Q ss_pred Ccee-cccccCcCcC----cccccc-ccceeccCcccCC
Q psy17006 35 SLFE-CPVCFDYVLP----PIIQCQ-SGHLVCSNCRPKL 67 (446)
Q Consensus 35 ~~l~-C~iC~~~l~~----Pv~qC~-~GH~~C~~C~~~~ 67 (446)
+.+. ||-|..++.. +..+|. ||+.||..|....
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4454 9999886642 224785 8999999997644
No 169
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=56.19 E-value=4.4 Score=30.92 Aligned_cols=38 Identities=29% Similarity=0.766 Sum_probs=26.9
Q ss_pred eecccccCcCcCccccccccceeccCcccCC---CCCCCCCCCCcc
Q psy17006 37 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL---SCCSTCRGPLGN 79 (446)
Q Consensus 37 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~---~~CP~Cr~~~~~ 79 (446)
..||.|...|..- .++..|..|-... ..||.|.+++..
T Consensus 3 ~~CP~C~~~l~~~-----~~~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERN-----GDTAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEEC-----SSEEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred CCCCCCCCccccC-----CCceECccccccCCCcccCcchhhHHHH
Confidence 6799999887531 2455578886653 479999988863
No 170
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=55.74 E-value=2.5 Score=33.34 Aligned_cols=40 Identities=15% Similarity=0.017 Sum_probs=28.8
Q ss_pred eccC-cccccCcccC----CCCCCCCCCCCCc---cccHHHHHHHhhc
Q psy17006 221 CQSG-HLVCSNCRPK----LSCCSTCRGPLGN---IRNLAMEKVAETV 260 (446)
Q Consensus 221 C~~g-h~~C~~C~~~----~~~Cp~Cr~~~~~---~r~~~~e~~c~~~ 260 (446)
-+.| |++|..|..+ ...||.|+.++.. +.|..+.+.+..+
T Consensus 38 ~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 38 LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred CCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 4678 9999999765 2589999998874 3466665555443
No 171
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=54.55 E-value=10 Score=26.26 Aligned_cols=29 Identities=24% Similarity=0.388 Sum_probs=19.1
Q ss_pred cCCCCCCCCCCCCccCCCCceecccccCc
Q psy17006 17 RHEPTHPSMCPGTSTDLASLFECPVCFDY 45 (446)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~~l~C~iC~~~ 45 (446)
.++|+...-+.+.-++|.+.+.||+|...
T Consensus 17 ~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 17 KGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp TCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 34444444444456788899999999753
No 172
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=54.18 E-value=6.2 Score=27.44 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=30.4
Q ss_pred CeEeec-CCCchhHHhh-C--CCCCccCCCCCCCcccc-cChhHHHHHhhhccC
Q psy17006 271 CNVVLL-HTEKPEHEDA-C--EYRPYHCPCPGASCKWS-GALDQVMGHLNQSHK 319 (446)
Q Consensus 271 C~~~~~-~~~l~~He~~-C--~~~~~~Cp~~~~~C~~~-g~~~~l~~H~~~~H~ 319 (446)
|+..+. ...|..|+.. - .-.++.|+. |+.. .....|..|.+..|.
T Consensus 16 C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~----C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 16 CSRVYTHISNFCRHYVTSHKRNVKVYPCPF----CFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp TCCEESSHHHHHHHHHHHSSSSCCCEECTT----TCCEESCHHHHHHHHHHHTC
T ss_pred CcchhCCHHHHHHHHHHHcCCCCcCeECCC----CCCccCCHHHHHHHHHHHcC
Confidence 555554 3456677754 2 457888885 7666 456689999988775
No 173
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=54.17 E-value=0.49 Score=35.86 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=48.2
Q ss_pred CCCCCCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHHhhCCCCCccCCCCCCCcccc-cChhHHHH
Q psy17006 237 CCSTCRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHEDACEYRPYHCPCPGASCKWS-GALDQVMG 312 (446)
Q Consensus 237 ~Cp~Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~C~~~~~~Cp~~~~~C~~~-g~~~~l~~ 312 (446)
.|+.|...+..... .|+..-...-++.|+. |+..+. ...|..|+..---.++.|+ .|+.. .....|..
T Consensus 5 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~c~----~C~~~f~~~~~L~~ 76 (88)
T 1llm_C 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDERKRHRDIQHILPILED----KVEELLSKNYHLEN 76 (88)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHHHHTHHHHHHH----HHHHHHHHHHHHHH
T ss_pred cCCCCCCccCCHHHHHHHHHHcCCCCCccCCC----CCCccCCHHHHHHHHHHhCCCcchHH----HHHHHHHHHhhhHH
Confidence 57777777665333 3443334455677775 887776 4677778765444666776 37655 34557888
Q ss_pred HhhhccCc
Q psy17006 313 HLNQSHKT 320 (446)
Q Consensus 313 H~~~~H~~ 320 (446)
|++..|..
T Consensus 77 H~~~~h~~ 84 (88)
T 1llm_C 77 EVARLKKL 84 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888864
No 174
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=53.90 E-value=16 Score=27.68 Aligned_cols=32 Identities=19% Similarity=0.486 Sum_probs=23.6
Q ss_pred CceecccccCcCcCc--ccccc-ccceeccCcccC
Q psy17006 35 SLFECPVCFDYVLPP--IIQCQ-SGHLVCSNCRPK 66 (446)
Q Consensus 35 ~~l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 66 (446)
+.-.|.+|...+.-- -..|. ||.+||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 345799998887532 24675 699999999765
No 175
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=53.51 E-value=8.3 Score=27.81 Aligned_cols=31 Identities=13% Similarity=-0.050 Sum_probs=14.3
Q ss_pred Ccccc-ChhHHHHHHhhcCC-CcceecCccEEE
Q psy17006 133 CKWSG-ALDQVMGHLNQSHK-TITTLQGEDIVF 163 (446)
Q Consensus 133 C~~~~-~~~~l~~H~~~~h~-~~~~c~~c~~~f 163 (446)
|+... ...+|..|+...+. ....|+.|+..|
T Consensus 35 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 67 (82)
T 2kmk_A 35 CGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAF 67 (82)
T ss_dssp SCCEESSHHHHHHHHHHHHTCCCEECTTTSCEE
T ss_pred CChhhCCHHHHHHHHHHhcCCCCCcCCCcchhh
Confidence 44443 33455555554332 334555555443
No 176
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=53.39 E-value=11 Score=28.96 Aligned_cols=74 Identities=15% Similarity=0.328 Sum_probs=39.8
Q ss_pred CCCCCCCCCCccccchH--HHHHhhhccccccccCCCCeeeecC-CChhhHhhh-CCCccccCCCCCCCCcccc-ChhHH
Q psy17006 68 SCCSTCRGPLGNIRNLA--MEKVAETVTFPCRYQMNGCNVVLLH-TEKPEHEDA-CEYRPYHCPCPGASCKWSG-ALDQV 142 (446)
Q Consensus 68 ~~CP~Cr~~~~~~~~~~--~e~~~~~l~v~C~~~~~GC~~~~~~-~~~~~H~~~-C~~~~v~Cp~~~~~C~~~~-~~~~l 142 (446)
-.|+.|...+....+.. ++.-.....+.|+. |...+.. ..|..|+.. -.-+++.|+ .|+... ...+|
T Consensus 18 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~----~C~~~f~~~~~L 89 (106)
T 2ee8_A 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDI----CHKAFRRQDHLRDHRYIHSKEKPFKCQ----ECGKGFCQSRTL 89 (106)
T ss_dssp CBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSS----SCCBCSCHHHHHHHGGGSCCCCTTSCS----SSCCCCSSHHHH
T ss_pred eECCCCCCccCCHHHHHHHHHHcCCCCCcCCCC----ccchhCCHHHHHHHHHHhCCCCCeECC----CcCCcccCHHHH
Confidence 36888877665322211 11222234566764 7666543 566677643 233456676 366654 44667
Q ss_pred HHHHhhc
Q psy17006 143 MGHLNQS 149 (446)
Q Consensus 143 ~~H~~~~ 149 (446)
..|++..
T Consensus 90 ~~H~~~H 96 (106)
T 2ee8_A 90 AVHKTLH 96 (106)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7776543
No 177
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=52.39 E-value=3.6 Score=33.65 Aligned_cols=44 Identities=23% Similarity=0.444 Sum_probs=34.1
Q ss_pred CceecccccCcCcCccccccccceeccCcccCC--CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~CP~Cr~~~~ 78 (446)
+-|.|..|...|..--+.-..|..+|..|..+. +.|..|.++|.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCC
Confidence 558899999998753233356999999998764 68999999875
No 178
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.13 E-value=13 Score=29.06 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCccccHHHHHHH--h---hcccCcccCCCCCeEee---cCCCchhHHhh-CCCCCccCCCCCCCcccc-c
Q psy17006 236 SCCSTCRGPLGNIRNLAMEKVA--E---TVTFPCRYQMNGCNVVL---LHTEKPEHEDA-CEYRPYHCPCPGASCKWS-G 305 (446)
Q Consensus 236 ~~Cp~Cr~~~~~~r~~~~e~~c--~---~~~~~C~~~~~GC~~~~---~~~~l~~He~~-C~~~~~~Cp~~~~~C~~~-g 305 (446)
..|+.|...+.....+...... . .....|+. |+..+ ....|..|+.. -.-+|+.|+. |+.. .
T Consensus 20 ~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~----C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~----C~k~f~ 91 (115)
T 2dmi_A 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNN----NPKRWSKPRKRSLLEMEGKEDAQKVLKCMY----CGHSFE 91 (115)
T ss_dssp EEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCC----CCSCCSSCCCCCCCCCCCSCCCCSSCBCSS----SCCBCS
T ss_pred EECCccCchhcCHHHHHHHHHHhCccccCCCccCCC----CCcccccccHHHHHHHhhccCCCcceECCC----CCCccC
Confidence 3677787777654432222111 0 11122544 66554 45677888753 3457888985 8777 4
Q ss_pred ChhHHHHHhhhccCcc
Q psy17006 306 ALDQVMGHLNQSHKTI 321 (446)
Q Consensus 306 ~~~~l~~H~~~~H~~~ 321 (446)
....|..|++..|...
T Consensus 92 ~~~~L~~H~~~hh~~~ 107 (115)
T 2dmi_A 92 SLQDLSVHMIKTKHYQ 107 (115)
T ss_dssp SHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHhCCcc
Confidence 5668999999888653
No 179
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=51.09 E-value=11 Score=29.88 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=8.2
Q ss_pred ceecc--cccCcCcCc
Q psy17006 36 LFECP--VCFDYVLPP 49 (446)
Q Consensus 36 ~l~C~--iC~~~l~~P 49 (446)
.|.|+ +|...+...
T Consensus 5 ~~~C~~~~C~~~f~~~ 20 (124)
T 1ubd_C 5 TIACPHKGCTKMFRDN 20 (124)
T ss_dssp CEECCSTTCCCEESSH
T ss_pred cccCCCCCCcCccCCH
Confidence 35666 666666543
No 180
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=50.80 E-value=12 Score=28.20 Aligned_cols=59 Identities=19% Similarity=0.353 Sum_probs=25.7
Q ss_pred CCeeeecC-CChhhHhh-hCCCccccCCCCCCCCcccc-ChhHHHHHHhhcCC-CcceecCccEE
Q psy17006 102 GCNVVLLH-TEKPEHED-ACEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHK-TITTLQGEDIV 162 (446)
Q Consensus 102 GC~~~~~~-~~~~~H~~-~C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~-~~~~c~~c~~~ 162 (446)
+|+..+.. ..|..|+. .-.-+++.|+.. .|+... ...+|..|+...+. ....|..|+..
T Consensus 22 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 84 (100)
T 2ebt_A 22 GCTKVYTKSSHLKAHLRTHTGEKPYKCTWE--GCDWRFARSDELTRHYRKHTGAKPFQCGVCNRS 84 (100)
T ss_dssp SCCCEESCHHHHHHHHHHHSCCCCEECCSS--SCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCB
T ss_pred CCCCcccCHHHHHHHHHHhCCCCCeeCCCC--CCCCccCCHHHHHHHHHHhCCCCCeECCCCcCc
Confidence 35444432 34445543 122244555421 355443 33555566554332 33455555543
No 181
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=50.49 E-value=9.8 Score=27.40 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=30.7
Q ss_pred CeEeec-CCCchhHHh-hCC--CCCccCCCCCCCccccc-ChhHHHHHhhhccCcc
Q psy17006 271 CNVVLL-HTEKPEHED-ACE--YRPYHCPCPGASCKWSG-ALDQVMGHLNQSHKTI 321 (446)
Q Consensus 271 C~~~~~-~~~l~~He~-~C~--~~~~~Cp~~~~~C~~~g-~~~~l~~H~~~~H~~~ 321 (446)
|...+. ...|..|+. .-. ..++.|+. |+... ....|..|++..|...
T Consensus 21 C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~~ 72 (77)
T 2ct1_A 21 CHARFTQSGTMKMHILQKHTENVAKFHCPH----CDTVIARKSDLGVHLRKQHSYS 72 (77)
T ss_dssp TCCEESCHHHHHHHHHHHSSSSCSSEECSS----SSCEESSHHHHHHHHHHTSCCS
T ss_pred cCchhCCHHHHHHHHHHhcCCCCCccCCCC----CCCccCCHHHHHHHHHHhCCCC
Confidence 554444 345667764 333 26788884 87764 5668999999998753
No 182
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=50.29 E-value=22 Score=26.54 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=28.1
Q ss_pred CceecccccCcC-cCccccccccceeccCcccCC-CCCCCCCC
Q psy17006 35 SLFECPVCFDYV-LPPIIQCQSGHLVCSNCRPKL-SCCSTCRG 75 (446)
Q Consensus 35 ~~l~C~iC~~~l-~~Pv~qC~~GH~~C~~C~~~~-~~CP~Cr~ 75 (446)
..-.|..|..-+ ..+ +.|.||..||+.=+-.- -.|+.+-+
T Consensus 24 ~~nRC~~CrKkvgL~g-f~CrCg~~FCs~HRy~e~H~C~fDyk 65 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTG-FDCRCGNLFCGLHRYSDKHNCPYDYK 65 (74)
T ss_dssp CTTBCSSSCCBCGGGC-EECTTSCEECSSSCSTTTTTCCCCGG
T ss_pred cCCcChhhCCcccccC-eecCCCCEechhcCCCccCCCcchhh
Confidence 345799998864 345 59999999998876542 46765543
No 183
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=49.50 E-value=7.3 Score=43.11 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=50.6
Q ss_pred cCCCCceecccccCcCcCcccccccc-ceeccCcccCC----CCCCCCCCCCcc---ccchHHHHHhhhcc
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQCQSG-HLVCSNCRPKL----SCCSTCRGPLGN---IRNLAMEKVAETVT 93 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~qC~~G-H~~C~~C~~~~----~~CP~Cr~~~~~---~~~~~~e~~~~~l~ 93 (446)
.++.+.|.|||=.++|.+||. -..| +++=+..++++ ..||.=|+++.. ++|.+++..|.++.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVi-lpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVI-LPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFK 955 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeE-cCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHH
Confidence 577889999999999999994 4456 68888888764 579998888863 68999999988764
No 184
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=49.29 E-value=3.5 Score=33.77 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=0.0
Q ss_pred eeccCcccccCcccCC----CCCCCCCCCCCc
Q psy17006 220 YCQSGHLVCSNCRPKL----SCCSTCRGPLGN 247 (446)
Q Consensus 220 ~C~~gh~~C~~C~~~~----~~Cp~Cr~~~~~ 247 (446)
.-+++|.++..|..+- ..||.||.++..
T Consensus 81 ~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 81 WGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp --------------------------------
T ss_pred cCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3478999999999872 589999998764
No 185
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=49.15 E-value=6.2 Score=32.64 Aligned_cols=52 Identities=29% Similarity=0.571 Sum_probs=34.1
Q ss_pred ccccccccCCCCeeeecC-CChhhHhhhC-CCccccCCCCCCCCcccc-ChhHHHHHHhhcCC
Q psy17006 92 VTFPCRYQMNGCNVVLLH-TEKPEHEDAC-EYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHK 151 (446)
Q Consensus 92 l~v~C~~~~~GC~~~~~~-~~~~~H~~~C-~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~ 151 (446)
-++.|+. |+..+.. ..|..|+..= .-+++.|+ .|+... ....|..|++..|.
T Consensus 49 k~~~C~~----C~k~F~~~~~L~~H~~~H~~~k~~~C~----~C~k~F~~~~~L~~H~~~hh~ 103 (133)
T 2lt7_A 49 KKYPCRY----CEKVFPLAEYRTKHEIHHTGERRYQCL----ACGKSFINYQFMSSHIKSVHS 103 (133)
T ss_dssp SCEECSS----SSCEESSHHHHHHHHHHHHTCCCEEES----SSCCEESSHHHHHHHHHHHTC
T ss_pred CCeeCCc----cCeecccccchhhhccccCCCccccCC----CCCCCcCCHHHHHHHhHHhcC
Confidence 3556664 7766654 4566776431 23567787 588775 56889999988774
No 186
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=49.10 E-value=6 Score=32.77 Aligned_cols=77 Identities=22% Similarity=0.433 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeecC-CCchhHHhhC-CCCCccCCCCCCCcccc-cChhHH
Q psy17006 236 SCCSTCRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLLH-TEKPEHEDAC-EYRPYHCPCPGASCKWS-GALDQV 310 (446)
Q Consensus 236 ~~Cp~Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~~-~~l~~He~~C-~~~~~~Cp~~~~~C~~~-g~~~~l 310 (446)
..|+.|...+....+ .|+..-...-++.|+. |+..+.. ..|..|+..- .-+|+.|+. |+.. .....|
T Consensus 23 y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L 94 (133)
T 2lt7_A 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRY----CEKVFPLAEYRTKHEIHHTGERRYQCLA----CGKSFINYQFM 94 (133)
T ss_dssp EEETTTCCEESCHHHHHHHHHHHHCCSCEECSS----SSCEESSHHHHHHHHHHHHTCCCEEESS----SCCEESSHHHH
T ss_pred eECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCc----cCeecccccchhhhccccCCCccccCCC----CCCCcCCHHHH
Confidence 367778777765443 3332223345677876 9988774 5788888642 356888984 8777 456789
Q ss_pred HHHhhhccCc
Q psy17006 311 MGHLNQSHKT 320 (446)
Q Consensus 311 ~~H~~~~H~~ 320 (446)
..|++..|..
T Consensus 95 ~~H~~~hh~~ 104 (133)
T 2lt7_A 95 SSHIKSVHSQ 104 (133)
T ss_dssp HHHHHHHTCC
T ss_pred HHHhHHhcCC
Confidence 9999998864
No 187
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=48.62 E-value=5.6 Score=36.79 Aligned_cols=43 Identities=19% Similarity=0.510 Sum_probs=32.8
Q ss_pred CceecccccCcCcCcccccc-ccceeccCcccCC------CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLPPIIQCQ-SGHLVCSNCRPKL------SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~-~GH~~C~~C~~~~------~~CP~Cr~~~~ 78 (446)
....|.+|.+++..-+ .|. |++.|=..|+.+. ..||.|+.+..
T Consensus 179 ~i~~C~iC~~iv~~g~-~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCE-ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCc-ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 4677999999999764 775 6777767787542 48999998765
No 188
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=48.20 E-value=14 Score=27.85 Aligned_cols=75 Identities=17% Similarity=0.436 Sum_probs=46.7
Q ss_pred CCCC--CCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeecC-CCchhHHh-hCCCCCccCCCCCCCccccc-ChhH
Q psy17006 237 CCST--CRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLLH-TEKPEHED-ACEYRPYHCPCPGASCKWSG-ALDQ 309 (446)
Q Consensus 237 ~Cp~--Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~~-~~l~~He~-~C~~~~~~Cp~~~~~C~~~g-~~~~ 309 (446)
.|+. |...+..... .|+..-...-++.|++ .+|...+.. ..|..|+. .-.-.++.|+. |+... ....
T Consensus 17 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~ 90 (100)
T 2ebt_A 17 YCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTW--EGCDWRFARSDELTRHYRKHTGAKPFQCGV----CNRSFSRSDH 90 (100)
T ss_dssp ECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCS--SSCCCEESSHHHHHHHHHHHTSCCSCBCSS----SCCBCSSHHH
T ss_pred EcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCC--CCCCCccCCHHHHHHHHHHhCCCCCeECCC----CcCccCCHHH
Confidence 4554 7766654333 3443333445677864 268887764 56778875 34557788885 76664 4668
Q ss_pred HHHHhhhc
Q psy17006 310 VMGHLNQS 317 (446)
Q Consensus 310 l~~H~~~~ 317 (446)
|..|++..
T Consensus 91 l~~H~~~H 98 (100)
T 2ebt_A 91 LALHMKRH 98 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88897653
No 189
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=48.10 E-value=8.2 Score=28.38 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=23.5
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCccc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRP 65 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~ 65 (446)
+..+.+.|.||+|...|.--. ..|..+|..|..
T Consensus 2 d~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (68)
T 2jr6_A 2 EKKFLDILVCPVTKGRLEYHQ---DKQELWSRQAKL 34 (68)
T ss_dssp CCSSSCCCBCSSSCCBCEEET---TTTEEEETTTTE
T ss_pred ChHHhhheECCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 356778999999998775432 237788877754
No 190
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=47.99 E-value=13 Score=23.81 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=19.5
Q ss_pred ccccCCCCCCCCccccChhHHHHHHhhcC
Q psy17006 122 RPYHCPCPGASCKWSGALDQVMGHLNQSH 150 (446)
Q Consensus 122 ~~v~Cp~~~~~C~~~~~~~~l~~H~~~~h 150 (446)
..+.||+ .-.-.+....|..|+..|.
T Consensus 4 ~~v~CPy---d~~H~i~~~~l~~Hl~kC~ 29 (37)
T 2vy4_A 4 EVVICPY---DSNHHMPKSSLAKHMASCR 29 (37)
T ss_dssp CCEECTT---TSSCEECGGGHHHHHHHHH
T ss_pred eEEECCC---CCCeEeCHHHHHHHHHHHh
Confidence 4567886 4677788888888887764
No 191
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=47.56 E-value=8.1 Score=28.32 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=24.6
Q ss_pred CccCCCCceecccccCcCcCccccccccceeccCccc
Q psy17006 29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRP 65 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~ 65 (446)
.+..+.+.|.||+|...|.--. ..|.++|..|..
T Consensus 3 md~~LLeiL~CP~ck~~L~~~~---~~g~LvC~~c~~ 36 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRYLE---SEQLLVNERLNL 36 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEEET---TTTEEEETTTTE
T ss_pred CCHHHHHHhCCCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 3567889999999999775332 247788887754
No 192
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=47.42 E-value=13 Score=25.57 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=24.0
Q ss_pred CccCCCCceecccccCcCcCccccccccceeccCcccC
Q psy17006 29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK 66 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 66 (446)
+.+..++...|+-|. .+.+|+ +++|..|+.-
T Consensus 4 ~~~~~eD~WkC~~C~-k~N~Pl------~ryC~rCwaL 34 (53)
T 2cr8_A 4 GSSGSEDEWQCTECK-KFNSPS------KRYCFRCWAL 34 (53)
T ss_dssp CSSCCSCCEECSSSC-CEECSS------CCBCTTTCCB
T ss_pred CcCCCcceeeccccc-ccCCCc------cchhHHHHHh
Confidence 345677889999999 677775 5678999874
No 193
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.36 E-value=13 Score=28.25 Aligned_cols=38 Identities=16% Similarity=0.375 Sum_probs=22.1
Q ss_pred ceecccccCcCcCccccccccceeccCcccCCCCCCCCCCCCc
Q psy17006 36 LFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCSTCRGPLG 78 (446)
Q Consensus 36 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~CP~Cr~~~~ 78 (446)
.-.|+.|...+...++. ..|..+=..|. .|..|+.++.
T Consensus 25 ~~~C~~C~~~I~~~~v~-a~~~~~H~~CF----~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLV-ALGKSWHPEEF----NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCSCEEE-ETTEEECTTTC----BCSSSCCBCS
T ss_pred CCCCccCCCEecceEEE-ECCccccccCC----ccCCCCCCCC
Confidence 34688888877655432 23555544554 4566666654
No 194
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=47.28 E-value=10 Score=29.60 Aligned_cols=71 Identities=18% Similarity=0.403 Sum_probs=41.8
Q ss_pred CCCCCCCcccc--HHHHHHHhhcccCcccCCCCCeEeec-CCCchhHHhh-CCCCCccCCCCCCCccccc-ChhHHHHHh
Q psy17006 240 TCRGPLGNIRN--LAMEKVAETVTFPCRYQMNGCNVVLL-HTEKPEHEDA-CEYRPYHCPCPGASCKWSG-ALDQVMGHL 314 (446)
Q Consensus 240 ~Cr~~~~~~r~--~~~e~~c~~~~~~C~~~~~GC~~~~~-~~~l~~He~~-C~~~~~~Cp~~~~~C~~~g-~~~~l~~H~ 314 (446)
.|...+..... .|+..-...-++.|+. |+..+. ...|..|+.. -.-.++.|+++ .|+... ....|..|+
T Consensus 43 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~L~~H~ 116 (119)
T 2jp9_A 43 DCERRFSRSDQLKRHQRRHTGVKPFQCKT----CQRKFSRSDHLKTHTRTHTGEKPFSCRWP--SCQKKFARSDELVRHH 116 (119)
T ss_dssp TCCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHHHHHHHHHTCCCEECCST--TCCCEESSHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHcCCCCCccCCc----cCchhCCHHHHHHHHHHhcCCCCeeCCCC--CCccccCCHHHHHHHH
Confidence 46655554332 3444434455677765 887766 4567777753 34567888433 376663 456788887
Q ss_pred hh
Q psy17006 315 NQ 316 (446)
Q Consensus 315 ~~ 316 (446)
+.
T Consensus 117 ~~ 118 (119)
T 2jp9_A 117 NM 118 (119)
T ss_dssp HT
T ss_pred hc
Confidence 53
No 195
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=47.01 E-value=21 Score=28.06 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=43.8
Q ss_pred ccccccccCCCCeeeecC-CChhhHhhhCCCccccCCCCCCCCcccc-ChhHHHHHHhhcCC-CcceecC--ccEEEE
Q psy17006 92 VTFPCRYQMNGCNVVLLH-TEKPEHEDACEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHK-TITTLQG--EDIVFL 164 (446)
Q Consensus 92 l~v~C~~~~~GC~~~~~~-~~~~~H~~~C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~-~~~~c~~--c~~~f~ 164 (446)
-.+.|+. .+|+..+.. ..|..|+..=.-+++.|+ .|+... ....|..|+...+. ....|.. |+..|.
T Consensus 4 ~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~ 75 (124)
T 1ubd_C 4 RTIACPH--KGCTKMFRDNSAMRKHLHTHGPRVHVCA----ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS 75 (124)
T ss_dssp -CEECCS--TTCCCEESSHHHHHHHHGGGSCCCEECT----TTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEES
T ss_pred CcccCCC--CCCcCccCCHHHHHHHHHHcCCCCeECC----CCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccC
Confidence 3566763 258877764 567788754455678887 488775 55789999876543 4567764 876653
No 196
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=46.94 E-value=8.3 Score=28.31 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=32.4
Q ss_pred CCceecccccCcCcCccccccccceecc-CcccCC--CCCCCCCCCC
Q psy17006 34 ASLFECPVCFDYVLPPIIQCQSGHLVCS-NCRPKL--SCCSTCRGPL 77 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~-~C~~~~--~~CP~Cr~~~ 77 (446)
.+-|.|..|...|..--+.-..|..+|. .|..+. +.|..|...+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 3568899999998763223356999999 698764 6888887654
No 197
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=45.43 E-value=6.4 Score=35.95 Aligned_cols=26 Identities=4% Similarity=-0.050 Sum_probs=9.7
Q ss_pred ccCcccCCCCCeEee-----cCCCchhHHhh
Q psy17006 261 TFPCRYQMNGCNVVL-----LHTEKPEHEDA 286 (446)
Q Consensus 261 ~~~C~~~~~GC~~~~-----~~~~l~~He~~ 286 (446)
.+.|||...||...+ +|.++++|+.+
T Consensus 9 ~i~c~~~~~gc~~~~~~~~~~r~~~~~h~~~ 39 (228)
T 1flk_A 9 SMKSSVESLQNRVTELESVDKSAGQVARNTG 39 (228)
T ss_dssp ---------------CTTTTTTTTTHHHHHH
T ss_pred heeccccccCceeeccccccchhHHHHHHHH
Confidence 468999999999999 99999999865
No 198
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=45.14 E-value=3.5 Score=33.11 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=23.1
Q ss_pred eeeccCcccccCcccC----CCCCCCCCCCCCc
Q psy17006 219 TYCQSGHLVCSNCRPK----LSCCSTCRGPLGN 247 (446)
Q Consensus 219 ~~C~~gh~~C~~C~~~----~~~Cp~Cr~~~~~ 247 (446)
..-+.+|.++..|..+ ...||.||.++..
T Consensus 69 ~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 69 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp EEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred eecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 3447899999999876 2589999998764
No 199
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=44.41 E-value=21 Score=27.49 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=23.2
Q ss_pred cccccccCCCCeeeecC-CChhhHhhh-CCCccccCCCCCCCCcccc-ChhHHHHHHhhcC
Q psy17006 93 TFPCRYQMNGCNVVLLH-TEKPEHEDA-CEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSH 150 (446)
Q Consensus 93 ~v~C~~~~~GC~~~~~~-~~~~~H~~~-C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h 150 (446)
.+.|+. |...+.. ..|..|+.. -.-.++.|+ .|+... ...+|..|++..|
T Consensus 37 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~----~C~~~f~~~~~l~~H~~~~~ 89 (110)
T 2csh_A 37 PYGCGV----CGKKFKMKHHLVGHMKIHTGIKPYECN----ICAKRFMWRDSFHRHVTSCT 89 (110)
T ss_dssp SEECTT----TSCEESSSHHHHHHHTTTCCCCCEECS----SSCCEESCHHHHHHHHHHHH
T ss_pred CccCCC----CCcccCCHHHHHHHHHHcCCCCCeeCC----CCcchhcCHHHHHHHHHHcc
Confidence 445553 5544443 344555532 122345555 255443 3355555555544
No 200
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=44.41 E-value=12 Score=26.28 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=18.7
Q ss_pred cCCCCCCCCCCCCccCCCCceecccccCc
Q psy17006 17 RHEPTHPSMCPGTSTDLASLFECPVCFDY 45 (446)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~~l~C~iC~~~ 45 (446)
.+.|+...-..+.-++|.+.+.||+|...
T Consensus 17 ~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 17 LGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp TCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 34444444444456788888999999763
No 201
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=43.55 E-value=9.5 Score=25.43 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=22.4
Q ss_pred CchhHHhh-CCCCCccCCCCCCCcccc-cChhHHHHHhhhccC
Q psy17006 279 EKPEHEDA-CEYRPYHCPCPGASCKWS-GALDQVMGHLNQSHK 319 (446)
Q Consensus 279 ~l~~He~~-C~~~~~~Cp~~~~~C~~~-g~~~~l~~H~~~~H~ 319 (446)
.|..|+.. -.-+|+.|+. |+.. .....|..|+...|+
T Consensus 19 ~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 19 YLNIHLRTHTGEKPYKCEF----CEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp HHHHHHHHHHCCCCEECSS----SSCEESSHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCCCcCCCC----CcchhCCHHHHHHHHHHhcC
Confidence 34445432 2245677774 7666 456688899887763
No 202
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=43.23 E-value=9.9 Score=29.39 Aligned_cols=43 Identities=21% Similarity=0.515 Sum_probs=32.4
Q ss_pred ceecccccCcCc-----Ccccccc-ccceeccCcccC-----CCCCCCCCCCCc
Q psy17006 36 LFECPVCFDYVL-----PPIIQCQ-SGHLVCSNCRPK-----LSCCSTCRGPLG 78 (446)
Q Consensus 36 ~l~C~iC~~~l~-----~Pv~qC~-~GH~~C~~C~~~-----~~~CP~Cr~~~~ 78 (446)
--.|.||.+-+- ++...|. |+-.+|+.|.+- ...||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 357999998863 3544664 688999999874 258999999875
No 203
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=42.48 E-value=7.1 Score=27.75 Aligned_cols=44 Identities=16% Similarity=0.316 Sum_probs=27.2
Q ss_pred CceecccccCcCcCcc-ccccccc---eeccCcccCC------CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLPPI-IQCQSGH---LVCSNCRPKL------SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv-~qC~~GH---~~C~~C~~~~------~~CP~Cr~~~~ 78 (446)
+.-.|.||++-..+|. ..|.|.+ .|=..|+.++ ..||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4457999987655554 3455422 3334566653 47999998764
No 204
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=41.96 E-value=8 Score=24.27 Aligned_cols=29 Identities=28% Similarity=0.684 Sum_probs=18.6
Q ss_pred ccccCcCcCccccccccceeccCcccCCCCC
Q psy17006 40 PVCFDYVLPPIIQCQSGHLVCSNCRPKLSCC 70 (446)
Q Consensus 40 ~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~C 70 (446)
|+|..+-..-- .| .|-.||+.|+.....|
T Consensus 6 ~~C~KPC~T~D-DC-S~gw~CqaC~nfa~TC 34 (38)
T 4cpa_I 6 PICNKPCKTHD-DC-SGAWFCQACWNSARTC 34 (38)
T ss_dssp TTTTCBCSSSS-SS-CCCSSCCEEETTTTEE
T ss_pred cccCCCccCcc-cc-ccchHHHHHHhhcccc
Confidence 45655544321 35 3889999999876554
No 205
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=41.90 E-value=14 Score=28.94 Aligned_cols=47 Identities=26% Similarity=0.566 Sum_probs=35.3
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCcccCC----CCCCCCCCCCc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLG 78 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~CP~Cr~~~~ 78 (446)
+..+-.-+.|..|-...+.=| .| +.|-.|..|++.+ ..||+|..++.
T Consensus 22 d~s~~G~~nCKsCWf~~k~LV-~C-~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFENKGLV-EC-NNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp SCCCSCCCCCCSSCSCCSSEE-EC-SSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred CccccCcccChhhccccCCee-ee-cchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 445556788998877666554 66 4899999998764 58999998774
No 206
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=41.88 E-value=17 Score=26.78 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=17.5
Q ss_pred cCCCCCCCCCCCCccCCCCceecccccCc
Q psy17006 17 RHEPTHPSMCPGTSTDLASLFECPVCFDY 45 (446)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~~l~C~iC~~~ 45 (446)
.+.|+...-+.+.-++|.+.+.||+|...
T Consensus 21 ~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 21 KGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp TCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred CCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 33444444333445677888888888763
No 207
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=41.57 E-value=15 Score=27.98 Aligned_cols=8 Identities=50% Similarity=1.265 Sum_probs=6.4
Q ss_pred Cceecccc
Q psy17006 35 SLFECPVC 42 (446)
Q Consensus 35 ~~l~C~iC 42 (446)
.++.|.+|
T Consensus 26 ~~y~C~vC 33 (81)
T 2kn9_A 26 KLFRCIQC 33 (81)
T ss_dssp CEEEETTT
T ss_pred ceEEeCCC
Confidence 57888888
No 208
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.53 E-value=20 Score=27.83 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=19.4
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHHhhcCC
Q psy17006 122 RPYHCPCPGASCKWSG-ALDQVMGHLNQSHK 151 (446)
Q Consensus 122 ~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~ 151 (446)
+++.|+ .|+... ...+|..|++..|.
T Consensus 79 ~~~~C~----~C~k~f~~~~~L~~H~~~hh~ 105 (115)
T 2dmi_A 79 KVLKCM----YCGHSFESLQDLSVHMIKTKH 105 (115)
T ss_dssp SSCBCS----SSCCBCSSHHHHHHHHHHTTT
T ss_pred cceECC----CCCCccCCHHHHHHHHHHhCC
Confidence 567787 487775 45889999987764
No 209
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=41.10 E-value=30 Score=23.06 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=19.9
Q ss_pred CeeeecC-CChhhHhhh-CCCccccCCCCCCCCcccc-ChhHHHHHHhhcC
Q psy17006 103 CNVVLLH-TEKPEHEDA-CEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSH 150 (446)
Q Consensus 103 C~~~~~~-~~~~~H~~~-C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h 150 (446)
|+..+.. ..|..|+.. -.-+++.|+ .|+... ....|..|++..|
T Consensus 8 C~~~f~~~~~l~~H~~~h~~~~~~~C~----~C~~~f~~~~~l~~H~~~~H 54 (60)
T 2adr_A 8 CTRAFARQEHLKRHYRSHTNEKPYPCG----LCNRAFTRRDLLIRHAQKIH 54 (60)
T ss_dssp TCCCBSCHHHHHHHHHTTTSSCSEECT----TTCCEESSHHHHHHHHTTTS
T ss_pred CccccCCHHHHHHHHHHhCCCCCccCC----CCCCccCCHHHHHHHHHHHc
Confidence 5544432 444555532 122345554 255443 3355555554444
No 210
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=41.06 E-value=35 Score=26.19 Aligned_cols=40 Identities=23% Similarity=0.494 Sum_probs=27.9
Q ss_pred CCCCceeccc--ccCcCcCcccccc-ccceeccCcccCC-CCCCC
Q psy17006 32 DLASLFECPV--CFDYVLPPIIQCQ-SGHLVCSNCRPKL-SCCST 72 (446)
Q Consensus 32 ~l~~~l~C~i--C~~~l~~Pv~qC~-~GH~~C~~C~~~~-~~CP~ 72 (446)
.......|+. |......|+ .|. ||..||..=+... -.|+.
T Consensus 21 ~~~~~~~C~~~~Ck~~~~l~f-~C~~C~~~FC~~HR~~e~H~C~~ 64 (86)
T 1wfe_A 21 DEHKSYSCSFKGCTDVELVAV-ICPYCEKNFCLRHRHQSDHDCEK 64 (86)
T ss_dssp SCSCCEECCSTTCCCEESSCE-ECTTTCCEECGGGCSTGGGTCSS
T ss_pred cCCCCCCCCCcCCCCCCccce-ECCCCCcccccccCCccCCCCCC
Confidence 3456688999 998877786 897 8999987543322 25653
No 211
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=39.50 E-value=22 Score=30.47 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=4.8
Q ss_pred hHHHHHhhhcc
Q psy17006 308 DQVMGHLNQSH 318 (446)
Q Consensus 308 ~~l~~H~~~~H 318 (446)
..|..|+...|
T Consensus 88 ~~l~~H~~~~h 98 (190)
T 1tf6_A 88 ANMKKHFNRFH 98 (190)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHhc
Confidence 34444444334
No 212
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=39.46 E-value=18 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.485 Sum_probs=21.9
Q ss_pred ecccccCcCcCc--ccccc-ccceeccCcccC
Q psy17006 38 ECPVCFDYVLPP--IIQCQ-SGHLVCSNCRPK 66 (446)
Q Consensus 38 ~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 66 (446)
.|.+|...+.-- ...|. ||.+||+.|...
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 799999877532 24675 699999999764
No 213
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=38.95 E-value=11 Score=26.09 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=16.5
Q ss_pred CCCCCCCCCCccCCCCceecccccC
Q psy17006 20 PTHPSMCPGTSTDLASLFECPVCFD 44 (446)
Q Consensus 20 ~~~~~~~~~~~~~l~~~l~C~iC~~ 44 (446)
|+...-..+.-++|.+.+.||+|..
T Consensus 19 p~~gi~pGt~f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 19 PDNGISPGTKFEDLPDDWVCPLCGA 43 (52)
T ss_dssp GGGTBCTTCCGGGSCTTCBCTTTCC
T ss_pred cccCcCCCCCHhHCCCCCcCCCCCC
Confidence 3333333344578888999999975
No 214
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.82 E-value=23 Score=25.78 Aligned_cols=37 Identities=16% Similarity=0.409 Sum_probs=26.3
Q ss_pred CceecccccCcCcCccccccccceeccCcccCC--CCCC
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCS 71 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~CP 71 (446)
+-|.|..|...|....+.-..|.++|..|..+. +.|.
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~ 72 (76)
T 1x68_A 34 ECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISG 72 (76)
T ss_dssp GGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSS
T ss_pred ccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCC
Confidence 458899999888754333356899999998775 4453
No 215
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=38.35 E-value=7.9 Score=22.53 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=13.0
Q ss_pred ccccccccCCCCeeeecCCChhhHhhhC
Q psy17006 92 VTFPCRYQMNGCNVVLLHTEKPEHEDAC 119 (446)
Q Consensus 92 l~v~C~~~~~GC~~~~~~~~~~~H~~~C 119 (446)
++|.||- |...++-..+.+|++.|
T Consensus 5 f~vqcpv----cqq~mpaahin~hldrc 28 (29)
T 3vhs_A 5 FQVQCPV----CQQMMPAAHINSHLDRC 28 (29)
T ss_dssp CEEECTT----TCCEEEGGGHHHHHHHH
T ss_pred eeeeChH----HHHhCcHHHHHHHHhcc
Confidence 4455553 55555555555555544
No 216
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=37.68 E-value=14 Score=27.26 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=23.2
Q ss_pred ccCCCCceecccccCcCcCccccccccceeccCccc
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRP 65 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~ 65 (446)
+..+.+.|.||+|...|.--. ..|..+|..|..
T Consensus 2 d~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (70)
T 2js4_A 2 ESRLLDILVCPVCKGRLEFQR---AQAELVCNADRL 34 (70)
T ss_dssp CCCCCCCCBCTTTCCBEEEET---TTTEEEETTTTE
T ss_pred ChHHhhheECCCCCCcCEEeC---CCCEEEcCCCCc
Confidence 356788999999999775332 236777777754
No 217
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=37.65 E-value=25 Score=31.66 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=25.9
Q ss_pred cCCCCceecccccCcCcCc--ccccc-ccceeccCcccC
Q psy17006 31 TDLASLFECPVCFDYVLPP--IIQCQ-SGHLVCSNCRPK 66 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 66 (446)
..+.+.-.|++|...+.-- -..|. ||+.||+.|...
T Consensus 156 ~~W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 156 PNWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred ccCCCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 3444556899999877532 24685 799999999764
No 218
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=37.42 E-value=13 Score=26.02 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=13.9
Q ss_pred CCccCCCCceecccccCc
Q psy17006 28 GTSTDLASLFECPVCFDY 45 (446)
Q Consensus 28 ~~~~~l~~~l~C~iC~~~ 45 (446)
+.-++|.+.+.||+|...
T Consensus 28 t~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 28 TDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CCGGGSCTTCBCTTTCCB
T ss_pred CChhHCCCCCcCcCCCCc
Confidence 445788888999999763
No 219
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=37.42 E-value=15 Score=30.31 Aligned_cols=30 Identities=23% Similarity=0.615 Sum_probs=22.8
Q ss_pred eecccccCcCcCc--ccccc-ccceeccCcccC
Q psy17006 37 FECPVCFDYVLPP--IIQCQ-SGHLVCSNCRPK 66 (446)
Q Consensus 37 l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 66 (446)
-.|.+|...+.-- -..|. ||++||+.|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4799998877532 24685 799999999765
No 220
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=37.10 E-value=27 Score=26.39 Aligned_cols=60 Identities=23% Similarity=0.509 Sum_probs=40.5
Q ss_pred cccceeeecc--CcccccCcccCCCCCCCCCCCCCccccHHHHHHHhhcccCcccCCCCCeEeecCCCchhHHhhCCCCC
Q psy17006 214 QAEHFTYCQS--GHLVCSNCRPKLSCCSTCRGPLGNIRNLAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRP 291 (446)
Q Consensus 214 ~~~~~~~C~~--gh~~C~~C~~~~~~Cp~Cr~~~~~~r~~~~e~~c~~~~~~C~~~~~GC~~~~~~~~l~~He~~C~~~~ 291 (446)
+..|+-|||. .|.+|=.|... .+++..+...+.||--
T Consensus 26 EdtHFVQCPsv~~HkFCFpCsr~-----------------sIk~q~~~~EvyCPSG------------------------ 64 (93)
T 2cs3_A 26 EDTHFVQCPSVPSHKFCFPCSRE-----------------SIKAQGATGEVYCPSG------------------------ 64 (93)
T ss_dssp SSTTSEECSSCSSCEECHHHHHH-----------------HHHHHHSSSCCCCTTS------------------------
T ss_pred ccCceeeCCCccCCeeeccccHH-----------------HHHhcCCCCcEECCCC------------------------
Confidence 4568888876 67777665542 4556677788888862
Q ss_pred ccCCCCCCCcccccChhHHHHHh
Q psy17006 292 YHCPCPGASCKWSGALDQVMGHL 314 (446)
Q Consensus 292 ~~Cp~~~~~C~~~g~~~~l~~H~ 314 (446)
-+||..+..=.|.....++..=+
T Consensus 65 ~kCpL~gS~~PWAFmqgEIatIL 87 (93)
T 2cs3_A 65 EKCPLVGSNVPWAFMQGEIATIL 87 (93)
T ss_dssp SCCBCSSSSSBCCCCHHHHHHHH
T ss_pred CccccCCCcCchHHHhhHHHHHh
Confidence 25787777677777776665543
No 221
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=37.04 E-value=35 Score=22.38 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=9.9
Q ss_pred hHHHHHHhhcCC-CcceecCccEEE
Q psy17006 140 DQVMGHLNQSHK-TITTLQGEDIVF 163 (446)
Q Consensus 140 ~~l~~H~~~~h~-~~~~c~~c~~~f 163 (446)
.+|..|+...+. ....|+.|+..|
T Consensus 15 ~~l~~H~~~h~~~~~~~C~~C~~~f 39 (57)
T 1bbo_A 15 SMLKKHIRTHTDVRPYHCTYCNFSF 39 (57)
T ss_dssp HHHHHHHHHTSSCCCEECSSSSCEE
T ss_pred HHHHHHHHhcCCCCCccCCCCCchh
Confidence 444455443222 233444444433
No 222
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.97 E-value=9.7 Score=30.94 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=32.5
Q ss_pred CceecccccCcCcC--ccccccccceeccCcccCC--C--CCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLP--PIIQCQSGHLVCSNCRPKL--S--CCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~--Pv~qC~~GH~~C~~C~~~~--~--~CP~Cr~~~~ 78 (446)
+-|.|..|...|.+ ..+.-..|..+|..|..+. + .|..|.++|.
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 44789999999863 2223346899999998763 4 8999998886
No 223
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=35.24 E-value=33 Score=24.10 Aligned_cols=37 Identities=19% Similarity=0.478 Sum_probs=24.5
Q ss_pred CccCCCCceecccccCcCcCccccccccceeccCcccCC
Q psy17006 29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL 67 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 67 (446)
..+.+.+.+.||.|...- -++.-..|-++|..|-..+
T Consensus 4 ~~~~ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 4 SRLDALPRVTCPNHPDAI--LVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CSCCCCSCCSBTTBSSSC--CEECSSSCCEECTTTCCEE
T ss_pred chhhccccccCcCCCCCc--eeEeCCCCeEEeCCCCCEE
Confidence 456788888999997621 1222234889999996543
No 224
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=35.24 E-value=19 Score=25.31 Aligned_cols=32 Identities=22% Similarity=0.623 Sum_probs=22.7
Q ss_pred CccCCCCceecccccCcCcCccccccccceecc--Cccc
Q psy17006 29 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCS--NCRP 65 (446)
Q Consensus 29 ~~~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~--~C~~ 65 (446)
.+..+.+.|.||+|...|..-. |...|. .|..
T Consensus 3 ~d~~lL~iL~CP~c~~~L~~~~-----~~L~C~~~~c~~ 36 (56)
T 2kpi_A 3 LEAGLLEILACPACHAPLEERD-----AELICTGQDCGL 36 (56)
T ss_dssp CCCSCTTSCCCSSSCSCEEEET-----TEEEECSSSCCC
T ss_pred CCHHHHhheeCCCCCCcceecC-----CEEEcCCcCCCc
Confidence 3567889999999999764321 677777 6643
No 225
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.16 E-value=76 Score=24.50 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=28.2
Q ss_pred ccCCCCceecccccCcCcCccccccc---c-ceeccCcccC--C----CCCCCCCCCC
Q psy17006 30 STDLASLFECPVCFDYVLPPIIQCQS---G-HLVCSNCRPK--L----SCCSTCRGPL 77 (446)
Q Consensus 30 ~~~l~~~l~C~iC~~~l~~Pv~qC~~---G-H~~C~~C~~~--~----~~CP~Cr~~~ 77 (446)
..+-.+...| +|..+-...+++|.. . ..|=..|+.- . -.||.|+...
T Consensus 30 ~~d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 30 PVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CcCCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 3444567788 999987666667752 2 2344455432 1 2688887643
No 226
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.03 E-value=24 Score=27.00 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=40.6
Q ss_pred hhhccccccccCCCCeeee--cCCChhhHhhhCCCccccCCCCCCCCcccc-ChhHHHHHHhhcCC
Q psy17006 89 AETVTFPCRYQMNGCNVVL--LHTEKPEHEDACEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHK 151 (446)
Q Consensus 89 ~~~l~v~C~~~~~GC~~~~--~~~~~~~H~~~C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~ 151 (446)
...-.+.|+. |...+ ....|..|+....-+++.|+ .|+... ....|..|+...|.
T Consensus 30 ~~~~~~~C~~----C~k~F~~~~~~L~~H~~~h~~k~~~C~----~Cgk~F~~~~~L~~H~~~~H~ 87 (96)
T 2ctd_A 30 VDKGSVSCPT----CQAVGRKTIEGLKKHMENCKQEMFTCH----HCGKQLRSLAGMKYHVMANHN 87 (96)
T ss_dssp HHTSCEECTT----TCSCEESSHHHHHHHHHHHCCCCCCCS----SSCCCCSSHHHHHHHHHHHTC
T ss_pred cCCCCcCCCC----CCCCcccCHHHHHHHHHHHCCCCeECC----CCCCeeCCHHHHHHHhHHhcC
Confidence 3456788986 99888 45788899865466788897 588776 45789999656664
No 227
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=34.90 E-value=25 Score=27.13 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=7.7
Q ss_pred CCceeccccc
Q psy17006 34 ASLFECPVCF 43 (446)
Q Consensus 34 ~~~l~C~iC~ 43 (446)
...+.|.+|.
T Consensus 33 m~~y~C~vCG 42 (87)
T 1s24_A 33 YLKWICITCG 42 (87)
T ss_dssp CCEEEETTTT
T ss_pred CceEECCCCC
Confidence 4678888885
No 228
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=34.89 E-value=13 Score=32.47 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=9.4
Q ss_pred ceecccccCcCcCc
Q psy17006 36 LFECPVCFDYVLPP 49 (446)
Q Consensus 36 ~l~C~iC~~~l~~P 49 (446)
.-.|..|..++...
T Consensus 60 ~~~C~~C~~~I~~~ 73 (182)
T 2jtn_A 60 IPMCAGCDQHILDR 73 (182)
T ss_dssp CCBCBTSSSBCCCS
T ss_pred CCcCccCCCCccCc
Confidence 45677777777654
No 229
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.68 E-value=13 Score=26.73 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=28.9
Q ss_pred CeEeec-CCCchhHHhhC----CCCCccCCCCCCCccccc-ChhHHHHHhhhccCcc
Q psy17006 271 CNVVLL-HTEKPEHEDAC----EYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHKTI 321 (446)
Q Consensus 271 C~~~~~-~~~l~~He~~C----~~~~~~Cp~~~~~C~~~g-~~~~l~~H~~~~H~~~ 321 (446)
|...+. ...|..|+..- .-.++.|+. |+... ....|..|++..|...
T Consensus 13 C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~----C~k~f~~~~~L~~H~~~~H~~~ 65 (78)
T 2d9h_A 13 CGFTCRQKASLNWHQRKHAETVAALRFPCEF----CGKRFEKPDSVAAHRSKSHPAL 65 (78)
T ss_dssp SCCEESSHHHHHHHHHHHHHHTTTCCEECTT----TCCEESSHHHHHHHHHHTSTTT
T ss_pred CCCeeCCHHHHHHHHHHhhccCCCcccCCCC----CCchhCCHHHHHHHHHHhCCCC
Confidence 444443 23445554322 256778874 77764 5668999999988764
No 230
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=34.22 E-value=13 Score=27.25 Aligned_cols=32 Identities=19% Similarity=0.492 Sum_probs=22.3
Q ss_pred cCCCCceecccccCcCcCccccccccceeccCccc
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRP 65 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~ 65 (446)
..+.+.|.||+|...|.--. ..|-.+|..|..
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (68)
T 2hf1_A 3 AKFLEILVCPLCKGPLVFDK---SKDELICKGDRL 34 (68)
T ss_dssp CCCEEECBCTTTCCBCEEET---TTTEEEETTTTE
T ss_pred hHHhhheECCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 46778899999998775332 236777777754
No 231
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=34.09 E-value=29 Score=26.61 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=22.1
Q ss_pred eecccccCcCcCc--ccccc-ccceeccCcccC
Q psy17006 37 FECPVCFDYVLPP--IIQCQ-SGHLVCSNCRPK 66 (446)
Q Consensus 37 l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 66 (446)
-.|.+|...+.-- -..|. ||.+||..|...
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4799998876432 24675 699999999764
No 232
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=33.80 E-value=14 Score=27.21 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=22.1
Q ss_pred cCCCCceecccccCcCcCccccccccceeccCccc
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRP 65 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~ 65 (446)
..+.+.|.||+|...|.--. ..|..+|..|..
T Consensus 3 ~~LLeiL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKLSA---DKTELISKGAGL 34 (69)
T ss_dssp CCGGGTCCCTTTCCCCEECT---TSSEEEETTTTE
T ss_pred hHHHhheeCCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 46778899999998775322 236777777754
No 233
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.59 E-value=23 Score=26.77 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=31.8
Q ss_pred CeEeec-CCCchhHHhh-CCCCCccCCCCCCCcccc-cChhHHHHHhhhccCc
Q psy17006 271 CNVVLL-HTEKPEHEDA-CEYRPYHCPCPGASCKWS-GALDQVMGHLNQSHKT 320 (446)
Q Consensus 271 C~~~~~-~~~l~~He~~-C~~~~~~Cp~~~~~C~~~-g~~~~l~~H~~~~H~~ 320 (446)
|+..|. ...|..|+.. -.-+|+.|+. |+.. .....|..|++..|..
T Consensus 34 Cgk~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~~H~~ 82 (85)
T 2lv2_A 34 CGESFASKGAQERHLRLLHAAQVFPCKY----CPATFYSSPGLTRHINKCHPS 82 (85)
T ss_dssp SCCEESSHHHHHHHHHTTSCSSSEECTT----SSCEESSHHHHHHHHHTTCTT
T ss_pred CCCCcCcHHHHhhhhhhccCCCccCCCC----CCCEeCCHHHHHHhCcccCcC
Confidence 555544 3467777753 3457888885 8777 4566899999988863
No 234
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=33.34 E-value=23 Score=26.69 Aligned_cols=31 Identities=23% Similarity=0.626 Sum_probs=22.9
Q ss_pred ceecccccCcCcCc--ccccc-ccceeccCcccC
Q psy17006 36 LFECPVCFDYVLPP--IIQCQ-SGHLVCSNCRPK 66 (446)
Q Consensus 36 ~l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 66 (446)
.-.|.+|...+.-- -..|. ||.+||+.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34699998877532 14675 699999999864
No 235
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.81 E-value=41 Score=23.31 Aligned_cols=17 Identities=12% Similarity=0.411 Sum_probs=7.3
Q ss_pred Ccccc-ChhHHHHHHhhc
Q psy17006 133 CKWSG-ALDQVMGHLNQS 149 (446)
Q Consensus 133 C~~~~-~~~~l~~H~~~~ 149 (446)
|+... ....|..|+...
T Consensus 43 C~~~f~~~~~L~~H~~~h 60 (70)
T 1x5w_A 43 CSFDTKQPSNLSKHMKKF 60 (70)
T ss_dssp SSCEESSHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHH
Confidence 44443 234445554433
No 236
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.32 E-value=37 Score=23.80 Aligned_cols=31 Identities=10% Similarity=-0.034 Sum_probs=13.8
Q ss_pred Ccccc-ChhHHHHHHhhcCC-CcceecCccEEE
Q psy17006 133 CKWSG-ALDQVMGHLNQSHK-TITTLQGEDIVF 163 (446)
Q Consensus 133 C~~~~-~~~~l~~H~~~~h~-~~~~c~~c~~~f 163 (446)
|+... ....|..|+...+. ....|..|+..|
T Consensus 20 C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f 52 (72)
T 1x6e_A 20 CGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52 (72)
T ss_dssp SCCEESSHHHHHHHHHGGGCSCCEECSSSCCEE
T ss_pred CCCccCCHHHHHHHHHhcCCCCCeECCCCCccc
Confidence 44443 33445555543322 334555555443
No 237
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.32 E-value=29 Score=26.55 Aligned_cols=57 Identities=18% Similarity=0.384 Sum_probs=40.9
Q ss_pred HHhhcccCcccCCCCCeEee--cCCCchhHHhhCCCCCccCCCCCCCccccc-ChhHHHHHhhhccCc
Q psy17006 256 VAETVTFPCRYQMNGCNVVL--LHTEKPEHEDACEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHKT 320 (446)
Q Consensus 256 ~c~~~~~~C~~~~~GC~~~~--~~~~l~~He~~C~~~~~~Cp~~~~~C~~~g-~~~~l~~H~~~~H~~ 320 (446)
....-++.|+. |...+ ....|..|+....-+++.|+. |+... ....|..|+...|..
T Consensus 29 ~~~~~~~~C~~----C~k~F~~~~~~L~~H~~~h~~k~~~C~~----Cgk~F~~~~~L~~H~~~~H~~ 88 (96)
T 2ctd_A 29 IVDKGSVSCPT----CQAVGRKTIEGLKKHMENCKQEMFTCHH----CGKQLRSLAGMKYHVMANHNS 88 (96)
T ss_dssp HHHTSCEECTT----TCSCEESSHHHHHHHHHHHCCCCCCCSS----SCCCCSSHHHHHHHHHHHTCC
T ss_pred hcCCCCcCCCC----CCCCcccCHHHHHHHHHHHCCCCeECCC----CCCeeCCHHHHHHHhHHhcCC
Confidence 34556678876 88888 467888898655667888884 77664 456899996667754
No 238
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.25 E-value=27 Score=25.50 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=29.3
Q ss_pred ceecccccCcCcCcc---ccccccceeccCcccCC-CCCCCCCC
Q psy17006 36 LFECPVCFDYVLPPI---IQCQSGHLVCSNCRPKL-SCCSTCRG 75 (446)
Q Consensus 36 ~l~C~iC~~~l~~Pv---~qC~~GH~~C~~C~~~~-~~CP~Cr~ 75 (446)
.-.|..|..-+.-+- +.|.||..||+.=+-.. -.|+.+-+
T Consensus 15 ~~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDyk 58 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHM 58 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCSS
T ss_pred CCcchhhCCeecccccCceEecCCCEehhccCCccccCCccccc
Confidence 357999999887762 58999999998876532 35766544
No 239
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=31.77 E-value=8.8 Score=31.39 Aligned_cols=44 Identities=16% Similarity=0.401 Sum_probs=31.7
Q ss_pred CCceecccccCcCcC---ccccccccceeccCcccCC--C--CCCCCCCCCc
Q psy17006 34 ASLFECPVCFDYVLP---PIIQCQSGHLVCSNCRPKL--S--CCSTCRGPLG 78 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~---Pv~qC~~GH~~C~~C~~~~--~--~CP~Cr~~~~ 78 (446)
.+-|.|..|...|.. +. .-..|..+|..|..+. + .|..|.+++.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCE-EEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeE-EEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 356888889888853 33 3356889999998764 4 7888888764
No 240
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.44 E-value=38 Score=22.94 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=22.3
Q ss_pred cccCCCCCCCCccccC-hhHHHHHHhhcCCCcc
Q psy17006 123 PYHCPCPGASCKWSGA-LDQVMGHLNQSHKTIT 154 (446)
Q Consensus 123 ~v~Cp~~~~~C~~~~~-~~~l~~H~~~~h~~~~ 154 (446)
...|| .|+.+.. ...|..|++.+|++++
T Consensus 12 ~~~CP----rCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 12 RKICP----RCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp CCCCT----TTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred ceeCC----cccccccchHHHHhhhhhcCcchh
Confidence 46788 5998876 6899999999987654
No 241
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.15 E-value=40 Score=25.40 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=22.5
Q ss_pred ceecccccCcCcCc--ccccc-ccceeccCcccC
Q psy17006 36 LFECPVCFDYVLPP--IIQCQ-SGHLVCSNCRPK 66 (446)
Q Consensus 36 ~l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 66 (446)
.-.|.+|...+.-- ...|. ||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 35799998877432 24675 699999999764
No 242
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=30.46 E-value=11 Score=33.17 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=27.8
Q ss_pred ccCcccccCcccCC----C-CCCCCCCCCCc---cccHHHHHHHhhc
Q psy17006 222 QSGHLVCSNCRPKL----S-CCSTCRGPLGN---IRNLAMEKVAETV 260 (446)
Q Consensus 222 ~~gh~~C~~C~~~~----~-~Cp~Cr~~~~~---~r~~~~e~~c~~~ 260 (446)
++||++|..|..+. . .||.|+.++.. +.|..+.+.+..+
T Consensus 123 ~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 123 PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 78999999997652 2 59999999874 3466665554443
No 243
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=29.88 E-value=31 Score=27.35 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=40.2
Q ss_pred HhhcccCcccCCCCCeEeecC-CCchhHHhhCCCCCccCCCCCCCccccc-ChhHHHHHhhhccCcc
Q psy17006 257 AETVTFPCRYQMNGCNVVLLH-TEKPEHEDACEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHKTI 321 (446)
Q Consensus 257 c~~~~~~C~~~~~GC~~~~~~-~~l~~He~~C~~~~~~Cp~~~~~C~~~g-~~~~l~~H~~~~H~~~ 321 (446)
-..-++.|+. |+..+.. ..|..|+..- -.|+.|+. |+... ....|..|.+..|.+.
T Consensus 70 ~~~~~~~C~~----C~k~f~~~~~l~~H~~~H-~~~~~C~~----C~k~f~~~~~l~~H~~~h~~~~ 127 (129)
T 2wbt_A 70 KAISQFVCPL----CLMPFSSSVSLKQHIRYT-EHTKVCPV----CKKEFTSTDSALDHVCKKHNIC 127 (129)
T ss_dssp HHHCSEECTT----TCCEESSHHHHHHHHHHT-CCCCBCTT----TCCBCSSHHHHHHHHHHTTCCC
T ss_pred CCCCCeECCC----CCcccCCHhHHHHHHHHC-CCCCCCCC----CCcccCCHHHHHHHHHHHCCcc
Confidence 3345677775 8877764 5678888654 67788885 77764 4668999999888764
No 244
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.46 E-value=27 Score=27.87 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=18.5
Q ss_pred CcCcccccc-ccceeccCcccCCCCCCCCCCCC
Q psy17006 46 VLPPIIQCQ-SGHLVCSNCRPKLSCCSTCRGPL 77 (446)
Q Consensus 46 l~~Pv~qC~-~GH~~C~~C~~~~~~CP~Cr~~~ 77 (446)
+..|. .|. ||..| ..=+.+...||.|+..-
T Consensus 64 ~v~p~-~C~~CG~~F-~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 64 LIKPA-QCRKCGFVF-KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp EECCC-BBTTTCCBC-CCCSSCCSSCSSSCCCC
T ss_pred EEECc-ChhhCcCee-cccCCCCCCCcCCCCCc
Confidence 34453 674 79999 22223346999999753
No 245
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.26 E-value=44 Score=25.12 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=28.2
Q ss_pred ccccccCCCCeeeecC-CChhhHhhh-CCCccccCCCCCCCCcccc-ChhHHHHHHhhcCC
Q psy17006 94 FPCRYQMNGCNVVLLH-TEKPEHEDA-CEYRPYHCPCPGASCKWSG-ALDQVMGHLNQSHK 151 (446)
Q Consensus 94 v~C~~~~~GC~~~~~~-~~~~~H~~~-C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~ 151 (446)
..|+. |+..+.. ..|..|+.. =.-+++.|+ .|+... ....|..|++..|.
T Consensus 29 h~C~~----Cgk~F~~~~~L~~H~~~H~~~k~~~C~----~C~k~F~~~~~L~~H~~~~H~ 81 (85)
T 2lv2_A 29 HLCPV----CGESFASKGAQERHLRLLHAAQVFPCK----YCPATFYSSPGLTRHINKCHP 81 (85)
T ss_dssp EECTT----SCCEESSHHHHHHHHHTTSCSSSEECT----TSSCEESSHHHHHHHHHTTCT
T ss_pred EECCC----CCCCcCcHHHHhhhhhhccCCCccCCC----CCCCEeCCHHHHHHhCcccCc
Confidence 34654 6666554 456666642 233566665 366664 44666667666664
No 246
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=28.93 E-value=15 Score=31.58 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=31.3
Q ss_pred CceecccccCcCcCccccccccceeccCcccCC--CCCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~CP~Cr~~~~ 78 (446)
+-|.|..|...|..-.+ -..|..+|..|..+. +.|..|.++|.
T Consensus 32 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccC
Confidence 55788888888865433 346888888887764 67888887764
No 247
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.16 E-value=61 Score=22.65 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=16.9
Q ss_pred CeeeecC-CChhhHhh-hCCCccccCCCCCCCCcccc-ChhHHHHHHh
Q psy17006 103 CNVVLLH-TEKPEHED-ACEYRPYHCPCPGASCKWSG-ALDQVMGHLN 147 (446)
Q Consensus 103 C~~~~~~-~~~~~H~~-~C~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~ 147 (446)
|+..+.. ..|..|+. .-.-+++.|+ .|+... ....|..|++
T Consensus 23 C~k~f~~~~~l~~H~~~H~~~~~~~C~----~C~k~f~~~~~L~~H~~ 66 (74)
T 2lce_A 23 CQASFRYKGNLASHKTVHTGEKPYRCN----ICGAQFNRPANLKTHTR 66 (74)
T ss_dssp SSCCBSCHHHHHHHHHHHCCCCSEECT----TTCCEESCHHHHHHHHH
T ss_pred CCceeCCHHHHHHHHHHcCCCCCEECC----CCCchhCCHHHHHHHHH
Confidence 5444432 33444542 1222344454 244443 2344555544
No 248
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.51 E-value=57 Score=23.86 Aligned_cols=33 Identities=24% Similarity=0.592 Sum_probs=20.7
Q ss_pred CceecccccCcCcCccccccccceeccCcccCC
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL 67 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 67 (446)
+=|.|..|...|..-.+.-..|.++|..|..++
T Consensus 42 ~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 42 GCFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp TTSBCTTTCCBCSSCCEEEETTEEEETTTSSCC
T ss_pred cCCeecCCCCccCCCccEeeCCEEECHHHHhhh
Confidence 456777777777643222345777777777653
No 249
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=26.76 E-value=41 Score=23.44 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=19.2
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHHhhcCC-CcceecCccEEE
Q psy17006 122 RPYHCPCPGASCKWSG-ALDQVMGHLNQSHK-TITTLQGEDIVF 163 (446)
Q Consensus 122 ~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~-~~~~c~~c~~~f 163 (446)
+++.|+.. .|+... ....|..|+...+. ....|+.|+..|
T Consensus 18 ~~~~C~~~--~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 59 (73)
T 1f2i_G 18 RPYACPVE--SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59 (73)
T ss_dssp CCEECSST--TBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred CccCCcCC--CCCCccCCHHHHHHHHHhhCCCCCeECCCCCchh
Confidence 34555421 355443 33556666554322 335566665544
No 250
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=26.56 E-value=66 Score=28.25 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=27.7
Q ss_pred ecccccCcCcCc-----ccccc-ccceeccCcccC---------------CCCCCCCCCCCc
Q psy17006 38 ECPVCFDYVLPP-----IIQCQ-SGHLVCSNCRPK---------------LSCCSTCRGPLG 78 (446)
Q Consensus 38 ~C~iC~~~l~~P-----v~qC~-~GH~~C~~C~~~---------------~~~CP~Cr~~~~ 78 (446)
.||+|..+..+. ++||. |...|=..|..- .-.||.|+..-.
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 499999987643 56885 565665566542 137999987544
No 251
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=26.36 E-value=15 Score=33.41 Aligned_cols=28 Identities=0% Similarity=-0.109 Sum_probs=9.2
Q ss_pred CCCccCCCCCCCccccc-----ChhHHHHHhhh
Q psy17006 289 YRPYHCPCPGASCKWSG-----ALDQVMGHLNQ 316 (446)
Q Consensus 289 ~~~~~Cp~~~~~C~~~g-----~~~~l~~H~~~ 316 (446)
...+.|||...||.+++ ++.+|.+|+..
T Consensus 7 ~~~i~c~~~~~gc~~~~~~~~~~r~~~~~h~~~ 39 (228)
T 1flk_A 7 ADSMKSSVESLQNRVTELESVDKSAGQVARNTG 39 (228)
T ss_dssp -----------------CTTTTTTTTTHHHHHH
T ss_pred hhheeccccccCceeeccccccchhHHHHHHHH
Confidence 35678999999999999 88888888875
No 252
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.30 E-value=64 Score=22.74 Aligned_cols=23 Identities=4% Similarity=-0.104 Sum_probs=9.2
Q ss_pred hHHHHHHhhcCC-CcceecCccEE
Q psy17006 140 DQVMGHLNQSHK-TITTLQGEDIV 162 (446)
Q Consensus 140 ~~l~~H~~~~h~-~~~~c~~c~~~ 162 (446)
.+|..|+...+. ....|..|+..
T Consensus 32 ~~l~~H~~~h~~~~~~~C~~C~~~ 55 (77)
T 2cot_A 32 SDLSKHRRTHTGEKPYKCDECGKA 55 (77)
T ss_dssp HHHHHHHTTTCCSCSEECSSSCCE
T ss_pred HHHHHHHHHcCCCcCeeCCCCCCc
Confidence 444444443221 23344444433
No 253
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.29 E-value=29 Score=22.90 Aligned_cols=37 Identities=30% Similarity=0.368 Sum_probs=24.6
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHHhhcCC--CcceecCccEE
Q psy17006 122 RPYHCPCPGASCKWSG-ALDQVMGHLNQSHK--TITTLQGEDIV 162 (446)
Q Consensus 122 ~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h~--~~~~c~~c~~~ 162 (446)
+++.|+ .|+... ....|..|++..|. ....|+.|+..
T Consensus 11 k~~~C~----~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~ 50 (54)
T 2eps_A 11 KPYICQ----SCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50 (54)
T ss_dssp CCEECS----SSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCS
T ss_pred CCeECC----CCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCC
Confidence 456676 477665 55788899875553 45678877654
No 254
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=26.12 E-value=31 Score=26.51 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=22.7
Q ss_pred ceecccccCcCcC--cccccc-ccceeccCcccC
Q psy17006 36 LFECPVCFDYVLP--PIIQCQ-SGHLVCSNCRPK 66 (446)
Q Consensus 36 ~l~C~iC~~~l~~--Pv~qC~-~GH~~C~~C~~~ 66 (446)
.-.|.+|...+.- -...|. ||++||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 3569999887642 224675 699999999875
No 255
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=26.04 E-value=31 Score=33.92 Aligned_cols=39 Identities=13% Similarity=0.298 Sum_probs=28.8
Q ss_pred CCceecccccCcCcC---cccccc-ccceeccCcccCCCCCCC
Q psy17006 34 ASLFECPVCFDYVLP---PIIQCQ-SGHLVCSNCRPKLSCCST 72 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~---Pv~qC~-~GH~~C~~C~~~~~~CP~ 72 (446)
...-.|..|...+.. .-++|. ||..+|+.|..+.+.|+.
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~~C~~ 397 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPPCGR 397 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSCCC--
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCCCCCC
Confidence 345679999998863 225786 899999999998875543
No 256
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=25.90 E-value=40 Score=23.89 Aligned_cols=47 Identities=19% Similarity=0.410 Sum_probs=28.6
Q ss_pred CCeEeecC-CCchhHHhh-C-------CCCCccCCCCCCCcccccC-hhHHHHHhhhcc
Q psy17006 270 GCNVVLLH-TEKPEHEDA-C-------EYRPYHCPCPGASCKWSGA-LDQVMGHLNQSH 318 (446)
Q Consensus 270 GC~~~~~~-~~l~~He~~-C-------~~~~~~Cp~~~~~C~~~g~-~~~l~~H~~~~H 318 (446)
+|...+.. .+|..|... = +-.++.|.-. +|++.+. ...|..|++..|
T Consensus 8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~--~C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWE--DCDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCS--SCCCEESSHHHHHHHHHHHC
T ss_pred CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCC--CCcCCCCChHHHHhhccccC
Confidence 56665553 346667531 1 1125667644 5887754 568999998876
No 257
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=25.39 E-value=32 Score=28.14 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=23.0
Q ss_pred eecccccCcCcCcc--cccc-ccceeccCcccC
Q psy17006 37 FECPVCFDYVLPPI--IQCQ-SGHLVCSNCRPK 66 (446)
Q Consensus 37 l~C~iC~~~l~~Pv--~qC~-~GH~~C~~C~~~ 66 (446)
-.|..|...+.--. ..|. ||.+||+.|...
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCC
Confidence 57999988875432 4675 799999999875
No 258
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.62 E-value=67 Score=25.00 Aligned_cols=50 Identities=22% Similarity=0.444 Sum_probs=27.0
Q ss_pred cccccccCCCCeeeecC-CChhhHhhh-C----CCccccCCCCCCCCcccc-ChhHHHHHHhhcC
Q psy17006 93 TFPCRYQMNGCNVVLLH-TEKPEHEDA-C----EYRPYHCPCPGASCKWSG-ALDQVMGHLNQSH 150 (446)
Q Consensus 93 ~v~C~~~~~GC~~~~~~-~~~~~H~~~-C----~~~~v~Cp~~~~~C~~~~-~~~~l~~H~~~~h 150 (446)
++.|+. |+..+.. ..|..|+.. = .-+++.|+ .|+... ....|..|....|
T Consensus 18 py~C~~----Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~----~Cgk~F~~~~~L~~H~~r~H 74 (102)
T 2ghf_A 18 GYECKY----CTFQTPDLNMFTFHVDSEHPNVVLNSSYVCV----ECNFLTKRYDALSEHNLKYH 74 (102)
T ss_dssp SEECSS----CSCEESCHHHHHHHHHHHCSSCCCSCCEEET----TTTEEESSTHHHHTHHHHTS
T ss_pred CcCCCC----CCCccCCHHHHHHHHHhhCCCCCCCCCcCCC----CCCcccCCHHHHHHHHHHhc
Confidence 455654 6666553 456667642 2 23456675 466664 3456677733334
No 259
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.55 E-value=42 Score=30.42 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=23.9
Q ss_pred CCceecccccCcCcCc--ccccc-ccceeccCcccC
Q psy17006 34 ASLFECPVCFDYVLPP--IIQCQ-SGHLVCSNCRPK 66 (446)
Q Consensus 34 ~~~l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 66 (446)
.+.-.|.+|...+.-- ...|. ||..||..|...
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 3445899998877532 24685 799999999764
No 260
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=24.19 E-value=48 Score=23.04 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=14.5
Q ss_pred Ccccc-ChhHHHHHHhhcC-CCcceecCccEEE
Q psy17006 133 CKWSG-ALDQVMGHLNQSH-KTITTLQGEDIVF 163 (446)
Q Consensus 133 C~~~~-~~~~l~~H~~~~h-~~~~~c~~c~~~f 163 (446)
|+... ....|..|+..-- ...-.|+.|+..|
T Consensus 10 C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F 42 (60)
T 4gzn_C 10 CGKTYRDASGLSRHRRAHLGYRPRSCPECGKCF 42 (60)
T ss_dssp TCCEESSHHHHHHHHHHHHTCCCEECTTTCCEE
T ss_pred CCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCc
Confidence 55543 3345555554311 2344555555544
No 261
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=23.77 E-value=27 Score=22.34 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=23.1
Q ss_pred ecCCCchhHHhhCCCCCccCCCCCCCccccc-ChhHHHHHhhh
Q psy17006 275 LLHTEKPEHEDACEYRPYHCPCPGASCKWSG-ALDQVMGHLNQ 316 (446)
Q Consensus 275 ~~~~~l~~He~~C~~~~~~Cp~~~~~C~~~g-~~~~l~~H~~~ 316 (446)
+++..+..|..--.-+|+.|+++ .|+... ....|..|.+.
T Consensus 2 ~~~~~~~~~~~H~~~k~~~C~~~--~C~k~F~~~~~L~~H~~~ 42 (47)
T 1ncs_A 2 LPRGSIDKYVKEMPDKTFECLFP--GCTKTFKRRYNIRSHIQT 42 (47)
T ss_dssp CCCSSGGGSCEEETTTEEECCCT--TCCCEECSSSSHHHHHHH
T ss_pred CChHHHHHHhccCCCCCeECCCC--CCCCccCCHHHHHHHHHH
Confidence 34455555544444567888654 376653 34568888764
No 262
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.46 E-value=20 Score=25.55 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=17.9
Q ss_pred CceecccccCcCcCccccccccceeccCcccC
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK 66 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 66 (446)
+-|.|..|...|....+.-..|..+|..|..+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCD 61 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHH
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHH
Confidence 44667777666644322223466777666654
No 263
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.22 E-value=25 Score=25.21 Aligned_cols=33 Identities=15% Similarity=0.489 Sum_probs=21.4
Q ss_pred CceecccccCcCcCccccccccceeccCcccCC
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL 67 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 67 (446)
+=|.|..|...|....+.-..|..+|..|..++
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 34 DCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred ccCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 457788888777643333345778888777653
No 264
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.13 E-value=18 Score=26.01 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=16.6
Q ss_pred CceecccccCcCcCccccccccceeccCcccC
Q psy17006 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK 66 (446)
Q Consensus 35 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 66 (446)
+=|.|..|...|....+.-..|..+|..|..+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVA 63 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHH
Confidence 34566666666643222223466666666544
No 265
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=22.55 E-value=55 Score=20.47 Aligned_cols=25 Identities=32% Similarity=0.752 Sum_probs=19.3
Q ss_pred ccCCCCCCCcccc-cChhHHHHHhhhccCc
Q psy17006 292 YHCPCPGASCKWS-GALDQVMGHLNQSHKT 320 (446)
Q Consensus 292 ~~Cp~~~~~C~~~-g~~~~l~~H~~~~H~~ 320 (446)
+.||. |... +...+|..|+++.|..
T Consensus 6 FiCP~----C~~~l~s~~~L~~Hye~~H~~ 31 (34)
T 3mjh_B 6 FICPQ----CMKSLGSADELFKHYEAVHDA 31 (34)
T ss_dssp EECTT----TCCEESSHHHHHHHHHHHTSS
T ss_pred cCCcH----HHHHcCCHHHHHHHHHhcccc
Confidence 45775 6444 7888999999999974
No 266
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=22.41 E-value=19 Score=27.16 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=18.2
Q ss_pred CCccccChhHHHHHHhhcCC-CcceecCccEEEEe
Q psy17006 132 SCKWSGALDQVMGHLNQSHK-TITTLQGEDIVFLA 165 (446)
Q Consensus 132 ~C~~~~~~~~l~~H~~~~h~-~~~~c~~c~~~f~~ 165 (446)
.|+.......|+.|+..|.. ...+|-.|...|..
T Consensus 15 ~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~ 49 (79)
T 1wjv_A 15 ACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWG 49 (79)
T ss_dssp SSCCEEETTHHHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred CCCCeeecccchhHHhhCCCCCcEEecccCCeeCC
Confidence 45555555566666554443 34555555555543
No 267
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.20 E-value=74 Score=22.65 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=7.6
Q ss_pred Ccccc-ChhHHHHHHhhcC
Q psy17006 133 CKWSG-ALDQVMGHLNQSH 150 (446)
Q Consensus 133 C~~~~-~~~~l~~H~~~~h 150 (446)
|+... ....|..|+...+
T Consensus 53 C~~~f~~~~~L~~H~~~h~ 71 (86)
T 1x6h_A 53 CGKTFTRRNTMARHADNCA 71 (86)
T ss_dssp SCCEESCHHHHHHHHHHCC
T ss_pred CCChhCCHHHHHHHHHHcc
Confidence 44433 3344444444433
No 268
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=21.92 E-value=10 Score=33.32 Aligned_cols=43 Identities=23% Similarity=0.520 Sum_probs=28.9
Q ss_pred CceecccccCcCcC---ccccccccceeccCcccCC--C--CCCCCCCCCc
Q psy17006 35 SLFECPVCFDYVLP---PIIQCQSGHLVCSNCRPKL--S--CCSTCRGPLG 78 (446)
Q Consensus 35 ~~l~C~iC~~~l~~---Pv~qC~~GH~~C~~C~~~~--~--~CP~Cr~~~~ 78 (446)
+-|.|..|...|.. +. .-..|..+|..|..+. + .|..|.+++.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~-~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEE-EEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceE-EEeCCccccccccccccccCCccccCCCccc
Confidence 45778888887764 43 3345788888887653 3 4888877664
No 269
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.90 E-value=67 Score=23.81 Aligned_cols=29 Identities=31% Similarity=0.607 Sum_probs=21.7
Q ss_pred CCCccCCCCCCCcccccC-hhHHHHHhhhccC
Q psy17006 289 YRPYHCPCPGASCKWSGA-LDQVMGHLNQSHK 319 (446)
Q Consensus 289 ~~~~~Cp~~~~~C~~~g~-~~~l~~H~~~~H~ 319 (446)
-+||.|+.+ +|+.... ...|..|++..|.
T Consensus 25 EKPYkC~~~--~CgKaFsr~s~L~~H~rriHT 54 (73)
T 1x3c_A 25 YRPYRCVHQ--GCFAAFTIQQNLILHYQAVHK 54 (73)
T ss_dssp SCSCBCCST--TCCCBCSSHHHHHHHHHHHSS
T ss_pred CCCeECCCC--CcChhHcCHHHHHHHhhhhCC
Confidence 478899865 4888854 5589999876675
No 270
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.76 E-value=27 Score=25.33 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=15.0
Q ss_pred ceecccccCcCcCccccccccceecc-CcccC
Q psy17006 36 LFECPVCFDYVLPPIIQCQSGHLVCS-NCRPK 66 (446)
Q Consensus 36 ~l~C~iC~~~l~~Pv~qC~~GH~~C~-~C~~~ 66 (446)
=|.|..|...|..-.+.-..|..+|. .|..+
T Consensus 36 CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 36 CLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 67 (76)
T ss_dssp TCBCSSSCCBCCTTSCEEETTEEECTTTHHHH
T ss_pred CCCCCCCCCccCCCceEeECCEEecchHHHHH
Confidence 35566666555432122234556665 45543
No 271
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=21.71 E-value=31 Score=20.62 Aligned_cols=15 Identities=33% Similarity=0.416 Sum_probs=10.0
Q ss_pred CceecccccCcCcCc
Q psy17006 35 SLFECPVCFDYVLPP 49 (446)
Q Consensus 35 ~~l~C~iC~~~l~~P 49 (446)
.++.||+|...+-++
T Consensus 2 ~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCEECTTSSCEESSH
T ss_pred CcccCccccccCcCh
Confidence 356777777766655
No 272
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=21.59 E-value=91 Score=17.09 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=15.5
Q ss_pred CccCCCCCCCcccc-cChhHHHHHhhhc
Q psy17006 291 PYHCPCPGASCKWS-GALDQVMGHLNQS 317 (446)
Q Consensus 291 ~~~Cp~~~~~C~~~-g~~~~l~~H~~~~ 317 (446)
|+.|+++ .|+.. .....|..|....
T Consensus 2 p~~C~~~--~C~k~f~~~~~L~~H~~~H 27 (31)
T 1sp2_A 2 PFMCTWS--YCGKRFTRSDELQRHKRTH 27 (31)
T ss_dssp CCBCCST--TCCCBCSSHHHHHHHHTTT
T ss_pred CcCCcCC--CCCcccCCHhHHHHHHHHh
Confidence 5667643 37666 3456788887653
No 273
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.34 E-value=47 Score=24.18 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=19.3
Q ss_pred cceeccCcccCC--CCCCCCCCCCc
Q psy17006 56 GHLVCSNCRPKL--SCCSTCRGPLG 78 (446)
Q Consensus 56 GH~~C~~C~~~~--~~CP~Cr~~~~ 78 (446)
|..+|..|..+. +.|+.|.+++.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~ 26 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT 26 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec
Confidence 678999999874 68999998875
No 274
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.25 E-value=24 Score=26.86 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=32.6
Q ss_pred cccCcccCCCCCeEeec--CCCchhHHhhCC--CCCccCCCCCCCccccc-ChhHHHHHhhhccCcc
Q psy17006 260 VTFPCRYQMNGCNVVLL--HTEKPEHEDACE--YRPYHCPCPGASCKWSG-ALDQVMGHLNQSHKTI 321 (446)
Q Consensus 260 ~~~~C~~~~~GC~~~~~--~~~l~~He~~C~--~~~~~Cp~~~~~C~~~g-~~~~l~~H~~~~H~~~ 321 (446)
-++.|+. |...+. ...|..|+.... -+++.|+. |+... ....|..|++..|...
T Consensus 23 ~~~~C~~----C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~----C~k~F~~~~~L~~H~~~h~~~k 81 (98)
T 2gqj_A 23 GEAVCPT----CNVVTRKTLVGLKKHMEVCQKLQDALKCQH----CRKQFKSKAGLNYHTMAEHSAK 81 (98)
T ss_dssp SCCCCTT----TCCCCSSCSHHHHHHHHHHHHHHHHHSCSS----SCCCCSCHHHHHHHHHHHSCSC
T ss_pred CCcCCCC----CCCChhhhHHHHHHHHHHHcCCCCCEECCC----CCCccCCHHHHHHHHHHHcCCC
Confidence 3455553 555553 345556654322 35677774 76664 4668999998888653
No 275
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=21.05 E-value=42 Score=22.53 Aligned_cols=29 Identities=28% Similarity=0.691 Sum_probs=21.6
Q ss_pred cCCCCceecccccCcCcCccccccccceeccCcccC
Q psy17006 31 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK 66 (446)
Q Consensus 31 ~~l~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 66 (446)
-++.+...|+-|. -+.+|. +++|..|+.-
T Consensus 8 i~~~D~WkC~~C~-~~N~Pl------~r~C~rCw~L 36 (46)
T 2c6a_A 8 ISLADYWKCTSCN-EMNPPL------PSHCNRCWAL 36 (46)
T ss_dssp SCGGGCEECTTTC-CEECSS------CSSCTTTCCC
T ss_pred cCccceEeccccc-ccCCCc------cchhhHHHhh
Confidence 3455889999999 667775 5678888863
No 276
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.18 E-value=23 Score=25.20 Aligned_cols=31 Identities=16% Similarity=0.429 Sum_probs=14.7
Q ss_pred ceecccccCcCcCccccccccceeccCcccC
Q psy17006 36 LFECPVCFDYVLPPIIQCQSGHLVCSNCRPK 66 (446)
Q Consensus 36 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 66 (446)
-|.|..|...|....+.-..|..+|..|..+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKN 61 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHH
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHH
Confidence 3555555555543222223355555555543
Done!