RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17006
(446 letters)
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 190
Score = 214 bits (547), Expect = 1e-68
Identities = 150/187 (80%), Positives = 164/187 (87%), Gaps = 1/187 (0%)
Query: 259 TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSH 318
+V FPC+Y +GC + L HTEK EHE+ CE+RPY CPCPGASCKW G+LD VM HL H
Sbjct: 1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60
Query: 319 KTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLI 377
K+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE DG Q FFAIVQLI
Sbjct: 61 KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 120
Query: 378 GSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAIMNSDCLVFDSNIAQLFADNKN 437
G+RKQAE+F YRLELNGHRRRLTWEATPRSIHEGIA+AIMNSDCLVFD++IAQLFA+N N
Sbjct: 121 GTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGN 180
Query: 438 LGINVTI 444
LGINVTI
Sbjct: 181 LGINVTI 187
Score = 144 bits (365), Expect = 7e-42
Identities = 99/131 (75%), Positives = 109/131 (83%), Gaps = 1/131 (0%)
Query: 91 TVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQSH 150
+V FPC+Y +GC + L HTEK EHE+ CE+RPY CPCPGASCKW G+LD VM HL H
Sbjct: 1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60
Query: 151 KTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEI-DGRQHFFAIVQLI 209
K+ITTLQGEDIVFLATDINL GAVDWVMMQSCFG HFMLVLEKQE DG Q FFAIVQLI
Sbjct: 61 KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 120
Query: 210 GSRKQAEHFTY 220
G+RKQAE+F Y
Sbjct: 121 GTRKQAENFAY 131
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 31.8 bits (72), Expect = 0.016
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 38 ECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCSTCRGPLGNIRN 82
CP+C + + H C C + C C+ P+ ++ +
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVH 55
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 32.1 bits (72), Expect = 0.027
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 32 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCSTCRGPLGN---IRNLAME 86
L L C C + + P+ H+ CSNC + C C P N ++
Sbjct: 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLD 77
Query: 87 KVAE 90
+ +
Sbjct: 78 SMIQ 81
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 31.4 bits (71), Expect = 0.038
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 32 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNC-----RPKLSCCSTCRGPL 77
C +C + P+ HL C C + S C +CR P
Sbjct: 19 HFVKSISCQICEHILADPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPC 68
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 31.2 bits (70), Expect = 0.066
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 32 DLASLFECPVCFDYVLPPIIQ------CQSGHLVCSNCRPKLSCCSTCRGPL 77
+ + ECP+C + + P+ C+ L N + S C C+ +
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 28.3 bits (63), Expect = 0.23
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 38 ECPVCFDYVLPPIIQCQSGHLVCSNC-RPKLSCCSTCRGPL 77
C C P + H +CS C C C+ P
Sbjct: 8 RCQQCQAEAKCPKL-LPCLHTLCSGCLEASGMQCPICQAPW 47
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 31.1 bits (69), Expect = 0.24
Identities = 33/288 (11%), Positives = 72/288 (25%), Gaps = 32/288 (11%)
Query: 149 SHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQHFFAIVQL 208
+ + + G+ + + DI A VD + ++ H+ F
Sbjct: 42 NKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNF 101
Query: 209 IGSRKQAEHFTYCQ------SGHLVCSNCRPKLSCCSTCRGPLGNIRN------------ 250
IG+ E S V + + GP
Sbjct: 102 IGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSS 161
Query: 251 --LAMEKVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALD 308
A + + + + + + + P + +G
Sbjct: 162 TKAASDLIVKA--WVRSFGVKATISNCSNNYGPYQ------HIEKFIPRQITNILAGIKP 213
Query: 309 QVMGHLNQSHKTITTLQGEDIVFLATDINLAGAVDWVMMQSCFGHHFMLVLEKQEIDGRQ 368
++ G I T V+ G + + +L L +++ +
Sbjct: 214 KLYGEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPK 273
Query: 369 HFFAIVQLIGSRKQAEHFTYRLELNGHRRRLTWEATPRSIHEGIASAI 416
+ V + + Y ++ + R L W EG+ I
Sbjct: 274 DAYDHV----TDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETI 317
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 27.3 bits (60), Expect = 0.97
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 35 SLFECPVCFDYVLPPIIQCQSGHLVCSNC-----RPKLSCCSTCRGPL 77
+ C +C + I GHL+C++C + C CR +
Sbjct: 22 TFQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 26.3 bits (57), Expect = 3.0
Identities = 8/74 (10%), Positives = 14/74 (18%), Gaps = 2/74 (2%)
Query: 87 KVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHL 146
K +TV C + + + +
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKI--LGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 147 NQSHKTITTLQGED 160
I L+ ED
Sbjct: 65 GNFPLIIKNLKIED 78
Score = 26.3 bits (57), Expect = 3.0
Identities = 8/74 (10%), Positives = 14/74 (18%), Gaps = 2/74 (2%)
Query: 255 KVAETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHL 314
K +TV C + + + +
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKI--LGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 315 NQSHKTITTLQGED 328
I L+ ED
Sbjct: 65 GNFPLIIKNLKIED 78
>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda
variable domain, VL-lambda {Human (Homo sapiens),
cluster 5 [TaxId: 9606]}
Length = 103
Score = 25.4 bits (55), Expect = 6.1
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 5/71 (7%)
Query: 90 ETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQS 149
+T C + +KP G ++S +
Sbjct: 14 QTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSG-----TTV 68
Query: 150 HKTITTLQGED 160
TI+ +Q ED
Sbjct: 69 TLTISGVQAED 79
Score = 25.4 bits (55), Expect = 6.1
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 5/71 (7%)
Query: 258 ETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQS 317
+T C + +KP G ++S +
Sbjct: 14 QTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSG-----TTV 68
Query: 318 HKTITTLQGED 328
TI+ +Q ED
Sbjct: 69 TLTISGVQAED 79
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 31
Score = 23.7 bits (51), Expect = 6.4
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 122 RPYHCPCPGASCKWSGALDQVMGHLNQSH 150
+PY C G S +S A D+ H N++H
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAK-HQNRTH 28
Score = 23.7 bits (51), Expect = 6.4
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 290 RPYHCPCPGASCKWSGALDQVMGHLNQSH 318
+PY C G S +S A D+ H N++H
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAK-HQNRTH 28
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 23.9 bits (51), Expect = 7.9
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 38 ECPVCFDYVLPP---IIQCQSGHLVCSNC-----RPKLSCCSTCRGPLGN 79
ECP+C + + C G+ +C C + C CR P
Sbjct: 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51
>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 4
[TaxId: 10090]}
Length = 107
Score = 25.1 bits (54), Expect = 9.7
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 90 ETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQS 149
E VT C+ N V + +KP G +++G+ L
Sbjct: 17 EAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTL--- 73
Query: 150 HKTITTLQGED 160
TI+++Q +D
Sbjct: 74 --TISSVQADD 82
Score = 25.1 bits (54), Expect = 9.7
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 258 ETVTFPCRYQMNGCNVVLLHTEKPEHEDACEYRPYHCPCPGASCKWSGALDQVMGHLNQS 317
E VT C+ N V + +KP G +++G+ L
Sbjct: 17 EAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTL--- 73
Query: 318 HKTITTLQGED 328
TI+++Q +D
Sbjct: 74 --TISSVQADD 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.136 0.447
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,721,152
Number of extensions: 83420
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 52
Length of query: 446
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,199,356
Effective search space: 429369448
Effective search space used: 429369448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.1 bits)