Query psy17007
Match_columns 165
No_of_seqs 166 out of 1889
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 19:23:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 3.6E-21 1.2E-25 122.9 7.3 68 39-106 11-78 (80)
2 2cra_A Homeobox protein HOX-B1 99.8 3.9E-21 1.3E-25 119.7 6.6 66 41-106 3-68 (70)
3 2djn_A Homeobox protein DLX-5; 99.8 7.3E-21 2.5E-25 118.5 6.3 66 41-106 3-68 (70)
4 2kt0_A Nanog, homeobox protein 99.8 2E-20 7E-25 120.5 8.5 67 39-105 16-82 (84)
5 2dmu_A Homeobox protein goosec 99.8 6.7E-21 2.3E-25 118.7 5.3 66 41-106 3-68 (70)
6 2da2_A Alpha-fetoprotein enhan 99.8 9.3E-21 3.2E-25 118.0 5.9 67 40-106 2-68 (70)
7 2da3_A Alpha-fetoprotein enhan 99.8 9.1E-21 3.1E-25 121.0 5.5 68 39-106 11-78 (80)
8 1wh5_A ZF-HD homeobox family p 99.8 4.2E-20 1.4E-24 117.8 8.4 61 42-102 14-78 (80)
9 2dms_A Homeobox protein OTX2; 99.8 1.9E-20 6.4E-25 119.6 6.4 68 41-108 3-70 (80)
10 2da1_A Alpha-fetoprotein enhan 99.8 9.7E-21 3.3E-25 117.9 4.7 65 41-105 3-67 (70)
11 1wh7_A ZF-HD homeobox family p 99.8 6.3E-20 2.2E-24 116.8 8.3 61 41-102 13-78 (80)
12 2e1o_A Homeobox protein PRH; D 99.8 2.1E-20 7.1E-25 116.4 4.9 64 42-105 4-67 (70)
13 2vi6_A Homeobox protein nanog; 99.8 1.9E-20 6.5E-25 113.9 4.7 60 44-103 2-61 (62)
14 1nk2_P Homeobox protein VND; h 99.8 3.9E-20 1.3E-24 117.3 4.8 64 40-103 4-67 (77)
15 1bw5_A ISL-1HD, insulin gene e 99.8 6E-20 2.1E-24 113.0 5.0 61 44-104 2-62 (66)
16 2l7z_A Homeobox protein HOX-A1 99.8 1E-19 3.6E-24 114.1 6.0 63 43-105 5-67 (73)
17 1puf_A HOX-1.7, homeobox prote 99.8 7.1E-20 2.4E-24 116.0 5.2 63 41-103 9-71 (77)
18 2dmq_A LIM/homeobox protein LH 99.8 4.9E-20 1.7E-24 117.6 4.4 63 42-104 4-66 (80)
19 2cue_A Paired box protein PAX6 99.8 4.5E-20 1.5E-24 117.8 4.2 62 42-103 4-65 (80)
20 1akh_A Protein (mating-type pr 99.8 3.9E-20 1.3E-24 112.2 3.7 60 42-101 2-61 (61)
21 2h1k_A IPF-1, pancreatic and d 99.8 3.5E-20 1.2E-24 113.1 3.3 60 44-103 2-61 (63)
22 1ig7_A Homeotic protein MSX-1; 99.8 4.8E-20 1.7E-24 110.6 3.8 57 46-102 1-57 (58)
23 2hdd_A Protein (engrailed home 99.8 4.3E-20 1.5E-24 112.0 3.5 58 45-102 3-60 (61)
24 1ahd_P Antennapedia protein mu 99.8 4.4E-20 1.5E-24 114.3 3.4 63 45-107 2-64 (68)
25 1b8i_A Ultrabithorax, protein 99.8 8.6E-20 2.9E-24 116.7 4.5 62 42-103 17-78 (81)
26 2da4_A Hypothetical protein DK 99.8 4.4E-20 1.5E-24 117.9 3.0 64 41-104 4-71 (80)
27 3a01_A Homeodomain-containing 99.8 1.7E-19 6E-24 118.2 5.4 64 41-104 13-76 (93)
28 2m0c_A Homeobox protein arista 99.8 2.9E-19 1E-23 112.6 6.0 65 41-105 5-69 (75)
29 2da5_A Zinc fingers and homeob 99.8 4.4E-19 1.5E-23 111.8 6.7 60 47-106 9-68 (75)
30 1ftt_A TTF-1 HD, thyroid trans 99.8 2E-19 6.8E-24 111.3 4.8 61 45-105 2-62 (68)
31 3rkq_A Homeobox protein NKX-2. 99.8 1.6E-19 5.5E-24 108.3 4.1 57 45-101 2-58 (58)
32 2r5y_A Homeotic protein sex co 99.8 1.7E-19 5.7E-24 117.1 4.5 62 42-103 25-86 (88)
33 1jgg_A Segmentation protein EV 99.8 1.4E-19 4.6E-24 109.4 3.7 57 46-102 2-58 (60)
34 2k40_A Homeobox expressed in E 99.8 2E-19 6.8E-24 111.0 4.5 61 45-105 1-61 (67)
35 1yz8_P Pituitary homeobox 2; D 99.8 5.9E-20 2E-24 113.7 1.5 61 44-104 2-62 (68)
36 1zq3_P PRD-4, homeotic bicoid 99.8 1.4E-19 4.7E-24 112.1 3.2 60 45-104 2-61 (68)
37 1wi3_A DNA-binding protein SAT 99.8 4.7E-19 1.6E-23 107.1 5.3 61 41-101 3-64 (71)
38 2dn0_A Zinc fingers and homeob 99.8 6.2E-19 2.1E-23 111.4 6.1 61 46-106 9-69 (76)
39 1fjl_A Paired protein; DNA-bin 99.8 2.1E-19 7.2E-24 114.9 3.9 62 41-102 14-75 (81)
40 1uhs_A HOP, homeodomain only p 99.8 3.1E-19 1.1E-23 111.7 4.0 62 46-107 2-64 (72)
41 3nar_A ZHX1, zinc fingers and 99.8 3.5E-19 1.2E-23 117.4 4.3 63 41-103 21-83 (96)
42 1x2n_A Homeobox protein pknox1 99.8 8.3E-19 2.8E-23 110.0 5.3 63 41-103 3-68 (73)
43 2hi3_A Homeodomain-only protei 99.8 5.2E-19 1.8E-23 110.9 4.3 62 46-107 3-65 (73)
44 2ly9_A Zinc fingers and homeob 99.8 1.2E-18 4E-23 109.6 6.0 62 45-106 6-67 (74)
45 1du6_A PBX1, homeobox protein 99.8 9.4E-19 3.2E-23 107.0 5.2 59 44-102 2-63 (64)
46 3a02_A Homeobox protein arista 99.8 4E-19 1.4E-23 107.3 3.5 56 48-103 2-57 (60)
47 2ecc_A Homeobox and leucine zi 99.8 4.5E-19 1.5E-23 111.1 3.7 58 47-104 5-62 (76)
48 2cuf_A FLJ21616 protein; homeo 99.8 5.6E-19 1.9E-23 116.2 4.3 65 41-105 3-82 (95)
49 3a03_A T-cell leukemia homeobo 99.7 5.2E-19 1.8E-23 105.3 2.7 53 50-102 2-54 (56)
50 1b72_A Protein (homeobox prote 99.7 6.5E-19 2.2E-23 116.3 2.7 62 43-104 32-93 (97)
51 1lfb_A Liver transcription fac 99.7 3.5E-18 1.2E-22 112.8 4.5 64 41-104 5-89 (99)
52 1puf_B PRE-B-cell leukemia tra 99.7 3.8E-18 1.3E-22 107.0 4.3 60 46-105 2-64 (73)
53 2dmn_A Homeobox protein TGIF2L 99.7 7.9E-18 2.7E-22 108.0 5.8 62 42-103 4-68 (83)
54 1k61_A Mating-type protein alp 99.7 4.3E-18 1.5E-22 102.7 4.1 54 49-102 2-58 (60)
55 2cqx_A LAG1 longevity assuranc 99.7 1.5E-18 5.2E-23 108.3 1.8 60 45-104 8-68 (72)
56 2xsd_C POU domain, class 3, tr 99.7 3.8E-18 1.3E-22 122.7 4.0 66 41-106 95-160 (164)
57 2da6_A Hepatocyte nuclear fact 99.7 5.2E-18 1.8E-22 111.7 4.1 63 41-103 2-85 (102)
58 1au7_A Protein PIT-1, GHF-1; c 99.7 6E-18 2E-22 119.5 4.6 64 40-103 82-145 (146)
59 1mnm_C Protein (MAT alpha-2 tr 99.7 6.1E-18 2.1E-22 109.5 4.0 59 43-101 25-86 (87)
60 2e19_A Transcription factor 8; 99.7 1.5E-17 5.3E-22 101.4 5.5 55 50-104 8-62 (64)
61 2dmp_A Zinc fingers and homeob 99.7 3.8E-17 1.3E-21 106.1 7.6 57 51-107 19-75 (89)
62 1e3o_C Octamer-binding transcr 99.7 6.5E-18 2.2E-22 121.1 4.2 61 43-103 99-159 (160)
63 3d1n_I POU domain, class 6, tr 99.7 1E-17 3.4E-22 119.1 5.1 63 40-102 88-150 (151)
64 2l9r_A Homeobox protein NKX-3. 99.7 1.9E-17 6.4E-22 102.3 5.1 56 50-105 9-64 (69)
65 2ecb_A Zinc fingers and homeob 99.7 2E-17 6.8E-22 107.0 5.2 54 51-104 17-70 (89)
66 1le8_B Mating-type protein alp 99.7 1.7E-17 5.7E-22 106.5 4.6 59 46-104 3-64 (83)
67 1b72_B Protein (PBX1); homeodo 99.7 9.7E-18 3.3E-22 108.5 3.4 59 46-104 2-63 (87)
68 3nau_A Zinc fingers and homeob 99.7 7.3E-18 2.5E-22 102.1 2.5 50 53-102 12-61 (66)
69 1x2m_A LAG1 longevity assuranc 99.7 2.1E-17 7.2E-22 100.2 3.6 52 54-105 9-61 (64)
70 2d5v_A Hepatocyte nuclear fact 99.7 6.4E-17 2.2E-21 116.4 4.9 65 41-105 93-157 (164)
71 3l1p_A POU domain, class 5, tr 99.6 4.1E-17 1.4E-21 116.3 2.9 61 43-103 94-154 (155)
72 3k2a_A Homeobox protein MEIS2; 99.6 9.4E-16 3.2E-20 94.3 3.1 54 50-103 3-59 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 7.6E-16 2.6E-20 113.0 2.3 62 41-102 111-193 (194)
74 2da7_A Zinc finger homeobox pr 99.5 2.4E-15 8.3E-20 91.5 3.5 47 54-100 14-60 (71)
75 2h8r_A Hepatocyte nuclear fact 99.5 8.6E-15 2.9E-19 108.7 5.3 62 39-100 136-218 (221)
76 2lk2_A Homeobox protein TGIF1; 99.4 1.3E-13 4.5E-18 88.5 2.9 53 50-102 10-65 (89)
77 1b72_A Protein (homeobox prote 99.4 2.4E-13 8.4E-18 89.4 3.6 79 81-163 2-80 (97)
78 1mh3_A Maltose binding-A1 home 99.3 1.7E-12 5.8E-17 104.8 4.6 56 46-101 366-421 (421)
79 2cra_A Homeobox protein HOX-B1 99.1 5E-11 1.7E-15 73.6 4.1 50 114-163 4-53 (70)
80 2djn_A Homeobox protein DLX-5; 99.1 7E-11 2.4E-15 73.0 4.4 50 114-163 4-53 (70)
81 2da3_A Alpha-fetoprotein enhan 99.1 1E-10 3.4E-15 74.1 5.1 53 111-163 11-63 (80)
82 2dmt_A Homeobox protein BARH-l 99.1 8.2E-11 2.8E-15 74.5 4.5 53 111-163 11-63 (80)
83 2da2_A Alpha-fetoprotein enhan 99.1 8.2E-11 2.8E-15 72.6 4.1 50 114-163 4-53 (70)
84 2dmu_A Homeobox protein goosec 99.1 6.9E-11 2.4E-15 73.0 3.8 49 115-163 5-53 (70)
85 1puf_A HOX-1.7, homeobox prote 99.1 1E-10 3.6E-15 73.5 4.5 54 110-163 6-59 (77)
86 1wh5_A ZF-HD homeobox family p 99.1 1.3E-10 4.3E-15 73.7 4.8 50 114-163 14-67 (80)
87 2ecc_A Homeobox and leucine zi 99.1 6.6E-11 2.3E-15 73.9 3.4 44 119-162 5-48 (76)
88 1wi3_A DNA-binding protein SAT 99.1 1.3E-10 4.4E-15 70.3 4.4 50 115-164 5-55 (71)
89 1ig7_A Homeotic protein MSX-1; 99.1 7.8E-11 2.7E-15 70.0 3.5 46 118-163 1-46 (58)
90 1nk2_P Homeobox protein VND; h 99.1 1.4E-10 4.8E-15 72.9 4.3 51 113-163 5-55 (77)
91 2hdd_A Protein (engrailed home 99.1 7.8E-11 2.7E-15 70.8 2.9 47 117-163 3-49 (61)
92 2da1_A Alpha-fetoprotein enhan 99.0 7.4E-11 2.5E-15 72.8 2.8 50 114-163 4-53 (70)
93 2h1k_A IPF-1, pancreatic and d 99.0 9.9E-11 3.4E-15 70.8 3.1 47 117-163 3-49 (63)
94 2e1o_A Homeobox protein PRH; D 99.0 1.7E-10 5.7E-15 71.2 4.1 48 116-163 6-53 (70)
95 2cue_A Paired box protein PAX6 99.0 2E-10 6.7E-15 72.8 4.5 49 115-163 5-53 (80)
96 1wh7_A ZF-HD homeobox family p 99.0 1.8E-10 6.1E-15 72.9 4.2 50 113-163 13-67 (80)
97 2kt0_A Nanog, homeobox protein 99.0 2.4E-10 8.3E-15 72.9 4.9 52 112-163 17-68 (84)
98 1bw5_A ISL-1HD, insulin gene e 99.0 1.2E-10 4.2E-15 71.0 3.4 48 116-163 2-49 (66)
99 2dms_A Homeobox protein OTX2; 99.0 1.7E-10 5.7E-15 73.1 4.1 49 115-163 5-53 (80)
100 2vi6_A Homeobox protein nanog; 99.0 9.8E-11 3.3E-15 70.6 2.8 47 117-163 3-49 (62)
101 1jgg_A Segmentation protein EV 99.0 1.2E-10 3.9E-15 69.8 3.0 46 118-163 2-47 (60)
102 2dmq_A LIM/homeobox protein LH 99.0 1.9E-10 6.4E-15 72.8 4.1 49 115-163 5-53 (80)
103 1akh_A Protein (mating-type pr 99.0 1.1E-10 3.7E-15 70.1 2.6 48 116-163 4-51 (61)
104 1zq3_P PRD-4, homeotic bicoid 99.0 1.9E-10 6.5E-15 70.6 3.7 47 117-163 2-48 (68)
105 2l7z_A Homeobox protein HOX-A1 99.0 1.7E-10 5.8E-15 71.8 3.3 49 115-163 5-53 (73)
106 3rkq_A Homeobox protein NKX-2. 99.0 2.6E-10 8.9E-15 67.6 3.7 46 118-163 3-48 (58)
107 2k40_A Homeobox expressed in E 99.0 2.9E-10 1E-14 69.5 3.6 46 118-163 2-47 (67)
108 2r5y_A Homeotic protein sex co 99.0 3.7E-10 1.3E-14 72.8 4.1 50 114-163 25-74 (88)
109 3a02_A Homeobox protein arista 99.0 2.4E-10 8.1E-15 68.4 2.7 44 120-163 2-45 (60)
110 1ftt_A TTF-1 HD, thyroid trans 99.0 3.1E-10 1E-14 69.7 3.2 47 117-163 2-48 (68)
111 1ahd_P Antennapedia protein mu 99.0 2E-10 6.8E-15 70.5 2.2 46 118-163 3-48 (68)
112 2m0c_A Homeobox protein arista 99.0 4.7E-10 1.6E-14 70.0 4.0 50 114-163 6-55 (75)
113 1fjl_A Paired protein; DNA-bin 99.0 3.6E-10 1.2E-14 71.7 3.3 50 114-163 15-64 (81)
114 2da5_A Zinc fingers and homeob 98.9 5.3E-10 1.8E-14 69.9 3.8 46 118-163 8-53 (75)
115 3a01_A Homeodomain-containing 98.9 6.7E-10 2.3E-14 72.3 4.4 51 113-163 13-63 (93)
116 2dn0_A Zinc fingers and homeob 98.9 4.2E-10 1.4E-14 70.5 3.2 47 117-163 8-54 (76)
117 2da4_A Hypothetical protein DK 98.9 2.6E-10 9E-15 72.2 2.2 50 114-163 5-58 (80)
118 3a03_A T-cell leukemia homeobo 98.9 4.1E-10 1.4E-14 66.4 2.7 42 122-163 2-43 (56)
119 1yz8_P Pituitary homeobox 2; D 98.9 2.1E-10 7.3E-15 70.3 1.4 47 117-163 3-49 (68)
120 1b8i_A Ultrabithorax, protein 98.9 4.9E-10 1.7E-14 71.1 3.1 49 115-163 18-66 (81)
121 1uhs_A HOP, homeodomain only p 98.9 7.4E-10 2.5E-14 68.7 3.5 46 118-163 2-48 (72)
122 1du6_A PBX1, homeobox protein 98.9 1.2E-09 4.3E-14 66.0 4.2 47 117-163 3-52 (64)
123 2hi3_A Homeodomain-only protei 98.9 8E-10 2.7E-14 68.7 3.3 46 118-163 3-49 (73)
124 2ly9_A Zinc fingers and homeob 98.9 1.1E-09 3.9E-14 68.1 3.7 47 117-163 6-52 (74)
125 1x2n_A Homeobox protein pknox1 98.9 1.7E-09 5.7E-14 67.2 3.7 49 115-163 5-56 (73)
126 3nar_A ZHX1, zinc fingers and 98.9 1.2E-09 4E-14 71.5 3.1 51 113-163 21-71 (96)
127 1k61_A Mating-type protein alp 98.8 1.8E-09 6E-14 64.5 3.0 43 121-163 2-47 (60)
128 2cqx_A LAG1 longevity assuranc 98.8 4.6E-09 1.6E-13 65.1 4.9 46 118-163 9-55 (72)
129 3nau_A Zinc fingers and homeob 98.8 1.9E-09 6.6E-14 65.1 2.7 40 124-163 11-50 (66)
130 1puf_B PRE-B-cell leukemia tra 98.8 2.9E-09 9.8E-14 66.1 3.6 46 118-163 2-50 (73)
131 2ecb_A Zinc fingers and homeob 98.8 5.7E-09 1.9E-13 67.2 4.5 41 123-163 17-57 (89)
132 2dmp_A Zinc fingers and homeob 98.8 7.2E-09 2.5E-13 66.8 4.5 43 121-163 17-59 (89)
133 2cuf_A FLJ21616 protein; homeo 98.8 3.9E-09 1.3E-13 68.9 3.1 49 115-163 5-68 (95)
134 2dmn_A Homeobox protein TGIF2L 98.7 6.7E-09 2.3E-13 66.1 3.7 49 115-163 5-56 (83)
135 1b72_B Protein (PBX1); homeodo 98.7 6.4E-09 2.2E-13 66.7 3.4 46 118-163 2-50 (87)
136 2e19_A Transcription factor 8; 98.7 7.2E-09 2.4E-13 62.7 3.4 43 121-163 7-49 (64)
137 2da6_A Hepatocyte nuclear fact 98.7 9.3E-09 3.2E-13 67.5 4.1 49 115-163 4-73 (102)
138 1mnm_C Protein (MAT alpha-2 tr 98.7 6.9E-09 2.4E-13 66.6 3.3 49 115-163 25-76 (87)
139 1lfb_A Liver transcription fac 98.7 8.5E-09 2.9E-13 67.7 3.3 49 115-163 7-76 (99)
140 1au7_A Protein PIT-1, GHF-1; c 98.7 1.1E-08 3.8E-13 71.9 3.1 51 113-163 83-133 (146)
141 3d1n_I POU domain, class 6, tr 98.7 1.5E-08 5.1E-13 71.6 3.7 50 114-163 90-139 (151)
142 1le8_B Mating-type protein alp 98.7 1.2E-08 4.2E-13 64.9 3.0 45 119-163 4-51 (83)
143 2l9r_A Homeobox protein NKX-3. 98.6 1.9E-08 6.5E-13 61.7 3.1 42 122-163 9-50 (69)
144 1e3o_C Octamer-binding transcr 98.6 1.6E-08 5.5E-13 72.1 3.0 49 115-163 99-147 (160)
145 2d5v_A Hepatocyte nuclear fact 98.6 1.8E-08 6.3E-13 72.0 3.0 50 114-163 94-143 (164)
146 2xsd_C POU domain, class 3, tr 98.6 1.7E-08 5.7E-13 72.3 2.7 50 114-163 96-145 (164)
147 1x2m_A LAG1 longevity assuranc 98.6 3.7E-08 1.3E-12 59.4 3.4 39 125-163 8-47 (64)
148 3l1p_A POU domain, class 5, tr 98.6 5.2E-08 1.8E-12 69.0 4.2 49 115-163 94-142 (155)
149 3k2a_A Homeobox protein MEIS2; 98.4 1.1E-07 3.8E-12 57.9 2.8 42 122-163 3-47 (67)
150 1ic8_A Hepatocyte nuclear fact 98.4 5.8E-08 2E-12 71.1 1.7 49 115-163 113-182 (194)
151 2nzz_A Penetratin conjugated G 98.3 3.9E-08 1.3E-12 52.5 -1.1 18 87-104 1-18 (37)
152 2h8r_A Hepatocyte nuclear fact 98.3 2.5E-07 8.5E-12 68.6 2.6 42 114-155 139-180 (221)
153 2da7_A Zinc finger homeobox pr 98.1 1.6E-06 5.4E-11 52.7 2.8 37 126-162 14-50 (71)
154 2lk2_A Homeobox protein TGIF1; 97.8 9E-06 3.1E-10 51.9 2.8 41 123-163 11-54 (89)
155 1mh3_A Maltose binding-A1 home 97.8 5.3E-06 1.8E-10 66.6 1.8 45 119-163 367-411 (421)
156 2ys9_A Homeobox and leucine zi 96.9 0.00089 3E-08 40.4 3.5 40 57-96 18-57 (70)
157 1u78_A TC3 transposase, transp 88.0 2.1 7.1E-05 28.2 6.8 91 50-162 5-97 (141)
158 2glo_A Brinker CG9653-PA; prot 85.8 1.1 3.8E-05 25.3 3.8 46 49-95 3-48 (59)
159 2elh_A CG11849-PA, LD40883P; s 85.7 2.5 8.5E-05 25.9 5.7 45 46-95 17-61 (87)
160 1pdn_C Protein (PRD paired); p 85.5 5.2 0.00018 25.5 8.2 92 51-156 17-108 (128)
161 1hlv_A CENP-B, major centromer 82.3 2 6.9E-05 28.1 4.5 48 48-98 4-51 (131)
162 2k27_A Paired box protein PAX- 81.0 10 0.00036 25.5 9.3 85 50-148 24-108 (159)
163 2rgt_A Fusion of LIM/homeobox 77.8 0.48 1.6E-05 33.1 0.1 30 115-144 134-163 (169)
164 2jn6_A Protein CGL2762, transp 73.7 6.2 0.00021 24.4 4.7 43 49-95 3-46 (97)
165 1k78_A Paired box protein PAX5 70.8 17 0.00057 24.1 6.7 84 50-147 31-114 (149)
166 1jko_C HIN recombinase, DNA-in 70.4 3.2 0.00011 21.9 2.4 41 51-96 5-45 (52)
167 2ys9_A Homeobox and leucine zi 69.3 2.9 9.9E-05 25.0 2.1 39 125-163 14-52 (70)
168 1tc3_C Protein (TC3 transposas 64.3 13 0.00043 19.0 4.9 41 51-96 5-45 (51)
169 2rn7_A IS629 ORFA; helix, all 59.2 20 0.00069 22.3 5.0 47 49-95 4-53 (108)
170 2pmy_A RAS and EF-hand domain- 53.5 4.7 0.00016 24.4 1.1 45 120-164 17-66 (91)
171 1p4w_A RCSB; solution structur 53.1 15 0.00051 23.1 3.5 42 49-96 32-73 (99)
172 1iuf_A Centromere ABP1 protein 51.9 9.8 0.00033 25.6 2.6 51 46-96 6-60 (144)
173 2qko_A Possible transcriptiona 51.5 12 0.0004 26.0 3.1 39 57-96 34-72 (215)
174 1fi6_A EH domain protein REPS1 50.7 20 0.00068 21.6 3.8 44 51-94 2-50 (92)
175 2jml_A DNA binding domain/tran 50.7 18 0.00061 21.6 3.4 20 75-94 8-27 (81)
176 1c07_A Protein (epidermal grow 50.2 7.8 0.00027 23.8 1.8 41 124-164 4-49 (95)
177 3hot_A Transposable element ma 48.5 84 0.0029 23.6 8.0 83 67-164 21-106 (345)
178 3aqt_A Bacterial regulatory pr 47.9 5.3 0.00018 28.7 0.8 39 57-96 52-90 (245)
179 3q0w_A HTH-type transcriptiona 46.2 12 0.0004 26.6 2.4 39 57-96 50-88 (236)
180 2xi8_A Putative transcription 46.0 14 0.00048 20.3 2.3 22 75-96 17-38 (66)
181 2r1j_L Repressor protein C2; p 44.2 16 0.00053 20.2 2.4 22 75-96 21-42 (68)
182 3dcf_A Transcriptional regulat 43.5 21 0.00071 24.4 3.4 38 58-96 38-75 (218)
183 1zug_A Phage 434 CRO protein; 43.2 16 0.00055 20.4 2.3 23 75-97 19-41 (71)
184 3g7r_A Putative transcriptiona 42.8 26 0.00088 24.4 3.8 38 58-96 42-79 (221)
185 2ovk_B RLC, myosin regulatory 41.9 66 0.0023 20.5 7.2 106 48-164 6-126 (153)
186 3i5g_B Myosin regulatory light 41.0 60 0.0021 21.4 5.3 106 48-164 6-126 (153)
187 2cqq_A RSGI RUH-037, DNAJ homo 41.0 54 0.0019 19.3 4.8 47 49-95 8-54 (72)
188 3c57_A Two component transcrip 40.5 17 0.0006 22.3 2.3 45 50-100 26-70 (95)
189 3ulq_B Transcriptional regulat 40.4 41 0.0014 20.5 4.0 44 47-96 25-68 (90)
190 2x48_A CAG38821; archeal virus 40.4 16 0.00056 19.6 1.9 39 51-94 13-53 (55)
191 3bs3_A Putative DNA-binding pr 40.4 19 0.00065 20.4 2.3 22 75-96 26-47 (76)
192 3gp4_A Transcriptional regulat 40.0 48 0.0016 22.1 4.6 21 75-95 5-25 (142)
193 2lz1_A Nuclear factor erythroi 39.9 23 0.00077 22.1 2.6 34 121-164 32-65 (90)
194 1ku3_A Sigma factor SIGA; heli 39.9 36 0.0012 19.4 3.6 45 51-96 10-54 (73)
195 1r8d_A Transcription activator 39.8 48 0.0017 20.8 4.4 20 75-94 5-24 (109)
196 2o8x_A Probable RNA polymerase 39.7 36 0.0012 18.9 3.5 42 51-97 15-56 (70)
197 3fiw_A Putative TETR-family tr 39.6 13 0.00045 26.2 1.8 49 47-96 20-69 (211)
198 1adr_A P22 C2 repressor; trans 39.2 20 0.0007 20.3 2.4 22 75-96 21-42 (76)
199 3bd1_A CRO protein; transcript 39.1 15 0.00052 21.4 1.8 23 75-97 14-36 (79)
200 3omt_A Uncharacterized protein 38.9 22 0.00075 20.2 2.5 22 75-96 24-45 (73)
201 1q06_A Transcriptional regulat 38.8 46 0.0016 21.9 4.4 21 75-95 3-23 (135)
202 2lv7_A Calcium-binding protein 38.8 67 0.0023 19.7 6.7 47 48-94 26-79 (100)
203 1r69_A Repressor protein CI; g 38.8 23 0.00077 19.6 2.5 22 75-96 17-38 (69)
204 2q24_A Putative TETR family tr 38.6 18 0.0006 24.5 2.3 39 56-96 20-58 (194)
205 2iai_A Putative transcriptiona 38.4 26 0.00087 24.6 3.2 40 56-96 35-74 (230)
206 3kz3_A Repressor protein CI; f 37.9 22 0.00074 20.7 2.3 22 75-96 28-49 (80)
207 2b5a_A C.BCLI; helix-turn-heli 37.4 22 0.00076 20.2 2.3 22 75-96 26-47 (77)
208 2vz4_A Tipal, HTH-type transcr 37.4 49 0.0017 20.8 4.1 20 75-94 4-23 (108)
209 1fse_A GERE; helix-turn-helix 36.9 33 0.0011 19.3 3.0 42 49-96 9-50 (74)
210 2kz5_A Transcription factor NF 36.9 27 0.00092 21.7 2.6 33 122-164 33-65 (91)
211 2zhg_A Redox-sensitive transcr 36.5 56 0.0019 22.1 4.5 22 74-95 13-34 (154)
212 2qwt_A Transcriptional regulat 35.4 25 0.00084 24.0 2.6 37 58-96 20-56 (196)
213 3g5g_A Regulatory protein; tra 35.4 77 0.0026 19.4 5.0 21 75-95 44-64 (99)
214 1y7y_A C.AHDI; helix-turn-heli 34.9 26 0.00089 19.6 2.3 22 75-96 29-50 (74)
215 1je8_A Nitrate/nitrite respons 34.8 28 0.00095 20.7 2.5 44 50-99 20-63 (82)
216 3b7h_A Prophage LP1 protein 11 34.2 27 0.00091 19.9 2.3 22 75-96 23-44 (78)
217 2kpj_A SOS-response transcript 34.1 26 0.00089 21.1 2.3 23 75-97 25-47 (94)
218 2hin_A GP39, repressor protein 33.8 20 0.00069 21.1 1.7 21 75-95 13-33 (71)
219 3gpv_A Transcriptional regulat 33.7 53 0.0018 22.0 4.1 21 75-95 19-39 (148)
220 2p7v_B Sigma-70, RNA polymeras 33.6 43 0.0015 18.8 3.1 49 51-100 5-53 (68)
221 3hug_A RNA polymerase sigma fa 32.9 52 0.0018 19.7 3.6 42 51-97 37-78 (92)
222 1j7q_A CAVP, calcium vector pr 32.4 41 0.0014 19.4 3.0 39 122-160 6-51 (86)
223 2k9q_A Uncharacterized protein 32.3 30 0.001 19.8 2.3 22 75-96 18-39 (77)
224 3fia_A Intersectin-1; EH 1 dom 31.9 84 0.0029 20.5 4.6 46 48-93 23-73 (121)
225 2a6c_A Helix-turn-helix motif; 31.5 29 0.001 20.4 2.2 22 75-96 34-55 (83)
226 1rzs_A Antirepressor, regulato 31.3 25 0.00087 19.6 1.8 19 75-93 13-31 (61)
227 3u0k_A Rcamp; fluorescent prot 30.9 24 0.00083 28.6 2.1 46 119-164 291-343 (440)
228 3f6w_A XRE-family like protein 30.6 33 0.0011 19.8 2.4 22 75-96 30-51 (83)
229 3ccy_A Putative TETR-family tr 30.6 39 0.0013 22.9 3.0 39 57-96 20-58 (203)
230 1j9i_A GPNU1 DBD;, terminase s 30.5 31 0.0011 19.6 2.1 21 75-95 5-25 (68)
231 2ef8_A C.ECOT38IS, putative tr 30.4 34 0.0012 19.7 2.3 22 75-96 26-47 (84)
232 3fmy_A HTH-type transcriptiona 30.3 35 0.0012 19.5 2.4 41 50-97 9-49 (73)
233 3hh0_A Transcriptional regulat 30.2 78 0.0027 21.1 4.4 21 75-95 7-27 (146)
234 2lhi_A Calmodulin, serine/thre 30.1 41 0.0014 22.8 3.0 110 49-164 2-125 (176)
235 2kvr_A Ubiquitin carboxyl-term 29.4 27 0.00092 23.2 1.9 24 75-98 72-95 (130)
236 2hxi_A Putative transcriptiona 29.2 38 0.0013 24.4 2.9 47 49-96 26-73 (241)
237 1rr7_A Middle operon regulator 28.7 18 0.00062 24.0 0.9 20 146-165 94-113 (129)
238 2fq4_A Transcriptional regulat 28.4 35 0.0012 23.0 2.4 38 58-96 19-56 (192)
239 1tty_A Sigma-A, RNA polymerase 28.3 69 0.0024 19.0 3.6 47 51-98 18-64 (87)
240 1iq3_A Ralbp1-interacting prot 28.3 15 0.0005 23.4 0.4 43 122-164 14-61 (110)
241 1skn_P DNA-binding domain of S 27.9 47 0.0016 20.7 2.6 34 121-164 28-61 (92)
242 2iu5_A DHAS, YCEG, HTH-type dh 27.6 33 0.0011 23.1 2.2 40 56-96 18-57 (195)
243 1x3u_A Transcriptional regulat 27.4 31 0.0011 19.8 1.8 41 52-98 17-57 (79)
244 1lmb_3 Protein (lambda repress 27.4 40 0.0014 19.9 2.4 22 75-96 33-54 (92)
245 3g1o_A Transcriptional regulat 27.3 33 0.0011 24.4 2.3 39 57-96 49-87 (255)
246 3ppb_A Putative TETR family tr 27.2 43 0.0015 22.2 2.7 40 56-96 14-53 (195)
247 2ict_A Antitoxin HIGA; helix-t 27.0 37 0.0013 20.3 2.2 22 75-96 24-45 (94)
248 2rek_A Putative TETR-family tr 26.8 24 0.00082 23.9 1.3 38 57-96 22-59 (199)
249 3s8q_A R-M controller protein; 26.8 44 0.0015 19.2 2.4 22 75-96 27-48 (82)
250 3qq6_A HTH-type transcriptiona 26.4 46 0.0016 19.3 2.4 21 75-95 26-46 (78)
251 3t76_A VANU, transcriptional r 26.4 42 0.0014 20.3 2.3 22 75-96 40-61 (88)
252 3vpr_A Transcriptional regulat 26.4 40 0.0014 22.6 2.4 40 57-97 9-48 (190)
253 3qbm_A TETR transcriptional re 26.4 39 0.0013 22.5 2.4 39 57-96 13-51 (199)
254 2wiu_B HTH-type transcriptiona 26.1 35 0.0012 19.9 1.9 22 75-96 28-49 (88)
255 3i9v_2 NADH-quinone oxidoreduc 25.9 33 0.0011 24.2 1.9 27 138-164 37-63 (181)
256 1qgp_A Protein (double strande 25.8 23 0.00078 21.1 0.9 19 146-164 33-51 (77)
257 2xdn_A HTH-type transcriptiona 25.7 40 0.0014 23.0 2.4 39 57-96 17-55 (210)
258 3kkc_A TETR family transcripti 25.6 43 0.0015 22.0 2.5 39 57-96 18-56 (177)
259 1eh2_A EPS15; calcium binding, 25.4 1.2E+02 0.0043 18.8 4.5 45 50-94 7-55 (106)
260 2l49_A C protein; P2 bacteriop 25.1 47 0.0016 19.9 2.4 24 75-98 20-43 (99)
261 3bqz_B HTH-type transcriptiona 25.0 45 0.0015 22.1 2.5 39 57-96 8-46 (194)
262 1ngr_A P75 low affinity neurot 25.0 47 0.0016 20.2 2.3 33 126-164 9-41 (85)
263 2yve_A Transcriptional regulat 25.0 49 0.0017 22.2 2.7 39 57-96 10-48 (185)
264 2zcm_A Biofilm operon icaabcd 25.0 45 0.0015 22.3 2.5 41 55-96 11-51 (192)
265 3anp_C Transcriptional repress 25.0 53 0.0018 22.2 2.9 39 57-96 15-53 (204)
266 3rd3_A Probable transcriptiona 24.7 43 0.0015 22.3 2.3 39 57-96 16-54 (197)
267 2pz9_A Putative regulatory pro 24.7 14 0.00048 25.9 -0.2 39 57-96 36-74 (226)
268 1x57_A Endothelial differentia 24.6 44 0.0015 19.8 2.1 23 75-97 29-51 (91)
269 1r8e_A Multidrug-efflux transp 24.6 1.7E+02 0.0057 21.2 5.8 21 75-95 8-28 (278)
270 3jsj_A Putative TETR-family tr 24.3 43 0.0015 22.3 2.3 39 56-96 14-52 (190)
271 3kz9_A SMCR; transcriptional r 24.1 51 0.0018 22.0 2.7 38 58-96 24-61 (206)
272 1s7o_A Hypothetical UPF0122 pr 24.0 91 0.0031 19.8 3.7 44 51-99 22-65 (113)
273 3qkx_A Uncharacterized HTH-typ 24.0 53 0.0018 21.6 2.7 39 57-96 14-52 (188)
274 3bni_A Putative TETR-family tr 23.9 46 0.0016 23.2 2.4 38 58-96 50-87 (229)
275 1fad_A Protein (FADD protein); 23.9 39 0.0013 20.9 1.8 20 145-164 26-45 (99)
276 3bru_A Regulatory protein, TET 23.8 52 0.0018 22.4 2.7 39 57-96 36-74 (222)
277 2k27_A Paired box protein PAX- 23.6 1.6E+02 0.0055 19.3 6.8 51 49-99 81-138 (159)
278 1qbj_A Protein (double-strande 23.6 26 0.0009 21.1 0.9 19 146-164 29-47 (81)
279 2rae_A Transcriptional regulat 23.6 60 0.002 21.9 2.9 40 57-97 23-62 (207)
280 3gzi_A Transcriptional regulat 23.5 53 0.0018 22.3 2.7 37 59-96 25-61 (218)
281 2ppx_A AGR_C_3184P, uncharacte 23.4 52 0.0018 20.0 2.3 22 75-96 46-67 (99)
282 3lwj_A Putative TETR-family tr 23.4 49 0.0017 22.2 2.4 38 58-96 19-56 (202)
283 1dtl_A Cardiac troponin C; hel 23.3 1.3E+02 0.0046 19.0 4.6 46 49-94 9-62 (161)
284 3vib_A MTRR; helix-turn-helix 22.9 50 0.0017 22.5 2.4 38 58-96 17-54 (210)
285 3mzy_A RNA polymerase sigma-H 22.9 76 0.0026 20.5 3.3 39 51-95 109-147 (164)
286 2ktg_A Calmodulin, putative; e 22.8 1.1E+02 0.0036 17.3 3.6 45 50-94 6-57 (85)
287 3b81_A Transcriptional regulat 22.8 49 0.0017 22.1 2.4 39 57-96 17-55 (203)
288 3him_A Probable transcriptiona 22.7 43 0.0015 22.5 2.1 39 57-96 22-60 (211)
289 2f07_A YVDT; helix-turn-helix, 22.7 63 0.0022 21.8 2.9 41 56-97 15-55 (197)
290 2rnj_A Response regulator prot 22.6 33 0.0011 20.7 1.2 45 50-100 28-72 (91)
291 2jpc_A SSRB; DNA binding prote 22.5 38 0.0013 18.3 1.4 24 75-98 16-39 (61)
292 2ras_A Transcriptional regulat 22.4 49 0.0017 22.5 2.3 38 58-96 18-55 (212)
293 3knw_A Putative transcriptiona 22.3 52 0.0018 22.2 2.4 39 57-96 20-58 (212)
294 2ofy_A Putative XRE-family tra 22.2 57 0.0019 18.9 2.3 22 75-96 30-51 (86)
295 2d6y_A Putative TETR family re 22.1 53 0.0018 22.4 2.4 39 57-96 14-52 (202)
296 2opo_A Polcalcin CHE A 3; calc 22.0 96 0.0033 17.6 3.3 44 51-94 4-53 (86)
297 2ewt_A BLDD, putative DNA-bind 22.0 55 0.0019 18.0 2.1 22 75-96 24-47 (71)
298 2fd5_A Transcriptional regulat 21.9 65 0.0022 21.1 2.8 39 57-96 13-51 (180)
299 2dg7_A Putative transcriptiona 21.7 50 0.0017 22.1 2.2 41 57-98 13-53 (195)
300 3crj_A Transcription regulator 21.7 54 0.0018 22.3 2.4 39 57-96 20-58 (199)
301 3eus_A DNA-binding protein; st 21.7 61 0.0021 19.1 2.3 22 75-96 30-51 (86)
302 1pb6_A Hypothetical transcript 21.7 55 0.0019 22.0 2.4 38 58-96 25-62 (212)
303 1t33_A Putative transcriptiona 21.5 36 0.0012 23.3 1.5 38 57-96 18-55 (224)
304 3f1b_A TETR-like transcription 21.4 56 0.0019 21.8 2.4 38 58-96 21-58 (203)
305 3vp5_A Transcriptional regulat 21.4 64 0.0022 21.7 2.7 39 57-96 18-56 (189)
306 2jrt_A Uncharacterized protein 21.4 1.5E+02 0.0053 18.2 5.5 43 49-95 30-72 (95)
307 3he0_A Transcriptional regulat 21.4 56 0.0019 21.7 2.4 41 55-96 15-55 (196)
308 2hxo_A Putative TETR-family tr 21.3 1E+02 0.0035 21.8 4.0 49 47-96 11-60 (237)
309 2hyt_A TETR-family transcripti 21.3 57 0.002 22.0 2.5 39 57-96 18-56 (197)
310 1avs_A Troponin C; muscle cont 21.2 1.1E+02 0.0039 17.5 3.6 44 51-94 13-63 (90)
311 3lhq_A Acrab operon repressor 21.2 56 0.0019 22.0 2.4 39 57-96 20-58 (220)
312 2eh3_A Transcriptional regulat 21.0 58 0.002 21.5 2.4 39 57-96 8-46 (179)
313 2wui_A MEXZ, transcriptional r 20.9 65 0.0022 21.9 2.7 37 59-96 19-55 (210)
314 3i9v_2 NADH-quinone oxidoreduc 20.8 1.3E+02 0.0043 21.0 4.2 36 55-90 26-61 (181)
315 1vi0_A Transcriptional regulat 20.7 39 0.0013 23.1 1.5 39 57-96 14-52 (206)
316 3op9_A PLI0006 protein; struct 20.7 60 0.0021 20.1 2.3 24 75-98 25-48 (114)
317 3cdl_A Transcriptional regulat 20.6 59 0.002 22.0 2.4 38 58-96 16-53 (203)
318 2zcx_A SCO7815, TETR-family tr 20.5 58 0.002 22.9 2.4 39 57-96 29-67 (231)
319 3lsg_A Two-component response 20.5 69 0.0024 19.4 2.5 22 74-95 21-42 (103)
320 3dpj_A Transcription regulator 20.5 60 0.0021 21.5 2.4 39 57-96 14-52 (194)
321 2v57_A TETR family transcripti 20.4 43 0.0015 22.2 1.6 35 59-96 22-56 (190)
322 2qtq_A Transcriptional regulat 20.4 60 0.0021 21.8 2.4 39 57-96 22-60 (213)
323 2joj_A Centrin protein; N-term 20.4 87 0.003 17.2 2.8 43 52-94 1-50 (77)
324 3nxc_A HTH-type protein SLMA; 20.3 37 0.0013 23.0 1.3 33 63-96 37-69 (212)
325 1sgm_A Putative HTH-type trans 20.3 56 0.0019 21.5 2.2 40 56-96 11-51 (191)
326 2yqf_A Ankyrin-1; death domain 20.3 50 0.0017 21.0 1.8 19 146-164 31-49 (111)
327 2kn2_A Calmodulin; S MAPK phos 20.3 61 0.0021 18.8 2.1 37 126-162 5-48 (92)
328 2pij_A Prophage PFL 6 CRO; tra 20.2 63 0.0022 17.7 2.1 22 75-96 16-37 (67)
329 1zk8_A Transcriptional regulat 20.1 41 0.0014 22.2 1.4 40 56-96 13-52 (183)
330 1b0n_B Protein (SINI protein); 20.0 32 0.0011 19.5 0.7 16 149-164 20-35 (57)
331 1rkt_A Protein YFIR; transcrip 20.0 61 0.0021 22.0 2.4 37 59-96 20-56 (205)
332 1qjt_A EH1, epidermal growth f 20.0 49 0.0017 20.3 1.7 37 128-164 9-50 (99)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.6e-21 Score=122.89 Aligned_cols=68 Identities=54% Similarity=0.805 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCC
Q psy17007 39 GSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTS 106 (165)
Q Consensus 39 ~~~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~ 106 (165)
+...++.++.|+.|+.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.++...+
T Consensus 11 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~s 78 (80)
T 2dmt_A 11 GTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPS 78 (80)
T ss_dssp CCCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCC
Confidence 34566788999999999999999999999999999999999999999999999999999999876543
No 2
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=3.9e-21 Score=119.75 Aligned_cols=66 Identities=32% Similarity=0.495 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTS 106 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~ 106 (165)
..++.++.|+.|+.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||+++++...+
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPS 68 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCC
Confidence 445678899999999999999999999999999999999999999999999999999999876543
No 3
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.3e-21 Score=118.50 Aligned_cols=66 Identities=44% Similarity=0.676 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTS 106 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~ 106 (165)
..++.++.|+.|+.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.++...+
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~s 68 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPS 68 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCC
Confidence 445678899999999999999999999999999999999999999999999999999999876543
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=120.47 Aligned_cols=67 Identities=42% Similarity=0.586 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCC
Q psy17007 39 GSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFST 105 (165)
Q Consensus 39 ~~~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~ 105 (165)
....++.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||||||++.++...
T Consensus 16 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 16 DKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3445678899999999999999999999999999999999999999999999999999999987543
No 5
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.7e-21 Score=118.67 Aligned_cols=66 Identities=33% Similarity=0.522 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTS 106 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~ 106 (165)
..++.++.|+.|+.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.++...+
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPS 68 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCC
Confidence 345678899999999999999999999999999999999999999999999999999999875543
No 6
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=9.3e-21 Score=118.02 Aligned_cols=67 Identities=31% Similarity=0.389 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCC
Q psy17007 40 SKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTS 106 (165)
Q Consensus 40 ~~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~ 106 (165)
+..++.++.|+.|+.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.++...+
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 3456778899999999999999999999999999999999999999999999999999999875543
No 7
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=9.1e-21 Score=121.03 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCC
Q psy17007 39 GSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTS 106 (165)
Q Consensus 39 ~~~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~ 106 (165)
.....+.++.|+.|+.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.++...+
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 78 (80)
T 2da3_A 11 GEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78 (80)
T ss_dssp CCCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccC
Confidence 33456778899999999999999999999999999999999999999999999999999999875543
No 8
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.82 E-value=4.2e-20 Score=117.77 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccc
Q psy17007 42 HCRRRKARTVFSDHQLTGLEKRFEA----QRYLSTPERVELATALQLSETQVKTWFQNRLPFGSL 102 (165)
Q Consensus 42 ~~~~rr~R~~~s~~q~~~Le~~f~~----~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~ 102 (165)
.++.+|.|+.||.+|+..||..|+. ++||+..++++||..+||++.+|++||||||+|.+.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4567889999999999999999999 999999999999999999999999999999999864
No 9
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.9e-20 Score=119.59 Aligned_cols=68 Identities=31% Similarity=0.433 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCCCC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTSPH 108 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~~~ 108 (165)
..++.++.|+.|+.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.++......
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 44677899999999999999999999999999999999999999999999999999999987654443
No 10
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=9.7e-21 Score=117.93 Aligned_cols=65 Identities=25% Similarity=0.322 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFST 105 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~ 105 (165)
..++.++.|+.|+.+|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 44567899999999999999999999999999999999999999999999999999999987554
No 11
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=6.3e-20 Score=116.82 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccc
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEA-----QRYLSTPERVELATALQLSETQVKTWFQNRLPFGSL 102 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~-----~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~ 102 (165)
...+.+|.||.||.+|+..|| .|.. ++||+..++++||..+||++.+|+|||||||++.+.
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 445678899999999999999 7999 999999999999999999999999999999999864
No 12
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=2.1e-20 Score=116.41 Aligned_cols=64 Identities=48% Similarity=0.636 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCC
Q psy17007 42 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFST 105 (165)
Q Consensus 42 ~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~ 105 (165)
..+.++.|++|+.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||+++++...
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 3456788999999999999999999999999999999999999999999999999999976544
No 13
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.81 E-value=1.9e-20 Score=113.90 Aligned_cols=60 Identities=47% Similarity=0.659 Sum_probs=52.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 44 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 44 ~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
+.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467889999999999999999999999999999999999999999999999999999764
No 14
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.80 E-value=3.9e-20 Score=117.26 Aligned_cols=64 Identities=44% Similarity=0.633 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 40 SKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 40 ~~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
+..++.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++.
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 3456678889999999999999999999999999999999999999999999999999998754
No 15
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.79 E-value=6e-20 Score=113.03 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccC
Q psy17007 44 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 44 ~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~ 104 (165)
+.++.|+.||.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.++..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 3578899999999999999999999999999999999999999999999999999987643
No 16
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.79 E-value=1e-19 Score=114.11 Aligned_cols=63 Identities=29% Similarity=0.493 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCC
Q psy17007 43 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFST 105 (165)
Q Consensus 43 ~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~ 105 (165)
.+.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 456889999999999999999999999999999999999999999999999999999987543
No 17
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.79 E-value=7.1e-20 Score=116.04 Aligned_cols=63 Identities=40% Similarity=0.512 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
..++.++.|+.|+..|+.+||..|..++||+..+++.||..+||++.+|++||||||++.++.
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999999999999999999999998653
No 18
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.9e-20 Score=117.62 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccC
Q psy17007 42 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 42 ~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~ 104 (165)
.++.++.|+.|+.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.++..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999997643
No 19
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=4.5e-20 Score=117.81 Aligned_cols=62 Identities=31% Similarity=0.484 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 42 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 42 ~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
.++.++.|+.|+.+|+.+||..|..++||+..++..||..+||++.+|++||+|||+++++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999998753
No 20
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.79 E-value=3.9e-20 Score=112.17 Aligned_cols=60 Identities=23% Similarity=0.349 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcc
Q psy17007 42 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGS 101 (165)
Q Consensus 42 ~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~ 101 (165)
.++.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||+|||++.+
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 456788999999999999999999999999999999999999999999999999998763
No 21
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.79 E-value=3.5e-20 Score=113.07 Aligned_cols=60 Identities=42% Similarity=0.629 Sum_probs=54.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 44 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 44 ~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
+.++.|+.||..|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 357889999999999999999999999999999999999999999999999999998653
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=4.8e-20 Score=110.63 Aligned_cols=57 Identities=49% Similarity=0.771 Sum_probs=54.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccc
Q psy17007 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSL 102 (165)
Q Consensus 46 rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~ 102 (165)
++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 577899999999999999999999999999999999999999999999999998764
No 23
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.79 E-value=4.3e-20 Score=111.99 Aligned_cols=58 Identities=36% Similarity=0.653 Sum_probs=52.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccc
Q psy17007 45 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSL 102 (165)
Q Consensus 45 ~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~ 102 (165)
.++.|+.||.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4788999999999999999999999999999999999999999999999999998764
No 24
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.79 E-value=4.4e-20 Score=114.28 Aligned_cols=63 Identities=38% Similarity=0.581 Sum_probs=58.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCCC
Q psy17007 45 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTSP 107 (165)
Q Consensus 45 ~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~~ 107 (165)
.++.|+.||..|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 478899999999999999999999999999999999999999999999999999998755443
No 25
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.78 E-value=8.6e-20 Score=116.72 Aligned_cols=62 Identities=39% Similarity=0.566 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 42 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 42 ~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
.++.++.|+.|+.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.++.
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 34568899999999999999999999999999999999999999999999999999998764
No 26
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4.4e-20 Score=117.85 Aligned_cols=64 Identities=27% Similarity=0.330 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQ----RYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~----~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~ 104 (165)
..++.++.|+.|+.+|+.+||.+|..+ +||+..+++.||..+||++.+|++||||||++.++..
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 345678899999999999999999999 9999999999999999999999999999999997643
No 27
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.78 E-value=1.7e-19 Score=118.16 Aligned_cols=64 Identities=44% Similarity=0.667 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~ 104 (165)
.+.+.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||++.++..
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhh
Confidence 3456788999999999999999999999999999999999999999999999999999997644
No 28
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.78 E-value=2.9e-19 Score=112.61 Aligned_cols=65 Identities=34% Similarity=0.490 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFST 105 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~ 105 (165)
..++.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++...
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 34567888999999999999999999999999999999999999999999999999999876543
No 29
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4.4e-19 Score=111.78 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=55.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCC
Q psy17007 47 KARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTS 106 (165)
Q Consensus 47 r~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~ 106 (165)
+.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++....
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 456789999999999999999999999999999999999999999999999999875543
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.77 E-value=2e-19 Score=111.34 Aligned_cols=61 Identities=48% Similarity=0.695 Sum_probs=57.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCC
Q psy17007 45 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFST 105 (165)
Q Consensus 45 ~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~ 105 (165)
.++.|+.||..|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4788999999999999999999999999999999999999999999999999999976543
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.77 E-value=1.6e-19 Score=108.26 Aligned_cols=57 Identities=56% Similarity=0.847 Sum_probs=53.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcc
Q psy17007 45 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGS 101 (165)
Q Consensus 45 ~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~ 101 (165)
.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||+|||++.+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999998763
No 32
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.77 E-value=1.7e-19 Score=117.14 Aligned_cols=62 Identities=39% Similarity=0.556 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 42 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 42 ~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
+++.++.|+.|+..|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.++.
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 45678899999999999999999999999999999999999999999999999999998764
No 33
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.77 E-value=1.4e-19 Score=109.39 Aligned_cols=57 Identities=46% Similarity=0.705 Sum_probs=54.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccc
Q psy17007 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSL 102 (165)
Q Consensus 46 rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~ 102 (165)
++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 578999999999999999999999999999999999999999999999999998864
No 34
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.77 E-value=2e-19 Score=111.00 Aligned_cols=61 Identities=30% Similarity=0.409 Sum_probs=57.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCC
Q psy17007 45 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFST 105 (165)
Q Consensus 45 ~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~ 105 (165)
+++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++...
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 3688999999999999999999999999999999999999999999999999999976543
No 35
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.77 E-value=5.9e-20 Score=113.72 Aligned_cols=61 Identities=34% Similarity=0.532 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccC
Q psy17007 44 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 44 ~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~ 104 (165)
+.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 4688899999999999999999999999999999999999999999999999999987644
No 36
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.77 E-value=1.4e-19 Score=112.06 Aligned_cols=60 Identities=38% Similarity=0.650 Sum_probs=56.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccC
Q psy17007 45 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 45 ~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~ 104 (165)
.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 478899999999999999999999999999999999999999999999999999987643
No 37
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=4.7e-19 Score=107.15 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcc
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEA-QRYLSTPERVELATALQLSETQVKTWFQNRLPFGS 101 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~-~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~ 101 (165)
..++.+|.||.|+.+|+..|+..|+. +.||+.+.++.||..+||++++|++||||+|..-+
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 34567899999999999999999999 99999999999999999999999999999987654
No 38
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.2e-19 Score=111.42 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=56.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCC
Q psy17007 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTS 106 (165)
Q Consensus 46 rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~ 106 (165)
...|++||.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.++....
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 4458999999999999999999999999999999999999999999999999999875543
No 39
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.76 E-value=2.1e-19 Score=114.94 Aligned_cols=62 Identities=37% Similarity=0.550 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccc
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSL 102 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~ 102 (165)
..++.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk 75 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 75 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhh
Confidence 35677889999999999999999999999999999999999999999999999999999865
No 40
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=3.1e-19 Score=111.65 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCCC
Q psy17007 46 RKARTVFSDHQLTGLEKRFEA-QRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTSP 107 (165)
Q Consensus 46 rr~R~~~s~~q~~~Le~~f~~-~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~~ 107 (165)
.+.|+.|+.+|+.+||..|.. ++||+..++..||..+||++.+|++||+|||++.++.....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCC
Confidence 567899999999999999996 99999999999999999999999999999999998755433
No 41
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.76 E-value=3.5e-19 Score=117.40 Aligned_cols=63 Identities=19% Similarity=0.137 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
.....++.|+.|+.+|+.+||..|..++||+..+++.||..+||++.+|++||||||++.++.
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 345567889999999999999999999999999999999999999999999999999998764
No 42
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=8.3e-19 Score=109.98 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
..++.++.|+.|+..|+.+|+.+|.. ++||+..+++.||..+||++.+|++||+|+|++.+..
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 34567888999999999999999987 9999999999999999999999999999999998654
No 43
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=5.2e-19 Score=110.93 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCCC
Q psy17007 46 RKARTVFSDHQLTGLEKRFEA-QRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTSP 107 (165)
Q Consensus 46 rr~R~~~s~~q~~~Le~~f~~-~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~~ 107 (165)
++.|+.|+.+|+.+||..|.. ++||+..++..||..+||++.+|++||+|||++.++.....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCC
Confidence 567899999999999999995 99999999999999999999999999999999998755433
No 44
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=109.56 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCC
Q psy17007 45 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTS 106 (165)
Q Consensus 45 ~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~ 106 (165)
.++.|+.|+.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.++....
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 46789999999999999999999999999999999999999999999999999999875543
No 45
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=9.4e-19 Score=107.00 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=55.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccc
Q psy17007 44 RRRKARTVFSDHQLTGLEKRF---EAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSL 102 (165)
Q Consensus 44 ~~rr~R~~~s~~q~~~Le~~f---~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~ 102 (165)
.+++.|+.|+.+|+.+|+.+| ..++||+..+++.||..+||++.+|++||+|+|++.++
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999 89999999999999999999999999999999999864
No 46
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.75 E-value=4e-19 Score=107.30 Aligned_cols=56 Identities=34% Similarity=0.495 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 48 ARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 48 ~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 47899999999999999999999999999999999999999999999999998764
No 47
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=4.5e-19 Score=111.07 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=53.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccC
Q psy17007 47 KARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 47 r~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~ 104 (165)
..|..||.+|+.+|+..|..++||+..+++.||..+||++.+|++||+|+|++.+...
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 3456799999999999999999999999999999999999999999999999987644
No 48
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=5.6e-19 Score=116.23 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc---------------cchhhhhhhhccCCCCccccCC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQ---------------LSETQVKTWFQNRLPFGSLFST 105 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~---------------l~~~~V~~WF~nrr~~~~~~~~ 105 (165)
..++.++.|+.|+.+|+.+||.+|..++||+..+++.||..+| |++.+|++||+|||+++++...
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999999999999 9999999999999999976543
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.74 E-value=5.2e-19 Score=105.35 Aligned_cols=53 Identities=49% Similarity=0.718 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccc
Q psy17007 50 TVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSL 102 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~ 102 (165)
|.|+.+|+.+||..|..++||+..++..||..+||++.+|++||+|||++.++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 67999999999999999999999999999999999999999999999998865
No 50
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=6.5e-19 Score=116.33 Aligned_cols=62 Identities=47% Similarity=0.609 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccC
Q psy17007 43 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 43 ~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~ 104 (165)
++.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||||||++.++..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 45678899999999999999999999999999999999999999999999999999987643
No 51
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.72 E-value=3.5e-18 Score=112.79 Aligned_cols=64 Identities=25% Similarity=0.316 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------------hc---cchhhhhhhhccCCCC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATA------------------LQ---LSETQVKTWFQNRLPF 99 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~------------------l~---l~~~~V~~WF~nrr~~ 99 (165)
..++.++.|+.|+..|+.+||..|..++||+..++++||.. +| |++.+|++||+|||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 45677899999999999999999999999999999999999 88 9999999999999999
Q ss_pred ccccC
Q psy17007 100 GSLFS 104 (165)
Q Consensus 100 ~~~~~ 104 (165)
.++..
T Consensus 85 ~k~k~ 89 (99)
T 1lfb_A 85 EAFRH 89 (99)
T ss_dssp TSCCC
T ss_pred HHHhc
Confidence 87654
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.72 E-value=3.8e-18 Score=106.95 Aligned_cols=60 Identities=25% Similarity=0.305 Sum_probs=56.2
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCC
Q psy17007 46 RKARTVFSDHQLTGLEKRF---EAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFST 105 (165)
Q Consensus 46 rr~R~~~s~~q~~~Le~~f---~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~ 105 (165)
++.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.+|++||+|+|++.+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 6788999999999999999 89999999999999999999999999999999999976443
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.72 E-value=7.9e-18 Score=108.00 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 42 HCRRRKARTVFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 42 ~~~~rr~R~~~s~~q~~~Le~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
..+.++.|+.|+.+|+.+|+.+|.. ++||+..+++.||..+||+..||++||+|+|++.+..
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 4567788999999999999999988 5999999999999999999999999999999998653
No 54
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.71 E-value=4.3e-18 Score=102.72 Aligned_cols=54 Identities=28% Similarity=0.364 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccc
Q psy17007 49 RTVFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQVKTWFQNRLPFGSL 102 (165)
Q Consensus 49 R~~~s~~q~~~Le~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~ 102 (165)
|++|+.+|+.+|+.+|.. ++||+..+++.||..+||++.+|++||+|||++.++
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 689999999999999999 999999999999999999999999999999998865
No 55
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.5e-18 Score=108.34 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=54.7
Q ss_pred CCCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccC
Q psy17007 45 RRKARTVFSDHQLTGLEKRF-EAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 45 ~rr~R~~~s~~q~~~Le~~f-~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~ 104 (165)
+.+.+.+++.+|+.+||..| ..++||+..+++.||..+||++.+|++||||||++++...
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 34566778899999999999 9999999999999999999999999999999999998654
No 56
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.71 E-value=3.8e-18 Score=122.69 Aligned_cols=66 Identities=30% Similarity=0.336 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTS 106 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~ 106 (165)
..++.+|.|++|+..|+.+||..|..++||+..++..||..+||++.+|++||||||+++++....
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 346778899999999999999999999999999999999999999999999999999999876543
No 57
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.2e-18 Score=111.75 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh---------------------ccchhhhhhhhccCCCC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATAL---------------------QLSETQVKTWFQNRLPF 99 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l---------------------~l~~~~V~~WF~nrr~~ 99 (165)
..++.+|.|+.|+..|+.+||..|..++||+..++++||..+ +|++.+|++||+|||++
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 345678999999999999999999999999999999999999 68999999999999999
Q ss_pred cccc
Q psy17007 100 GSLF 103 (165)
Q Consensus 100 ~~~~ 103 (165)
+++.
T Consensus 82 ~kr~ 85 (102)
T 2da6_A 82 EAFR 85 (102)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8653
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.71 E-value=6e-18 Score=119.53 Aligned_cols=64 Identities=30% Similarity=0.397 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 40 SKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 40 ~~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
+..++.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||||||++.++.
T Consensus 82 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 82 GANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3456678899999999999999999999999999999999999999999999999999998764
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.70 E-value=6.1e-18 Score=109.50 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcc
Q psy17007 43 CRRRKARTVFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQVKTWFQNRLPFGS 101 (165)
Q Consensus 43 ~~~rr~R~~~s~~q~~~Le~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~ 101 (165)
.+.++.|++|+.+|+.+|+.+|.. ++||+..+++.||..+||++.+|++||+|||++.+
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 445667899999999999999999 99999999999999999999999999999998875
No 60
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=101.41 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccC
Q psy17007 50 TVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~ 104 (165)
..++.+|+..||..|..++||+..++..||..+||++.+|++||||||+|.+...
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 4567999999999999999999999999999999999999999999999987643
No 61
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=106.09 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCCC
Q psy17007 51 VFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTSP 107 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~~ 107 (165)
.||.+|+.+||..|..++||+..+++.||..+||++.+|++||+|||++.+......
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 489999999999999999999999999999999999999999999999987655443
No 62
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.70 E-value=6.5e-18 Score=121.10 Aligned_cols=61 Identities=26% Similarity=0.415 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 43 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 43 ~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
.+.+|.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||||||++.++.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678899999999999999999999999999999999999999999999999999998764
No 63
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.70 E-value=1e-17 Score=119.07 Aligned_cols=63 Identities=27% Similarity=0.426 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccc
Q psy17007 40 SKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSL 102 (165)
Q Consensus 40 ~~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~ 102 (165)
+..++.+|.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||||||++.|+
T Consensus 88 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 88 GEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 345677889999999999999999999999999999999999999999999999999998864
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=102.33 Aligned_cols=56 Identities=46% Similarity=0.658 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCC
Q psy17007 50 TVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFST 105 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~ 105 (165)
..+|..|+.+||..|..++||+..++..||..+||++.+|++||||||++.++...
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 46789999999999999999999999999999999999999999999999987553
No 65
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2e-17 Score=106.98 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccC
Q psy17007 51 VFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~ 104 (165)
.||.+|+.+||..|..++||+..++..||..+||++.||++||||||++.+...
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 789999999999999999999999999999999999999999999999886543
No 66
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.69 E-value=1.7e-17 Score=106.50 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=53.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccC
Q psy17007 46 RKARTVFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 46 rr~R~~~s~~q~~~Le~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~ 104 (165)
++.|++|+.+|+.+|+.+|.. ++||+..++..||..+||+..||++||+|||++.++..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 345667999999999999999 99999999999999999999999999999999997654
No 67
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.69 E-value=9.7e-18 Score=108.54 Aligned_cols=59 Identities=25% Similarity=0.316 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccC
Q psy17007 46 RKARTVFSDHQLTGLEKRF---EAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 46 rr~R~~~s~~q~~~Le~~f---~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~ 104 (165)
++.|+.|+..|+.+|+.+| ..++||+..+++.||..+||++.+|++||+|||++.+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 6789999999999999999 8999999999999999999999999999999999987643
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.69 E-value=7.3e-18 Score=102.14 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccc
Q psy17007 53 SDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSL 102 (165)
Q Consensus 53 s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~ 102 (165)
+.+|+.+||..|..++||+..++++||..+||++.+|++||+|||++.+.
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 78999999999999999999999999999999999999999999988764
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=2.1e-17 Score=100.19 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=47.3
Q ss_pred HHHHHHHHHHH-HhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCC
Q psy17007 54 DHQLTGLEKRF-EAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFST 105 (165)
Q Consensus 54 ~~q~~~Le~~f-~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~ 105 (165)
..|+.+||..| ..+.||+..++..||..+||+++||++||||||++++....
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~ 61 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGP 61 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCC
Confidence 45899999999 57999999999999999999999999999999999986543
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.66 E-value=6.4e-17 Score=116.39 Aligned_cols=65 Identities=22% Similarity=0.211 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFST 105 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~ 105 (165)
...+.+|.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||++.+....
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 44567889999999999999999999999999999999999999999999999999999976543
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.65 E-value=4.1e-17 Score=116.31 Aligned_cols=61 Identities=26% Similarity=0.327 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 43 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 43 ~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
++.+|.|+.|+..|+..||..|..++||+..++..||..+||++.+|++||||||++.++.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4667889999999999999999999999999999999999999999999999999998763
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=9.4e-16 Score=94.34 Aligned_cols=54 Identities=20% Similarity=0.200 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcccc
Q psy17007 50 TVFSDHQLTGLEKRFE---AQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLF 103 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~---~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~ 103 (165)
..|+.+|+.+|+.+|. .++||+..+++.||..+||+..||++||+|+|++.++.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~ 59 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP 59 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHH
Confidence 3799999999999999 99999999999999999999999999999999988653
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.56 E-value=7.6e-16 Score=113.04 Aligned_cols=62 Identities=24% Similarity=0.323 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc---------------------cchhhhhhhhccCCCC
Q psy17007 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQ---------------------LSETQVKTWFQNRLPF 99 (165)
Q Consensus 41 ~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~---------------------l~~~~V~~WF~nrr~~ 99 (165)
..++.||.|+.|+..|+.+|+..|..++||+..+|+.||..+| |++.+|++||+|||++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 4467789999999999999999999999999999999999999 9999999999999988
Q ss_pred ccc
Q psy17007 100 GSL 102 (165)
Q Consensus 100 ~~~ 102 (165)
.+.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 753
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-15 Score=91.54 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCc
Q psy17007 54 DHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFG 100 (165)
Q Consensus 54 ~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~ 100 (165)
++|+..|+.+|..+++|+.+++..||..+||+.++|++||||||+..
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 57899999999999999999999999999999999999999999754
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.52 E-value=8.6e-15 Score=108.66 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc---------------------cchhhhhhhhccCC
Q psy17007 39 GSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQ---------------------LSETQVKTWFQNRL 97 (165)
Q Consensus 39 ~~~~~~~rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~---------------------l~~~~V~~WF~nrr 97 (165)
....++.||.|+.|+..|+.+|+..|..++||+..+|++||..+| |++.+|++||+|||
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 445677889999999999999999999999999999999999998 89999999999999
Q ss_pred CCc
Q psy17007 98 PFG 100 (165)
Q Consensus 98 ~~~ 100 (165)
+.+
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 876
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=88.52 Aligned_cols=53 Identities=23% Similarity=0.232 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccc
Q psy17007 50 TVFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQVKTWFQNRLPFGSL 102 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~ 102 (165)
..|+.+++.+|+.+|.. ++||+..++..||..+||++.||++||+|+|.+.+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk 65 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLP 65 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhh
Confidence 46899999999999987 999999999999999999999999999999988753
No 77
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=2.4e-13 Score=89.42 Aligned_cols=79 Identities=29% Similarity=0.344 Sum_probs=51.2
Q ss_pred HhccchhhhhhhhccCCCCccccCCCCCccCccccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhh
Q psy17007 81 ALQLSETQVKTWFQNRLPFGSLFSTSPHELGSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160 (165)
Q Consensus 81 ~l~l~~~~V~~WF~nrr~~~~~~~~~~~~~~~~~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~q 160 (165)
.++++..+|..||++.|...+... .........++.|+.||.+|+..||..|..++||+..++.+||..+||++.|
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~~~----~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~q 77 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKTAK----VSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQ 77 (97)
T ss_dssp ------CCCCGGGGC------------------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHH
T ss_pred CCCCCCcccccccccccCCCCCCC----CCCCCCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHH
Confidence 456778899999999887654321 1112234566789999999999999999999999999999999999999999
Q ss_pred hhh
Q psy17007 161 LFY 163 (165)
Q Consensus 161 Vq~ 163 (165)
|+-
T Consensus 78 V~v 80 (97)
T 1b72_A 78 VKI 80 (97)
T ss_dssp HHH
T ss_pred hHH
Confidence 984
No 78
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.29 E-value=1.7e-12 Score=104.83 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=52.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCcc
Q psy17007 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGS 101 (165)
Q Consensus 46 rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~ 101 (165)
++.++.++..|+..|+..|..++||+..+|++||..+||+++||++||+|||+|.|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34577899999999999999999999999999999999999999999999999874
No 79
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.12 E-value=5e-11 Score=73.62 Aligned_cols=50 Identities=30% Similarity=0.487 Sum_probs=46.1
Q ss_pred ccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 114 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 114 ~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
....++.++.||.+|+..||..|..++||+..++.+||..+||++.||+-
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITI 53 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhH
Confidence 34567789999999999999999999999999999999999999999974
No 80
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=7e-11 Score=72.96 Aligned_cols=50 Identities=44% Similarity=0.713 Sum_probs=46.1
Q ss_pred ccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 114 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 114 ~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
....++.++.||.+|+..||..|..++||+..++++||..+||++.||+.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKI 53 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 34567789999999999999999999999999999999999999999984
No 81
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.10 E-value=1e-10 Score=74.05 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=48.3
Q ss_pred CccccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 111 GSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 111 ~~~~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
+....+.++.|+.||.+|+..|+..|..++||+..++++||..+||++.||+.
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~ 63 (80)
T 2da3_A 11 GEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQV 63 (80)
T ss_dssp CCCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHH
Confidence 34456677889999999999999999999999999999999999999999985
No 82
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=8.2e-11 Score=74.53 Aligned_cols=53 Identities=55% Similarity=0.850 Sum_probs=48.0
Q ss_pred CccccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 111 GSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 111 ~~~~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
+....+.++.++.||.+|+.+||..|..++||+..++++||..+||++.||+-
T Consensus 11 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 63 (80)
T 2dmt_A 11 GTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKT 63 (80)
T ss_dssp CCCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeee
Confidence 34455677889999999999999999999999999999999999999999984
No 83
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.09 E-value=8.2e-11 Score=72.62 Aligned_cols=50 Identities=30% Similarity=0.379 Sum_probs=46.2
Q ss_pred ccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 114 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 114 ~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
....++.++.||.+|+..||..|..++||+..++++||..+||++.||+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVV 53 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHH
Confidence 34567789999999999999999999999999999999999999999984
No 84
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.9e-11 Score=72.98 Aligned_cols=49 Identities=33% Similarity=0.527 Sum_probs=45.6
Q ss_pred cccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...++.++.||.+|+..||..|..++||+..++++||..+||++.||+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEV 53 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeeh
Confidence 3456789999999999999999999999999999999999999999984
No 85
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.08 E-value=1e-10 Score=73.51 Aligned_cols=54 Identities=33% Similarity=0.368 Sum_probs=48.2
Q ss_pred cCccccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 110 LGSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 110 ~~~~~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
........++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 6 ~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 59 (77)
T 1puf_A 6 NWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKI 59 (77)
T ss_dssp TSCCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 334445667789999999999999999999999999999999999999999984
No 86
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.08 E-value=1.3e-10 Score=73.67 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=46.2
Q ss_pred ccccccccccccccchhhhhhhccc----cCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 114 HCRRRKARTVFSDHQLTGLEKRFEA----QRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 114 ~~~~rr~rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
..+.++.|+.||.+|+..||..|+. ++||+..++++||..|||++.|||-
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~Vkv 67 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKV 67 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccC
Confidence 3456778999999999999999999 9999999999999999999999984
No 87
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.08 E-value=6.6e-11 Score=73.86 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=41.7
Q ss_pred cccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhh
Q psy17007 119 KARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLF 162 (165)
Q Consensus 119 r~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq 162 (165)
..+..||.+|+.+|++.|..++||+..++++||..+||++.||+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIk 48 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 35677999999999999999999999999999999999999997
No 88
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.07 E-value=1.3e-10 Score=70.27 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=46.3
Q ss_pred cccccccccccccchhhhhhhccc-cCCCCHHHHHHHHHHcCCChhhhhhc
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEA-QRYLSTPERVELATALQLSETQLFYV 164 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~lgl~~~qVq~~ 164 (165)
...++.||.|+.+|+..|+.+|+. ++||+.++++.||.++||++++||-+
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVW 55 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKF 55 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHh
Confidence 356778999999999999999999 99999999999999999999999853
No 89
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.07 E-value=7.8e-11 Score=70.01 Aligned_cols=46 Identities=46% Similarity=0.711 Sum_probs=43.3
Q ss_pred ccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 118 rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 46 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKI 46 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhh
Confidence 3568999999999999999999999999999999999999999984
No 90
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.05 E-value=1.4e-10 Score=72.91 Aligned_cols=51 Identities=43% Similarity=0.645 Sum_probs=46.7
Q ss_pred cccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 113 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 113 ~~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.+.+.++.++.||.+|+..||..|..++||+..++.+||..+||++.||+-
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 55 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKI 55 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 345567789999999999999999999999999999999999999999974
No 91
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.05 E-value=7.8e-11 Score=70.78 Aligned_cols=47 Identities=36% Similarity=0.633 Sum_probs=41.8
Q ss_pred cccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 117 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 117 ~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 49 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKI 49 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 46678999999999999999999999999999999999999999984
No 92
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.05 E-value=7.4e-11 Score=72.82 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=46.2
Q ss_pred ccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 114 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 114 ~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
....++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKH 53 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 34567789999999999999999999999999999999999999999974
No 93
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.04 E-value=9.9e-11 Score=70.77 Aligned_cols=47 Identities=40% Similarity=0.651 Sum_probs=43.2
Q ss_pred cccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 117 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 117 ~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 49 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKI 49 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhH
Confidence 45678999999999999999999999999999999999999999984
No 94
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.04 E-value=1.7e-10 Score=71.24 Aligned_cols=48 Identities=48% Similarity=0.642 Sum_probs=44.7
Q ss_pred ccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 116 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 116 ~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
..++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKT 53 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhH
Confidence 455678999999999999999999999999999999999999999984
No 95
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.04 E-value=2e-10 Score=72.76 Aligned_cols=49 Identities=31% Similarity=0.487 Sum_probs=45.5
Q ss_pred cccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...++.++.||.+|+..||..|..++||+..++.+||..+||++.||+-
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 53 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 53 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 3456789999999999999999999999999999999999999999974
No 96
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.04 E-value=1.8e-10 Score=72.93 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=45.6
Q ss_pred cccccccccccccccchhhhhhhccc-----cCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 113 KHCRRRKARTVFSDHQLTGLEKRFEA-----QRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 113 ~~~~~rr~rt~ft~~Q~~~Le~~F~~-----~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...+.++.|+.||.+|+..|| +|.. ++||+..++++||..|||++.|||-
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkv 67 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKI 67 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccc
Confidence 345567889999999999999 8999 9999999999999999999999984
No 97
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.04 E-value=2.4e-10 Score=72.95 Aligned_cols=52 Identities=40% Similarity=0.523 Sum_probs=47.6
Q ss_pred ccccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 112 SKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 112 ~~~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
....+.++.|+.||.+|+..||..|..++||+..++..||..+||++.||+.
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 68 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKT 68 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3445677889999999999999999999999999999999999999999984
No 98
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.04 E-value=1.2e-10 Score=71.01 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=44.9
Q ss_pred ccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 116 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 116 ~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
+.++.++.||.+|+..||..|..++||+..++++||..+||++.||+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 49 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRV 49 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 356789999999999999999999999999999999999999999974
No 99
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.04 E-value=1.7e-10 Score=73.08 Aligned_cols=49 Identities=33% Similarity=0.421 Sum_probs=45.9
Q ss_pred cccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...++.|+.||.+|+..||..|..++||+..++++||..+||++.||+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQV 53 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhh
Confidence 4567789999999999999999999999999999999999999999974
No 100
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.03 E-value=9.8e-11 Score=70.57 Aligned_cols=47 Identities=45% Similarity=0.606 Sum_probs=40.9
Q ss_pred cccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 117 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 117 ~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 49 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKT 49 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 45678999999999999999999999999999999999999999974
No 101
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.03 E-value=1.2e-10 Score=69.78 Aligned_cols=46 Identities=43% Similarity=0.653 Sum_probs=43.0
Q ss_pred ccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 118 rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 47 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKV 47 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 4578999999999999999999999999999999999999999974
No 102
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.9e-10 Score=72.83 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=45.8
Q ss_pred cccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQV 53 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 4467789999999999999999999999999999999999999999984
No 103
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.02 E-value=1.1e-10 Score=70.08 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=39.0
Q ss_pred ccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 116 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 116 ~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
+.++.++.||.+|+..|+..|..++||+..++.+||..+||++.||+-
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~ 51 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRV 51 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 456778999999999999999999999999999999999999999974
No 104
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.02 E-value=1.9e-10 Score=70.59 Aligned_cols=47 Identities=34% Similarity=0.588 Sum_probs=44.2
Q ss_pred cccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 117 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 117 ~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 48 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKI 48 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhH
Confidence 45678999999999999999999999999999999999999999974
No 105
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.01 E-value=1.7e-10 Score=71.80 Aligned_cols=49 Identities=24% Similarity=0.464 Sum_probs=45.7
Q ss_pred cccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...++.++.||.+|+..||..|..++||+..++.+||..+||++.||+-
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 53 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 53 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHH
Confidence 4567789999999999999999999999999999999999999999974
No 106
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.00 E-value=2.6e-10 Score=67.62 Aligned_cols=46 Identities=52% Similarity=0.780 Sum_probs=43.6
Q ss_pred ccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 118 rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
++.++.||.+|+..|+..|..++||+..++++||..+||++.||+.
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 48 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKI 48 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHH
Confidence 5678999999999999999999999999999999999999999974
No 107
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=98.99 E-value=2.9e-10 Score=69.50 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=43.6
Q ss_pred ccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 118 rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
++.++.||.+|+..|+..|..++||+..++.+||..+||++.||+.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 47 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQI 47 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 5678999999999999999999999999999999999999999974
No 108
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=98.98 E-value=3.7e-10 Score=72.75 Aligned_cols=50 Identities=36% Similarity=0.546 Sum_probs=42.7
Q ss_pred ccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 114 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 114 ~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
....++.|+.||.+|+..||..|..++||+..++.+||..+||++.||+-
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 74 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 74 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhH
Confidence 34567789999999999999999999999999999999999999999984
No 109
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=98.97 E-value=2.4e-10 Score=68.39 Aligned_cols=44 Identities=32% Similarity=0.449 Sum_probs=39.9
Q ss_pred ccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 120 ARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 120 ~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.|+.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 45 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQV 45 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 57899999999999999999999999999999999999999974
No 110
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.97 E-value=3.1e-10 Score=69.65 Aligned_cols=47 Identities=49% Similarity=0.753 Sum_probs=44.0
Q ss_pred cccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 117 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 117 ~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.++.++.||.+|+..||..|..++||+..++.+||..+||++.+|+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 48 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKI 48 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHH
Confidence 35678999999999999999999999999999999999999999974
No 111
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=98.96 E-value=2e-10 Score=70.52 Aligned_cols=46 Identities=37% Similarity=0.592 Sum_probs=43.7
Q ss_pred ccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 118 rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 48 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 48 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhH
Confidence 5678999999999999999999999999999999999999999974
No 112
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.96 E-value=4.7e-10 Score=70.00 Aligned_cols=50 Identities=32% Similarity=0.468 Sum_probs=45.9
Q ss_pred ccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 114 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 114 ~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
..+.++.++.||.+|+..|+..|..++||+..++.+||..+||++.||+.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 55 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQV 55 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 34556789999999999999999999999999999999999999999974
No 113
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=98.96 E-value=3.6e-10 Score=71.72 Aligned_cols=50 Identities=36% Similarity=0.522 Sum_probs=45.5
Q ss_pred ccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 114 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 114 ~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
..+.++.++.||.+|+..|+..|..++||+..++.+||..+||++.||+.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 64 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQV 64 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 45567789999999999999999999999999999999999999999984
No 114
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=5.3e-10 Score=69.91 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=42.6
Q ss_pred ccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 118 rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...+..||.+|+.+||..|..++||+..++.+||..+||++.||+.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDS 53 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 3456789999999999999999999999999999999999999984
No 115
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=98.94 E-value=6.7e-10 Score=72.29 Aligned_cols=51 Identities=39% Similarity=0.628 Sum_probs=46.7
Q ss_pred cccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 113 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 113 ~~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...+.++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 63 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKT 63 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhccc
Confidence 344567789999999999999999999999999999999999999999984
No 116
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=4.2e-10 Score=70.54 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=43.5
Q ss_pred cccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 117 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 117 ~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
....++.||.+|+..||..|..++||+..++++||..+||++.||+.
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~ 54 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRK 54 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhH
Confidence 34458899999999999999999999999999999999999999984
No 117
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.6e-10 Score=72.17 Aligned_cols=50 Identities=22% Similarity=0.229 Sum_probs=46.1
Q ss_pred ccccccccccccccchhhhhhhcccc----CCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 114 HCRRRKARTVFSDHQLTGLEKRFEAQ----RYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 114 ~~~~rr~rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
..+.++.|+.||.+|+..||..|+.+ +||+..++++||..+||++.||+.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~v 58 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRT 58 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhH
Confidence 34567789999999999999999999 999999999999999999999984
No 118
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=98.93 E-value=4.1e-10 Score=66.44 Aligned_cols=42 Identities=43% Similarity=0.643 Sum_probs=38.9
Q ss_pred ccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 122 TVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 122 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
+.||.+|+..||..|..++||+..++.+||..+||++.||+-
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 43 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKT 43 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhH
Confidence 579999999999999999999999999999999999999984
No 119
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=98.93 E-value=2.1e-10 Score=70.35 Aligned_cols=47 Identities=34% Similarity=0.512 Sum_probs=44.4
Q ss_pred cccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 117 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 117 ~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 49 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRV 49 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 46778999999999999999999999999999999999999999974
No 120
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=98.93 E-value=4.9e-10 Score=71.10 Aligned_cols=49 Identities=37% Similarity=0.565 Sum_probs=41.8
Q ss_pred cccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...++.++.||.+|+..||..|..++||+..++.+||..+||++.||+.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 66 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKI 66 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 3456789999999999999999999999999999999999999999974
No 121
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.91 E-value=7.4e-10 Score=68.66 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=42.9
Q ss_pred ccccccccccchhhhhhhccc-cCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 118 RKARTVFSDHQLTGLEKRFEA-QRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 118 rr~rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.+.++.||.+|+..||..|.. ++||+..++.+||..+||++.||+.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~ 48 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 48 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 356889999999999999996 9999999999999999999999984
No 122
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.90 E-value=1.2e-09 Score=66.03 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=43.9
Q ss_pred cccccccccccchhhhhhhc---cccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 117 RRKARTVFSDHQLTGLEKRF---EAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 117 ~rr~rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.++.++.|+.+|+..|+..| ..++||+..++.+||..+||++.||+-
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~ 52 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 52 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 45678999999999999999 999999999999999999999999974
No 123
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.90 E-value=8e-10 Score=68.70 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=43.0
Q ss_pred ccccccccccchhhhhhhccc-cCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 118 RKARTVFSDHQLTGLEKRFEA-QRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 118 rr~rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.+.++.||.+|+..||..|.. ++||+..++.+||..+||++.||+.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~ 49 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 49 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 457899999999999999995 9999999999999999999999984
No 124
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.89 E-value=1.1e-09 Score=68.15 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=44.2
Q ss_pred cccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 117 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 117 ~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
..+.++.||.+|+..|+..|..++||+..++++||..+||++.||+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 52 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKK 52 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeee
Confidence 45678999999999999999999999999999999999999999974
No 125
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.86 E-value=1.7e-09 Score=67.22 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=44.6
Q ss_pred cccccccccccccchhhhhhhccc---cCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...++.++.|+.+|+..|+..|.. ++||+..++++||..+||++.||+-
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~ 56 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNN 56 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 345677899999999999999976 9999999999999999999999974
No 126
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=98.86 E-value=1.2e-09 Score=71.53 Aligned_cols=51 Identities=20% Similarity=0.140 Sum_probs=43.3
Q ss_pred cccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 113 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 113 ~~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.....++.++.||.+|+..|+..|..++||+..++++||..+||++.||+.
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 71 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVS 71 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeee
Confidence 344556788999999999999999999999999999999999999999974
No 127
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=98.83 E-value=1.8e-09 Score=64.52 Aligned_cols=43 Identities=26% Similarity=0.276 Sum_probs=41.0
Q ss_pred cccccccchhhhhhhccc---cCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 121 RTVFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 121 rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
++.||.+|+..|+..|.. ++||+..++++||..+||++.||+-
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~ 47 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 47 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 578999999999999999 9999999999999999999999974
No 128
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.83 E-value=4.6e-09 Score=65.05 Aligned_cols=46 Identities=22% Similarity=0.178 Sum_probs=42.5
Q ss_pred ccccccccccchhhhhhhc-cccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 118 RKARTVFSDHQLTGLEKRF-EAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 118 rr~rt~ft~~Q~~~Le~~F-~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.+.+..++.+|+.+||..| ..++||+..++++||..+||++.|||-
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqv 55 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQC 55 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcch
Confidence 4556779999999999999 999999999999999999999999984
No 129
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=98.81 E-value=1.9e-09 Score=65.09 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=37.8
Q ss_pred ccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 124 FSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 124 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
-|.+|+.+||..|..++||+..++++||..+||++.||+-
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkv 50 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKK 50 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhH
Confidence 4679999999999999999999999999999999999974
No 130
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=98.81 E-value=2.9e-09 Score=66.12 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=43.3
Q ss_pred ccccccccccchhhhhhhc---cccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 118 RKARTVFSDHQLTGLEKRF---EAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 118 rr~rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
++.++.||.+|+..|+..| ..++||+..++..||..+||++.||+-
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~ 50 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 4678999999999999999 999999999999999999999999974
No 131
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.78 E-value=5.7e-09 Score=67.16 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=39.7
Q ss_pred cccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 123 VFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 123 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.||.+|+.+||+.|..++||+..++.+||..+||++.||+-
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkv 57 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDA 57 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCee
Confidence 79999999999999999999999999999999999999973
No 132
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=7.2e-09 Score=66.82 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=40.3
Q ss_pred cccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 121 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 121 rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...||.+|+.+||..|..++||+..++++||..+||++.||+.
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~v 59 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDS 59 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccH
Confidence 4459999999999999999999999999999999999999984
No 133
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.76 E-value=3.9e-09 Score=68.89 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=45.7
Q ss_pred cccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcC---------------CChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQ---------------LSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lg---------------l~~~qVq~ 163 (165)
.+.++.|+.||.+|+..||..|+.++||+..++++||..+| |++.+|+.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~ 68 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 68 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHH
Confidence 45677899999999999999999999999999999999999 99999985
No 134
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=98.74 E-value=6.7e-09 Score=66.10 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=44.3
Q ss_pred cccccccccccccchhhhhhhccc---cCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...++.++.|+.+|+..|+..|.. ++||+..++++||..+||++.||+-
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~ 56 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISN 56 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 445677899999999999999877 6999999999999999999999974
No 135
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=98.73 E-value=6.4e-09 Score=66.69 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=42.9
Q ss_pred ccccccccccchhhhhhhc---cccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 118 RKARTVFSDHQLTGLEKRF---EAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 118 rr~rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
++.++.|+.+|+..|+..| ..++||+..++.+||..+||++.||+-
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~ 50 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 4678999999999999999 999999999999999999999999974
No 136
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=7.2e-09 Score=62.71 Aligned_cols=43 Identities=14% Similarity=0.039 Sum_probs=39.9
Q ss_pred cccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 121 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 121 rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...++.+|+..||..|..++||+..++.+||..+||++.||+-
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqv 49 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKK 49 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCc
Confidence 4557799999999999999999999999999999999999984
No 137
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=9.3e-09 Score=67.52 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=45.1
Q ss_pred cccccccccccccchhhhhhhccccCCCCHHHHHHHHHHc---------------------CCChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATAL---------------------QLSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l---------------------gl~~~qVq~ 163 (165)
.+.++.|+.|+..|+.+||+.|+.++||+..+|++||..+ +|++.+|+.
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~ 73 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYN 73 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceee
Confidence 4567789999999999999999999999999999999999 799999874
No 138
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=98.72 E-value=6.9e-09 Score=66.59 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=44.9
Q ss_pred cccccccccccccchhhhhhhccc---cCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...++.++.|+.+|+..|+..|.. ++||+..++.+||..+||++.||+-
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~ 76 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 76 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 345566889999999999999999 9999999999999999999999974
No 139
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.70 E-value=8.5e-09 Score=67.70 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=41.6
Q ss_pred cccccccccccccchhhhhhhccccCCCCHHHHHHHHHH------------------cC---CChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATA------------------LQ---LSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~------------------lg---l~~~qVq~ 163 (165)
.+.++.|+.||..|+..||..|+.++||+..+|++||.. +| |++.+|+.
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~v 76 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYN 76 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeee
Confidence 346778999999999999999999999999999999999 99 99999975
No 140
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=98.65 E-value=1.1e-08 Score=71.86 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=43.5
Q ss_pred cccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 113 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 113 ~~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...+.++.|+.||.+|+..||..|..++||+..++.+||..+||++.||+-
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 133 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRV 133 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchh
Confidence 345567789999999999999999999999999999999999999999974
No 141
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=98.65 E-value=1.5e-08 Score=71.55 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=46.3
Q ss_pred ccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 114 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 114 ~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
..+.++.|+.||.+|+..||..|..++||+..++.+||..+||++.||+-
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 139 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRV 139 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHH
Confidence 34567789999999999999999999999999999999999999999974
No 142
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.65 E-value=1.2e-08 Score=64.86 Aligned_cols=45 Identities=24% Similarity=0.244 Sum_probs=41.3
Q ss_pred cccccccccchhhhhhhccc---cCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 119 KARTVFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 119 r~rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
+.++.|+.+|+..|+..|.. ++||+..++.+||..+||++.||+-
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~ 51 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 51 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHccc
Confidence 34667999999999999999 9999999999999999999999974
No 143
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.62 E-value=1.9e-08 Score=61.69 Aligned_cols=42 Identities=45% Similarity=0.683 Sum_probs=39.5
Q ss_pred ccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 122 TVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 122 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
..+|..|+.+||..|..++||+..++.+||..+||++.|||-
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqv 50 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 50 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheee
Confidence 357899999999999999999999999999999999999984
No 144
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=98.61 E-value=1.6e-08 Score=72.08 Aligned_cols=49 Identities=24% Similarity=0.315 Sum_probs=42.8
Q ss_pred cccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.+.++.|+.||.+|+..||..|..++||+..++.+||..+||++.||+-
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 147 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRV 147 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhH
Confidence 4667889999999999999999999999999999999999999999984
No 145
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.60 E-value=1.8e-08 Score=71.99 Aligned_cols=50 Identities=22% Similarity=0.261 Sum_probs=42.8
Q ss_pred ccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 114 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 114 ~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
....++.|+.||.+|+..|+..|..++||+..++.+||..+||++.||+-
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~ 143 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSN 143 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhh
Confidence 44567789999999999999999999999999999999999999999984
No 146
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=98.60 E-value=1.7e-08 Score=72.27 Aligned_cols=50 Identities=30% Similarity=0.235 Sum_probs=39.0
Q ss_pred ccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 114 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 114 ~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
..+.++.|+.||.+|+..||..|..++||+..++.+||..+||++.||+-
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 145 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRV 145 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhh
Confidence 45667789999999999999999999999999999999999999999974
No 147
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.58 E-value=3.7e-08 Score=59.37 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=35.6
Q ss_pred cccchhhhhhhc-cccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 125 SDHQLTGLEKRF-EAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 125 t~~Q~~~Le~~F-~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
...|+.+||+.| ..++||+..++.+||..+||+++|||-
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkv 47 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQR 47 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHH
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHH
Confidence 356799999999 679999999999999999999999984
No 148
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.55 E-value=5.2e-08 Score=69.04 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=45.5
Q ss_pred cccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.+.++.|+.|+..|+..||..|..++||+..++.+||..+||++.||+-
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~v 142 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRV 142 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheee
Confidence 3566789999999999999999999999999999999999999999974
No 149
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.43 E-value=1.1e-07 Score=57.93 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=37.6
Q ss_pred ccccccchhhhhhhcc---ccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 122 TVFSDHQLTGLEKRFE---AQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 122 t~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
..|+.+|+..|+..|. .++||+..++++||..+||++.||+-
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~ 47 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNN 47 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhh
Confidence 3699999999999999 99999999999999999999999973
No 150
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.42 E-value=5.8e-08 Score=71.11 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=43.3
Q ss_pred cccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcC---------------------CChhhhhh
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQ---------------------LSETQLFY 163 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lg---------------------l~~~qVq~ 163 (165)
.+.++.|+.|+..|+..|++.|+.++||+..+|++||..++ |++.+|+.
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~ 182 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYN 182 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccch
Confidence 45678899999999999999999999999999999999999 99999974
No 151
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.31 E-value=3.9e-08 Score=52.47 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=15.6
Q ss_pred hhhhhhhccCCCCccccC
Q psy17007 87 TQVKTWFQNRLPFGSLFS 104 (165)
Q Consensus 87 ~~V~~WF~nrr~~~~~~~ 104 (165)
+||+|||||||+|.++..
T Consensus 1 rQVkIWFQNRRaK~Kk~~ 18 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRV 18 (37)
T ss_dssp CCTTTTTTCSHHHHTSSH
T ss_pred CCceeccHHHHHHHHHHh
Confidence 589999999999997654
No 152
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.30 E-value=2.5e-07 Score=68.65 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=37.5
Q ss_pred ccccccccccccccchhhhhhhccccCCCCHHHHHHHHHHcC
Q psy17007 114 HCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQ 155 (165)
Q Consensus 114 ~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lg 155 (165)
..+.++.|+.|+..|+..|++.|+.++||+..+|++||..+|
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 456778899999999999999999999999999999999987
No 153
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.6e-06 Score=52.66 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=35.7
Q ss_pred ccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhh
Q psy17007 126 DHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLF 162 (165)
Q Consensus 126 ~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq 162 (165)
++|+..|+..|+.|++|+.+++..||..+||+++.||
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVr 50 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVK 50 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 6889999999999999999999999999999999987
No 154
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=97.84 E-value=9e-06 Score=51.95 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=37.6
Q ss_pred cccccchhhhhhhccc---cCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 123 VFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 123 ~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
.|+.++...|+.-|.. ++||+..++.+||..+||++.||+-
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~ 54 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCN 54 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 4788899999999876 9999999999999999999999973
No 155
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=97.82 E-value=5.3e-06 Score=66.61 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=42.2
Q ss_pred cccccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 119 KARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 119 r~rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
+.++.++..|+..|++.|+.++||+..+|++||..+||+++|||-
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~ 411 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRV 411 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhH
Confidence 557789999999999999999999999999999999999999973
No 156
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.91 E-value=0.00089 Score=40.37 Aligned_cols=40 Identities=33% Similarity=0.546 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
.++|+.+|...+.+...+.+.|+.+.+|+..||+-||-.|
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999654
No 157
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=88.02 E-value=2.1 Score=28.19 Aligned_cols=91 Identities=12% Similarity=0.206 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCCCCccCccccccccccccccccch
Q psy17007 50 TVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTSPHELGSKHCRRRKARTVFSDHQL 129 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~~~~~~~~~~~~rr~rt~ft~~Q~ 129 (165)
..++.++...+...+... . ....+|..+|++...|..|+..-+.... .. . ......+++++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~~~~~g~--------~~---~--~gr~~~l~~~~~ 66 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDPVSYGT--------SK---R--APRRKALSVRDE 66 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHSGGGTTC--------CC---C--CCCCCSSCHHHH
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHcccccCC--------cC---C--CCCCCcCCHHHH
Confidence 467888887777777533 2 2567799999999999999974322110 00 0 111234666666
Q ss_pred hhhhhhccccCCCCHHHHHHHHHHcC--CChhhhh
Q psy17007 130 TGLEKRFEAQRYLSTPERVELATALQ--LSETQLF 162 (165)
Q Consensus 130 ~~Le~~F~~~~yp~~~~r~~La~~lg--l~~~qVq 162 (165)
..+... ..++..+. .+|+..+| ++...|.
T Consensus 67 ~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~ 97 (141)
T 1u78_A 67 RNVIRA-ASNSCKTA---RDIRNELQLSASKRTIL 97 (141)
T ss_dssp HHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHH
T ss_pred HHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHH
Confidence 666555 33443333 45666777 5555554
No 158
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=85.77 E-value=1.1 Score=25.34 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhcc
Q psy17007 49 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 49 R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~n 95 (165)
|..|+.+....+...+... .........+|..+|++...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 4578998877775554433 221112567899999999999999753
No 159
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=85.71 E-value=2.5 Score=25.91 Aligned_cols=45 Identities=11% Similarity=0.309 Sum_probs=32.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhcc
Q psy17007 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 46 rr~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~n 95 (165)
++.+..|+.++.......+. ... ....+|..+|++...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 34566899988766656664 332 2557899999999999999853
No 160
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=85.54 E-value=5.2 Score=25.46 Aligned_cols=92 Identities=9% Similarity=-0.028 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCCCCccCccccccccccccccccchh
Q psy17007 51 VFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTSPHELGSKHCRRRKARTVFSDHQLT 130 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~~~~~~~~~~~~rr~rt~ft~~Q~~ 130 (165)
.++.++...+...+.. .+ + ...+|..+|++...|..|...-+.... ...... .......+++++..
T Consensus 17 ~~s~~~r~~i~~~~~~-g~-s---~~~ia~~lgis~~Tv~~w~~~~~~~g~--------~~~~~~-~g~~~~~l~~~~~~ 82 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GI-R---PCVISRQLRVSHGCVSKILNRYQETGS--------IRPGVI-GGSKPRIATPEIEN 82 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TC-C---HHHHHHHHTCCHHHHHHHHHHHHHHCC--------SSCCCC-SCCCCCSSCSTHHH
T ss_pred cCCHHHHHHHHHHHHc-CC-C---HHHHHHHHCcCHHHHHHHHHHHHhhCC--------cccccC-CCCCCCcCCHHHHH
Confidence 5788877777766653 33 2 456899999999999999964321110 000111 11123356777777
Q ss_pred hhhhhccccCCCCHHHHHHHHHHcCC
Q psy17007 131 GLEKRFEAQRYLSTPERVELATALQL 156 (165)
Q Consensus 131 ~Le~~F~~~~yp~~~~r~~La~~lgl 156 (165)
.+......++..+..+......+.|+
T Consensus 83 ~i~~~~~~~~~~s~~~i~~~l~~~g~ 108 (128)
T 1pdn_C 83 RIEEYKRSSPGMFSWEIREKLIREGV 108 (128)
T ss_dssp HHHHTTTTCTTCCHHHHHHHHHHTSS
T ss_pred HHHHHHHhCcchHHHHHHHHHHHcCC
Confidence 78777777666665554332222275
No 161
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=82.32 E-value=2 Score=28.14 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCC
Q psy17007 48 ARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLP 98 (165)
Q Consensus 48 ~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~ 98 (165)
.|..||.++...+...+..+..... ..+|..+|++...|..|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 5678999999888888766665533 35789999999999999977544
No 162
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=80.96 E-value=10 Score=25.53 Aligned_cols=85 Identities=8% Similarity=-0.006 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCCCCccCccccccccccccccccch
Q psy17007 50 TVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTSPHELGSKHCRRRKARTVFSDHQL 129 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~~~~~~~~~~~~rr~rt~ft~~Q~ 129 (165)
..++.++...+...+... . ....+|..+|++...|..|...-+.... ...... ..+.+..+++++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r~~~~G~--------~~~~~r-~gr~~~~~~~~~~ 89 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGRYYETGS--------IRPGVI-GGSKPKVATPKVV 89 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCCSSTTSC--------CCCCCC-CCCCCCCCCTTHH
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHHHhcCC--------ccCCCC-CCCCCCCCCHHHH
Confidence 368888887777777533 2 2456799999999999999975332211 011111 1112345677777
Q ss_pred hhhhhhccccCCCCHHHHH
Q psy17007 130 TGLEKRFEAQRYLSTPERV 148 (165)
Q Consensus 130 ~~Le~~F~~~~yp~~~~r~ 148 (165)
..+...+..++..+..+..
T Consensus 90 ~~I~~~~~~~~~~s~~~i~ 108 (159)
T 2k27_A 90 EKIGDYKRQNPTMFAWEIR 108 (159)
T ss_dssp HHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHHHHCccchHHHHH
Confidence 7777777666656655443
No 163
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=77.83 E-value=0.48 Score=33.13 Aligned_cols=30 Identities=7% Similarity=-0.075 Sum_probs=21.5
Q ss_pred cccccccccccccchhhhhhhccccCCCCH
Q psy17007 115 CRRRKARTVFSDHQLTGLEKRFEAQRYLST 144 (165)
Q Consensus 115 ~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~~ 144 (165)
...++.++.|+..|+..|+..|+.++||+.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 345677899999999999999999999864
No 164
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=73.69 E-value=6.2 Score=24.35 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhccchhhhhhhhcc
Q psy17007 49 RTVFSDHQLTGLEKRFEAQ-RYLSTPERVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 49 R~~~s~~q~~~Le~~f~~~-~~p~~~~~~~la~~l~l~~~~V~~WF~n 95 (165)
|..|+.++.......+... .. ....+|..+|++...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3578888877666655433 22 2567899999999999999864
No 165
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=70.77 E-value=17 Score=24.09 Aligned_cols=84 Identities=10% Similarity=0.018 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCccccCCCCCccCccccccccccccccccch
Q psy17007 50 TVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFGSLFSTSPHELGSKHCRRRKARTVFSDHQL 129 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~~~~~~~~~~~~~~~~~~rr~rt~ft~~Q~ 129 (165)
..++.++.......+.. .. ....+|..+|++...|..|...-+.... ...... ..+....+++++.
T Consensus 31 ~~~s~e~r~~iv~~~~~-G~----s~~~iA~~lgis~~TV~rw~~~~~~~G~--------~~~~~r-~gr~~~~~~~~~~ 96 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ-GV----RPCDISRQLRVSHGCVSKILGRYYETGS--------IKPGVI-GGSKPKVATPKVV 96 (149)
T ss_dssp SCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHHHHHHSC--------CCCCCC-CCCCCSSSCHHHH
T ss_pred CCCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHHHHHcCC--------CCccCC-CCCCCCCCCHHHH
Confidence 36888887777777743 32 2456899999999999999864221110 000111 1112345677777
Q ss_pred hhhhhhccccCCCCHHHH
Q psy17007 130 TGLEKRFEAQRYLSTPER 147 (165)
Q Consensus 130 ~~Le~~F~~~~yp~~~~r 147 (165)
..+...+..++..+..+.
T Consensus 97 ~~I~~~~~~~~~~s~~~i 114 (149)
T 1k78_A 97 EKIAEYKRQNPTMFAWEI 114 (149)
T ss_dssp HHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHHHhCcchhHHHH
Confidence 777777766665555543
No 166
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=70.38 E-value=3.2 Score=21.89 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 51 VFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
.++.++...+...+... . ...+||..+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHc
Confidence 34555655555555433 2 35678999999999999999754
No 167
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.31 E-value=2.9 Score=24.97 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=34.1
Q ss_pred cccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhh
Q psy17007 125 SDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163 (165)
Q Consensus 125 t~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~ 163 (165)
++.-.+.|++.|...+.+..++-..|+.+.+|+..||+-
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkd 52 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLD 52 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHH
Confidence 334467899999999999999999999999999999973
No 168
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=64.30 E-value=13 Score=18.99 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 51 VFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
.++.++...+...+... . ...++|..+|++...|..|...-
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhhH
Confidence 56777776665555432 2 25678999999999999998643
No 169
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=59.22 E-value=20 Score=22.32 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHhcC--CCC-HHHHHHHHHHhccchhhhhhhhcc
Q psy17007 49 RTVFSDHQLTGLEKRFEAQR--YLS-TPERVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 49 R~~~s~~q~~~Le~~f~~~~--~p~-~~~~~~la~~l~l~~~~V~~WF~n 95 (165)
+..|+.++.......+.... +.+ ......+|..+|++...|..|...
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 34689988766555553321 222 235677999999999999999864
No 170
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=53.50 E-value=4.7 Score=24.38 Aligned_cols=45 Identities=20% Similarity=0.128 Sum_probs=35.2
Q ss_pred ccccccccchhhhhhhcc-----ccCCCCHHHHHHHHHHcCCChhhhhhc
Q psy17007 120 ARTVFSDHQLTGLEKRFE-----AQRYLSTPERVELATALQLSETQLFYV 164 (165)
Q Consensus 120 ~rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~lgl~~~qVq~~ 164 (165)
....++.++...|...|. .+-+++..+...+...+|++..+|+.+
T Consensus 17 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~ 66 (91)
T 2pmy_A 17 QGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAV 66 (91)
T ss_dssp --CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHH
Confidence 345688888999999885 366889999998889999988877654
No 171
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=53.12 E-value=15 Score=23.07 Aligned_cols=42 Identities=17% Similarity=0.073 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 49 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 49 R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
...++..+.++|.-.+. .+ .-.+||..+|++...|+.+..+-
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~----s~~EIA~~L~iS~~TV~~~l~ri 73 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF----LVTEIAKKLNRSIKTISSQKKSA 73 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC----CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 45689999999977543 22 24778999999999999988753
No 172
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=51.93 E-value=9.8 Score=25.56 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=37.7
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHHHH-HHHh--ccchhhhhhhhccC
Q psy17007 46 RKARTVFSDHQLTGLEKRF-EAQRYLSTPERVEL-ATAL--QLSETQVKTWFQNR 96 (165)
Q Consensus 46 rr~R~~~s~~q~~~Le~~f-~~~~~p~~~~~~~l-a~~l--~l~~~~V~~WF~nr 96 (165)
++.|.++|.+|...+..++ ..++-.+..+.... ...+ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678899999999999999 67776655443332 2267 77888899998774
No 173
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=51.53 E-value=12 Score=26.00 Aligned_cols=39 Identities=5% Similarity=0.090 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|.+..|-... ...||...|++..-+..+|.++
T Consensus 34 l~aa~~lf~~~G~~~~t-v~~IA~~agvs~~t~Y~~F~sK 72 (215)
T 2qko_A 34 VNAAIEVLAREGARGLT-FRAVDVEANVPKGTASNYFPSR 72 (215)
T ss_dssp HHHHHHHHHHTCTTTCC-HHHHHHHSSSTTTCHHHHCSCH
T ss_pred HHHHHHHHHHhChhhcc-HHHHHHHcCCCcchHHHhCCCH
Confidence 34455568888875443 6778999999999999999987
No 174
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=50.74 E-value=20 Score=21.60 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhccchhhhhhhhc
Q psy17007 51 VFSDHQLTGLEKRFEA-----QRYLSTPERVELATALQLSETQVKTWFQ 94 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~-----~~~p~~~~~~~la~~l~l~~~~V~~WF~ 94 (165)
.++.++...+.+.|.. +.+.+..+...+...+|++...+...|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4688899999999864 4567888888877888998888876664
No 175
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=50.66 E-value=18 Score=21.55 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=17.5
Q ss_pred HHHHHHHhccchhhhhhhhc
Q psy17007 75 RVELATALQLSETQVKTWFQ 94 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~ 94 (165)
..++|..+|++...++.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999965
No 176
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=50.23 E-value=7.8 Score=23.77 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=31.8
Q ss_pred ccccchhhhhhhcc-----ccCCCCHHHHHHHHHHcCCChhhhhhc
Q psy17007 124 FSDHQLTGLEKRFE-----AQRYLSTPERVELATALQLSETQLFYV 164 (165)
Q Consensus 124 ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~lgl~~~qVq~~ 164 (165)
++.++...+.++|. .+-+++..+-..+...+|++..+|+-+
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i 49 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHI 49 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHH
Confidence 56778888888884 356788888888888889988877654
No 177
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=48.50 E-value=84 Score=23.58 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=43.7
Q ss_pred cCCCCHHHHHHHHHHhc---cchhhhhhhhccCCCCccccCCCCCccCccccccccccccccccchhhhhhhccccCCCC
Q psy17007 67 QRYLSTPERVELATALQ---LSETQVKTWFQNRLPFGSLFSTSPHELGSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLS 143 (165)
Q Consensus 67 ~~~p~~~~~~~la~~l~---l~~~~V~~WF~nrr~~~~~~~~~~~~~~~~~~~~rr~rt~ft~~Q~~~Le~~F~~~~yp~ 143 (165)
......+-...|+..+| ++...|..|++.-+. . . ......++.. .....++++ |....+.++..+
T Consensus 21 ~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~-g-~-----~~l~~~~r~g--rp~~~~~~~---i~~~v~~~~~~t 88 (345)
T 3hot_A 21 LKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS-G-D-----FDVDDKEHGK--PPKRYEDAE---LQALLDEDDAQT 88 (345)
T ss_dssp TTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT-C-C-----CCCSCCCCCC--CCCSSCHHH---HHHHHHHCSCCC
T ss_pred cCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC-C-C-----ccccCCCCCC--CCCcccHHH---HHHHHHhCccch
Confidence 34444444555677777 999999999975332 1 0 0001111111 111234444 333445555554
Q ss_pred HHHHHHHHHHcCCChhhhhhc
Q psy17007 144 TPERVELATALQLSETQLFYV 164 (165)
Q Consensus 144 ~~~r~~La~~lgl~~~qVq~~ 164 (165)
. .+|+..++++...|.-+
T Consensus 89 ~---~~ia~~l~vs~~tV~r~ 106 (345)
T 3hot_A 89 Q---KQLAEQLEVSQQAVSNR 106 (345)
T ss_dssp H---HHHHHHTTSCHHHHHHH
T ss_pred H---HHHHHHHCCCHHHHHHH
Confidence 3 35677778888777654
No 178
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=47.87 E-value=5.3 Score=28.73 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|.+..|-.. ....||...|++..-|..+|.|+
T Consensus 52 l~aA~~lf~~~G~~~~-t~~~IA~~aGvs~~t~Y~~F~sK 90 (245)
T 3aqt_A 52 ITSARTLMAERGVDNV-GIAEITEGANIGTGTFYNYFPDR 90 (245)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHTTSCGGGGGGTCSSH
T ss_pred HHHHHHHHHhcCcccC-cHHHHHHHhCCChHHHHHHcCCH
Confidence 3344556778777443 36678999999999999999987
No 179
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=46.21 E-value=12 Score=26.55 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+..-.+.|.+..|-... ...||...|++..-|...|.|+
T Consensus 50 l~aA~~lf~e~G~~~~t-~~~IA~~aGvs~~tlY~~F~sK 88 (236)
T 3q0w_A 50 LATAENLLEDRPLADIS-VDDLAKGAGISRPTFYFYFPSK 88 (236)
T ss_dssp HHHHHHHHHHSCGGGCC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCcHHHHHHHCCCH
Confidence 33444557787774333 6678999999999999999987
No 180
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=46.03 E-value=14 Score=20.26 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.0
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999999753
No 181
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=44.23 E-value=16 Score=20.20 Aligned_cols=22 Identities=14% Similarity=0.415 Sum_probs=19.0
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSE 42 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 5678999999999999999753
No 182
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=43.51 E-value=21 Score=24.40 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 58 TGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 58 ~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
....+.|.+..|-... ...||...|++..-+..+|.++
T Consensus 38 ~aa~~l~~~~G~~~~t-v~~Ia~~agvs~~t~Y~~F~sK 75 (218)
T 3dcf_A 38 KVATELFREKGYYATS-LDDIADRIGFTKPAIYYYFKSK 75 (218)
T ss_dssp HHHHHHHHHTCTTTCC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHcCcccCc-HHHHHHHhCCCHHHHHHHcCCH
Confidence 4455568888875443 6678999999999999999987
No 183
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=43.25 E-value=16 Score=20.40 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=19.6
Q ss_pred HHHHHHHhccchhhhhhhhccCC
Q psy17007 75 RVELATALQLSETQVKTWFQNRL 97 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nrr 97 (165)
...||..+|++...|..|..+++
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56789999999999999997643
No 184
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=42.75 E-value=26 Score=24.40 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 58 TGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 58 ~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
..-.+.|.+..|-... ...||...|++..-|..+|.|+
T Consensus 42 ~aA~~lf~~~G~~~~t-~~~IA~~AGvs~~tlY~~F~sK 79 (221)
T 3g7r_A 42 GTATRIFYAEGIHSVG-IDRITAEAQVTRATLYRHFSGK 79 (221)
T ss_dssp HHHHHHHHHHCSTTSC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHCCCH
Confidence 3444468888875444 6678999999999999999987
No 185
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=41.91 E-value=66 Score=20.53 Aligned_cols=106 Identities=13% Similarity=0.230 Sum_probs=60.2
Q ss_pred CCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhc--cchhhhhhhhccCCCCccccCCCCCccCc-ccccccc
Q psy17007 48 ARTVFSDHQLTGLEKRFEA-----QRYLSTPERVELATALQ--LSETQVKTWFQNRLPFGSLFSTSPHELGS-KHCRRRK 119 (165)
Q Consensus 48 ~R~~~s~~q~~~Le~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~nrr~~~~~~~~~~~~~~~-~~~~~rr 119 (165)
..+.++..++..|...|.. +.+.+..+-..+...+| ++...|...|..- .. ...... ...-...
T Consensus 6 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~--~g------~i~~~eF~~~~~~~ 77 (153)
T 2ovk_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC--PG------QLNFTAFLTLFGEK 77 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS--SS------CCCSHHHHHTTTTT
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc--CC------CCCHHHHHHHHHHH
Confidence 3568999999999999974 45678777777666666 4556676666542 00 000000 0000000
Q ss_pred ccccccccchhhhhhhcc-----ccCCCCHHHHHHHHHHcC--CChhhhhhc
Q psy17007 120 ARTVFSDHQLTGLEKRFE-----AQRYLSTPERVELATALQ--LSETQLFYV 164 (165)
Q Consensus 120 ~rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~lg--l~~~qVq~~ 164 (165)
... ......|..+|. .+-+++..+...+...+| ++...|..+
T Consensus 78 ~~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~ 126 (153)
T 2ovk_B 78 VSG---TDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNV 126 (153)
T ss_dssp TTT---CCCTTHHHHHHHTTCSSCSSCCCHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred hcc---CChHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHH
Confidence 000 111234455553 466799999988888887 666666544
No 186
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=40.97 E-value=60 Score=21.39 Aligned_cols=106 Identities=12% Similarity=0.193 Sum_probs=63.1
Q ss_pred CCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhccc--hhhhhhhhccCCCCccccCCCCCccCcc-cccccc
Q psy17007 48 ARTVFSDHQLTGLEKRFEA-----QRYLSTPERVELATALQLS--ETQVKTWFQNRLPFGSLFSTSPHELGSK-HCRRRK 119 (165)
Q Consensus 48 ~R~~~s~~q~~~Le~~f~~-----~~~p~~~~~~~la~~l~l~--~~~V~~WF~nrr~~~~~~~~~~~~~~~~-~~~~rr 119 (165)
.|..+|.+|+..|.+.|.. +.+.+..+...+...+|.. ...+...+.+--.. .....- ..-...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~~~~--------i~f~ef~~~~~~~ 77 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQ--------LNFTAFLTLFGEK 77 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHHHTSSSC--------CCSHHHHHTTTTT
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHHHhccCC--------ccHHHHHHHHHhh
Confidence 4567999999999999964 5578888888888888764 44555555431100 000000 000000
Q ss_pred ccccccccchhhhhhhcc-----ccCCCCHHHHHHHHHHcC--CChhhhhhc
Q psy17007 120 ARTVFSDHQLTGLEKRFE-----AQRYLSTPERVELATALQ--LSETQLFYV 164 (165)
Q Consensus 120 ~rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~lg--l~~~qVq~~ 164 (165)
.... .....|..+|. .+-|++..+-..+...+| |+..+|+.+
T Consensus 78 ~~~~---~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~ 126 (153)
T 3i5g_B 78 VSGT---DPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNV 126 (153)
T ss_dssp TTTC---CCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHH
T ss_pred hccc---ccHHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHH
Confidence 0000 11234566653 467899999998888887 677777654
No 187
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=40.95 E-value=54 Score=19.28 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhcc
Q psy17007 49 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 49 R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~n 95 (165)
...+|.++...|+.....-+--+...-+.||..+|=+..+|+.-|+.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~ 54 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQ 54 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 34799999999999987665333334456888889888888865543
No 188
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=40.49 E-value=17 Score=22.31 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCc
Q psy17007 50 TVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFG 100 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~ 100 (165)
..++..+.++|.-.+ ..+ ...++|..+|++...|+.+..+-+.+.
T Consensus 26 ~~Lt~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 26 SGLTDQERTLLGLLS--EGL----TNKQIADRMFLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp -CCCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 468899999998753 223 246789999999999999887655444
No 189
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=40.40 E-value=41 Score=20.48 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=31.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 47 KARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 47 r~R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
.....+|..+.++|.-.. ..+ ...+||..+|++...|+....+-
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~--~G~----s~~eIA~~L~iS~~TV~~~~~~i 68 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE--KGF----TNQEIADALHLSKRSIEYSLTSI 68 (90)
T ss_dssp ----CCCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 344578999999998765 333 36678999999999999877653
No 190
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=40.36 E-value=16 Score=19.59 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=27.1
Q ss_pred CCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhc
Q psy17007 51 VFS--DHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQ 94 (165)
Q Consensus 51 ~~s--~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~ 94 (165)
.++ .++...+...+. ... ...++|..+|++...|..|..
T Consensus 13 ~l~~~~~~~~~i~~l~~-~g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAK-MGY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHH-TTC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 355 566666655553 333 355789999999999999975
No 191
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=40.36 E-value=19 Score=20.44 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=19.1
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~ 47 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNK 47 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5678999999999999999754
No 192
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=39.97 E-value=48 Score=22.15 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=17.9
Q ss_pred HHHHHHHhccchhhhhhhhcc
Q psy17007 75 RVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~n 95 (165)
+.++|..+|++.+.++.|=..
T Consensus 5 I~e~A~~~gvs~~tLR~Ye~~ 25 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYERI 25 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 467899999999999999653
No 193
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=39.91 E-value=23 Score=22.07 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=25.5
Q ss_pred cccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhhc
Q psy17007 121 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFYV 164 (165)
Q Consensus 121 rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~~ 164 (165)
.-+|+.+|+..| ...+..+|....+|++.|+..|
T Consensus 32 ~LPFsvdqIvnL----------pv~eFn~lL~~~~Lt~~Ql~lI 65 (90)
T 2lz1_A 32 HIPFPVEKIINL----------PVVDFNEMMSKEQFNEAQLALI 65 (90)
T ss_dssp TCSSCHHHHHHS----------CHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCCCHHHHHHC----------CHHHHHHHHHHcCCCHHHHHHH
Confidence 446777776665 5578888999999999997654
No 194
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=39.89 E-value=36 Score=19.43 Aligned_cols=45 Identities=9% Similarity=0.041 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 51 VFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
.+++.+..+|.-.|..... ....-.++|..+|++...|+.+...-
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4788899999888741100 01124678999999999999887643
No 195
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=39.81 E-value=48 Score=20.80 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=17.3
Q ss_pred HHHHHHHhccchhhhhhhhc
Q psy17007 75 RVELATALQLSETQVKTWFQ 94 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~ 94 (165)
..++|..+|++.+.++.|-.
T Consensus 5 i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45689999999999999964
No 196
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=39.71 E-value=36 Score=18.93 Aligned_cols=42 Identities=7% Similarity=-0.054 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCC
Q psy17007 51 VFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRL 97 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr 97 (165)
.+++.+..+|.-.|... + ...++|..+|++...|+.+...-+
T Consensus 15 ~L~~~~r~il~l~~~~g-~----s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-L----SYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-C----CHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788888888766333 2 356789999999999998886543
No 197
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=39.57 E-value=13 Score=26.23 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=33.2
Q ss_pred CCCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 47 KARTVFSDHQ-LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 47 r~R~~~s~~q-~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+.|...+.++ +....+.|....|-.. ....||...|++..-+...|.|+
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~~F~~K 69 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEVGLDGV-STRRLAKRLGVEQPSLYWYFRTK 69 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHHCGGGC-CHHHHHHHHTSCTHHHHTTCSSH
T ss_pred ccccccCHHHHHHHHHHHHHhcCcccC-CHHHHHHHhCCChhHHHHHcCCH
Confidence 3444555544 3455566877776433 36678999999999999999987
No 198
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=39.20 E-value=20 Score=20.25 Aligned_cols=22 Identities=14% Similarity=0.415 Sum_probs=19.0
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSE 42 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5678999999999999999753
No 199
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=39.15 E-value=15 Score=21.40 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=19.9
Q ss_pred HHHHHHHhccchhhhhhhhccCC
Q psy17007 75 RVELATALQLSETQVKTWFQNRL 97 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nrr 97 (165)
...||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 56799999999999999997643
No 200
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=38.93 E-value=22 Score=20.17 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.3
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5678999999999999999764
No 201
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=38.83 E-value=46 Score=21.92 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=17.8
Q ss_pred HHHHHHHhccchhhhhhhhcc
Q psy17007 75 RVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~n 95 (165)
..++|..+|++.+.++.|-..
T Consensus 3 I~e~A~~~gvs~~tLR~ye~~ 23 (135)
T 1q06_A 3 ISDVAKITGLTSKAIRFYEEK 23 (135)
T ss_dssp HHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 457899999999999999653
No 202
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=38.78 E-value=67 Score=19.68 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhcc--chhhhhhhhc
Q psy17007 48 ARTVFSDHQLTGLEKRFEA-----QRYLSTPERVELATALQL--SETQVKTWFQ 94 (165)
Q Consensus 48 ~R~~~s~~q~~~Le~~f~~-----~~~p~~~~~~~la~~l~l--~~~~V~~WF~ 94 (165)
....++.+++..|.+.|.. +.+.+..+...+...+|. +..+|..+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456899999999999864 567888888888888774 5667777775
No 203
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=38.78 E-value=23 Score=19.58 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=19.1
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~ 38 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGK 38 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5678999999999999998764
No 204
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=38.63 E-value=18 Score=24.55 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 56 QLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 56 q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
=+..-.+.|.+..| . .....||...|++..-|..+|.|+
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK 58 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTR 58 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCH
Confidence 34455567888888 5 678899999999999999999986
No 205
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=38.39 E-value=26 Score=24.58 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 56 QLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 56 q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
=+....+.|.+..|-... ...||...|++..-|...|.++
T Consensus 35 Il~aA~~lf~~~G~~~~t-~~~IA~~Agvs~~t~Y~~F~sK 74 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGTS-MEHLSKAAGISKSSIYHHVTGK 74 (230)
T ss_dssp HHHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHTTTCSSH
T ss_pred HHHHHHHHHHHcCccccC-HHHHHHHHCCChhHHHHhCCCH
Confidence 356667778888885444 6678999999999999999987
No 206
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=37.90 E-value=22 Score=20.71 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=19.2
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~ 49 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGI 49 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTS
T ss_pred HHHHHHHhCcCHHHHHHHHcCC
Confidence 4678999999999999999764
No 207
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=37.45 E-value=22 Score=20.19 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=18.9
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGD 47 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCC
Confidence 5678999999999999999753
No 208
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=37.39 E-value=49 Score=20.77 Aligned_cols=20 Identities=5% Similarity=-0.017 Sum_probs=17.3
Q ss_pred HHHHHHHhccchhhhhhhhc
Q psy17007 75 RVELATALQLSETQVKTWFQ 94 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~ 94 (165)
..++|..+|++.+.++.|-.
T Consensus 4 i~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999965
No 209
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=36.93 E-value=33 Score=19.33 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 49 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 49 R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
-..+++.+.++|.-.+ ..+ ...++|..+|++...|..+...-
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~ 50 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNA 50 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHH
Confidence 3468899999998742 223 35678999999999999888653
No 210
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=36.85 E-value=27 Score=21.74 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=23.8
Q ss_pred ccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhhc
Q psy17007 122 TVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFYV 164 (165)
Q Consensus 122 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~~ 164 (165)
-+||.+|+..| ...+..+|....+|++.|+..|
T Consensus 33 lPfs~~~Iv~l----------pv~efn~ll~~~~Ls~~Ql~lI 65 (91)
T 2kz5_A 33 IPFPTDKIVNL----------PVDDFNELLARYPLTESQLALV 65 (91)
T ss_dssp CSSCHHHHHHS----------CHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCCHHHHHHC----------cHHHHHHHHHHcCCCHHHHHHH
Confidence 34666665554 5677888899999999987654
No 211
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=36.53 E-value=56 Score=22.14 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=18.5
Q ss_pred HHHHHHHHhccchhhhhhhhcc
Q psy17007 74 ERVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 74 ~~~~la~~l~l~~~~V~~WF~n 95 (165)
...++|..+|++.+.++.|-..
T Consensus 13 ~i~e~A~~~gvs~~TLR~ye~~ 34 (154)
T 2zhg_A 13 TPGEVAKRSGVAVSALHFYESK 34 (154)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHc
Confidence 3567899999999999999654
No 212
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=35.44 E-value=25 Score=23.97 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 58 TGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 58 ~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
..-.+.|.++.| . .....||...|++..-|..+|.|+
T Consensus 20 ~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK 56 (196)
T 2qwt_A 20 EVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTK 56 (196)
T ss_dssp HHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred HHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCH
Confidence 344556888888 6 568889999999999999999986
No 213
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=35.42 E-value=77 Score=19.38 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=17.6
Q ss_pred HHHHHHHhccchhhhhhhhcc
Q psy17007 75 RVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~n 95 (165)
...||..+|++...|..|-.+
T Consensus 44 q~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHCC
Confidence 567899999999998888765
No 214
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=34.86 E-value=26 Score=19.63 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=18.9
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 5678999999999999998753
No 215
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.76 E-value=28 Score=20.67 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCC
Q psy17007 50 TVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPF 99 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~ 99 (165)
..++..+.++|.-.+ ..+ .-.++|..+|++...|+.+..+-+.+
T Consensus 20 ~~Lt~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 20 NQLTPRERDILKLIA--QGL----PNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp GGSCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 468899999988743 222 36678999999999999888654333
No 216
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=34.16 E-value=27 Score=19.88 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.1
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~ 44 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGR 44 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999999764
No 217
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=34.06 E-value=26 Score=21.12 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=19.6
Q ss_pred HHHHHHHhccchhhhhhhhccCC
Q psy17007 75 RVELATALQLSETQVKTWFQNRL 97 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nrr 97 (165)
...||..+|++...|..|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 56789999999999999997643
No 218
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=33.85 E-value=20 Score=21.14 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.1
Q ss_pred HHHHHHHhccchhhhhhhhcc
Q psy17007 75 RVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~n 95 (165)
...||..||++..-|..|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999999865
No 219
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.66 E-value=53 Score=22.01 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=18.3
Q ss_pred HHHHHHHhccchhhhhhhhcc
Q psy17007 75 RVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~n 95 (165)
+.++|..+|++.+.++.|=..
T Consensus 19 I~evA~~~gvs~~tLR~Ye~~ 39 (148)
T 3gpv_A 19 IGQVAKMQHLTISQIRYYDKQ 39 (148)
T ss_dssp HHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 677899999999999999753
No 220
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=33.61 E-value=43 Score=18.79 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCc
Q psy17007 51 VFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFG 100 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~ 100 (165)
.+++.+..+|.-.|....+-+ ..-.++|..+|++...|+.+...-+.+-
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKL 53 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 467888888888773211111 1256789999999999998876544333
No 221
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=32.85 E-value=52 Score=19.73 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCC
Q psy17007 51 VFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRL 97 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr 97 (165)
.++..+..+|.-.|.... .-.+||..+|++...|+.+...-+
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 355666666665442221 356789999999999998876433
No 222
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=32.43 E-value=41 Score=19.37 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=29.8
Q ss_pred ccccccchhhhhhhcc-----ccCCCCHHHHHHHHHHcCC--Chhh
Q psy17007 122 TVFSDHQLTGLEKRFE-----AQRYLSTPERVELATALQL--SETQ 160 (165)
Q Consensus 122 t~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~lgl--~~~q 160 (165)
..++.++...|...|. .+-+++..+...+...+|. +..+
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~ 51 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRE 51 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHH
Confidence 4578888889999885 3568899998888888874 4555
No 223
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=32.29 E-value=30 Score=19.81 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=18.8
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|-.++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~ 39 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSE 39 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 4678999999999999998753
No 224
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=31.95 E-value=84 Score=20.49 Aligned_cols=46 Identities=7% Similarity=0.176 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhccchhhhh-hhh
Q psy17007 48 ARTVFSDHQLTGLEKRFEAQ----RYLSTPERVELATALQLSETQVK-TWF 93 (165)
Q Consensus 48 ~R~~~s~~q~~~Le~~f~~~----~~p~~~~~~~la~~l~l~~~~V~-~WF 93 (165)
....++.++...+++.|..- .+.+..+-..+-...||+...+. +|-
T Consensus 23 ~~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw~ 73 (121)
T 3fia_A 23 DTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWA 73 (121)
T ss_dssp TTSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35678999999999999753 35667777777777888877765 664
No 225
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=31.46 E-value=29 Score=20.38 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=19.3
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 34 q~elA~~~gis~~~is~~e~g~ 55 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGK 55 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5678999999999999999764
No 226
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.28 E-value=25 Score=19.61 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=17.4
Q ss_pred HHHHHHHhccchhhhhhhh
Q psy17007 75 RVELATALQLSETQVKTWF 93 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF 93 (165)
...||..+|++..-|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999998
No 227
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=30.93 E-value=24 Score=28.61 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=36.6
Q ss_pred cccccccccchhhhhhhcc-----ccCCCCHHHHHHHHHHcCC--Chhhhhhc
Q psy17007 119 KARTVFSDHQLTGLEKRFE-----AQRYLSTPERVELATALQL--SETQLFYV 164 (165)
Q Consensus 119 r~rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~lgl--~~~qVq~~ 164 (165)
..+..++.+|+.+|.++|. .+-+++..+...+...+|+ ++.+|+-+
T Consensus 291 Ps~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~L 343 (440)
T 3u0k_A 291 PTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDM 343 (440)
T ss_dssp CBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred hhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4567899999999999995 5778999999888888874 56666544
No 228
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=30.64 E-value=33 Score=19.84 Aligned_cols=22 Identities=23% Similarity=0.133 Sum_probs=19.0
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
..+||..+|++...|..|-.++
T Consensus 30 q~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4678999999999999999764
No 229
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=30.62 E-value=39 Score=22.93 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|.+..|-... ...||...|++..-+..+|.++
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~Ia~~agvs~~t~Y~yF~sK 58 (203)
T 3ccy_A 20 IERAAAMFARQGYSETS-IGDIARACECSKSRLYHYFDSK 58 (203)
T ss_dssp HHHHHHHHHHTCTTTSC-HHHHHHHTTCCGGGGTTTCSCH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCCcCeeeeeeCCH
Confidence 44555678888886544 6778999999999999999987
No 230
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=30.51 E-value=31 Score=19.62 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=18.5
Q ss_pred HHHHHHHhccchhhhhhhhcc
Q psy17007 75 RVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~n 95 (165)
..++|..||++...|..|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 457899999999999999875
No 231
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=30.37 E-value=34 Score=19.74 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.1
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFE 47 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 5679999999999999999764
No 232
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=30.29 E-value=35 Score=19.54 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCC
Q psy17007 50 TVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRL 97 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr 97 (165)
..++.+.+..+..... . ...+||..+|++...|..|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~g----l---tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLS----L---TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTT----C---CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcC----C---CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 3578888877765432 2 256789999999999999997653
No 233
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=30.20 E-value=78 Score=21.15 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=18.2
Q ss_pred HHHHHHHhccchhhhhhhhcc
Q psy17007 75 RVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~n 95 (165)
..++|..+|++.+.++.|=..
T Consensus 7 I~evA~~~Gvs~~tLR~ye~~ 27 (146)
T 3hh0_A 7 ISEFASVGDVTVRALRYYDKI 27 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 567899999999999999764
No 234
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=30.06 E-value=41 Score=22.85 Aligned_cols=110 Identities=17% Similarity=0.227 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhcc--chhhhhhhhccCCCCccccCCCCCccCcccccccccc
Q psy17007 49 RTVFSDHQLTGLEKRFEA-----QRYLSTPERVELATALQL--SETQVKTWFQNRLPFGSLFSTSPHELGSKHCRRRKAR 121 (165)
Q Consensus 49 R~~~s~~q~~~Le~~f~~-----~~~p~~~~~~~la~~l~l--~~~~V~~WF~nrr~~~~~~~~~~~~~~~~~~~~rr~r 121 (165)
++.+|.+|++.|.+.|.. +.+.+..+-..+...+|+ +...|...|..--..... .-.-...- ..-.....
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~d~d~~~-~i~~~ef~--~~~~~~~~ 78 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNH-QIEFSEFL--ALMSRQLK 78 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTTCSSCSS-SBCTTHHH--HHHTSSCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHHHHhCcCCCc-cchHHHHH--HHHHHhcc
Confidence 567999999999999964 457888888888778775 445566555421110000 00000000 00000001
Q ss_pred ccccccchhhhhhhcc-----ccCCCCHHHHHHHHHHcC--CChhhhhhc
Q psy17007 122 TVFSDHQLTGLEKRFE-----AQRYLSTPERVELATALQ--LSETQLFYV 164 (165)
Q Consensus 122 t~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~lg--l~~~qVq~~ 164 (165)
.......|..+|. .+-|++..+-..+...+| ++..+|.-+
T Consensus 79 ---~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l 125 (176)
T 2lhi_A 79 ---SNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDM 125 (176)
T ss_dssp ---SSHHHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred ---cCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHH
Confidence 1111234555553 466888888888777776 556666543
No 235
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=29.43 E-value=27 Score=23.21 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=20.4
Q ss_pred HHHHHHHhccchhhhhhhhccCCC
Q psy17007 75 RVELATALQLSETQVKTWFQNRLP 98 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nrr~ 98 (165)
...+|..+|++..+++.|....|.
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCCB
T ss_pred HHHHHHHhCCCcccEEEEEeecCC
Confidence 567899999999999999986664
No 236
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=29.21 E-value=38 Score=24.35 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=32.9
Q ss_pred CCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 49 RTVFSDHQ-LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 49 R~~~s~~q-~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+...+.++ +..-.+.|....|-... ...||..+|++..-+..+|.|+
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~tlY~hF~~K 73 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAETFS-VRKLAASLGTDSSSLYRHFRNK 73 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCCCCC-HHHHHHHTTSCHHHHHHHTSSH
T ss_pred chhhHHHHHHHHHHHHHHhcCcccCC-HHHHHHHhCcCHHHHHHHcCCH
Confidence 34455554 34455567777765444 6678999999999999999987
No 237
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=28.70 E-value=18 Score=24.01 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCChhhhhhcC
Q psy17007 146 ERVELATALQLSETQLFYVI 165 (165)
Q Consensus 146 ~r~~La~~lgl~~~qVq~~~ 165 (165)
...+||.+.||++++|.-|+
T Consensus 94 n~~eLArkYgLSer~I~~Ii 113 (129)
T 1rr7_A 94 NVSELTTRYGVTFNTVYKAI 113 (129)
T ss_dssp CHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHH
Confidence 56799999999999998663
No 238
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=28.35 E-value=35 Score=23.03 Aligned_cols=38 Identities=11% Similarity=0.273 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 58 TGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 58 ~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
....+.|.+..|-... ...||...|++..-|..+|.|+
T Consensus 19 ~aA~~lf~e~G~~~~t-~~~IA~~agvsk~tlY~~F~sK 56 (192)
T 2fq4_A 19 SASYELLLESGFKAVT-VDKIAERAKVSKATIYKWWPNK 56 (192)
T ss_dssp HHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHcCccccc-HHHHHHHcCCCHHHHHHHCCCH
Confidence 3444558888885444 6778999999999999999987
No 239
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.34 E-value=69 Score=18.99 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCC
Q psy17007 51 VFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLP 98 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~ 98 (165)
.+++.+..+|.-.|-...- ....-.++|..+|++...|+.+...-+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678888888887741100 0113567899999999999998865433
No 240
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=28.28 E-value=15 Score=23.38 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=32.1
Q ss_pred ccccccchhhhhhhccc-----cCCCCHHHHHHHHHHcCCChhhhhhc
Q psy17007 122 TVFSDHQLTGLEKRFEA-----QRYLSTPERVELATALQLSETQLFYV 164 (165)
Q Consensus 122 t~ft~~Q~~~Le~~F~~-----~~yp~~~~r~~La~~lgl~~~qVq~~ 164 (165)
..++.++...+.++|.. +-+++..+-..+...+|++..+|+-|
T Consensus 14 ~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i 61 (110)
T 1iq3_A 14 WRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYI 61 (110)
T ss_dssp CCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHH
Confidence 35778888889888853 56688888777777788888776654
No 241
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=27.87 E-value=47 Score=20.68 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=23.6
Q ss_pred cccccccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhhc
Q psy17007 121 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFYV 164 (165)
Q Consensus 121 rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~~ 164 (165)
.-+||.+|+..| ...+..+|....+|++.|+..|
T Consensus 28 ~lPfs~~eIv~l----------pv~efn~lLk~~~Ls~~Ql~~i 61 (92)
T 1skn_P 28 ELPVSAFQISEM----------SLSELQQVLKNESLSEYQRQLI 61 (92)
T ss_dssp TCSSCHHHHHHS----------CHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCCCHHHHHHC----------cHHHHHHHHHhCCCCHHHHHHH
Confidence 335666665555 4567778888899999887643
No 242
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=27.64 E-value=33 Score=23.13 Aligned_cols=40 Identities=10% Similarity=0.272 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 56 QLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 56 q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
=++...+.|.+..|-.. ....||...|++..-+...|.++
T Consensus 18 Il~aa~~lf~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK 57 (195)
T 2iu5_A 18 IAKAFKDLMQSNAYHQI-SVSDIMQTAKIRRQTFYNYFQNQ 57 (195)
T ss_dssp HHHHHHHHHHHSCGGGC-CHHHHHHHHTSCGGGGGGTCSSH
T ss_pred HHHHHHHHHHhCCCCee-CHHHHHHHhCCCHHHHHHHcCCH
Confidence 34455667888877443 36678999999999999999987
No 243
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=27.45 E-value=31 Score=19.82 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCC
Q psy17007 52 FSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLP 98 (165)
Q Consensus 52 ~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~ 98 (165)
+++.+..+|.-.+ ..+ ...++|..+|++...|+.+..+-+.
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5677777776632 222 3457899999999999988865433
No 244
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=27.40 E-value=40 Score=19.92 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.0
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5678999999999999999753
No 245
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=27.33 E-value=33 Score=24.41 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
++...+.|.+..|-.. ....||...|++..-+..+|.++
T Consensus 49 l~AA~~lf~~~G~~~~-t~~~IA~~aGvs~~tlY~~F~sK 87 (255)
T 3g1o_A 49 LATAENLLEDRPLADI-SVDDLAKGAGISRPTFYFYFPSK 87 (255)
T ss_dssp HHHHHHHHTTSCGGGC-CHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCCccC-cHHHHHHHhCCCHHHHHHHcCCH
Confidence 3444555777776433 36678999999999999999987
No 246
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=27.23 E-value=43 Score=22.15 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 56 QLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 56 q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
=+......|.+..|-... ...||...|++..-+...|.|+
T Consensus 14 Il~aa~~l~~~~G~~~~t-v~~Ia~~agvs~~t~Y~~F~sK 53 (195)
T 3ppb_A 14 ILETALQLFVSQGFHGTS-TATIAREAGVATGTLFHHFPSK 53 (195)
T ss_dssp HHHHHHHHHHHTCSTTSC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHhcCcccCC-HHHHHHHhCCChhHHHHHcCCH
Confidence 344555668888875544 6778999999999999999987
No 247
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=26.99 E-value=37 Score=20.28 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=19.3
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGK 45 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTS
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 5678999999999999999764
No 248
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=26.84 E-value=24 Score=23.91 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+..-.+.|.+..| . .....||...|++..-+...|.|+
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK 59 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSR 59 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCH
Confidence 3344556888888 6 568889999999999999999987
No 249
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=26.80 E-value=44 Score=19.25 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=19.0
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|-.++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 5678999999999999998764
No 250
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=26.44 E-value=46 Score=19.26 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.6
Q ss_pred HHHHHHHhccchhhhhhhhcc
Q psy17007 75 RVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~n 95 (165)
...||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467899999999999999976
No 251
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=26.42 E-value=42 Score=20.35 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.2
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
..+||..+|++...|..|..++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5678999999999999999763
No 252
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=26.40 E-value=40 Score=22.56 Aligned_cols=40 Identities=30% Similarity=0.364 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRL 97 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr 97 (165)
+....+.|.+..|-... ...||...|++..-+..+|.++.
T Consensus 9 l~aA~~lf~~~G~~~~s-~~~IA~~agvsk~t~Y~~F~sK~ 48 (190)
T 3vpr_A 9 LEEAAKLFTEKGYEATS-VQDLAQALGLSKAALYHHFGSKE 48 (190)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHHSSHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHcCCHH
Confidence 44555678888885443 66789999999999999999874
No 253
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=26.35 E-value=39 Score=22.55 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|.+..|-... ...||...|++..-|...|.|+
T Consensus 13 l~aa~~l~~~~G~~~~t-~~~IA~~agvs~~t~Y~~F~sK 51 (199)
T 3qbm_A 13 VAQAAALFNVSGYAGTA-ISDIMAATGLEKGGIYRHFESK 51 (199)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHTTCSSH
T ss_pred HHHHHHHHHHhCcCcCC-HHHHHHHhCCCccHHHHhCCCH
Confidence 34445567788775444 6678999999999999999987
No 254
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=26.13 E-value=35 Score=19.91 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.0
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~ 49 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNP 49 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCG
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 5678999999999999999763
No 255
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=25.94 E-value=33 Score=24.15 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=24.1
Q ss_pred ccCCCCHHHHHHHHHHcCCChhhhhhc
Q psy17007 138 AQRYLSTPERVELATALQLSETQLFYV 164 (165)
Q Consensus 138 ~~~yp~~~~r~~La~~lgl~~~qVq~~ 164 (165)
..-|++.+....+|..+||+..+|-.|
T Consensus 37 ~~G~l~~~~~~~iA~~l~l~~~~V~~V 63 (181)
T 3i9v_2 37 EEGWIRPERIEEIARLVGTTPTEVMGV 63 (181)
T ss_dssp HHSSCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHhCcCHHHHHHH
Confidence 457999999999999999999999765
No 256
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.79 E-value=23 Score=21.05 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCChhhhhhc
Q psy17007 146 ERVELATALQLSETQLFYV 164 (165)
Q Consensus 146 ~r~~La~~lgl~~~qVq~~ 164 (165)
.-.+||..+|++...|...
T Consensus 33 t~~eLA~~Lgvs~~tV~~~ 51 (77)
T 1qgp_A 33 TAHDLSGKLGTPKKEINRV 51 (77)
T ss_dssp EHHHHHHHHCCCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 4578999999999888754
No 257
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=25.71 E-value=40 Score=22.98 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+..-.+.|.+..|-... ...||...|++..-+..+|.|+
T Consensus 17 l~aA~~lf~~~G~~~~s-~~~IA~~aGvskgtlY~~F~sK 55 (210)
T 2xdn_A 17 IEAAERAFYKRGVARTT-LADIAELAGVTRGAIYWHFNNK 55 (210)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCTTHHHHHCSSH
T ss_pred HHHHHHHHHHcCcccCc-HHHHHHHHCCChHHHHHHhCCH
Confidence 33445568888885444 6778999999999999999987
No 258
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=25.65 E-value=43 Score=21.95 Aligned_cols=39 Identities=3% Similarity=0.158 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|.+..|-... ...||...|++..-+...|.++
T Consensus 18 l~aa~~l~~~~G~~~~t-v~~Ia~~agvs~~t~Y~~F~sK 56 (177)
T 3kkc_A 18 YNAFISLLQENDYSKIT-VQDVIGLANVGRSTFYSHYESK 56 (177)
T ss_dssp HHHHHHHTTTSCTTTCC-HHHHHHHHCCCHHHHTTTCSST
T ss_pred HHHHHHHHHhCChhHhh-HHHHHHHhCCcHhhHHHHcCCH
Confidence 34455567777775444 6678999999999999999987
No 259
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=25.38 E-value=1.2e+02 Score=18.75 Aligned_cols=45 Identities=9% Similarity=0.105 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhccchhhhhhhhc
Q psy17007 50 TVFSDHQLTGLEKRFEA----QRYLSTPERVELATALQLSETQVKTWFQ 94 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~~----~~~p~~~~~~~la~~l~l~~~~V~~WF~ 94 (165)
..++.++...+.+.|.. +.+.+..+...+...+|++...+...+.
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~~ 55 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWE 55 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45788999999999864 4567788888877788988888775553
No 260
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=25.14 E-value=47 Score=19.90 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=20.5
Q ss_pred HHHHHHHhccchhhhhhhhccCCC
Q psy17007 75 RVELATALQLSETQVKTWFQNRLP 98 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nrr~ 98 (165)
...||..+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999987653
No 261
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=25.04 E-value=45 Score=22.15 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|.+..|-... ...||...|++...+...|.|+
T Consensus 8 l~aa~~l~~~~G~~~~t-i~~Ia~~agvs~~t~Y~~F~sK 46 (194)
T 3bqz_B 8 LGVAKELFIKNGYNATT-TGEIVKLSESSKGNLYYHFKTK 46 (194)
T ss_dssp HHHHHHHHHHHTTTTCC-HHHHHHHTTCCHHHHHHHTSSH
T ss_pred HHHHHHHHHHcCCccCC-HHHHHHHhCCCchhHHHhCCCH
Confidence 45556678888775444 6678999999999999999987
No 262
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=25.01 E-value=47 Score=20.15 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=23.4
Q ss_pred ccchhhhhhhccccCCCCHHHHHHHHHHcCCChhhhhhc
Q psy17007 126 DHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFYV 164 (165)
Q Consensus 126 ~~Q~~~Le~~F~~~~yp~~~~r~~La~~lgl~~~qVq~~ 164 (165)
.....+|++.+. ...=..||..+|++...|..|
T Consensus 9 ~~~r~~l~~lL~------g~dW~~LA~~Lg~~~~~I~~~ 41 (85)
T 1ngr_A 9 LTKREEVEKLLN------GDTWRHLAGELGYQPEHIDSF 41 (85)
T ss_dssp STTTHHHHHHSC------TTHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHhC------cCCHHHHHHHcCCCHHHHHHH
Confidence 344556666666 335578999999999888765
No 263
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=24.98 E-value=49 Score=22.16 Aligned_cols=39 Identities=21% Similarity=0.112 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+......|.+..|-... ...||...|++..-+..+|.++
T Consensus 10 l~aa~~l~~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK 48 (185)
T 2yve_A 10 LRTAIDYIGEYSLETLS-YDSLAEATGLSKSGLIYHFPSR 48 (185)
T ss_dssp HHHHHHHHHHSCSTTCC-HHHHHHHHCCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcChhhcc-HHHHHHHhCCChHHHHHhCcCH
Confidence 44555668888875433 6678999999999999999986
No 264
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=24.97 E-value=45 Score=22.27 Aligned_cols=41 Identities=10% Similarity=0.246 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 55 HQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 55 ~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
.=+..-.+.|.+..|-... ...||...|++..-|..+|.++
T Consensus 11 ~Il~aA~~lf~~~G~~~~t-~~~IA~~agvs~~tlY~~F~sK 51 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDGTT-LDDISKSVNIKKASLYYHYDNK 51 (192)
T ss_dssp HHHHHHHHHHHHHCTTTCC-HHHHHHHTTCCHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHcCcccCC-HHHHHHHhCCChHHHHHHCCCH
Confidence 3455556678888885444 6678999999999999999987
No 265
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=24.96 E-value=53 Score=22.23 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+..-.+.|.+..|-... ...||...|++..-+...|.|+
T Consensus 15 l~aA~~lf~~~G~~~~t-~~~Ia~~Agvs~gt~Y~yF~sK 53 (204)
T 3anp_C 15 FRAAMELFRNRGFQETT-ATEIAKAAHVSRGTFFNYYPYK 53 (204)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSST
T ss_pred HHHHHHHHHHcCccccc-HHHHHHHcCCchHHHHHHcCCH
Confidence 34445568888885444 6678999999999999999987
No 266
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=24.74 E-value=43 Score=22.28 Aligned_cols=39 Identities=8% Similarity=0.140 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|....|-... ...||...|++..-+...|.|+
T Consensus 16 l~aa~~lf~~~G~~~~t-~~~IA~~agvs~~tlY~~F~sK 54 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSGVG-LNEILQSAGVPKGSFYHYFKSK 54 (197)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHTTTCSCH
T ss_pred HHHHHHHHHHCCcccCC-HHHHHHHhCCChhhHHHHcCCH
Confidence 44555668888875444 6678999999999999999987
No 267
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=24.73 E-value=14 Score=25.90 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+..-.+.|.+..|-. .....||...|++..-|..+|.++
T Consensus 36 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sK 74 (226)
T 2pz9_A 36 VAAAKEEFARHGIAG-ARVDRIAKQARTSKERVYAYFRSK 74 (226)
T ss_dssp HHHHHHHHHHHHHHH-CCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHhCccc-CcHHHHHHHHCCChHHHHHHcCCH
Confidence 445555677776632 236678999999999999999987
No 268
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=24.62 E-value=44 Score=19.81 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=19.8
Q ss_pred HHHHHHHhccchhhhhhhhccCC
Q psy17007 75 RVELATALQLSETQVKTWFQNRL 97 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nrr 97 (165)
...||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998754
No 269
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=24.57 E-value=1.7e+02 Score=21.21 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=17.8
Q ss_pred HHHHHHHhccchhhhhhhhcc
Q psy17007 75 RVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~n 95 (165)
..++|..+|++.+.++.|-..
T Consensus 8 i~e~a~~~gvs~~tlr~y~~~ 28 (278)
T 1r8e_A 8 IGEVSKLANVSIKALRYYDKI 28 (278)
T ss_dssp HHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 567899999999999999653
No 270
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=24.26 E-value=43 Score=22.27 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 56 QLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 56 q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
=+..-.+.|....|- .....||...|++..-|...|.|+
T Consensus 14 Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK 52 (190)
T 3jsj_A 14 LLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESK 52 (190)
T ss_dssp HHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCH
T ss_pred HHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCH
Confidence 344555668888886 557888999999999999999987
No 271
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=24.11 E-value=51 Score=21.98 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 58 TGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 58 ~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
......|....|-... ...||...|++..-|...|.++
T Consensus 24 ~aa~~l~~~~G~~~~s-~~~Ia~~agvs~~t~Y~~F~sK 61 (206)
T 3kz9_A 24 EIALEVFARRGIGRGG-HADIAEIAQVSVATVFNYFPTR 61 (206)
T ss_dssp HHHHHHHHHSCCSSCC-HHHHHHHHTSCHHHHHHHCCSH
T ss_pred HHHHHHHHhcCccccc-HHHHHHHhCCCHHHHHHHcCCH
Confidence 3444568888875444 6678999999999999999987
No 272
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.99 E-value=91 Score=19.78 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCC
Q psy17007 51 VFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPF 99 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~ 99 (165)
.+++.+..++.-.|...- .-.++|..+|++...|+.|...-+.+
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 467788888877654332 35678999999999999998754433
No 273
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=23.97 E-value=53 Score=21.57 Aligned_cols=39 Identities=10% Similarity=0.273 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|.+..|-... ...||...|++..-+...|.|+
T Consensus 14 l~aa~~l~~~~G~~~~t-i~~Ia~~agvs~~t~Y~~F~sK 52 (188)
T 3qkx_A 14 FSATDRLMAREGLNQLS-MLKLAKEANVAAGTIYLYFKNK 52 (188)
T ss_dssp HHHHHHHHHHSCSTTCC-HHHHHHHHTCCHHHHHHHSSSH
T ss_pred HHHHHHHHHhcCcccCC-HHHHHHHhCCCcchHHHHcCCH
Confidence 34555568888875443 6778999999999999999987
No 274
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=23.91 E-value=46 Score=23.23 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 58 TGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 58 ~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+...+.|.+..|-... ...||...|++..-|..+|.++
T Consensus 50 ~aA~~l~~~~G~~~~t-v~~IA~~AGvs~~t~Y~~F~sK 87 (229)
T 3bni_A 50 DACADLLDEVGYDALS-TRAVALRADVPIGSVYRFFGNK 87 (229)
T ss_dssp HHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHhcChhhcc-HHHHHHHHCCCchhHHHHcCCH
Confidence 3444557888875444 6678999999999999999987
No 275
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=23.86 E-value=39 Score=20.87 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCChhhhhhc
Q psy17007 145 PERVELATALQLSETQLFYV 164 (165)
Q Consensus 145 ~~r~~La~~lgl~~~qVq~~ 164 (165)
.+=..||..+|+++.+|..|
T Consensus 26 ~~Wk~Lar~Lg~~~~~I~~I 45 (99)
T 1fad_A 26 RDWKRLARELKVSEAKMDGI 45 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred hhHHHHHHHcCCCHHHHHHH
Confidence 34578999999999998765
No 276
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=23.79 E-value=52 Score=22.41 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|.+..|-... ...||...|++..-+..+|.++
T Consensus 36 l~aA~~l~~~~G~~~~t-~~~IA~~aGvs~~t~Y~~F~sK 74 (222)
T 3bru_A 36 IRAGLEHLTEKGYSSVG-VDEILKAARVPKGSFYHYFRNK 74 (222)
T ss_dssp HHHHHHHHHHSCTTTCC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCCCcCc-HHHHHHHhCCCcchhhhhCCCH
Confidence 34455568888775444 6678999999999999999987
No 277
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=23.62 E-value=1.6e+02 Score=19.32 Aligned_cols=51 Identities=8% Similarity=0.007 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHH------hccchhhhhhhhccCCCC
Q psy17007 49 RTVFSDHQLTGLEKRFEAQRYLSTPERVE-LATA------LQLSETQVKTWFQNRLPF 99 (165)
Q Consensus 49 R~~~s~~q~~~Le~~f~~~~~p~~~~~~~-la~~------l~l~~~~V~~WF~nrr~~ 99 (165)
...++.++...+......++..+..+... |... ..++...|..|....+..
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~ 138 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQ 138 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCC
Confidence 34577778888888887777666554433 2221 247888999999765443
No 278
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=23.60 E-value=26 Score=21.14 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCChhhhhhc
Q psy17007 146 ERVELATALQLSETQLFYV 164 (165)
Q Consensus 146 ~r~~La~~lgl~~~qVq~~ 164 (165)
.-.+||..+|++...|...
T Consensus 29 t~~eLA~~Lgvsr~tV~~~ 47 (81)
T 1qbj_A 29 TAHDLSGKLGTPKKEINRV 47 (81)
T ss_dssp CHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 3468999999999888653
No 279
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=23.58 E-value=60 Score=21.85 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRL 97 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr 97 (165)
+....+.|.+..|-... ...||...|++..-+...|.|+-
T Consensus 23 l~aa~~l~~~~G~~~~t-i~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 23 STVGIELFTEQGFDATS-VDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHCTTTSC-HHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCCcchHhhhCCCHH
Confidence 44555568888875444 66789999999999999999874
No 280
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=23.54 E-value=53 Score=22.32 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 59 GLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 59 ~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
.....|....|-... ...||...|++..-|...|.|+
T Consensus 25 aA~~l~~~~G~~~~t-~~~IA~~agvs~~t~Y~~F~sK 61 (218)
T 3gzi_A 25 AARNLFIERPYAQVS-IREIASLAGTDPGLIRYYFGSK 61 (218)
T ss_dssp HHHHHHHTSCCSCCC-HHHHHHHHTSCTHHHHHHHSSH
T ss_pred HHHHHHHHCCCCcCC-HHHHHHHhCCCHHHHHHHcCCH
Confidence 344457788875444 6678999999999999999987
No 281
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=23.42 E-value=52 Score=19.97 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=18.9
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|-.++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~ 67 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGR 67 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCcCHHHHHHHHcCC
Confidence 4679999999999999998754
No 282
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=23.38 E-value=49 Score=22.17 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 58 TGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 58 ~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
....+.|....|-... ...||...|++..-+...|.++
T Consensus 19 ~aa~~l~~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK 56 (202)
T 3lwj_A 19 TCSLDLFIEKGYYNTS-IRDIIALSEVGTGTFYNYFVDK 56 (202)
T ss_dssp HHHHHHHHHHCTTTCC-HHHHHHHHCSCHHHHHHHCSSH
T ss_pred HHHHHHHHHcCcccCC-HHHHHHHhCCCchhHHHHcCCH
Confidence 3445568888874433 6678999999999999999986
No 283
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=23.26 E-value=1.3e+02 Score=18.99 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHhc--cchhhhhhhhc
Q psy17007 49 RTVFSDHQLTGLEKRFEA------QRYLSTPERVELATALQ--LSETQVKTWFQ 94 (165)
Q Consensus 49 R~~~s~~q~~~Le~~f~~------~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 94 (165)
-..++.+++..|...|.. +.+.+..+-..+...+| ++...+..+|.
T Consensus 9 ~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 9 VEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356899999999999853 45678888888777777 45667777775
No 284
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=22.95 E-value=50 Score=22.48 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 58 TGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 58 ~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
..-.+.|.+..|-... ...||...|++..-|..+|.|+
T Consensus 17 ~aA~~lf~~~G~~~~s-~~~IA~~aGvs~~t~Y~~F~sK 54 (210)
T 3vib_A 17 LAALETFYRKGIARTS-LNEIAQAAGVTRDALYWHFKNK 54 (210)
T ss_dssp HHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHhCcccCC-HHHHHHHHCcCHHHHHHHCCCH
Confidence 3444568888886544 6678999999999999999987
No 285
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.90 E-value=76 Score=20.52 Aligned_cols=39 Identities=21% Similarity=0.110 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhcc
Q psy17007 51 VFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~n 95 (165)
.+++.+..++. .|. ....-.++|..+|++...|+.+...
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45555555665 332 2224677899999999999988764
No 286
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=22.82 E-value=1.1e+02 Score=17.27 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhc--cchhhhhhhhc
Q psy17007 50 TVFSDHQLTGLEKRFEA-----QRYLSTPERVELATALQ--LSETQVKTWFQ 94 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 94 (165)
..++.++...|...|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45789999999999964 34567777777666666 34556666664
No 287
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=22.78 E-value=49 Score=22.11 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|.+..|-... ...||...|++..-+...|.|+
T Consensus 17 l~aA~~lf~~~G~~~~s-~~~Ia~~agvs~~t~Y~~F~sK 55 (203)
T 3b81_A 17 ANKIWDIFIANGYENTT-LAFIINKLGISKGALYHYFSSK 55 (203)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHTTCSSH
T ss_pred HHHHHHHHHHcCcccCc-HHHHHHHhCCCchhHHHHcCCH
Confidence 34445568888875443 6678999999999999999987
No 288
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=22.74 E-value=43 Score=22.47 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|.+..|-... ...||...|++..-+...|.|+
T Consensus 22 l~aa~~l~~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK 60 (211)
T 3him_A 22 RAAAIEVFAAKGYGATT-TREIAASLDMSPGAVYPHYKTK 60 (211)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHTTCCTTSSTTTCSSH
T ss_pred HHHHHHHHHHcCCCcCC-HHHHHHHhCCCcChhhhcCCCH
Confidence 44455568888875444 6678999999999999999987
No 289
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=22.66 E-value=63 Score=21.79 Aligned_cols=41 Identities=5% Similarity=0.046 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCC
Q psy17007 56 QLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRL 97 (165)
Q Consensus 56 q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr 97 (165)
=+..-...|.++.|-... ...||...|++..-+...|.|+.
T Consensus 15 Il~aA~~lf~~~G~~~~s-~~~Ia~~Agvskgt~Y~yF~sKe 55 (197)
T 2f07_A 15 ILQAAIEVISEKGLDKAS-ISDIVKKAGTAQGTFYLYFSSKN 55 (197)
T ss_dssp HHHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSST
T ss_pred HHHHHHHHHHHhCcccCC-HHHHHHHhCCCchHHHHhCCCHH
Confidence 345555668888885444 66789999999999999999874
No 290
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.61 E-value=33 Score=20.65 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCCCc
Q psy17007 50 TVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLPFG 100 (165)
Q Consensus 50 ~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~~~ 100 (165)
..++..+.++|.-.+ ..+. ..++|..+|++...|+.+..+-+.+.
T Consensus 28 ~~Lt~~e~~vl~l~~--~g~s----~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 28 EMLTEREMEILLLIA--KGYS----NQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GGCCSHHHHHHHHHH--TTCC----TTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHH--cCCC----HHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 468889999987743 2332 45679999999999999887544443
No 291
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.48 E-value=38 Score=18.35 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=19.0
Q ss_pred HHHHHHHhccchhhhhhhhccCCC
Q psy17007 75 RVELATALQLSETQVKTWFQNRLP 98 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nrr~ 98 (165)
-.++|..+|++...|+.+..+-+.
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 357899999999999988865433
No 292
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=22.45 E-value=49 Score=22.46 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 58 TGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 58 ~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
..-.+.|.+..|-... ...||...|++..-|..+|.|+
T Consensus 18 ~aA~~lf~~~G~~~~s-~~~IA~~agvs~~t~Y~~F~sK 55 (212)
T 2ras_A 18 DVAQAIVEERGGAGLT-LSELAARAGISQANLSRYFETR 55 (212)
T ss_dssp HHHHHHHHHHTSSCCC-HHHHHHHHTSCHHHHTTTCSSH
T ss_pred HHHHHHHHHhCcccCc-HHHHHHHhCCCHHHHHHHcCCH
Confidence 3444568888875544 6678999999999999999987
No 293
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=22.29 E-value=52 Score=22.19 Aligned_cols=39 Identities=8% Similarity=0.114 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|....|-... ...||...|++..-|...|.|+
T Consensus 20 l~aa~~l~~~~G~~~~t-i~~IA~~agvs~~t~Y~~F~sK 58 (212)
T 3knw_A 20 LDSGFHLVLRKGFVGVG-LQEILKTSGVPKGSFYHYFESK 58 (212)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCCccCC-HHHHHHHhCCChHHHHHHCCCH
Confidence 34445568888775443 6678999999999999999987
No 294
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=22.23 E-value=57 Score=18.93 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=19.1
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|..++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~ 51 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGR 51 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 4589999999999999999764
No 295
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.12 E-value=53 Score=22.35 Aligned_cols=39 Identities=8% Similarity=0.181 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+..-.+.|.++.|-... ...||...|++..-|..+|.++
T Consensus 14 l~aA~~lf~~~G~~~~s-~~~IA~~aGvs~~tiY~~F~sK 52 (202)
T 2d6y_A 14 FEAAVAEFARHGIAGAR-IDRIAAEARANKQLIYAYYGNK 52 (202)
T ss_dssp HHHHHHHHHHHTTTSCC-HHHHHHHHTCCHHHHHHHHSSH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCCHHHHHHHcCCH
Confidence 44555668888875444 6678999999999999999987
No 296
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=22.03 E-value=96 Score=17.56 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhc-cchhhhhhhhc
Q psy17007 51 VFSDHQLTGLEKRFEA-----QRYLSTPERVELATALQ-LSETQVKTWFQ 94 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~-----~~~p~~~~~~~la~~l~-l~~~~V~~WF~ 94 (165)
.++.++...|...|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5688889999998864 34566676666666665 45555666654
No 297
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=21.97 E-value=55 Score=18.02 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=18.5
Q ss_pred HHHHHHHhc--cchhhhhhhhccC
Q psy17007 75 RVELATALQ--LSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~--l~~~~V~~WF~nr 96 (165)
...||..+| ++...|..|..++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~ 47 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGD 47 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCC
Confidence 467899999 9999999998753
No 298
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=21.90 E-value=65 Score=21.14 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+..-.+.|.+..|-... ...||...|++..-|...|.|+
T Consensus 13 l~aA~~l~~~~G~~~~s-~~~IA~~agvs~~tly~~F~sK 51 (180)
T 2fd5_A 13 LGAATQALLERGAVEPS-VGEVMGAAGLTVGGFYAHFQSK 51 (180)
T ss_dssp HHHHHHHHHHHTTTSCC-HHHHHHHTTCCGGGGGGTCSCH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCccHHHHHCCCH
Confidence 34445568888875443 6678999999999999999987
No 299
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=21.75 E-value=50 Score=22.10 Aligned_cols=41 Identities=10% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccCCC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLP 98 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrr~ 98 (165)
+....+.|.+..|-... ...||...|++..-+..+|.++..
T Consensus 13 l~aA~~l~~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK~~ 53 (195)
T 2dg7_A 13 KRAALELYSEHGYDNVT-VTDIAERAGLTRRSYFRYFPDKRE 53 (195)
T ss_dssp HHHHHHHHHHSCGGGCC-HHHHHHHTTCCHHHHHHHCSSTTG
T ss_pred HHHHHHHHHhcCccccC-HHHHHHHhCCCHHHHHHHcCCHHH
Confidence 44555568888774433 667899999999999999998743
No 300
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=21.69 E-value=54 Score=22.26 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+..-.+.|.+..|-... ...||...|++..-|..+|.|+
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~IA~~agvsk~tlY~yF~sK 58 (199)
T 3crj_A 20 MQATYRALREHGYADLT-IQRIADEYGKSTAAVHYYYDTK 58 (199)
T ss_dssp HHHHHHHHHHHTTTTCC-HHHHHHHHTSCHHHHHTTCSSH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCChhHHhhhcCCH
Confidence 34445568888886544 6678999999999999999987
No 301
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=21.67 E-value=61 Score=19.08 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=18.8
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...||..+|++...|..|-.++
T Consensus 30 q~elA~~~gis~~~is~~E~G~ 51 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRE 51 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 4578999999999999998764
No 302
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=21.67 E-value=55 Score=22.03 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 58 TGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 58 ~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
....+.|.+..|-... ...||...|++..-+...|.|+
T Consensus 25 ~aa~~l~~~~G~~~~s-~~~Ia~~agvs~~t~Y~~F~sK 62 (212)
T 1pb6_A 25 SAALDTFSQFGFHGTR-LEQIAELAGVSKTNLLYYFPSK 62 (212)
T ss_dssp HHHHHHHHHHCTTTCC-HHHHHHHTTSCHHHHHHHSSSH
T ss_pred HHHHHHHHHcCcchhh-HHHHHHHHCCChhHHHHhCCCH
Confidence 3444557788774443 6678999999999999999987
No 303
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=21.54 E-value=36 Score=23.35 Aligned_cols=38 Identities=8% Similarity=0.157 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+..-.+.|.+..|- .....||...|++..-|..+|.|+
T Consensus 18 l~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK 55 (224)
T 1t33_A 18 IAAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSK 55 (224)
T ss_dssp HHHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCH
Confidence 34444568888776 557888999999999999999987
No 304
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=21.45 E-value=56 Score=21.76 Aligned_cols=38 Identities=11% Similarity=0.233 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 58 TGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 58 ~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
....+.|.+..|-... ...||...|++..-+...|.|+
T Consensus 21 ~aa~~l~~~~G~~~~t-i~~Ia~~agvs~~t~Y~~F~sK 58 (203)
T 3f1b_A 21 DAAVDVFSDRGFHETS-MDAIAAKAEISKPMLYLYYGSK 58 (203)
T ss_dssp HHHHHHHHHHCTTTCC-HHHHHHHTTSCHHHHHHHCCSH
T ss_pred HHHHHHHHHcCccccc-HHHHHHHhCCchHHHHHHhCCH
Confidence 3444567788775443 6678999999999999999987
No 305
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=21.40 E-value=64 Score=21.69 Aligned_cols=39 Identities=10% Similarity=0.312 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+......|.+..|-.. ....||...|++..-+...|.++
T Consensus 18 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~~K 56 (189)
T 3vp5_A 18 YDACLNEFQTHSFHEA-KIMHIVKALDIPRGSFYQYFEDL 56 (189)
T ss_dssp HHHHHHHHHHSCTTTC-CHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHCCcccc-cHHHHHHHhCCChHHHHHHCCCH
Confidence 3455556888887554 46778999999999999999986
No 306
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=21.38 E-value=1.5e+02 Score=18.25 Aligned_cols=43 Identities=14% Similarity=0.120 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhcc
Q psy17007 49 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 49 R~~~s~~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~n 95 (165)
+.+++.+....+........- ...++|...+|+..+|..|-..
T Consensus 30 ~rrWs~~~Kl~VV~~~~~g~~----s~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIHGLI----TEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTTSS----CHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHcCCC----CHHHHHHHhCCCHHHHHHHHHH
Confidence 345777765544443333332 2557899999999999999864
No 307
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=21.36 E-value=56 Score=21.67 Aligned_cols=41 Identities=12% Similarity=0.252 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 55 HQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 55 ~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
.=+....+.|....|-... ...||...|++..-+...|.|+
T Consensus 15 ~il~aa~~lf~~~G~~~~t-v~~Ia~~agvs~~t~Y~~F~sK 55 (196)
T 3he0_A 15 QILAAAEQLIAESGFQGLS-MQKLANEAGVAAGTIYRYFSDK 55 (196)
T ss_dssp HHHHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHhCcccCC-HHHHHHHhCCCcchHHHhcCCH
Confidence 3445666678888875444 6678999999999999999987
No 308
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=21.35 E-value=1e+02 Score=21.84 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=33.2
Q ss_pred CCCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 47 KARTVFSDHQ-LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 47 r~R~~~s~~q-~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+.+...+.++ +..-.+.|....|-... ...||..+|++..-+...|.|+
T Consensus 11 ~~~~~~~r~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~tlY~hF~~K 60 (237)
T 2hxo_A 11 RRQEPLSRERIVGAAVELLDTVGERGLT-FRALAERLATGPGAIYWHITGK 60 (237)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTTTCC-HHHHHHHHTSCGGGGGGTCCCH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCcccCC-HHHHHHHHCCChHHHHHhcCCH
Confidence 3344455544 34555668888775444 6678999999999999999987
No 309
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=21.31 E-value=57 Score=21.96 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+..-...|.++.|-... ...||...|++..-+...|.|+
T Consensus 18 l~aA~~lf~~~G~~~~s-~~~IA~~aGvs~~tlY~~F~sK 56 (197)
T 2hyt_A 18 LATARKVFSERGYADTS-MDDLTAQASLTRGALYHHFGDK 56 (197)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTCCTTHHHHHHSSH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHcCCH
Confidence 34445568888885444 6678999999999999999987
No 310
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=21.25 E-value=1.1e+02 Score=17.51 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhcc--chhhhhhhhc
Q psy17007 51 VFSDHQLTGLEKRFEA-----QRYLSTPERVELATALQL--SETQVKTWFQ 94 (165)
Q Consensus 51 ~~s~~q~~~Le~~f~~-----~~~p~~~~~~~la~~l~l--~~~~V~~WF~ 94 (165)
.++..++..|...|.. +.+.+..+...+...+|. +...|..+|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5788999999999864 446777777777777764 4556666664
No 311
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=21.17 E-value=56 Score=22.01 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|.+..|-... ...||...|++..-+..+|.++
T Consensus 20 l~aa~~l~~~~G~~~~t-i~~Ia~~agvs~~t~Y~~F~sK 58 (220)
T 3lhq_A 20 LDVALRLFSQQGVSATS-LAEIANAAGVTRGAIYWHFKNK 58 (220)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCCceeehhhcCCH
Confidence 34455568888775443 6678999999999999999986
No 312
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=21.04 E-value=58 Score=21.50 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+..-.+.|.+..|-... ...||...|++..-+...|.++
T Consensus 8 l~aA~~lf~~~Gy~~~s-~~~Ia~~agvskgtlY~~F~sK 46 (179)
T 2eh3_A 8 LEVSKELFFEKGYQGTS-VEEIVKRANLSKGAFYFHFKSK 46 (179)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCCccCC-HHHHHHHhCCCcHHHHHHcCCH
Confidence 34445568888885444 6678999999999999999886
No 313
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=20.93 E-value=65 Score=21.94 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 59 GLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 59 ~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
.-.+.|.++.|-... ...||...|++..-|...|.|+
T Consensus 19 aA~~lf~~~G~~~~s-~~~IA~~aGvskgtlY~~F~sK 55 (210)
T 2wui_A 19 AAERVFLEKGVGTTA-MADLADAAGVSRGAVYGHYKNK 55 (210)
T ss_dssp HHHHHHHHSCTTTCC-HHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHcCccccC-HHHHHHHhCCCHHHHHHHcCCH
Confidence 334568888885444 6678999999999999999987
No 314
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=20.81 E-value=1.3e+02 Score=21.05 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhh
Q psy17007 55 HQLTGLEKRFEAQRYLSTPERVELATALQLSETQVK 90 (165)
Q Consensus 55 ~q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~ 90 (165)
.-+..|...=+...|.+.+....+|..+||+..+|.
T Consensus 26 ~li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 26 AIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp GHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHH
Confidence 344555554455689999999999999999998874
No 315
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.74 E-value=39 Score=23.12 Aligned_cols=39 Identities=10% Similarity=0.274 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|.+..|-... ...||...|++..-+..+|.|+
T Consensus 14 l~aA~~lf~~~Gy~~~s-~~~IA~~AGvs~gt~Y~yF~sK 52 (206)
T 1vi0_A 14 IDAAVEVIAENGYHQSQ-VSKIAKQAGVADGTIYLYFKNK 52 (206)
T ss_dssp HHHHHHHHHHHCGGGCC-HHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCChhHHHHHcCCH
Confidence 44555668888875433 6678999999999999999987
No 316
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=20.67 E-value=60 Score=20.11 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=20.4
Q ss_pred HHHHHHHhccchhhhhhhhccCCC
Q psy17007 75 RVELATALQLSETQVKTWFQNRLP 98 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nrr~ 98 (165)
...||..+|++...|..|-.+++.
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~~ 48 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGETK 48 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567899999999999999987643
No 317
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=20.59 E-value=59 Score=22.02 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 58 TGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 58 ~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
..-.+.|.+..|-... ...||...|++..-|..+|.|+
T Consensus 16 ~aA~~lf~~~G~~~~s-~~~IA~~aGvsk~tlY~~F~sK 53 (203)
T 3cdl_A 16 QAAIAEFGDRGFEITS-MDRIAARAEVSKRTVYNHFPSK 53 (203)
T ss_dssp HHHHHHHHHHCTTTCC-HHHHHHHTTSCHHHHHTTSSSH
T ss_pred HHHHHHHHHcCchhcC-HHHHHHHhCCCHHHHHHHCCCH
Confidence 3344458888885444 6678999999999999999987
No 318
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=20.55 E-value=58 Score=22.91 Aligned_cols=39 Identities=10% Similarity=0.215 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+......|....|-... ...||...|++..-|...|.|+
T Consensus 29 l~aA~~lf~~~G~~~~s-~~~IA~~agvs~~tlY~~F~sK 67 (231)
T 2zcx_A 29 LDAARELGTERGIREIT-LTDIAATVGMHKSALLRYFETR 67 (231)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHhCCcccCC-HHHHHHHhCCCHHHHHHhCCCH
Confidence 34445568888875443 6678999999999999999987
No 319
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=20.52 E-value=69 Score=19.41 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.1
Q ss_pred HHHHHHHHhccchhhhhhhhcc
Q psy17007 74 ERVELATALQLSETQVKTWFQN 95 (165)
Q Consensus 74 ~~~~la~~l~l~~~~V~~WF~n 95 (165)
....||..+|++...+...|+.
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4678999999999999999963
No 320
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=20.51 E-value=60 Score=21.55 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+......|....|-... ...||...|++..-|..+|.++
T Consensus 14 l~aA~~l~~~~G~~~~t-~~~IA~~Agvs~~tly~~F~sK 52 (194)
T 3dpj_A 14 VAAADELFYRQGFAQTS-FVDISAAVGISRGNFYYHFKTK 52 (194)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHHCCChHHHHHHcCCH
Confidence 33445567788775444 6678999999999999999987
No 321
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=20.39 E-value=43 Score=22.22 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 59 GLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 59 ~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
.-.+.|... .......||...|++..-|..+|.|+
T Consensus 22 aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK 56 (190)
T 2v57_A 22 AAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPER 56 (190)
T ss_dssp HHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 334456665 55567789999999999999999987
No 322
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=20.39 E-value=60 Score=21.80 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 57 LTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 57 ~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
+....+.|....|-... ...||...|++..-+...|.++
T Consensus 22 l~aa~~lf~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK 60 (213)
T 2qtq_A 22 LQTASNIMREGDVVDIS-LSELSLRSGLNSALVKYYFGNK 60 (213)
T ss_dssp HHHHHHHHHHHTSSCCC-HHHHHHHHCCCHHHHHHHHSSH
T ss_pred HHHHHHHHHHcCccccc-HHHHHHHhCCChhhHhHhcCCH
Confidence 44555668888875544 6677999999999999999987
No 323
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=20.38 E-value=87 Score=17.20 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhcc--chhhhhhhhc
Q psy17007 52 FSDHQLTGLEKRFEA-----QRYLSTPERVELATALQL--SETQVKTWFQ 94 (165)
Q Consensus 52 ~s~~q~~~Le~~f~~-----~~~p~~~~~~~la~~l~l--~~~~V~~WF~ 94 (165)
++..+...|...|.. +.+.+..+-..+...+|. +...|..+|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 467788888888854 345677777777666664 4556666664
No 324
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=20.30 E-value=37 Score=22.98 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=22.7
Q ss_pred HHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 63 RFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 63 ~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
.|.+..|-.. ....||...|++..-+..+|.|+
T Consensus 37 lf~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK 69 (212)
T 3nxc_A 37 LESSDGSQRI-TTAKLAASVGVSEAALYRHFPSK 69 (212)
T ss_dssp HHC------C-CHHHHHHHTTSCHHHHHTTCSSH
T ss_pred HHhcCChhhc-CHHHHHHHhCCChhHHHHHCCCH
Confidence 4566666443 46778999999999999999987
No 325
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.28 E-value=56 Score=21.51 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhcc-C
Q psy17007 56 QLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQN-R 96 (165)
Q Consensus 56 q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~n-r 96 (165)
=+....+.|.+..|-... ...||...|++..-+...|.| +
T Consensus 11 Il~aa~~l~~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~~sK 51 (191)
T 1sgm_A 11 ILHTASRLSQLQGYHATG-LNQIVKESGAPKGSLYHFFPNGK 51 (191)
T ss_dssp HHHHHHHHHHHHCTTTCC-HHHHHHHHCCCSCHHHHSTTTCH
T ss_pred HHHHHHHHHHHcCccccC-HHHHHHHHCCCchhHHHHccccH
Confidence 345556678888875444 567899999999999999997 6
No 326
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=20.28 E-value=50 Score=20.97 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=15.7
Q ss_pred HHHHHHHHcCCChhhhhhc
Q psy17007 146 ERVELATALQLSETQLFYV 164 (165)
Q Consensus 146 ~r~~La~~lgl~~~qVq~~ 164 (165)
.=..||..+|++..+|..|
T Consensus 31 ~Wk~LAr~Lg~s~~~I~~I 49 (111)
T 2yqf_A 31 SWAELARELQFSVEDINRI 49 (111)
T ss_dssp THHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHH
Confidence 4468999999999988765
No 327
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=20.27 E-value=61 Score=18.80 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=20.6
Q ss_pred ccchhhhhhhcc-----ccCCCCHHHHHHHHHHcC--CChhhhh
Q psy17007 126 DHQLTGLEKRFE-----AQRYLSTPERVELATALQ--LSETQLF 162 (165)
Q Consensus 126 ~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~lg--l~~~qVq 162 (165)
.++...|...|. .+-+++..+...+...+| ++..+|.
T Consensus 5 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~ 48 (92)
T 2kn2_A 5 TDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVE 48 (92)
T ss_dssp CHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHH
T ss_pred ccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHH
Confidence 344555555553 244566666666666666 4444444
No 328
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=20.20 E-value=63 Score=17.72 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=18.5
Q ss_pred HHHHHHHhccchhhhhhhhccC
Q psy17007 75 RVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 75 ~~~la~~l~l~~~~V~~WF~nr 96 (165)
...+|..+|++...|..|..+.
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4568999999999999999554
No 329
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=20.11 E-value=41 Score=22.25 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 56 QLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 56 q~~~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
=+....+.|.+..|-... ...||...|++..-+..+|.|+
T Consensus 13 Il~aa~~l~~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK 52 (183)
T 1zk8_A 13 IVETAAEIADANGVQEVT-LASLAQTLGVRSPSLYNHVKGL 52 (183)
T ss_dssp HHHHHHHHHHHHCGGGCC-HHHHHHHHTSCHHHHTTTCSSH
T ss_pred HHHHHHHHHHhcCccccC-HHHHHHHcCCCchHHHHHcCCH
Confidence 344556668887775433 6678999999999999999986
No 330
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=20.04 E-value=32 Score=19.47 Aligned_cols=16 Identities=13% Similarity=-0.002 Sum_probs=11.9
Q ss_pred HHHHHcCCChhhhhhc
Q psy17007 149 ELATALQLSETQLFYV 164 (165)
Q Consensus 149 ~La~~lgl~~~qVq~~ 164 (165)
.=|..+|++..+|+.|
T Consensus 20 ~~Ak~lGlsleEIref 35 (57)
T 1b0n_B 20 VEAKEANISPEEIRKY 35 (57)
T ss_dssp HHHHHTTCCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHH
Confidence 3477888888888765
No 331
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.02 E-value=61 Score=21.96 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhccchhhhhhhhccC
Q psy17007 59 GLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96 (165)
Q Consensus 59 ~Le~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 96 (165)
.-.+.|.+..|-... ...||...|++..-+..+|.|+
T Consensus 20 aA~~lf~~~Gy~~ts-~~~IA~~agvs~gtlY~yF~sK 56 (205)
T 1rkt_A 20 AAKTVFKRKGFELTT-MKDVVEESGFSRGGVYLYFSST 56 (205)
T ss_dssp HHHHHHHHHCSTTCC-HHHHHHHHTSCHHHHHTTCSCH
T ss_pred HHHHHHHHcCcccCC-HHHHHHHHCCCcchhhhhCCCH
Confidence 444458888885444 6678999999999999999987
No 332
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.01 E-value=49 Score=20.26 Aligned_cols=37 Identities=11% Similarity=0.016 Sum_probs=23.3
Q ss_pred chhhhhhhcc-----ccCCCCHHHHHHHHHHcCCChhhhhhc
Q psy17007 128 QLTGLEKRFE-----AQRYLSTPERVELATALQLSETQLFYV 164 (165)
Q Consensus 128 Q~~~Le~~F~-----~~~yp~~~~r~~La~~lgl~~~qVq~~ 164 (165)
+...+..+|. .+-+++..+-..+...+|++..+|+-|
T Consensus 9 ~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~~~~l~~i 50 (99)
T 1qjt_A 9 GNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKI 50 (99)
T ss_dssp TCTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3445555553 345677777777777777777766544
Done!