RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17007
(165 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 79.1 bits (196), Expect = 2e-20
Identities = 30/51 (58%), Positives = 33/51 (64%)
Query: 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
R+ RT F+ QL LEK FE RY S ER ELA L L+E QVK WFQNR
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNR 51
Score = 59.0 bits (144), Expect = 1e-12
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFY 163
R+ RT F+ QL LEK FE RY S ER ELA L L+E Q+
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKV 46
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 71.5 bits (176), Expect = 1e-17
Identities = 29/52 (55%), Positives = 33/52 (63%)
Query: 45 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
+R+ RT F+ QL LEK F+ Y S ER ELA L LSE QVK WFQNR
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNR 52
Score = 51.9 bits (125), Expect = 6e-10
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 117 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
+R+ RT F+ QL LEK F+ Y S ER ELA L LSE Q
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQ 44
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 69.2 bits (170), Expect = 1e-16
Identities = 29/51 (56%), Positives = 32/51 (62%)
Query: 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
R+ RT F+ QL LEK FE Y S ER ELA L L+E QVK WFQNR
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNR 51
Score = 49.9 bits (120), Expect = 4e-09
Identities = 22/43 (51%), Positives = 25/43 (58%)
Query: 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
R+ RT F+ QL LEK FE Y S ER ELA L L+E Q
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQ 43
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 48.2 bits (115), Expect = 1e-07
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 29 SLFSTSPHELGSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 88
S + GS + ++ RT +D QL LE+ FE Y S+ R++L+ L +
Sbjct: 37 SEMKLERKQDGSSPPKSKRRRT--TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKS 94
Query: 89 VKTWFQNR 96
V+ WFQN+
Sbjct: 95 VQIWFQNK 102
Score = 33.2 bits (76), Expect = 0.026
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 101 SLFSTSPHELGSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSE 158
S + GS + ++ RT +D QL LE+ FE Y S+ R++L+ L +
Sbjct: 37 SEMKLERKQDGSSPPKSKRRRT--TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPP 92
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 26.7 bits (60), Expect = 0.92
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 74 ERVELATALQLSETQVKTWFQN 95
E+ ELA LS Q+ WF N
Sbjct: 15 EKSELARQTGLSRKQIDNWFIN 36
>gnl|CDD|239275 cd02977, ArsC_family, Arsenate Reductase (ArsC) family; composed
of TRX-fold arsenic reductases and similar proteins
including the transcriptional regulator, Spx. ArsC
catalyzes the reduction of arsenate [As(V)] to arsenite
[As(III)], using reducing equivalents derived from
glutathione (GSH) via glutaredoxin (GRX), through a
single catalytic cysteine. This family of predominantly
bacterial enzymes is unrelated to two other families of
arsenate reductases which show similarity to
low-molecular-weight acid phosphatases and
phosphotyrosyl phosphatases. Spx is a general regulator
that exerts negative and positive control over
transcription initiation by binding to the C-terminal
domain of the alpha subunit of RNA polymerase.
Length = 105
Score = 27.8 bits (63), Expect = 1.2
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 39 GSKHCRR-RKARTVFSDHQLTGLEKRFEAQRYLSTP-ERVELATALQLSETQVKTWF 93
G+ +C RKA +H + +E YL P + EL L V+ F
Sbjct: 5 GNPNCSTSRKALAWLEEHGIE-----YEFIDYLKEPPTKEELKELLAKLGLGVEDLF 56
>gnl|CDD|239330 cd03032, ArsC_Spx, Arsenate Reductase (ArsC) family, Spx
subfamily; Spx is a unique RNA polymerase
(RNAP)-binding protein present in bacilli and some
mollicutes. It inhibits transcription by binding to the
C-terminal domain of the alpha subunit of RNAP,
disrupting complex formation between RNAP and certain
transcriptional activator proteins like ResD and ComA.
In response to oxidative stress, Spx can also activate
transcription, making it a general regulator that
exerts both positive and negative control over
transcription initiation. Spx has been shown to exert
redox-sensitive transcriptional control over genes like
trxA (TRX) and trxB (TRX reductase), genes that
function in thiol homeostasis. This redox-sensitive
activity is dependent on the presence of a CXXC motif,
present in some members of the Spx subfamily, that acts
as a thiol/disulfide switch. Spx has also been shown to
repress genes in a sulfate-dependent manner independent
of the presence of the CXXC motif.
Length = 115
Score = 27.6 bits (62), Expect = 1.6
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
RKA+ +HQ+ E+ Q + EL L L+E V+ R
Sbjct: 14 RKAKQWLEEHQIPFEERNLFKQ----PLTKEELKEILSLTENGVEDIISTR 60
Score = 26.8 bits (60), Expect = 3.6
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQLFYVI 165
RKA+ +HQ+ E+ Q + EL L L+E + +I
Sbjct: 14 RKAKQWLEEHQIPFEERNLFKQ----PLTKEELKEILSLTENGVEDII 57
>gnl|CDD|152005 pfam11569, Homez, Homeodomain leucine-zipper encoding, Homez.
Homez contains two leucine zipper-like motifs and an
acidic domain and belongs to the superfamily of
homeobox-containing proteins. The presence of leucine
zippers suggests that Homez can function as a homo or
heterodimer in the nucleus. It is thought that the
first leucine zipper and homeodomain 1 (HD1)of Homez is
responsible for dimerisation and HD2 has a specific
DNA-binding activity. Homez is also thought to function
as a transcriptional repressor due to the acidic region
in its C-terminal domain. Homez is involved in a
complex regulatory network.
Length = 57
Score = 26.3 bits (58), Expect = 2.4
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 60 LEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNRLP 98
L+ + L + L +S QV+ WF +R+
Sbjct: 14 LKDYYLQHHLLQEKDLDGLCEKSGMSYEQVRDWFASRMS 52
>gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase;
Validated.
Length = 332
Score = 27.1 bits (60), Expect = 4.1
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 16 DSFYITPQGLPFGSLFSTSPHELGSKHCRRRKARTVFSD 54
D +I P G+L S S+ CR++ A +F D
Sbjct: 124 DLIFIVSPDNPLGNLISRDSLLTISEICRKKGAL-LFID 161
>gnl|CDD|180965 PRK07408, PRK07408, RNA polymerase sigma factor SigF; Reviewed.
Length = 256
Score = 26.8 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 66 AQRYLSTPERVELATALQLSET---QVKTWFQNRLP 98
Q P E+A AL +S ++K QNR P
Sbjct: 123 RQELGRQPTDQEIAQALDISLEEWQEIKLALQNRTP 158
>gnl|CDD|236943 PRK11638, PRK11638, lipopolysaccharide biosynthesis protein WzzE;
Provisional.
Length = 342
Score = 26.9 bits (60), Expect = 5.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 60 LEKRFEAQRYLSTPE 74
L+ RF+ RYL TPE
Sbjct: 292 LDPRFQTYRYLRTPE 306
Score = 26.9 bits (60), Expect = 5.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 132 LEKRFEAQRYLSTPE 146
L+ RF+ RYL TPE
Sbjct: 292 LDPRFQTYRYLRTPE 306
>gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase.
Length = 340
Score = 26.2 bits (58), Expect = 9.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 71 STPERVELATALQLSETQVKTWFQNRLPF 99
ST + V+LA +L L + + + W ++ PF
Sbjct: 258 STSDYVKLAESLGLQDIKTEDWSEHVAPF 286
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.132 0.388
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,361,927
Number of extensions: 740305
Number of successful extensions: 644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 35
Length of query: 165
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 75
Effective length of database: 6,945,742
Effective search space: 520930650
Effective search space used: 520930650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)