RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17007
(165 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 73.3 bits (180), Expect = 1e-18
Identities = 26/63 (41%), Positives = 32/63 (50%)
Query: 34 SPHELGSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWF 93
+P RK R ++ HQ LEK F YL+ R E+A L L+E QVK WF
Sbjct: 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWF 61
Query: 94 QNR 96
QNR
Sbjct: 62 QNR 64
Score = 54.5 bits (131), Expect = 2e-11
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 106 SPHELGSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
+P RK R ++ HQ LEK F YL+ R E+A L L+E Q
Sbjct: 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQ 56
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 68.3 bits (167), Expect = 8e-17
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
++ RT F+ Q+ LEK FE Y R LA + L E +++ WF NR
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 52
Score = 50.6 bits (121), Expect = 6e-10
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
++ RT F+ Q+ LEK FE Y R LA + L E +
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEAR 44
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 66.8 bits (163), Expect = 2e-16
Identities = 31/51 (60%), Positives = 36/51 (70%)
Query: 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
+ + FS+ Q LEK+FE Q+YLS PER LA LQLSE QVKTWFQNR
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNR 51
Score = 48.7 bits (116), Expect = 2e-09
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
+ + FS+ Q LEK+FE Q+YLS PER LA LQLSE Q
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQ 43
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 66.3 bits (162), Expect = 4e-16
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 49 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
R ++ +Q LEK F RYL+ R+E+A AL L+E Q+K WFQNR
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNR 48
Score = 48.2 bits (115), Expect = 3e-09
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 121 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
R ++ +Q LEK F RYL+ R+E+A AL L+E Q
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQ 40
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 64.5 bits (157), Expect = 2e-15
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
RK R +S QL LE+ + A ++++ +R +++ A LSE Q+ WFQNR
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNR 52
Score = 45.6 bits (108), Expect = 3e-08
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
RK R +S QL LE+ + A ++++ +R +++ A LSE Q
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQ 44
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 64.6 bits (157), Expect = 4e-15
Identities = 29/58 (50%), Positives = 34/58 (58%)
Query: 39 GSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
RT F+ QLT LEK F +YLS RVE+A L+L+ETQVK WFQNR
Sbjct: 21 EPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNR 78
Score = 45.4 bits (107), Expect = 8e-08
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 111 GSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
RT F+ QLT LEK F +YLS RVE+A L+L+ETQ
Sbjct: 21 EPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQ 70
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 63.3 bits (154), Expect = 8e-15
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 44 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
+ + RTV ++ QL L + A + +L LS ++ WFQN+
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNK 54
Score = 45.2 bits (107), Expect = 7e-08
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 116 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
+ + RTV ++ QL L + A + +L LS
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRV 46
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 63.0 bits (153), Expect = 8e-15
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 47 KARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
+ RT FS QL L++ F RYL+ R +L++ L L+E Q+K WFQN
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNA 50
Score = 44.1 bits (104), Expect = 1e-07
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 119 KARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
+ RT FS QL L++ F RYL+ R +L++ L L+E Q
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQ 42
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 62.6 bits (152), Expect = 1e-14
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 49 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
R VF+D Q L F+ + S ++ ++ L L + V +F N
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNA 49
Score = 44.1 bits (104), Expect = 1e-07
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 121 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
R VF+D Q L F+ + S ++ ++ L L +
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELST 41
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 62.6 bits (152), Expect = 1e-14
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 44 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
++R++RT FS QL LE+ FE +Y R ELA L+E +++ WFQNR
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNR 53
Score = 45.7 bits (108), Expect = 4e-08
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 116 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
++R++RT FS QL LE+ FE +Y R ELA L+E +
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEAR 45
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 61.9 bits (150), Expect = 3e-14
Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 45 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
RRK R +FS Q+ LE+RF+ Q+YLS PER LA+ + L+ TQVK WFQN
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNH 53
Score = 44.5 bits (105), Expect = 1e-07
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 117 RRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
RRK R +FS Q+ LE+RF+ Q+YLS PER LA+ + L+ TQ
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQ 45
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 60.3 bits (146), Expect = 9e-14
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 47 KARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
K RT S LE+ F S+ E + +A L L + V+ WF NR
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNR 50
Score = 45.7 bits (108), Expect = 3e-08
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 119 KARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQL 161
K RT S LE+ F S+ E + +A L L + +
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVV 43
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 59.5 bits (144), Expect = 2e-13
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
RK RT F+ QL LE++F ++YLS ER E +++L L+ETQVK WFQNR
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 51
Score = 41.4 bits (97), Expect = 1e-06
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
RK RT F+ QL LE++F ++YLS ER E +++L L+ETQ
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQ 43
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 58.8 bits (142), Expect = 3e-13
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
R+ RT F+ QL LE F+ RY R E+A L+E +V+ WF+NR
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR 52
Score = 43.0 bits (101), Expect = 4e-07
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
R+ RT F+ QL LE F+ RY R E+A L+E +
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEAR 44
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 58.6 bits (142), Expect = 4e-13
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 46 RKARTVFSDHQLTGLEKRFEAQR---YLSTPERVELATALQLSETQVKTWFQNR 96
+ R V H + Y + E+ ++A L+ QV WF N
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINA 56
Score = 40.9 bits (96), Expect = 2e-06
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 118 RKARTVFSDHQLTGLEKRFEAQR---YLSTPERVELATALQLSETQ 160
+ R V H + Y + E+ ++A L+ Q
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQ 48
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 58.9 bits (142), Expect = 6e-13
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 41 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
++RK R +F+ Q LE+RF QRYLS PER LA+ ++L+ TQVK WFQN
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNH 60
Score = 43.5 bits (102), Expect = 3e-07
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 113 KHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQL 161
++RK R +F+ Q LE+RF QRYLS PER LA+ ++L+ TQ+
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQV 53
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 58.5 bits (141), Expect = 6e-13
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 44 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
R++ RT + LE F S + +A L L + V+ WF NR
Sbjct: 7 ARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNR 59
Score = 44.2 bits (104), Expect = 2e-07
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 116 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQL 161
R++ RT + LE F S + +A L L + +
Sbjct: 7 ARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVV 52
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 58.0 bits (140), Expect = 7e-13
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 49 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
++ S LE+ F ++ L++ E+ E+A ++ QV+ WF N+
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINK 48
Score = 40.3 bits (94), Expect = 3e-06
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 121 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
++ S LE+ F ++ L++ E+ E+A ++ Q
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQ 40
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 57.6 bits (139), Expect = 1e-12
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
R+ RT F+ Q+ LE+ F RYL+ P +L+ L L QVK WF+NR
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNR 52
Score = 39.5 bits (92), Expect = 8e-06
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
R+ RT F+ Q+ LE+ F RYL+ P +L+ L L Q
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQ 44
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 57.8 bits (139), Expect = 2e-12
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 15/66 (22%)
Query: 46 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELAT---------------ALQLSETQVK 90
R +R + L +E F +Y +R E+A +++ +V
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 91 TWFQNR 96
WF NR
Sbjct: 61 NWFANR 66
Score = 45.0 bits (106), Expect = 1e-07
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 118 RKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
R +R + L +E F +Y +R E+A A +
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQK 43
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 56.7 bits (137), Expect = 2e-12
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 47 KARTVFSDHQLTGLEKRFEAQ-RYLSTPERVELATALQLSETQVKTWFQNR 96
K V LEK F + +Y L+ L S +++ WF++R
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHR 53
Score = 39.0 bits (91), Expect = 1e-05
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 119 KARTVFSDHQLTGLEKRFEAQ-RYLSTPERVELATALQLSETQ 160
K V LEK F + +Y L+ L S +
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRK 45
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 56.1 bits (135), Expect = 3e-12
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 47 KARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
+ RT F+ QL LEK F + Y+S P R ELA L L E+ +K WFQNR
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNR 50
Score = 38.3 bits (89), Expect = 2e-05
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 119 KARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
+ RT F+ QL LEK F + Y+S P R ELA L L E+
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPEST 42
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 55.7 bits (134), Expect = 7e-12
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 46 RKARTVFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQVKTWFQNR 96
R+ R F+ L + F + Y S + ELA ++ +QV WF N+
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNK 55
Score = 38.4 bits (89), Expect = 2e-05
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 118 RKARTVFSDHQLTGLEKRFEA---QRYLSTPERVELATALQLSETQ 160
R+ R F+ L + F + Y S + ELA ++ +Q
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQ 47
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 54.8 bits (132), Expect = 1e-11
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 46 RKARTVFSDHQLTGLEKRFEAQR---YLSTPERVELATALQLSETQVKTWFQNR 96
R R F+ + LE F YL T L LS Q+K W NR
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNR 52
Score = 37.8 bits (88), Expect = 3e-05
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 118 RKARTVFSDHQLTGLEKRFEAQR---YLSTPERVELATALQLSETQL 161
R R F+ + LE F YL T L LS Q+
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQI 45
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 54.2 bits (130), Expect = 2e-11
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 49 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
RT + LEK F + ++ + +A L + + ++ WF NR
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNR 49
Score = 43.0 bits (101), Expect = 4e-07
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 121 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQL 161
RT + LEK F + ++ + +A L + + +
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVI 42
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 53.6 bits (128), Expect = 4e-11
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 39 GSKHCRRRKARTVFSDHQLTGLEKRF-EAQRYLSTPERVELATALQLSETQVKTWFQNR 96
GS ++RT S L L+ + Y L+ L L + + +FQN+
Sbjct: 1 GSSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQ 59
Score = 39.7 bits (92), Expect = 9e-06
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 111 GSKHCRRRKARTVFSDHQLTGLEKRF-EAQRYLSTPERVELATALQLSETQL 161
GS ++RT S L L+ + Y L+ L L + +
Sbjct: 1 GSSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTI 52
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 52.4 bits (126), Expect = 9e-11
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 53 SDHQLTGLEKRFEAQ-RYLSTPERVELATALQLSETQVKTWFQNR 96
+ LEK F A ++ L+ L ++ WF+ R
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQR 45
Score = 33.9 bits (78), Expect = 6e-04
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 125 SDHQLTGLEKRFEAQ-RYLSTPERVELATALQLSETQ 160
+ LEK F A ++ L+ L
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRS 37
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 51.5 bits (123), Expect = 3e-10
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 46 RKARTVFSDHQLTGLEKRFEA-QRYLSTPERVELATALQLSETQVKTWFQNR 96
+ ++ Q+ LE F ++ +A L+E Q + WF+ R
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQR 53
Score = 38.0 bits (88), Expect = 3e-05
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 118 RKARTVFSDHQLTGLEKRFEA-QRYLSTPERVELATALQLSETQLF 162
+ ++ Q+ LE F ++ +A L+E Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 49.0 bits (116), Expect = 3e-09
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 21/69 (30%)
Query: 49 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATAL---------------------QLSET 87
R + L + +E Q+ S ER L ++E
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 88 QVKTWFQNR 96
+V WF NR
Sbjct: 61 RVYNWFANR 69
Score = 38.6 bits (89), Expect = 2e-05
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 121 RTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQ 160
R + L + +E Q+ S ER L +E
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECI 40
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 47.3 bits (112), Expect = 2e-08
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 4/62 (6%)
Query: 39 GSKHCRRRKARTVFSDHQLTGLEKRFEAQR----YLSTPERVELATALQLSETQVKTWFQ 94
S ++ RT F+ Q + E + + +K W
Sbjct: 11 SSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMH 70
Query: 95 NR 96
N
Sbjct: 71 NN 72
Score = 29.6 bits (66), Expect = 0.044
Identities = 7/55 (12%), Positives = 13/55 (23%), Gaps = 4/55 (7%)
Query: 111 GSKHCRRRKARTVFSDHQLTGLEKRFEAQR----YLSTPERVELATALQLSETQL 161
S ++ RT F+ Q + E + + L
Sbjct: 11 SSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVL 65
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 46.6 bits (110), Expect = 3e-08
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 44 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
++ K +T QL L+ F L+ E L +L+ ++ WF +
Sbjct: 6 QKFKEKT---AEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEK 55
Score = 31.6 bits (71), Expect = 0.007
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 116 RRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQL 161
++ K +T QL L+ F L+ E L +L+ ++
Sbjct: 6 QKFKEKT---AEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREI 48
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 38.9 bits (90), Expect = 2e-05
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 39 GSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTWFQNR 96
GS ++ + QL L+ F ++ + +L L ++ WF +
Sbjct: 1 GSSGSSGKR----KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDT 54
Score = 27.8 bits (61), Expect = 0.22
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 111 GSKHCRRRKARTVFSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQL 161
GS ++ + QL L+ F ++ + +L L ++
Sbjct: 1 GSSGSSGKR----KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEI 47
>d1ykwa2 d.58.9.1 (A:4-145) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Chlorobium tepidum [TaxId:
1097]}
Length = 142
Score = 25.2 bits (55), Expect = 3.3
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 52 FSDHQLTGLEKRFEAQRYLSTPERVELATALQLSETQVKTW 92
F+ + +E+ YL + +E A A SE W
Sbjct: 7 FASRESLDMEQYLVLDYYLESVGDIETALAHFCSEQSTAQW 47
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 25.5 bits (55), Expect = 3.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 21 TPQGLPFGSLFSTSPHELGS 40
TP G G+L S P +L +
Sbjct: 10 TPIGKHGGALASVRPDDLLA 29
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 268
Score = 25.4 bits (55), Expect = 3.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 21 TPQGLPFGSLFSTSPHELGS 40
T G G+ +T HELG+
Sbjct: 13 TAVGSFNGAFANTPAHELGA 32
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus
subtilis [TaxId: 1423]}
Length = 372
Score = 24.6 bits (53), Expect = 6.8
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 71 STPERVELATALQLSETQVKTWFQNRLP 98
PE + L L + + + P
Sbjct: 344 MLPETF-VQAHLDLGKDFTDVLSKEKHP 370
>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 696
Score = 24.2 bits (51), Expect = 9.8
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 129 LTGLEKRFEA-QRYLSTPERVELATALQLSETQLFYV 164
GL + + A Q Y+ +L L L+ QLF++
Sbjct: 598 NGGLGQAYRAYQNYIKKNGEEKLLPGLDLNHKQLFFL 634
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.388
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 578,461
Number of extensions: 24004
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 71
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)