Query psy1701
Match_columns 270
No_of_seqs 143 out of 1431
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 19:27:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304|consensus 100.0 1.4E-47 3E-52 347.5 19.4 250 11-260 193-449 (449)
2 PTZ00206 amino acid transporte 100.0 1E-35 2.2E-40 278.8 15.6 209 51-261 255-465 (467)
3 PLN03074 auxin influx permease 100.0 1.1E-33 2.4E-38 264.6 17.4 212 50-266 231-457 (473)
4 PF01490 Aa_trans: Transmembra 100.0 4.3E-34 9.2E-39 263.4 3.2 209 49-257 189-408 (409)
5 KOG4303|consensus 100.0 7.3E-34 1.6E-38 246.3 -4.6 251 5-267 259-521 (524)
6 KOG1303|consensus 100.0 3.7E-30 8E-35 236.8 16.4 202 55-262 231-436 (437)
7 KOG1305|consensus 100.0 5.5E-29 1.2E-33 227.8 15.9 206 52-263 194-408 (411)
8 COG0814 SdaC Amino acid permea 99.6 4.3E-15 9.3E-20 137.5 13.2 204 49-256 190-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 98.9 2.2E-08 4.8E-13 92.3 14.2 173 48-227 180-367 (394)
10 TIGR00837 araaP aromatic amino 98.9 1.7E-08 3.7E-13 92.6 13.0 170 50-226 176-360 (381)
11 PRK15132 tyrosine transporter 98.7 2.3E-07 5E-12 85.6 12.5 192 53-251 182-390 (403)
12 PRK10483 tryptophan permease; 98.4 5.9E-06 1.3E-10 76.3 14.0 167 51-225 191-373 (414)
13 PRK09664 tryptophan permease T 98.2 4.5E-05 9.8E-10 70.5 15.4 192 53-251 194-402 (415)
14 PRK13629 threonine/serine tran 98.2 3.1E-05 6.8E-10 71.8 13.3 196 54-254 211-440 (443)
15 TIGR00814 stp serine transport 98.1 2.4E-05 5.3E-10 72.2 10.1 173 51-223 185-377 (397)
16 TIGR03813 put_Glu_GABA_T putat 98.0 0.0012 2.6E-08 62.5 19.3 163 60-225 202-385 (474)
17 PRK10746 putative transport pr 97.8 0.0022 4.8E-08 60.5 17.8 173 51-226 199-389 (461)
18 PRK10249 phenylalanine transpo 97.8 0.0017 3.7E-08 61.2 16.9 170 50-224 207-394 (458)
19 PRK10655 potE putrescine trans 97.8 0.0035 7.6E-08 58.6 18.6 55 52-109 189-244 (438)
20 TIGR03810 arg_ornith_anti argi 97.7 0.0022 4.9E-08 60.5 17.2 168 53-226 196-381 (468)
21 PRK10644 arginine:agmatin anti 97.7 0.0032 6.9E-08 59.0 16.9 56 52-109 191-246 (445)
22 TIGR00909 2A0306 amino acid tr 97.6 0.0017 3.6E-08 60.5 14.5 170 50-226 193-377 (429)
23 PRK10197 gamma-aminobutyrate t 97.6 0.0036 7.7E-08 58.8 16.1 170 51-225 180-368 (446)
24 PRK15049 L-asparagine permease 97.5 0.0077 1.7E-07 57.5 17.0 166 55-225 223-406 (499)
25 TIGR00908 2A0305 ethanolamine 97.5 0.007 1.5E-07 56.6 16.5 52 53-107 192-244 (442)
26 PRK11021 putative transporter; 97.5 0.013 2.7E-07 54.4 17.9 169 50-225 175-362 (410)
27 PRK11387 S-methylmethionine tr 97.5 0.017 3.6E-07 54.7 18.9 55 53-109 207-261 (471)
28 PRK11049 D-alanine/D-serine/gl 97.5 0.0065 1.4E-07 57.4 16.0 171 52-225 211-399 (469)
29 TIGR00913 2A0310 amino acid pe 97.4 0.011 2.4E-07 55.8 17.2 55 51-107 196-250 (478)
30 PRK10836 lysine transporter; P 97.4 0.012 2.7E-07 55.8 16.9 52 56-109 209-260 (489)
31 KOG1287|consensus 97.3 0.0049 1.1E-07 57.8 13.3 172 50-226 202-387 (479)
32 PRK10580 proY putative proline 97.3 0.024 5.1E-07 53.4 17.2 55 52-108 199-253 (457)
33 PRK11357 frlA putative fructos 97.2 0.011 2.4E-07 55.4 14.6 56 51-108 194-249 (445)
34 PRK10238 aromatic amino acid t 97.2 0.013 2.8E-07 55.2 15.1 168 53-225 201-386 (456)
35 TIGR00906 2A0303 cationic amin 97.2 0.0084 1.8E-07 58.0 13.7 168 51-225 230-411 (557)
36 PRK10435 cadB lysine/cadaverin 97.2 0.014 3E-07 54.6 14.5 57 51-110 186-243 (435)
37 PF13520 AA_permease_2: Amino 97.1 0.019 4.1E-07 53.2 15.0 171 50-226 186-376 (426)
38 TIGR00911 2A0308 L-type amino 97.1 0.0078 1.7E-07 57.3 12.6 57 51-109 234-290 (501)
39 TIGR01773 GABAperm gamma-amino 97.1 0.02 4.3E-07 53.8 15.2 54 52-107 201-254 (452)
40 COG0531 PotE Amino acid transp 97.1 0.043 9.2E-07 51.3 16.9 168 52-226 201-390 (466)
41 TIGR00905 2A0302 transporter, 97.0 0.03 6.5E-07 53.0 15.8 55 52-109 199-253 (473)
42 TIGR00910 2A0307_GadC glutamat 97.0 0.053 1.1E-06 51.9 17.1 48 56-106 198-246 (507)
43 TIGR00907 2A0304 amino acid pe 96.9 0.076 1.6E-06 50.3 16.9 50 55-106 220-269 (482)
44 TIGR00930 2a30 K-Cl cotranspor 96.8 0.08 1.7E-06 54.4 17.6 52 54-107 282-333 (953)
45 PRK15238 inner membrane transp 96.7 0.16 3.5E-06 48.3 17.4 53 53-107 212-264 (496)
46 TIGR03428 ureacarb_perm permea 96.2 0.5 1.1E-05 44.7 17.8 57 56-114 217-273 (475)
47 COG1113 AnsP Gamma-aminobutyra 96.2 0.048 1E-06 50.7 10.1 213 9-225 151-389 (462)
48 PF00324 AA_permease: Amino ac 95.7 0.037 8.1E-07 52.3 7.8 62 51-114 199-260 (478)
49 KOG1286|consensus 94.9 0.6 1.3E-05 45.2 13.1 169 51-224 231-422 (554)
50 TIGR00912 2A0309 spore germina 94.3 0.65 1.4E-05 42.1 11.3 164 50-225 176-354 (359)
51 COG0833 LysP Amino acid transp 93.2 8 0.00017 37.1 16.4 213 8-224 183-427 (541)
52 TIGR00796 livcs branched-chain 87.9 10 0.00022 35.0 11.8 25 194-222 323-347 (378)
53 COG1914 MntH Mn2+ and Fe2+ tra 87.8 24 0.00051 33.0 14.5 74 170-243 323-398 (416)
54 PF03845 Spore_permease: Spore 78.5 7.9 0.00017 34.5 7.0 111 49-162 172-293 (320)
55 KOG1289|consensus 72.9 94 0.002 30.1 14.0 56 62-119 262-317 (550)
56 COG0733 Na+-dependent transpor 63.8 1.3E+02 0.0029 28.3 13.1 39 48-86 210-249 (439)
57 TIGR00813 sss transporter, SSS 63.6 93 0.002 28.6 10.7 30 196-226 365-394 (407)
58 COG1457 CodB Purine-cytosine p 63.5 1.4E+02 0.0029 28.3 15.9 150 48-207 189-344 (442)
59 PRK00701 manganese transport p 58.3 1.7E+02 0.0036 27.6 13.7 47 170-220 345-393 (439)
60 TIGR00800 ncs1 NCS1 nucleoside 58.0 98 0.0021 29.0 9.9 49 66-117 222-274 (442)
61 PRK10484 putative transporter; 57.4 1.8E+02 0.004 27.8 12.4 13 103-115 295-307 (523)
62 TIGR02119 panF sodium/pantothe 56.5 1.8E+02 0.0038 27.4 13.1 33 77-112 261-293 (471)
63 KOG2082|consensus 56.0 2.4E+02 0.0052 28.8 13.7 199 52-261 410-635 (1075)
64 TIGR02121 Na_Pro_sym sodium/pr 55.4 1.9E+02 0.0041 27.4 13.4 14 102-115 281-294 (487)
65 PRK12488 acetate permease; Pro 55.2 2.1E+02 0.0045 27.8 14.2 46 179-226 410-455 (549)
66 KOG4812|consensus 51.2 23 0.00051 30.3 4.0 84 179-266 160-256 (262)
67 PF05805 L6_membrane: L6 membr 48.6 53 0.0011 27.3 5.6 68 195-262 43-117 (195)
68 PRK11375 allantoin permease; P 46.4 2.7E+02 0.0058 26.5 12.1 18 195-212 373-390 (484)
69 PRK09442 panF sodium/panthothe 44.6 2.8E+02 0.006 26.2 16.1 30 78-110 263-292 (483)
70 PRK11383 hypothetical protein; 43.5 1.6E+02 0.0035 23.1 7.7 85 174-258 13-99 (145)
71 PRK15419 proline:sodium sympor 42.0 3.1E+02 0.0068 26.1 15.6 17 99-115 282-298 (502)
72 TIGR00945 tatC Twin arginine t 39.3 1.5E+02 0.0032 24.9 7.1 34 128-161 55-88 (215)
73 PF00474 SSF: Sodium:solute sy 38.0 86 0.0019 28.7 6.0 42 183-226 352-393 (406)
74 PF07954 DUF1689: Protein of u 37.4 1.7E+02 0.0037 23.3 6.7 61 200-262 33-93 (152)
75 TIGR02358 thia_cytX probable h 37.0 3.3E+02 0.0072 24.9 13.4 42 71-115 192-233 (386)
76 TIGR03648 Na_symport_lg probab 35.1 4.2E+02 0.0092 25.6 14.5 39 185-226 427-465 (552)
77 TIGR02711 symport_actP cation/ 32.4 4.7E+02 0.01 25.3 15.4 45 180-226 411-455 (549)
78 PF01102 Glycophorin_A: Glycop 29.4 1E+02 0.0022 23.6 4.1 28 239-266 66-93 (122)
79 PRK13183 psbN photosystem II r 28.9 53 0.0012 20.5 2.0 27 90-116 7-33 (46)
80 PF02468 PsbN: Photosystem II 28.4 61 0.0013 20.0 2.2 26 91-116 5-30 (43)
81 TIGR01912 TatC-Arch Twin argin 27.2 2E+02 0.0044 24.6 6.1 34 128-161 63-96 (237)
82 PF10953 DUF2754: Protein of u 27.0 44 0.00094 22.0 1.5 37 78-114 1-37 (70)
83 PHA03048 IMV membrane protein; 26.2 2.5E+02 0.0055 20.2 5.3 63 53-120 12-74 (93)
84 CHL00020 psbN photosystem II p 26.2 51 0.0011 20.3 1.6 27 90-116 4-30 (43)
85 PF04835 Pox_A9: A9 protein co 24.8 1.8E+02 0.0039 18.8 3.9 28 91-118 25-52 (54)
86 KOG1288|consensus 23.6 7.9E+02 0.017 25.0 10.7 54 53-108 295-348 (945)
87 PRK15433 branched-chain amino 23.4 5.5E+02 0.012 24.3 8.6 24 195-222 333-356 (439)
88 PHA02680 ORF090 IMV phosphoryl 22.1 3.1E+02 0.0066 19.7 5.5 59 56-117 15-73 (91)
89 COG3476 Tryptophan-rich sensor 21.8 2.6E+02 0.0057 22.5 5.3 48 64-116 23-71 (161)
90 PF12794 MscS_TM: Mechanosensi 21.0 6.2E+02 0.013 22.8 12.5 42 84-125 43-84 (340)
91 PRK11026 ftsX cell division AB 21.0 6E+02 0.013 22.6 8.7 26 239-264 281-306 (309)
92 PRK00523 hypothetical protein; 20.1 2.9E+02 0.0063 19.1 4.5 23 246-268 16-38 (72)
No 1
>KOG1304|consensus
Probab=100.00 E-value=1.4e-47 Score=347.55 Aligned_cols=250 Identities=42% Similarity=0.704 Sum_probs=233.9
Q ss_pred HHHHhhcchh------hhhhH-hhhheeeeeecccCCCCCCCCCCCCCCchhHHHHHHHHHhhcccccccccccccCCCC
Q psy1701 11 EFWIDARGFR------DNHSG-HFMYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGH 83 (270)
Q Consensus 11 ~~w~~~~~~~------~~~~~-~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~ 83 (270)
-.|+|+.+.+ +|... +++.++++|.+.+.++.++.+...++++++.++|+.+|||+|+++++|++|+||+|++
T Consensus 193 l~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~ 272 (449)
T KOG1304|consen 193 LNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQK 272 (449)
T ss_pred HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhh
Confidence 4577776655 33333 5778899999999999999999989999999999999999999999999999999999
Q ss_pred CCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh
Q psy1701 84 FLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH 163 (270)
Q Consensus 84 ~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~ 163 (270)
|+...++++.++.++.++|..+|++||++|||++++.|++|+|++++.+.+|+++++.+++|||+|+||+.+++|+.+.+
T Consensus 273 F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~ 352 (449)
T KOG1304|consen 273 FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRK 352 (449)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHH
Confidence 99777799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCCCCCcchhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHH
Q psy1701 164 RVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIIL 243 (270)
Q Consensus 164 ~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~i~~ 243 (270)
+.+++++++..+.+|..++++++++|..+||++++++++||++++.+++++|+++|++.++++.++..+|+.++|.++++
T Consensus 353 k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~ 432 (449)
T KOG1304|consen 353 KFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIV 432 (449)
T ss_pred hcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHH
Confidence 88877788999999999999999999999999999999999999999999999999999999877778899999999999
Q ss_pred HHHHHhHHHHHHHHHHH
Q psy1701 244 ISLGALISGTYSSIEEI 260 (270)
Q Consensus 244 ~Gv~~~v~gt~~~i~~l 260 (270)
+|+++++.|||.+++++
T Consensus 433 ~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 433 FGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHhhhhhcC
Confidence 99999999999999864
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1e-35 Score=278.75 Aligned_cols=209 Identities=17% Similarity=0.182 Sum_probs=179.6
Q ss_pred CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccC-CCc-
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNL-PKD- 128 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~-~~~- 128 (270)
..+.+.++|+++|||.||.+.+|+++|||||+. +|+.+++..++.++.++|..+|++||++||+++++++++|+ |.+
T Consensus 255 ~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~-~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~ 333 (467)
T PTZ00206 255 GNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSV-GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNE 333 (467)
T ss_pred chHHHhhhhHHHhhhhhhhhhHHHHHhhcccch-hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCC
Confidence 346889999999999999999999999999885 56667899999999999999999999999999999999999 554
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHHH
Q psy1701 129 PFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFS 208 (270)
Q Consensus 129 ~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~ 208 (270)
+...++++++.+.++++||++.+|+|+.+++.+..+. ++.+.+++...+..+...+.++|+.+|+++.+++++||++++
T Consensus 334 ~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~ 412 (467)
T PTZ00206 334 PAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDA-RKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGG 412 (467)
T ss_pred chhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCc-ccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHH
Confidence 8888999999999999999999999999988874322 234456676777777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1701 209 MLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEII 261 (270)
Q Consensus 209 ~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~i~~~Gv~~~v~gt~~~i~~li 261 (270)
.++|++|+++|++....+.++..+++++.+++++++|++..+.|||+++.+.+
T Consensus 413 ~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 413 LLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 99999999999984311111123455688999999999999999999998875
No 3
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.1e-33 Score=264.63 Aligned_cols=212 Identities=17% Similarity=0.214 Sum_probs=181.5
Q ss_pred CCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccc--cccccCCC
Q psy1701 50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKG--SITLNLPK 127 (270)
Q Consensus 50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~--~il~n~~~ 127 (270)
++..++.++++++|||++|+.+||+++|||||++|++ ++..+...+.++|..+|+.||++|||++++ +.+.|+|+
T Consensus 231 ~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~ 307 (473)
T PLN03074 231 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPR 307 (473)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCC
Confidence 3445666777899999999999999999999999988 778889999999999999999999999764 56777987
Q ss_pred chHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHH
Q psy1701 128 DPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICF 207 (270)
Q Consensus 128 ~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~ 207 (270)
+....+++++++++++.+||+++.|..+..|+.+..+ ++++...|..+|..+++.++++|+.+|+|+++++++||+++
T Consensus 308 ~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~ 385 (473)
T PLN03074 308 SGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLV 385 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 7667899999999999999999999988877765432 34556789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC--CC--------CCc--hhhHHHHHHHHH-HHHHhHHHHHHHHHHHHHHhCC
Q psy1701 208 SMLGLFCPAVIDYVTFYDPN--KS--------WYR--PRTIKNFIIILI-SLGALISGTYSSIEEIIAFYAI 266 (270)
Q Consensus 208 ~~l~filP~l~~l~~~~~~~--~~--------~~~--~~~~~~~~i~~~-Gv~~~v~gt~~~i~~li~~~~~ 266 (270)
+.+++++|+++|++.++++. ++ ..+ |+.++|++++++ |+++++.|+|.+++++++++++
T Consensus 386 s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~ 457 (473)
T PLN03074 386 SFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDT 457 (473)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhh
Confidence 99999999999999776531 11 123 346899999975 6666799999999999999987
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=4.3e-34 Score=263.39 Aligned_cols=209 Identities=32% Similarity=0.517 Sum_probs=187.6
Q ss_pred CCCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccCCCc
Q psy1701 49 APFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKD 128 (270)
Q Consensus 49 ~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~~~~ 128 (270)
.++.+++.++|+++|||.||++++|+++|||+|++++|..++...++.+++++|..+|..||++||+++++|+++|+|++
T Consensus 189 ~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~ 268 (409)
T PF01490_consen 189 ISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPND 268 (409)
T ss_pred chhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCc
Confidence 45678999999999999999999999999999999886677999999999999999999999999999999999999988
Q ss_pred -hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhh--------CCCCCcchhHHHHHHHHHHHHHHHHHhcCCchhhH
Q psy1701 129 -PFSESIKILVALSILFTYGLQFGVPSEIVWERIKHR--------VPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPII 199 (270)
Q Consensus 129 -~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~--------~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~ 199 (270)
+...++++++.++++.+||++.+|+++.+++.+.++ .+++.++++|..+|+.++..++++|+.+|++++++
T Consensus 269 ~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~ 348 (409)
T PF01490_consen 269 DVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDII 348 (409)
T ss_pred ccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhh
Confidence 799999999999999999999999999999998653 12234567899999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCchh--hHHHHHHHHHHHHHhHHHHHHHH
Q psy1701 200 SLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPR--TIKNFIIILISLGALISGTYSSI 257 (270)
Q Consensus 200 ~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~--~~~~~~i~~~Gv~~~v~gt~~~i 257 (270)
+++|+++++.++|++|+++|++.+++++.+..++. ...++.++++|+++++.|+|+++
T Consensus 349 ~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 349 SLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred cccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 99999999999999999999999887643332222 25688999999999999999876
No 5
>KOG4303|consensus
Probab=99.97 E-value=7.3e-34 Score=246.29 Aligned_cols=251 Identities=22% Similarity=0.305 Sum_probs=221.7
Q ss_pred ccchhhHHHHhhcchhhhhhHhhhheeeeeecccCCCC--CCCCCCCCCCchhHHHHHHHHHhhcccccccccccccCCC
Q psy1701 5 TSVNFQEFWIDARGFRDNHSGHFMYLLCTYAVTDLPDT--STRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPG 82 (270)
Q Consensus 5 ~~~~~~~~w~~~~~~~~~~~~~~~~~i~~y~~~~~~~~--~~~~~~~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~ 82 (270)
|-|+-.++|....++.-|+ +++.|+.....++ ++....-|..+++.++|+++|+|..|.-.|+++.+|++|+
T Consensus 259 k~VS~lSf~ct~sH~viN~------i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps 332 (524)
T KOG4303|consen 259 KIVSRLSFFCTISHLVINL------IMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPS 332 (524)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChh
Confidence 4577788999988888777 4556777766654 4444445677899999999999999999999999999999
Q ss_pred CCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHh
Q psy1701 83 HFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIK 162 (270)
Q Consensus 83 ~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~ 162 (270)
+|.. .+.|+-+...++-..+|.+||++||++++..|++|+|+..+...+++.+.+..++|||+.+|.+.+.+|+.++
T Consensus 333 ~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF 409 (524)
T KOG4303|consen 333 QFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLF 409 (524)
T ss_pred Hhee---eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhh
Confidence 9987 7899999999999999999999999999999999999988999999999999999999999999999999987
Q ss_pred hhCCCC----------CcchhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q psy1701 163 HRVPIP----------RHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYR 232 (270)
Q Consensus 163 ~~~~~~----------~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~ 232 (270)
...++. +-+-+.+.+|++++..+.++|+.+|++..+++++|+++++.++|+.|++||+++.++. ...
T Consensus 410 ~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~---L~~ 486 (524)
T KOG4303|consen 410 LGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT---LNN 486 (524)
T ss_pred cCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh---hhh
Confidence 655431 2234567899999999999999999999999999999999999999999999998764 334
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Q psy1701 233 PRTIKNFIIILISLGALISGTYSSIEEIIAFYAIN 267 (270)
Q Consensus 233 ~~~~~~~~i~~~Gv~~~v~gt~~~i~~li~~~~~~ 267 (270)
.++.++..++++|....+.|.|.+..+++++++.+
T Consensus 487 ~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~ 521 (524)
T KOG4303|consen 487 FEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSA 521 (524)
T ss_pred HHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhcc
Confidence 56889999999999999999999999999998865
No 6
>KOG1303|consensus
Probab=99.97 E-value=3.7e-30 Score=236.77 Aligned_cols=202 Identities=23% Similarity=0.331 Sum_probs=180.1
Q ss_pred hHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccCC-CchHHHH
Q psy1701 55 PLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLP-KDPFSES 133 (270)
Q Consensus 55 ~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~~-~~~~~~~ 133 (270)
++++|++.|+|++|+..|+|+++||+|++|+| ++..+..+++.+|+.+++.||++|||+++|+++.|++ ..++...
T Consensus 231 f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~---~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ 307 (437)
T KOG1303|consen 231 FTALGIIAFAYGGHAVLPEIQHTMKSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIAL 307 (437)
T ss_pred hhhhhheeeeecCCeeeeehHhhcCCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHH
Confidence 79999999999999999999999999999887 8999999999999999999999999999999999997 5599999
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCC--CCcchhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHHHHHH
Q psy1701 134 IKILVALSILFTYGLQFGVPSEIVWERIKHRVPI--PRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLG 211 (270)
Q Consensus 134 ~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~--~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l~ 211 (270)
+++++.++++.++++...|..+.+|+....+.++ ++..+.|.+.|..++..++++|+.+|+|+++++++||+...+++
T Consensus 308 ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t 387 (437)
T KOG1303|consen 308 ANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLT 387 (437)
T ss_pred HHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988655441 24567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhHHHHHH-HHHHHHHhHHHHHHHHHHHHH
Q psy1701 212 LFCPAVIDYVTFYDPNKSWYRPRTIKNFII-ILISLGALISGTYSSIEEIIA 262 (270)
Q Consensus 212 filP~l~~l~~~~~~~~~~~~~~~~~~~~i-~~~Gv~~~v~gt~~~i~~li~ 262 (270)
+++|+++|+..++.++. ..+...++.+ +++|++.++.+...++.+++.
T Consensus 388 ~ilP~~~yl~~~k~~~~---s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 388 FILPCLMYLLIKKPKRF---SPKWLLNWVIILVVGLLLSVLAAVGGVRSLII 436 (437)
T ss_pred HHHHHHHHHHhhhhhhh---hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999765422 2234455555 788888888888888887765
No 7
>KOG1305|consensus
Probab=99.96 E-value=5.5e-29 Score=227.81 Aligned_cols=206 Identities=21% Similarity=0.288 Sum_probs=185.2
Q ss_pred CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccCCCc--h
Q psy1701 52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKD--P 129 (270)
Q Consensus 52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~~~~--~ 129 (270)
.+++.++++++|||.||.|+.|+++|||+|++ +++.++...+...+.++|..+|.+||++|||++++|++.+++++ .
T Consensus 194 ~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~-~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~ 272 (411)
T KOG1305|consen 194 SSLFYALPIFVFAFTCHSNVFPIYNELKDRSV-KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNN 272 (411)
T ss_pred hhhhhhhhhhheeeeccccceeeeeeeeCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccch
Confidence 57999999999999999999999999999996 77788999999999999999999999999999999999999876 2
Q ss_pred -----HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCC--CCcchhHHHHHHHHHHHHHHHHHhcCCchhhHHHh
Q psy1701 130 -----FSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPI--PRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLV 202 (270)
Q Consensus 130 -----~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~--~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lv 202 (270)
....+|..+..+.+.++|++.+|+|..+.+.+.++.++ +.++.++.+++..++..+.+.|+.+|+++++++++
T Consensus 273 ~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~v 352 (411)
T KOG1305|consen 273 LLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFV 352 (411)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 24789999999999999999999999988887665543 25567889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1701 203 GAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIAF 263 (270)
Q Consensus 203 Gs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~i~~~Gv~~~v~gt~~~i~~li~~ 263 (270)
||+++..++|++|+++|++..++ +.+++...+...++|+...++|+...+.++..+
T Consensus 353 GAT~~~~i~FI~P~~~yl~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 353 GATSSTSISFILPALYYLKASKK-----KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred hhhhhhhhHHHHHHHhhheeecc-----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998865 234567778889999999999999988888764
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.62 E-value=4.3e-15 Score=137.50 Aligned_cols=204 Identities=15% Similarity=0.121 Sum_probs=148.5
Q ss_pred CCCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccCCCc
Q psy1701 49 APFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKD 128 (270)
Q Consensus 49 ~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~~~~ 128 (270)
.++.++..++|+++|||+||+|++++.+|||++++ ++.+++...+..+..++|..+++.+|..+|+++.++++++.+++
T Consensus 190 ~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~-~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~ 268 (415)
T COG0814 190 SFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK-KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQN 268 (415)
T ss_pred hhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCch
Confidence 45778889999999999999999999999998886 34556999999999999999999999999999999999999887
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhhHHHHHH--------------HHHhh-h-CCCCCcchh--HHHHHHHHHHHHHHHHH
Q psy1701 129 PFSESIKILVALSILFTYGLQFGVPSEIVW--------------ERIKH-R-VPIPRHNMG--YYIMRGLMIIGTVLVAA 190 (270)
Q Consensus 129 ~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~--------------~~l~~-~-~~~~~~~~~--~~~~r~~~~~~~~~lAi 190 (270)
......+.....+...++|.+.++.+.+.- +.+.+ + .+.++..+. .....+..+......+.
T Consensus 269 ~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~ 348 (415)
T COG0814 269 ISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAI 348 (415)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 444444444444455666666666654422 22221 1 111222222 33445555566667788
Q ss_pred hcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHhHHHHHHH
Q psy1701 191 IIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSS 256 (270)
Q Consensus 191 ~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~i~~~Gv~~~v~gt~~~ 256 (270)
..|..+.+++.+|+.....+.++.|...+.+....+. .+..+..+++++++|+..+..-.+..
T Consensus 349 ~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~---~~g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 349 ALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKV---YGGNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceee---cCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988866654331 11112467888888888877766644
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.93 E-value=2.2e-08 Score=92.27 Aligned_cols=173 Identities=13% Similarity=0.084 Sum_probs=124.5
Q ss_pred CCCCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHh--hHHH---------HhhcCc
Q psy1701 48 VAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVG--YCGY---------LKYGED 116 (270)
Q Consensus 48 ~~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g--~~gY---------~~fG~~ 116 (270)
..++.....++|+.++||+.|+.+|++.+.+++.. +|.++++..+..+..++|+..- +.|- ..-|++
T Consensus 180 ~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~--~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~ 257 (394)
T PF03222_consen 180 PSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP--KKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGN 257 (394)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Confidence 45778888999999999999999999999988443 3344588888888888888653 2331 111222
Q ss_pred ccc--cccccCCCc-hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcC
Q psy1701 117 TKG--SITLNLPKD-PFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIP 193 (270)
Q Consensus 117 ~~~--~il~n~~~~-~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip 193 (270)
+.+ ..+.+..++ .......+.-.+.+..||-=...-.+|.+.+.++. +++...|............++|...|
T Consensus 258 ~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~----~~~~~~r~~~~~ltf~ppl~~a~~~p 333 (394)
T PF03222_consen 258 VSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL----KNNSSGRLKTWLLTFLPPLIFALLFP 333 (394)
T ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CccccchHHHHHHHHHhHHHHHHHCc
Confidence 211 223333333 66777788888888888877777788888776643 22223444455666777888899888
Q ss_pred C-chhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCC
Q psy1701 194 N-LGPIISLVGAICFSMLGLFCPAVIDYVTFYDPN 227 (270)
Q Consensus 194 ~-~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~ 227 (270)
+ +-..+++.| ...+.+..++|+++.++.+++++
T Consensus 334 ~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 334 NGFLIALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 8 888999999 88999999999999999987654
No 10
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.92 E-value=1.7e-08 Score=92.56 Aligned_cols=170 Identities=9% Similarity=0.040 Sum_probs=124.4
Q ss_pred CCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-cc---------c
Q psy1701 50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-TK---------G 119 (270)
Q Consensus 50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-~~---------~ 119 (270)
++.++..+++...++|++|.+++++.++++|++ |+.+++...+..++.++|+.+........+.+ .+ +
T Consensus 176 ~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~--k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~ 253 (381)
T TIGR00837 176 YWPYILSALPVCLTSFGFHGNVPSLYKYYDGNV--KKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLD 253 (381)
T ss_pred cHHHHHHHHHHHHHHHHcccccHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChH
Confidence 455678889999999999999999999998663 44455899999999999998865544444322 11 1
Q ss_pred c---cccc-CCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCCc
Q psy1701 120 S---ITLN-LPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNL 195 (270)
Q Consensus 120 ~---il~n-~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~ 195 (270)
+ ...+ .++.+...++.+.-.+.+..|+.-.....+|.+.+.+.+. ++++ +|.....+......++|...|+.
T Consensus 254 ~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~-~~~~---~~~~~~~~~~~~pl~~a~~~p~~ 329 (381)
T TIGR00837 254 GLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFD-DSKK---GRFKTGLLTFLPPLVFALFYPEG 329 (381)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccC---CCchhhhhhHHhHHHHHHHhhHH
Confidence 1 1111 2223566777778888888888887778888866666542 2222 24556677778888999999997
Q ss_pred h-hhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 196 G-PIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 196 ~-~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
. ..++..| +..+.+.+++|++++++.|+++
T Consensus 330 ~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 330 FLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 7 8999999 8889999999999999987653
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.69 E-value=2.3e-07 Score=85.60 Aligned_cols=192 Identities=11% Similarity=0.057 Sum_probs=132.8
Q ss_pred chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-----ccc-----ccc
Q psy1701 53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-----TKG-----SIT 122 (270)
Q Consensus 53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-----~~~-----~il 122 (270)
-...++|++.+||+.|+++|++.+.+++.. +|.+++...+..+..++|+..=......-+.+ .++ +++
T Consensus 182 ~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~--~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l 259 (403)
T PRK15132 182 LALSAIPVIFTSFGFHGSVPSIVSYMGGNI--RKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL 259 (403)
T ss_pred HHHHHHHHHHHHhhCCcccHHHHHHhCcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence 378999999999999999999999987443 44456888888888888886544444333222 111 222
Q ss_pred ccCC---Cc-hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCC-chh
Q psy1701 123 LNLP---KD-PFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPN-LGP 197 (270)
Q Consensus 123 ~n~~---~~-~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~-~~~ 197 (270)
..+. ++ +....+.+.-.+.+..||-=...-..|.+.+.++++.+ ...|..........+.++|..-|+ +..
T Consensus 260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~----~~~r~~~~~l~flppli~a~~~P~~F~~ 335 (403)
T PRK15132 260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT----VGGRLQTGLITFLPPLAFALFYPRGFVM 335 (403)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc----ccCCchhehhhHHHHHHHHHHhHHHHHH
Confidence 2222 22 66677777777888888877777778888777644221 223566677888888999999998 788
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCc--hhhHHHHHHHHHHHHHhHH
Q psy1701 198 IISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYR--PRTIKNFIIILISLGALIS 251 (270)
Q Consensus 198 v~~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~--~~~~~~~~i~~~Gv~~~v~ 251 (270)
.++..|. ..+.+.+++|+++-++.+++++.+..| -.+..+++.+.+|++..+.
T Consensus 336 al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 336 ALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI 390 (403)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence 8888876 579999999999999988653111111 1345566677777665544
No 12
>PRK10483 tryptophan permease; Provisional
Probab=98.42 E-value=5.9e-06 Score=76.31 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=117.9
Q ss_pred CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHh-----------hcCcccc
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLK-----------YGEDTKG 119 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~-----------fG~~~~~ 119 (270)
+.....+++++++||+.|+++|++.+.+++.. +|.++++..+..+..++|+..=...-.. -|++++
T Consensus 191 ~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~--~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~- 267 (414)
T PRK10483 191 APYLLMTLPFCLASFGYHGNVPSLMKYYGKDP--KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID- 267 (414)
T ss_pred HHHHHHHHHHHHhhccCCCcchHHHHHhCcCH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH-
Confidence 34577999999999999999999999887433 2445689999999999998732222211 222221
Q ss_pred cccccC---CCc-hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCC-
Q psy1701 120 SITLNL---PKD-PFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPN- 194 (270)
Q Consensus 120 ~il~n~---~~~-~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~- 194 (270)
..+..+ .++ .......+.-.+.+..||-=...-..|.+.+.++.+. +...|...-........++|...|+
T Consensus 268 ~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~----~~~~r~~~~~ltflPPl~~al~~P~~ 343 (414)
T PRK10483 268 VLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDD----SAMGRFKTALLTFLPPVVGGLLFPNG 343 (414)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----ccccceeeehhhHhhHHHHHHHhHHH
Confidence 111112 222 5566777777788888887776777888777665322 1223444555677888999999999
Q ss_pred chhhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701 195 LGPIISLVGAICFSMLGLFCPAVIDYVTFYD 225 (270)
Q Consensus 195 ~~~v~~lvGs~~~~~l~filP~l~~l~~~~~ 225 (270)
|-.-++.-|.. ...+.-++|+++-++.|++
T Consensus 344 Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 344 FLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 88899999876 6788889999999999865
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.25 E-value=4.5e-05 Score=70.51 Aligned_cols=192 Identities=11% Similarity=0.061 Sum_probs=124.3
Q ss_pred chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHh--hHH---------HHhhcCcccccc
Q psy1701 53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVG--YCG---------YLKYGEDTKGSI 121 (270)
Q Consensus 53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g--~~g---------Y~~fG~~~~~~i 121 (270)
....++|++.+||+.|+++|++.+.+++.. ++.++.+.....+..++|+.-= ..| -..-|+++++.+
T Consensus 194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d~--~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~ 271 (415)
T PRK09664 194 YIFMALPVCLASFGFHGNIPSLIICYGKRK--DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLV 271 (415)
T ss_pred HHHHHHHHHHHhhhCCCcchHHHHHhCccH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHH
Confidence 377799999999999999999999987443 2223466777777777875331 122 112233332211
Q ss_pred ---cccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCC-chh
Q psy1701 122 ---TLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPN-LGP 197 (270)
Q Consensus 122 ---l~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~-~~~ 197 (270)
..+.+..+......+...+.+..||-=...-..|.+.+.++.+. +...|...-........++|...|+ |-.
T Consensus 272 ~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~----~~~~r~~~~~ltflPPl~~al~~P~gFl~ 347 (415)
T PRK09664 272 KSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDN----SHGGRFKTVLLTFLPPALLYLIFPNGFIY 347 (415)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----ccccceeeehhhHhhhHHHHHHhhHHHHH
Confidence 12222236667777777888888887666677787777664322 1223444555677888999999999 888
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCc--hhhHHHHHHHHHHHHHhHH
Q psy1701 198 IISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYR--PRTIKNFIIILISLGALIS 251 (270)
Q Consensus 198 v~~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~--~~~~~~~~i~~~Gv~~~v~ 251 (270)
-++.-|.. .+.+.-++|+++-++.|++...+..| -.+..-.+.+.+|++..+.
T Consensus 348 AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~ 402 (415)
T PRK09664 348 GIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILC 402 (415)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHH
Confidence 99999886 67888899999999999652211111 1233444555556554443
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.20 E-value=3.1e-05 Score=71.83 Aligned_cols=196 Identities=14% Similarity=0.062 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHhhcccccccccccccCC-C-----C--CCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcc-----ccc
Q psy1701 54 FPLFFSTVLFAMEGIGTVLPIENSMKKP-G-----H--FLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDT-----KGS 120 (270)
Q Consensus 54 ~~~~~gi~~faf~~~~~~~~i~~~m~~p-~-----~--~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~-----~~~ 120 (270)
...++|+++|||+.|+.+++....+|+. + + .+|.++++..+..+..++|+..-+..-..-+++. ++|
T Consensus 211 l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn 290 (443)
T PRK13629 211 VWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQN 290 (443)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 6788899999999999999999885432 1 2 3566678889988888888877665555544321 112
Q ss_pred c--c----ccCCC---------chHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh---hCCCC--CcchhHHHHHHH
Q psy1701 121 I--T----LNLPK---------DPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH---RVPIP--RHNMGYYIMRGL 180 (270)
Q Consensus 121 i--l----~n~~~---------~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~---~~~~~--~~~~~~~~~r~~ 180 (270)
+ + +.+++ ........+...+.+..||-=...-.+|.+...+.+ +.+++ +.+..+....++
T Consensus 291 ~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (443)
T PRK13629 291 IPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIF 370 (443)
T ss_pred CcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHH
Confidence 2 1 11232 123445556666677788777777888888877732 22222 233446677788
Q ss_pred HHHHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCchh-hHHHHHHHHHHHHHhHHHHH
Q psy1701 181 MIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPR-TIKNFIIILISLGALISGTY 254 (270)
Q Consensus 181 ~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~-~~~~~~i~~~Gv~~~v~gt~ 254 (270)
+...++.+|+.=|++=.+++-+|+--...+.|++|...-+|.-.-+ +++ +..|+++.+.|++....-.|
T Consensus 371 ~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~-----~yr~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 371 IMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLA-----KYRGRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred HHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHH-----HhCCCchhHHHHHHHHHHHHHHHH
Confidence 8889999999999999999977777779999999998877654221 111 23478888888776554444
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.08 E-value=2.4e-05 Score=72.24 Aligned_cols=173 Identities=12% Similarity=0.044 Sum_probs=120.1
Q ss_pred CCchhHHHHHHHHHhhcccccccccccc----cCCC-CCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcc-----ccc
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSM----KKPG-HFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDT-----KGS 120 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m----~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~-----~~~ 120 (270)
+.+...+.+..++||.+|+++++...+. ++|+ +.+|.+++...+..+..++|+..-...-...+.+. ++|
T Consensus 185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~n 264 (397)
T TIGR00814 185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQN 264 (397)
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcC
Confidence 4568899999999999999999998444 3232 12444568888888888888877665555554331 112
Q ss_pred c--cc----cCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhh-CC-C--CCcchhHHHHHHHHHHHHHHHHH
Q psy1701 121 I--TL----NLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHR-VP-I--PRHNMGYYIMRGLMIIGTVLVAA 190 (270)
Q Consensus 121 i--l~----n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~-~~-~--~~~~~~~~~~r~~~~~~~~~lAi 190 (270)
+ +. ..+.........+.-.+.+..||--...-.+|.+.+.+.+. .+ + .+++..+.....+....++.+|.
T Consensus 265 is~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 344 (397)
T TIGR00814 265 ISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAY 344 (397)
T ss_pred cHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 12222555666667777888888888888899888876321 11 1 12334456777788888999999
Q ss_pred hcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy1701 191 IIPNLGPIISLVGAICFSMLGLFCPAVIDYVTF 223 (270)
Q Consensus 191 ~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~ 223 (270)
.=|++=.+++-+|+--.+.+.|++|...-.|.-
T Consensus 345 ~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~ 377 (397)
T TIGR00814 345 INPSILSFIEALGGPIIAMILFLMPMYAIYKVP 377 (397)
T ss_pred hCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH
Confidence 999999999966666678999999998877653
No 16
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.96 E-value=0.0012 Score=62.48 Aligned_cols=163 Identities=7% Similarity=-0.003 Sum_probs=83.3
Q ss_pred HHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-cc--ccc-------cccCCCch
Q psy1701 60 TVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-TK--GSI-------TLNLPKDP 129 (270)
Q Consensus 60 i~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-~~--~~i-------l~n~~~~~ 129 (270)
...|+|.|--.....-+|+|||+| ..++++..+...+.++|......-...-+++ .. ++. .......+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r--~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDK--NYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSW 279 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCccc--chhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchH
Confidence 457899999999888999999984 2334889999999999987665433333322 11 111 01111112
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH--------hhhCCCCCcchhHHHHHHHH-HHHHHHHHHhcCCchhhHH
Q psy1701 130 FSESIKILVALSILFTYGLQFGVPSEIVWERI--------KHRVPIPRHNMGYYIMRGLM-IIGTVLVAAIIPNLGPIIS 200 (270)
Q Consensus 130 ~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l--------~~~~~~~~~~~~~~~~r~~~-~~~~~~lAi~ip~~~~v~~ 200 (270)
...+..+...++.+.+.--.+....+.+...- ..+.+ |++.+.+-..-... ..+..++....|+.++.++
T Consensus 280 ~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~ 358 (474)
T TIGR03813 280 LGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQ 358 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 23333333333333332222222223332221 11222 23333332222222 2222333445677666666
Q ss_pred HhhhhHH--HHHHHHHHHHHHHHHhcC
Q psy1701 201 LVGAICF--SMLGLFCPAVIDYVTFYD 225 (270)
Q Consensus 201 lvGs~~~--~~l~filP~l~~l~~~~~ 225 (270)
.+.+.++ ..+.|+++.+..++++++
T Consensus 359 ~l~~~~~~~~~i~y~~~~~a~i~lr~~ 385 (474)
T TIGR03813 359 ILSQLTVILYLVMYLLMFASAIYLRYS 385 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5554433 456788888887777654
No 17
>PRK10746 putative transport protein YifK; Provisional
Probab=97.78 E-value=0.0022 Score=60.50 Aligned_cols=173 Identities=12% Similarity=0.068 Sum_probs=97.1
Q ss_pred CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcC-ccc---ccc---cc
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGE-DTK---GSI---TL 123 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~-~~~---~~i---l~ 123 (270)
+.++..++....|+|.|--.+...-.|+|||+| ..+++...+.....++|.......-..... +.+ ++. ..
T Consensus 199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k--~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~ 276 (461)
T PRK10746 199 WKGFLTALCIVVASYQGVELIGITAGEAKNPQV--TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFA 276 (461)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhh--HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHH
Confidence 456778889999999999999999999999983 334477777777778887754333222221 111 111 11
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh--------hCCCCCcchhH-HHHHHHHHHHHHHHHHhcCC
Q psy1701 124 NLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH--------RVPIPRHNMGY-YIMRGLMIIGTVLVAAIIPN 194 (270)
Q Consensus 124 n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~--------~~~~~~~~~~~-~~~r~~~~~~~~~lAi~ip~ 194 (270)
+........+...+..+..+.+.--.++...+.+...-++ +.+ +++.+.+ +.+.....++...+....|+
T Consensus 277 ~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~ 355 (461)
T PRK10746 277 KIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPN 355 (461)
T ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccC
Confidence 1111223344444555555554444445555555544221 222 2222322 22222222233334445666
Q ss_pred chhhHHHhhhhHH--HHHHHHHHHHHHHHHhcCC
Q psy1701 195 LGPIISLVGAICF--SMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 195 ~~~v~~lvGs~~~--~~l~filP~l~~l~~~~~~ 226 (270)
-+.+++.+-+.++ ..+.++++++.+++.++++
T Consensus 356 ~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~ 389 (461)
T PRK10746 356 PQRVFVYVYSASVLPGMVPWFVILISQLRFRRAH 389 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666665544433 5789999999999988653
No 18
>PRK10249 phenylalanine transporter; Provisional
Probab=97.77 E-value=0.0017 Score=61.17 Aligned_cols=170 Identities=15% Similarity=0.186 Sum_probs=90.9
Q ss_pred CCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-cc---cccc---
Q psy1701 50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-TK---GSIT--- 122 (270)
Q Consensus 50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-~~---~~il--- 122 (270)
.+.++..++....|+|.|--.+...-.|+|||++ ..++++..+.....++|...........+++ .. ++..
T Consensus 207 g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k--~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~ 284 (458)
T PRK10249 207 GWNGLILSLAVIMFSFGGLELIGITAAEARDPEK--SIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIF 284 (458)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhh--HHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHH
Confidence 3455678889999999999999999999999984 3345888888888999977544333222221 10 1111
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHh--------hhCCCCCcchhH-HHHHHHHHHHHHHHHHhcC
Q psy1701 123 LNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIK--------HRVPIPRHNMGY-YIMRGLMIIGTVLVAAIIP 193 (270)
Q Consensus 123 ~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~--------~~~~~~~~~~~~-~~~r~~~~~~~~~lAi~ip 193 (270)
++...++...+..++..+..+.+.--..+...+.+...-+ .+.+ +++.+.+ +.+..++..+..++....|
T Consensus 285 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~ 363 (458)
T PRK10249 285 HNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLP 363 (458)
T ss_pred HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCh
Confidence 1111112333333344444444333333334444433311 1222 2223333 2333333333333322333
Q ss_pred C--chhhHHHhhhhHHHHHHHHHHHHHHHHHhc
Q psy1701 194 N--LGPIISLVGAICFSMLGLFCPAVIDYVTFY 224 (270)
Q Consensus 194 ~--~~~v~~lvGs~~~~~l~filP~l~~l~~~~ 224 (270)
+ ++.+.++. .....+.|++|++.+++.++
T Consensus 364 ~~~f~~l~~~~--~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 364 QKAFGLLMALV--VATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 2 34444442 22578999999999999875
No 19
>PRK10655 potE putrescine transporter; Provisional
Probab=97.75 E-value=0.0035 Score=58.59 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=45.1
Q ss_pred CchhHHHHHHHHHhhcccccccccccccCCCC-CCchhhHhhHHHHHHHHHHHHHhhHH
Q psy1701 52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGH-FLGKFGVLNIAMAVVISFYGMVGYCG 109 (270)
Q Consensus 52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~g 109 (270)
.++..++....|+|.|-......-.|+|||+| .+| ++..+..++.++|++.....
T Consensus 189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~Y~l~~~~~ 244 (438)
T PRK10655 189 SAVGSSIAMTLWAFLGLESACANSDAVENPERNVPI---AVLGGTLGAAVIYIVSTNVI 244 (438)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHH
Confidence 34556677889999999999999999999983 444 89999999999999876543
No 20
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.74 E-value=0.0022 Score=60.50 Aligned_cols=168 Identities=14% Similarity=0.044 Sum_probs=91.3
Q ss_pred chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc----cccc----cccc
Q psy1701 53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED----TKGS----ITLN 124 (270)
Q Consensus 53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~----~~~~----il~n 124 (270)
++..++....|+|.|--.......|.||+++.+| ....+...+.++|.......+...+++ .+++ +.++
T Consensus 196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~---ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~ 272 (468)
T TIGR03810 196 QVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGK---ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEH 272 (468)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHhhccCcccchH---HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHH
Confidence 4556777899999998888888888888766666 888999999999998876655433321 1111 1112
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH--------hhhCCCCCcchhHHH-HHHHHHHHHHHHHH-hcCC
Q psy1701 125 LPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERI--------KHRVPIPRHNMGYYI-MRGLMIIGTVLVAA-IIPN 194 (270)
Q Consensus 125 ~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l--------~~~~~~~~~~~~~~~-~r~~~~~~~~~lAi-~ip~ 194 (270)
...++...+..++..++.+.+.--......+.+...- ..+.+ |++.+.+-+ ....+..+..++.. .-+.
T Consensus 273 ~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~ 351 (468)
T TIGR03810 273 MVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQA 351 (468)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHH
Confidence 1112334444555555555444333333434433321 11222 223333322 22222211111111 1123
Q ss_pred chhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 195 LGPIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 195 ~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
++.+.++. .....+.|.++++.++++++++
T Consensus 352 ~~~l~~~~--~~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 352 YNFAISLA--TSAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 55555553 2346789999999999887654
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.66 E-value=0.0032 Score=59.05 Aligned_cols=56 Identities=9% Similarity=0.049 Sum_probs=45.4
Q ss_pred CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHH
Q psy1701 52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCG 109 (270)
Q Consensus 52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~g 109 (270)
..+..++....|+|.|-......-+|+|||+| ..++++..+..++.++|.+....-
T Consensus 191 ~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r--~iPrai~~s~~i~~v~Y~l~~~~~ 246 (445)
T PRK10644 191 GAIQSTLNVTLWSFIGVESASVAAGVVKNPKR--NVPIATIGGVLIAAVCYVLSSTAI 246 (445)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc--chhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677889999999999999999999974 223489999999999999887653
No 22
>TIGR00909 2A0306 amino acid transporter.
Probab=97.63 E-value=0.0017 Score=60.46 Aligned_cols=170 Identities=13% Similarity=0.050 Sum_probs=92.3
Q ss_pred CCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-c-c--c---ccc
Q psy1701 50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-T-K--G---SIT 122 (270)
Q Consensus 50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-~-~--~---~il 122 (270)
++.++..++....|+|.|.........|+|||+| +.++.+..+..++.++|...........+.+ . + + .+.
T Consensus 193 ~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r--~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (429)
T TIGR00909 193 GFGGVGAATALVFFAFIGFEAISTAAEEVKNPER--DIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVG 270 (429)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccc--cccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHH
Confidence 3446778888999999999999999999999963 2234889999999999998865443222111 1 1 1 111
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh--------hCCCCCcchhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 123 LNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH--------RVPIPRHNMGYYIMRGLMIIGTVLVAAIIPN 194 (270)
Q Consensus 123 ~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~--------~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~ 194 (270)
.+...++...+..+...++.+.+.--......+.+...-++ +.++|.+.+.+-..-.. .++.++ ....+
T Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~--~i~~~~-~~~~~ 347 (429)
T TIGR00909 271 YDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFS--LTAALL-ASLVP 347 (429)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHH--HHHHHH-HHHcC
Confidence 11122233444455555555555444334444444433211 11222233333111111 111111 23456
Q ss_pred chhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 195 LGPIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 195 ~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
++.+.++. + ....+.|++.++-.+++++++
T Consensus 348 ~~~l~~~~-~-~~~~~~y~~~~~a~~~lr~~~ 377 (429)
T TIGR00909 348 LEGLAELT-S-IGTLIAFAAVNVAVIILRRRR 377 (429)
T ss_pred HHHHHHHH-H-HHHHHHHHHHHHHHHHHHhhc
Confidence 77777654 2 235677787777777766543
No 23
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.59 E-value=0.0036 Score=58.82 Aligned_cols=170 Identities=15% Similarity=0.072 Sum_probs=94.6
Q ss_pred CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhc-Cccc----c---ccc
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYG-EDTK----G---SIT 122 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG-~~~~----~---~il 122 (270)
+.++..++....|+|.|-..+.....|+|||+| ..++++..+...+.++|+...+.--..-. ++.+ + ...
T Consensus 180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r--~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~ 257 (446)
T PRK10197 180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPEK--HIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVL 257 (446)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh--hHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHH
Confidence 446788889999999999999999999999984 33447777888888889886554222211 1111 0 112
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh--------hCCCCCcchhHHHHHH-HHHHHHHHHHHhcC
Q psy1701 123 LNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH--------RVPIPRHNMGYYIMRG-LMIIGTVLVAAIIP 193 (270)
Q Consensus 123 ~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~--------~~~~~~~~~~~~~~r~-~~~~~~~~lAi~ip 193 (270)
+.....+...+......+..+.+.--..+...+.+...-++ +.+ +++.+.+-..-. ++..+..++....|
T Consensus 258 ~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~ 336 (446)
T PRK10197 258 ELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAP 336 (446)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcCh
Confidence 22222233444445455555555444445555555443221 122 222333322222 22222222222222
Q ss_pred --CchhhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701 194 --NLGPIISLVGAICFSMLGLFCPAVIDYVTFYD 225 (270)
Q Consensus 194 --~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~ 225 (270)
.++.++++.|.. ..+.+.++++-+++++++
T Consensus 337 ~~~~~~l~~~~~~~--~li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 337 AKVFKFLIDSSGAI--ALLVYLVIAVSQLRMRKI 368 (446)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 366677765544 458899999999888763
No 24
>PRK15049 L-asparagine permease; Provisional
Probab=97.49 E-value=0.0077 Score=57.46 Aligned_cols=166 Identities=11% Similarity=0.023 Sum_probs=90.1
Q ss_pred hHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcC-ccc---ccc---cccCCC
Q psy1701 55 PLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGE-DTK---GSI---TLNLPK 127 (270)
Q Consensus 55 ~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~-~~~---~~i---l~n~~~ 127 (270)
..++....|+|.|--.+...-.|+|||++ ..++++..++....++|+..........+. +.+ ++. ......
T Consensus 223 ~~~~~~~~faf~G~e~i~~~aeE~knP~r--~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~ 300 (499)
T PRK15049 223 LVLIQGVVFAFASIEMVGTAAGECKDPQT--MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGV 300 (499)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcChhh--HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCc
Confidence 34455789999999999999999999985 334578888888888888766543333321 111 111 111111
Q ss_pred chHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh--------hCCCCCcchhHH-HHHHHHHHHHHHHHHhcCC--ch
Q psy1701 128 DPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH--------RVPIPRHNMGYY-IMRGLMIIGTVLVAAIIPN--LG 196 (270)
Q Consensus 128 ~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~--------~~~~~~~~~~~~-~~r~~~~~~~~~lAi~ip~--~~ 196 (270)
.+...+..+...+..+.+.--..+...+.+...-++ +.+ +++.+.+- ....++.++..++....|+ ++
T Consensus 301 ~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~ 379 (499)
T PRK15049 301 PYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFE 379 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 233344444555555544443444455555443221 122 22333332 2222222222222223332 55
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701 197 PIISLVGAICFSMLGLFCPAVIDYVTFYD 225 (270)
Q Consensus 197 ~v~~lvGs~~~~~l~filP~l~~l~~~~~ 225 (270)
.++++. ..+..+.|.+|++.+++.+++
T Consensus 380 ~l~~~~--~~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 380 IVLNFA--SLGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 555653 345788999999999988754
No 25
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.48 E-value=0.007 Score=56.64 Aligned_cols=52 Identities=10% Similarity=0.010 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHhhcccccccccccccCCCC-CCchhhHhhHHHHHHHHHHHHHhh
Q psy1701 53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGH-FLGKFGVLNIAMAVVISFYGMVGY 107 (270)
Q Consensus 53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~ 107 (270)
++..++....|+|.|.......-.|+|||++ .+| ++..+..++.++|...-.
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ipr---ai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 192 GVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPR---GLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCH---HHHHHHHHHHHHHHHHHH
Confidence 4567777889999999999999999999974 444 888888888888876643
No 26
>PRK11021 putative transporter; Provisional
Probab=97.47 E-value=0.013 Score=54.37 Aligned_cols=169 Identities=13% Similarity=0.120 Sum_probs=91.4
Q ss_pred CCCchhHHHHHHHHHhhcccccccccccccCCCC-CCchhhHhhHHHHHHHHHHHHHhhH--HHHhhcCccc--ccc---
Q psy1701 50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGH-FLGKFGVLNIAMAVVISFYGMVGYC--GYLKYGEDTK--GSI--- 121 (270)
Q Consensus 50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~--gY~~fG~~~~--~~i--- 121 (270)
++.++..++....|+|.|.-.....-+|+|||+| .+| ....+...+.++|...... +...++|..+ +..
T Consensus 175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPr---Ai~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~ 251 (410)
T PRK11021 175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPR---ALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGI 251 (410)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHH
Confidence 4566788889999999999999999999999974 444 8999999999999988654 2222333211 111
Q ss_pred ccc-CCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH--------hhhCCCCCcchhHH-HHHHHHHHHHHHHHH-
Q psy1701 122 TLN-LPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERI--------KHRVPIPRHNMGYY-IMRGLMIIGTVLVAA- 190 (270)
Q Consensus 122 l~n-~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l--------~~~~~~~~~~~~~~-~~r~~~~~~~~~lAi- 190 (270)
.+. +++ +...+..+...+..+.+.........+.+...- ..+.+ |++.+.+- .....+..+..++..
T Consensus 252 ~~~~~G~-~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~ 329 (410)
T PRK11021 252 FVQLFGG-YALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLS-ARGVPVNALNAVLGCCAVSILLIYA 329 (410)
T ss_pred HHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 111 111 111222222233333332222222333333221 11222 22333332 222222222222222
Q ss_pred hcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701 191 IIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYD 225 (270)
Q Consensus 191 ~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~ 225 (270)
.-.+++.+.++.. ....+.|.++++-.+++.++
T Consensus 330 ~~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 330 LGLNLEALIAYAN--GIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred HhcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc
Confidence 3457787777643 44678888888888887754
No 27
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.46 E-value=0.017 Score=54.67 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=44.3
Q ss_pred chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHH
Q psy1701 53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCG 109 (270)
Q Consensus 53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~g 109 (270)
++..++....|+|.|-..+...-.|+|||++ ..++++..+...+.++|.......
T Consensus 207 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~r--~iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 207 PILMTMVAVNFAFSGTELIGIAAGETENPAK--VIPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhcChhh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667789999999999999999999984 334588888888899998876543
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.45 E-value=0.0065 Score=57.40 Aligned_cols=171 Identities=15% Similarity=0.080 Sum_probs=88.5
Q ss_pred CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhc-Cccc---ccc---ccc
Q psy1701 52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYG-EDTK---GSI---TLN 124 (270)
Q Consensus 52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG-~~~~---~~i---l~n 124 (270)
.++..++....|+|.|--.+...-+|+|||+| ..++++..+.....+.|..........-+ ++.. ++. ...
T Consensus 211 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r--~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~ 288 (469)
T PRK11049 211 SGFFAGFQIAVFAFVGIELVGTTAAETKDPEK--SLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVL 288 (469)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhh--HHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHH
Confidence 45778889999999999999999999999984 23346666666777788766544332211 1111 111 111
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHh--------hhCCCCCcchhHHHHHHHH-HHHHHHHHHhcCCc
Q psy1701 125 LPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIK--------HRVPIPRHNMGYYIMRGLM-IIGTVLVAAIIPNL 195 (270)
Q Consensus 125 ~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~--------~~~~~~~~~~~~~~~r~~~-~~~~~~lAi~ip~~ 195 (270)
....+...+..++..++.+.+.--..+...+.+...-+ .+.+ +++.+.+-+.-... ..+...+....|+.
T Consensus 289 ~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~ 367 (469)
T PRK11049 289 VGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSV 367 (469)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccH
Confidence 11112333344444444333332222333333333221 1222 22333333222222 22223344456665
Q ss_pred hhhHHHhhhhH--HHHHHHHHHHHHHHHHhcC
Q psy1701 196 GPIISLVGAIC--FSMLGLFCPAVIDYVTFYD 225 (270)
Q Consensus 196 ~~v~~lvGs~~--~~~l~filP~l~~l~~~~~ 225 (270)
...++.+-+.+ ...+.+.++++-+++++++
T Consensus 368 ~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~ 399 (469)
T PRK11049 368 IGAFTLVTTVSAILFMFVWTIILCSYLVYRKQ 399 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555433332 3557888999888888765
No 29
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.42 E-value=0.011 Score=55.83 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhh
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGY 107 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~ 107 (270)
+.++..++....|+|.|--.....-+|+|||+| ..++++..+...+.++|.....
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r--~iPrai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPRK--SIPRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcChhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777889999999999999999999984 3345889999999999998754
No 30
>PRK10836 lysine transporter; Provisional
Probab=97.38 E-value=0.012 Score=55.83 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHH
Q psy1701 56 LFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCG 109 (270)
Q Consensus 56 ~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~g 109 (270)
.......|+|.|--.+...-.|+|||+| ..++++..++..+.++|......-
T Consensus 209 ~~~~~~~faf~G~e~~~~~a~E~knP~r--~iPrAi~~~~~~v~~~Yvl~~~~~ 260 (489)
T PRK10836 209 GVAMIVGFSFQGTELIGIAAGESEDPAK--NIPRAVRQVFWRILLFYVFAILII 260 (489)
T ss_pred HHHHHHHHHHccHHHHHHHHHHhcCHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567999999999999999999984 334588889999999999876543
No 31
>KOG1287|consensus
Probab=97.34 E-value=0.0049 Score=57.77 Aligned_cols=172 Identities=17% Similarity=0.194 Sum_probs=107.7
Q ss_pred CCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhc--Cccccc-ccccCC
Q psy1701 50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYG--EDTKGS-ITLNLP 126 (270)
Q Consensus 50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG--~~~~~~-il~n~~ 126 (270)
+..++..++-.-.|||.|=...=.+-.|+|||+| ..+++...++.++++.|+..=+..+-+-. +-.+++ +-..+.
T Consensus 202 ~~g~i~lafysglfa~~GWd~lN~vteEiknP~k--tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa 279 (479)
T KOG1287|consen 202 DVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRR--TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFA 279 (479)
T ss_pred chHHHHHHHHHhhhcccCchhhccchHhhcCccc--cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHH
Confidence 4456778898899999999888889999999984 33459999999999999998665443332 111111 111111
Q ss_pred Cc---hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhh--------CCCCCcchhHHHHHHHHHHHHHHHHHhcCCc
Q psy1701 127 KD---PFSESIKILVALSILFTYGLQFGVPSEIVWERIKHR--------VPIPRHNMGYYIMRGLMIIGTVLVAAIIPNL 195 (270)
Q Consensus 127 ~~---~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~--------~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~ 195 (270)
+. .+..++.++.+++.+.+.--.++...+.+...-++. .+.++.+++ ..+...+..+.+...+.|+
T Consensus 280 ~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~---~allf~~~~~i~~~~~~d~ 356 (479)
T KOG1287|consen 280 DRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPR---PALLFSGLLSIVLSLIGDF 356 (479)
T ss_pred HHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCCh---HHHHHHHHHHHHHHHHhhH
Confidence 11 223455555555555554444444444443332221 111221111 2233334444555567799
Q ss_pred hhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 196 GPIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 196 ~~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
+.+++.++=.-.....+.+=+++++|.++++
T Consensus 357 ~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 357 DQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999888888888899999999988775
No 32
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.26 E-value=0.024 Score=53.40 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=42.3
Q ss_pred CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhH
Q psy1701 52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYC 108 (270)
Q Consensus 52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~ 108 (270)
.++..++....|+|.|--.....-.|+|||+| ..+++...+.....++|......
T Consensus 199 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k--~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 199 LGMVMSLQMVMFAYGGIEIIGITAGEAKDPEK--SIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778899999999999999999999985 23346667777777788776543
No 33
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.23 E-value=0.011 Score=55.40 Aligned_cols=56 Identities=16% Similarity=0.292 Sum_probs=46.0
Q ss_pred CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhH
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYC 108 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~ 108 (270)
+.++..++....|+|.|-......-+|+|||+| ..++++..++.++.++|......
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r--~iP~Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNPGK--TMPRALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc--cchHHHHHHHHHHHHHHHHHHHH
Confidence 345667778899999999999999999999984 22348999999999999887653
No 34
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.22 E-value=0.013 Score=55.19 Aligned_cols=168 Identities=14% Similarity=0.147 Sum_probs=85.6
Q ss_pred chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHH--HHhhcCc--ccccc---cccC
Q psy1701 53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCG--YLKYGED--TKGSI---TLNL 125 (270)
Q Consensus 53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~g--Y~~fG~~--~~~~i---l~n~ 125 (270)
++..+++...|+|.|--.....-.|+|||+| ..+++...+.....+.|...-... ...+.+- .+++. +.+.
T Consensus 201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP~r--~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~ 278 (456)
T PRK10238 201 GLVMMMAIIMFSFGGLELVGITAAEADNPEQ--SIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHEL 278 (456)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcChhh--HHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHc
Confidence 4446677899999999999999999999984 233477666676777776542221 1111111 01111 1222
Q ss_pred CCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHh--------hhCCCCCcchhHHH-HHHHHHHHHHHHHHhcCC--
Q psy1701 126 PKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIK--------HRVPIPRHNMGYYI-MRGLMIIGTVLVAAIIPN-- 194 (270)
Q Consensus 126 ~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~--------~~~~~~~~~~~~~~-~r~~~~~~~~~lAi~ip~-- 194 (270)
.......+...+..+..+.+.--..+...+.++..-+ .+.+ +++.+.+-+ +..++..+..++....|+
T Consensus 279 g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~ 357 (456)
T PRK10238 279 GDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESA 357 (456)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 2223333444444444444433334445455444321 1222 223333322 222222222222112232
Q ss_pred chhhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701 195 LGPIISLVGAICFSMLGLFCPAVIDYVTFYD 225 (270)
Q Consensus 195 ~~~v~~lvGs~~~~~l~filP~l~~l~~~~~ 225 (270)
++.+.++. ..+..+.|.+|.+.+++.+++
T Consensus 358 f~~l~~~~--~~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 358 FGLLMALV--VSALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45555552 335678999999999998864
No 35
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.19 E-value=0.0084 Score=57.99 Aligned_cols=168 Identities=11% Similarity=0.014 Sum_probs=93.6
Q ss_pred CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-c--cccc---ccc
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-T--KGSI---TLN 124 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-~--~~~i---l~n 124 (270)
+.++..+.....|+|.|--.+...-.|+|||++ ..++....++.++.++|..+...--..-+.+ . ++.+ ...
T Consensus 230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r--~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~ 307 (557)
T TIGR00906 230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQR--AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEY 307 (557)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHhHHhccCccc--cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHH
Confidence 345777888899999999999999999999985 2234899999999999998875433222211 1 1111 122
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH--------hhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCCch
Q psy1701 125 LPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERI--------KHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLG 196 (270)
Q Consensus 125 ~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l--------~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~~ 196 (270)
.+.++...+..+........+.--.++...+.+...- ..+.++|.+.+.+-..-. .+++.+++. +.+++
T Consensus 308 ~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~--~iv~~il~~-~~~~~ 384 (557)
T TIGR00906 308 VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVS--GAIAALMAF-LFDLK 384 (557)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHH--HHHHHHHHH-HcCHH
Confidence 2222333344444444444333333334444443331 122222333333322222 222233333 33577
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701 197 PIISLVGAICFSMLGLFCPAVIDYVTFYD 225 (270)
Q Consensus 197 ~v~~lvGs~~~~~l~filP~l~~l~~~~~ 225 (270)
.+.++. + .+..+.|.++++..+.++++
T Consensus 385 ~l~~l~-s-ig~ll~y~lv~~~~l~lR~~ 411 (557)
T TIGR00906 385 ALVDLL-S-IGTLLAYSLVAACVLILRYQ 411 (557)
T ss_pred HHHHHH-H-HHHHHHHHHHHHHHHHhhcc
Confidence 777764 3 34679999998887777743
No 36
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.16 E-value=0.014 Score=54.64 Aligned_cols=57 Identities=11% Similarity=-0.028 Sum_probs=48.2
Q ss_pred CCchhHHHHHHHHHhhcccccccccccccCCC-CCCchhhHhhHHHHHHHHHHHHHhhHHH
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPG-HFLGKFGVLNIAMAVVISFYGMVGYCGY 110 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~gY 110 (270)
+.++..++....|+|.|--.+...-.|+|||+ +.+| +...+...+.++|........
T Consensus 186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPr---Ai~~~~~iv~ilYil~~~~~~ 243 (435)
T PRK10435 186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPL---ATMLGTGLAGIIYIAATQVIS 243 (435)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999996 4555 889999999999998876544
No 37
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.12 E-value=0.019 Score=53.23 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=98.6
Q ss_pred CCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcc---cccc-----
Q psy1701 50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDT---KGSI----- 121 (270)
Q Consensus 50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~---~~~i----- 121 (270)
.+.....+++..+|+|.|-.......+|+|| ++.+| .+..+..++.++|......-....+++. .++.
T Consensus 186 ~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~---ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (426)
T PF13520_consen 186 GWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPR---AIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFA 261 (426)
T ss_dssp SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHH
T ss_pred cccchhhHHHHHHhhcccccccccccccccc-hhhee---ecccchhHHHHHHhhhhheeeecccchhhhcccccccccc
Confidence 4556788899999999999999999999887 44555 8999999999999998765555544321 1121
Q ss_pred --cccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhh-CCC------CCcchhHHHHHHHHHHHHHHHHH-h
Q psy1701 122 --TLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHR-VPI------PRHNMGYYIMRGLMIIGTVLVAA-I 191 (270)
Q Consensus 122 --l~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~-~~~------~~~~~~~~~~r~~~~~~~~~lAi-~ 191 (270)
.+....++...+..++..+..+.+....+....+.++..-+++ .|+ |++.+.+-..-...+.....+.. .
T Consensus 262 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~ 341 (426)
T PF13520_consen 262 VLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVNKFGTPYNAIILVAVISSILLLLFLF 341 (426)
T ss_dssp HHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTSSSSSCHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhccccccccccccccccccccccccchhhcchhhcccccccccchhhhhhhccccCCceeeehhhhHHHHHHHHHHHh
Confidence 1111112445555556666666666555556666666554332 121 22222232222222211111112 2
Q ss_pred cC--CchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 192 IP--NLGPIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 192 ip--~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
.| +++.+.+. +.....+.++++.+.+++.++++
T Consensus 342 ~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ 376 (426)
T PF13520_consen 342 IPQSSFDILVSL--SSVGYLISYILVILAVLFLRRKR 376 (426)
T ss_dssp SSSSHHHHHHHH--HHHHTHHHHHHHHHHHHHTHHHS
T ss_pred hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhc
Confidence 33 34555554 23346777788887777777654
No 38
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.12 E-value=0.0078 Score=57.35 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=47.0
Q ss_pred CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHH
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCG 109 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~g 109 (270)
+.++..++....|+|.|-..+...-.|+|||++ ..++++..+..++.++|.+....-
T Consensus 234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r--~iPrAi~~s~~~v~~~Y~l~~~a~ 290 (501)
T TIGR00911 234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR--TLPIAIIISMPIVTFIYVLTNIAY 290 (501)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999974 234489999999999999986543
No 39
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.12 E-value=0.02 Score=53.80 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=43.0
Q ss_pred CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhh
Q psy1701 52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGY 107 (270)
Q Consensus 52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~ 107 (270)
.++..++....|+|.|--.....-.|+|||+| ..+++...+......+|+....
T Consensus 201 ~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r--~iPrAi~~~~~~~~~~y~l~~~ 254 (452)
T TIGR01773 201 GAVLLAILVTMFSFMGTEIVTIAAAESSNPIK--SITRATNSVIWRIIVFYLGSIF 254 (452)
T ss_pred HHHHHHHHHHHHHhccHHHHhHHHHhhcChhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888999999999999999999999984 2334776777778888887544
No 40
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.07 E-value=0.043 Score=51.29 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=92.3
Q ss_pred CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcC-cccccccccCC----
Q psy1701 52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGE-DTKGSITLNLP---- 126 (270)
Q Consensus 52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~-~~~~~il~n~~---- 126 (270)
..+..+++...++|.|-......-+|+|||++- .++....++..+.++|.......-...++ +.... ..+.|
T Consensus 201 ~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~--ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~p~~~~ 277 (466)
T COG0531 201 GGILAAILLAFFAFTGFEAIATLAEEVKNPKRT--IPRAIILSLLIVLILYILGALVIVGVLPAGDLAAS-APSAPLALA 277 (466)
T ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhcCcccc--ccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhcc-CCCccHHHH
Confidence 356777788899999999999999999999642 23488899999999999988766666654 22211 11111
Q ss_pred -----CchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHh--------hhCCCCCcchhHHHHHHHHHHHHHHHHHhc-
Q psy1701 127 -----KDPFSESIKILVALSILFTYGLQFGVPSEIVWERIK--------HRVPIPRHNMGYYIMRGLMIIGTVLVAAII- 192 (270)
Q Consensus 127 -----~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~--------~~~~~~~~~~~~~~~r~~~~~~~~~lAi~i- 192 (270)
..+...+..+...++.+.+..-......+.+...-+ .+.+++.+.+.+-..-..++.. .+....
T Consensus 278 ~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~--~l~~~~~ 355 (466)
T COG0531 278 ALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISL--ILLLLFP 355 (466)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHH--HHHHHhh
Confidence 112333333344444444432222222233322211 1222222233333222222222 122221
Q ss_pred ---CCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 193 ---PNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 193 ---p~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
..++.+.++ +.....+.|.++++..++.++++
T Consensus 356 ~~~~~~~~l~~~--~~~~~~~~y~~~~~~~~~~~~~~ 390 (466)
T COG0531 356 LSSIAFNALVSL--ASVAFLIAYLLVALALLVLRRKK 390 (466)
T ss_pred ccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 234455554 34457889999999998888763
No 41
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.05 E-value=0.03 Score=52.96 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=44.4
Q ss_pred CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHH
Q psy1701 52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCG 109 (270)
Q Consensus 52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~g 109 (270)
..+..++....|+|.|--.....-+|+||+++.+| .+..+..++.++|+......
T Consensus 199 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPr---ai~~~~~i~~~~Yil~~~~~ 253 (473)
T TIGR00905 199 SQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGK---ATVLGTLGALVIYILITLLS 253 (473)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHH
Confidence 34566777899999999999999999999444444 89999999999998886543
No 42
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.01 E-value=0.053 Score=51.88 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhcccccccccccccCCCC-CCchhhHhhHHHHHHHHHHHHHh
Q psy1701 56 LFFSTVLFAMEGIGTVLPIENSMKKPGH-FLGKFGVLNIAMAVVISFYGMVG 106 (270)
Q Consensus 56 ~~~gi~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~y~~~g 106 (270)
..+...+|+|.|--.....-+|+|||+| ++| ++..+..++.++|....
T Consensus 198 ~~~~~~~faf~G~E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 198 VVFVAFIGAYMGVEASASHINELENPGRDYPL---AMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHH
Confidence 3444568999999999999999999974 555 88888888888887544
No 43
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=96.88 E-value=0.076 Score=50.28 Aligned_cols=50 Identities=14% Similarity=0.016 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHh
Q psy1701 55 PLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVG 106 (270)
Q Consensus 55 ~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g 106 (270)
..++-...|+|.|--.....-.|+|||+| ..+++...+..+..+++....
T Consensus 220 ~~~~~~~~fsf~G~e~~~~~a~E~knP~r--~iP~Ai~~s~~i~~~~~~~~~ 269 (482)
T TIGR00907 220 LLGLLNPAWSMTGYDGTAHMAEEIENPEV--VGPRAIIGAVAIGIVTGFCFN 269 (482)
T ss_pred hhhhhhhHHHhcCcchhhHHHHhcCChhh--hcCHHHHHHHHHHHHHHHHHH
Confidence 34444567999999999999999999984 223477777776665544333
No 44
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.84 E-value=0.08 Score=54.38 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhh
Q psy1701 54 FPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGY 107 (270)
Q Consensus 54 ~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~ 107 (270)
+...++++.+||.|.-....+-.|+|||++ ..++....++.+++++|+++.+
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP~r--~IPratl~ai~i~~vlYllv~~ 333 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDPQK--AIPKGTLLAILTTTVVYLGSVV 333 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhh--hhHHHHHHHHHHHHHHHHHHHH
Confidence 778888888899998888889999999984 3345899999999999999975
No 45
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=96.66 E-value=0.16 Score=48.31 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=42.5
Q ss_pred chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhh
Q psy1701 53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGY 107 (270)
Q Consensus 53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~ 107 (270)
++..++....|+|.|--.....-+|+|||++ ..+++...+...+..+|....+
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~--~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPEK--NFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCCCc--cccHHHHHHHHHHHHHHHHHHH
Confidence 3555667788999999999999999999984 2234888999999999997644
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.21 E-value=0.5 Score=44.68 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhc
Q psy1701 56 LFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYG 114 (270)
Q Consensus 56 ~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG 114 (270)
.+.-...|+|.|--.....-+|+|||+| ..++.+..+..+..++|...-+......+
T Consensus 217 ~~~~~~~~~f~G~e~~~~~aeE~knP~r--~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 217 VSGLMAAYVMVGFGSAGELSEETKNPRR--VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHhcCcchHHHHHHHhcCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3445678999999999999999999984 23447888888777666555443333333
No 47
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=96.16 E-value=0.048 Score=50.71 Aligned_cols=213 Identities=15% Similarity=0.101 Sum_probs=113.2
Q ss_pred hhHHHHhhcchhhhhhHhhhheeeeee-cccCC---CCCCCC-----CCCCCCchhHHHHHHHHHhhccccccccccccc
Q psy1701 9 FQEFWIDARGFRDNHSGHFMYLLCTYA-VTDLP---DTSTRH-----NVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMK 79 (270)
Q Consensus 9 ~~~~w~~~~~~~~~~~~~~~~~i~~y~-~~~~~---~~~~~~-----~~~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~ 79 (270)
.-|||...-+..+-+..+.+++.+... +.+.. +.++.. .+..+.++..++-+.+|||++.-.+=-.-+|-|
T Consensus 151 E~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~ 230 (462)
T COG1113 151 ELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAK 230 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 468998877776555554444433222 22221 112221 134466788999999999999988877788999
Q ss_pred CCCCCCchhhHhhHHHH-----HHHHHHHHHhhHHHHhhcCcccccc--cccCCCchHHHHHHHHHHHHHHHHhhcchhh
Q psy1701 80 KPGHFLGKFGVLNIAMA-----VVISFYGMVGYCGYLKYGEDTKGSI--TLNLPKDPFSESIKILVALSILFTYGLQFGV 152 (270)
Q Consensus 80 ~p~~~~~~~~v~~~s~~-----~~~~~y~~~g~~gY~~fG~~~~~~i--l~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p 152 (270)
||++- .+|+.+--.. -+..+..+..+.-|-.++++.++-+ +..++-.....+.+.........+.-=-.|.
T Consensus 231 dP~k~--ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys 308 (462)
T COG1113 231 DPEKA--IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYS 308 (462)
T ss_pred ChhhH--HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccc
Confidence 99852 2234333333 3334444555555555555433322 2222222222222222222222222223344
Q ss_pred HHHHHHHHHhhhC-CC------CCc-chhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHHHHH--HHHHHHHHHHHH
Q psy1701 153 PSEIVWERIKHRV-PI------PRH-NMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSML--GLFCPAVIDYVT 222 (270)
Q Consensus 153 ~~~~l~~~l~~~~-~~------~~~-~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l--~filP~l~~l~~ 222 (270)
.-+++...-.+.. |+ |+. ...-+....+...+..++....| +.++.++=+.++... ...+=.+.|+|.
T Consensus 309 tsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~ 386 (462)
T COG1113 309 TSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKL 386 (462)
T ss_pred cchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555432221 11 122 23456677777778888888999 666666655554443 344456777787
Q ss_pred hcC
Q psy1701 223 FYD 225 (270)
Q Consensus 223 ~~~ 225 (270)
++.
T Consensus 387 rk~ 389 (462)
T COG1113 387 RKA 389 (462)
T ss_pred Hhc
Confidence 763
No 48
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=95.74 E-value=0.037 Score=52.31 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=50.9
Q ss_pred CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhc
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYG 114 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG 114 (270)
+.++..++....++|.|--.....-.|.|||+| ..++....+.....++|.......=...+
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k--~IPra~~~~~~~~~v~y~~~~~~~~~~~~ 260 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPRK--TIPRATLLSVLRIGVFYVLTSYALTLAVP 260 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCchh--hhhhHhhhhhhhhhhhhhhhhhhcccccC
Confidence 667889999999999999999999999999984 33458889999999999987765444444
No 49
>KOG1286|consensus
Probab=94.91 E-value=0.6 Score=45.16 Aligned_cols=169 Identities=14% Similarity=0.156 Sum_probs=98.6
Q ss_pred CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhH-HHHhhcCc--ccccccc----
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYC-GYLKYGED--TKGSITL---- 123 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~-gY~~fG~~--~~~~il~---- 123 (270)
+.++...+-...|+|.|--.+-..-.|-|||++ ..+++...++..+..+|....+. |-..=.++ ..++...
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k--~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF 308 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPRK--AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPF 308 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCCcc--cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHH
Confidence 678889999999999999999999999999983 34558999999999999988753 33221222 2222110
Q ss_pred --cCCC---chHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhC-CC----CCcchhHHHHHHHHH-HHHHHHHHhc
Q psy1701 124 --NLPK---DPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRV-PI----PRHNMGYYIMRGLMI-IGTVLVAAII 192 (270)
Q Consensus 124 --n~~~---~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~-~~----~~~~~~~~~~r~~~~-~~~~~lAi~i 192 (270)
...+ ..+..+++.+..+.+..+---.+++.-+.+...-+++. |+ -+++ .+=...+.+. +...++++..
T Consensus 309 ~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~ 387 (554)
T KOG1286|consen 309 VIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNF 387 (554)
T ss_pred HHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHh
Confidence 1111 13334666666666655555556677666665533221 11 0111 1111222222 2223333332
Q ss_pred CC-----chhhHHHhhhhHHHHHHHHHHHHHHHHHhc
Q psy1701 193 PN-----LGPIISLVGAICFSMLGLFCPAVIDYVTFY 224 (270)
Q Consensus 193 p~-----~~~v~~lvGs~~~~~l~filP~l~~l~~~~ 224 (270)
.. ++.++++.|- ++.+++.+=++.|++.++
T Consensus 388 ~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 388 SLGAATVFNWLVNLSSI--GTLFAWTLVALSHLRFRY 422 (554)
T ss_pred ccccchHHHHHHHHHhH--HHHHHHHHHHHHHeeeee
Confidence 22 4888888654 366677777777777664
No 50
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=94.27 E-value=0.65 Score=42.07 Aligned_cols=164 Identities=12% Similarity=0.109 Sum_probs=91.0
Q ss_pred CCCchhHHH-HHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCccccc----cc--
Q psy1701 50 PFTQFPLFF-STVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGS----IT-- 122 (270)
Q Consensus 50 ~~~~~~~~~-gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~----il-- 122 (270)
++.+...+. ....++|.+.....-...+++||++.+| ....+..+...+|...-...-..+|.+.-++ ..
T Consensus 176 g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~ 252 (359)
T TIGR00912 176 GLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKK---SIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLEL 252 (359)
T ss_pred CcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHH---HHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHH
Confidence 344444433 3678889887777777788888876555 8889999999999988877777777442211 11
Q ss_pred -ccC--CC--chHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCCchh
Q psy1701 123 -LNL--PK--DPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGP 197 (270)
Q Consensus 123 -~n~--~~--~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~ 197 (270)
+.. ++ +.+..+.-.......+...-+.++.....+.+.++.+ +. +....-.+. ....++ ..||-..
T Consensus 253 ~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~--~~~~~~-~~~~~~~ 323 (359)
T TIGR00912 253 IKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKR----KY--SILILPVLM--VIFSIS-FFPDSSN 323 (359)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----Cc--chhHHHHHH--HHHHHH-HccchHH
Confidence 111 10 0122222233344556666667777777776655432 21 122222222 222233 3555222
Q ss_pred hHHHhh---hhHHHHHHHHHHHHHHHHHhcC
Q psy1701 198 IISLVG---AICFSMLGLFCPAVIDYVTFYD 225 (270)
Q Consensus 198 v~~lvG---s~~~~~l~filP~l~~l~~~~~ 225 (270)
-..... ...+....+++|-++.+...-|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~P~ll~~i~~ik 354 (359)
T TIGR00912 324 QLFDYLEFLPIIAIVFFLLLPLILFIIVKIK 354 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 2334567778999887766543
No 51
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=93.16 E-value=8 Score=37.10 Aligned_cols=213 Identities=11% Similarity=0.090 Sum_probs=110.7
Q ss_pred hhhHHHHhhcchhhhhhHhhhheeeeee-cccCCCC-----CCC-CCCCCCCchhHHHHHHHHHhhcccccccccccccC
Q psy1701 8 NFQEFWIDARGFRDNHSGHFMYLLCTYA-VTDLPDT-----STR-HNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKK 80 (270)
Q Consensus 8 ~~~~~w~~~~~~~~~~~~~~~~~i~~y~-~~~~~~~-----~~~-~~~~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~ 80 (270)
-.-|||...-+.+..+..+.+.+++.+. ..+.... .++ +....+.++...+-+..|||.|.-.+---..|-+|
T Consensus 183 GE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~n 262 (541)
T COG0833 183 GETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESEN 262 (541)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCC
Confidence 3458999877776544333333322222 1221111 111 12233455666667788999998888778889999
Q ss_pred CCCCCchhhHhhHHHHHHHHHHHHHhh-HHHHh-hcCc----------cccccc---ccCCCchHHHHHHHHHHHHHHHH
Q psy1701 81 PGHFLGKFGVLNIAMAVVISFYGMVGY-CGYLK-YGED----------TKGSIT---LNLPKDPFSESIKILVALSILFT 145 (270)
Q Consensus 81 p~~~~~~~~v~~~s~~~~~~~y~~~g~-~gY~~-fG~~----------~~~~il---~n~~~~~~~~~~~i~~~i~~~~s 145 (270)
|++ ..+++..-...=..++|+..-+ .|-+. |.|. .+++.. +|.+-..+..+.+.....+++.+
T Consensus 263 P~K--~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa 340 (541)
T COG0833 263 PRK--SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSA 340 (541)
T ss_pred chh--hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHH
Confidence 984 2334666556556666654332 23322 3220 111222 22221144556665565655555
Q ss_pred hhcchhhHHHHHHHHHhhhC-CC------CCcchhHHHHHHHHHHHHHHHHHhcCC---chhhHHHhhhhHHHHHHHHHH
Q psy1701 146 YGLQFGVPSEIVWERIKHRV-PI------PRHNMGYYIMRGLMIIGTVLVAAIIPN---LGPIISLVGAICFSMLGLFCP 215 (270)
Q Consensus 146 ~pl~~~p~~~~l~~~l~~~~-~~------~~~~~~~~~~r~~~~~~~~~lAi~ip~---~~~v~~lvGs~~~~~l~filP 215 (270)
--=.+|..-+.+...-.++. |+ |+..+..-+.-+.++.+...++...+. ++-++++.|-. ..++.+-=
T Consensus 341 ~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I 418 (541)
T COG0833 341 ANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSI 418 (541)
T ss_pred hhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHH
Confidence 44456777777777643322 11 233333333334444444444443333 45556665443 45666667
Q ss_pred HHHHHHHhc
Q psy1701 216 AVIDYVTFY 224 (270)
Q Consensus 216 ~l~~l~~~~ 224 (270)
++.|++.++
T Consensus 419 ~~shirFR~ 427 (541)
T COG0833 419 CLSHIRFRR 427 (541)
T ss_pred HHHHHHHHH
Confidence 788888764
No 52
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=87.92 E-value=10 Score=35.00 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=18.2
Q ss_pred CchhhHHHhhhhHHHHHHHHHHHHHHHHH
Q psy1701 194 NLGPIISLVGAICFSMLGLFCPAVIDYVT 222 (270)
Q Consensus 194 ~~~~v~~lvGs~~~~~l~filP~l~~l~~ 222 (270)
.++.++++ +...+.+++|..+-+.+
T Consensus 323 Gl~~Ii~~----~~PvL~~~YP~~i~lil 347 (378)
T TIGR00796 323 GLTQIISI----SIPVLMIIYPLAIVLIL 347 (378)
T ss_pred CHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 67777764 57888889998766654
No 53
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=87.85 E-value=24 Score=33.03 Aligned_cols=74 Identities=9% Similarity=0.068 Sum_probs=50.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC--CCCCCchhhHHHHHHHH
Q psy1701 170 HNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDP--NKSWYRPRTIKNFIIIL 243 (270)
Q Consensus 170 ~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~--~~~~~~~~~~~~~~i~~ 243 (270)
.+.+|...|......+.++.+..-+.+.++.+.+.+.+..+-+..++++.+...+++ +..-++|.....|...+
T Consensus 323 ~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~ 398 (416)
T COG1914 323 LWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVI 398 (416)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHH
Confidence 445677788777777666666555999999999999988888888888887766541 22234555555544443
No 54
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=78.53 E-value=7.9 Score=34.47 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=70.0
Q ss_pred CCCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccc----c--
Q psy1701 49 APFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSI----T-- 122 (270)
Q Consensus 49 ~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~i----l-- 122 (270)
.++.+...+.-...+.|.+.....-+...+++|++.+| ....+.....++|...-...-..||.+.-+.. .
T Consensus 172 ~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k---~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~ 248 (320)
T PF03845_consen 172 SGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKK---SLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLEL 248 (320)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHH
Confidence 45667778877788888888777778888888876555 77888888888888877777777885422211 1
Q ss_pred -ccC--CC--chHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHh
Q psy1701 123 -LNL--PK--DPFSESIKILVALSILFTYGLQFGVPSEIVWERIK 162 (270)
Q Consensus 123 -~n~--~~--~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~ 162 (270)
+.. ++ +.+..+.-.......+....+.++...+.+.+.++
T Consensus 249 ~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~ 293 (320)
T PF03845_consen 249 ARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFK 293 (320)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111 10 01222222333445556666677777777766554
No 55
>KOG1289|consensus
Probab=72.91 E-value=94 Score=30.08 Aligned_cols=56 Identities=9% Similarity=0.022 Sum_probs=33.1
Q ss_pred HHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccc
Q psy1701 62 LFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKG 119 (270)
Q Consensus 62 ~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~ 119 (270)
...+.|--....+-.|-+|+++- -++....+..+..++=..+-+.-..+-++|.+.
T Consensus 262 ~wt~sGyDa~~H~aEE~~nAsk~--aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~ 317 (550)
T KOG1289|consen 262 AWTMSGYDAAAHMAEETKNASKA--APRGIISSIAIGFILGWIIIIGIAYTIPDDLDA 317 (550)
T ss_pred eeEEeccCchHHHHHHhcchhhh--ccHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 33444445556677788888842 233666666666666555555555566655433
No 56
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=63.83 E-value=1.3e+02 Score=28.31 Aligned_cols=39 Identities=5% Similarity=0.038 Sum_probs=26.3
Q ss_pred CCCCCchhHHHHHHHHHhhcccccccccc-cccCCCCCCc
Q psy1701 48 VAPFTQFPLFFSTVLFAMEGIGTVLPIEN-SMKKPGHFLG 86 (270)
Q Consensus 48 ~~~~~~~~~~~gi~~faf~~~~~~~~i~~-~m~~p~~~~~ 86 (270)
..|++-+..++|...|+..--.-+.-.|+ -++|+++..+
T Consensus 210 l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~ 249 (439)
T COG0733 210 LTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVS 249 (439)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhh
Confidence 34577788999999998865544444444 5677776655
No 57
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=63.56 E-value=93 Score=28.61 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=13.7
Q ss_pred hhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 196 GPIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 196 ~~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
+.+.++..-..+...+-.+|+++ +.++|++
T Consensus 365 ~~i~~~~~~~~~~~~~~~~~pl~-lgl~w~r 394 (407)
T TIGR00813 365 GQVLQYVQEAFGGLGAPFLPVFL-LGIFWKR 394 (407)
T ss_pred chHHHHHHHHHHHhcchHHHHHH-HHHhcCc
Confidence 44555543333333334556644 4555553
No 58
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=63.49 E-value=1.4e+02 Score=28.31 Aligned_cols=150 Identities=13% Similarity=0.057 Sum_probs=76.9
Q ss_pred CCCCCchhHHHHHHHHHhhc-ccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcc-cccccccC
Q psy1701 48 VAPFTQFPLFFSTVLFAMEG-IGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDT-KGSITLNL 125 (270)
Q Consensus 48 ~~~~~~~~~~~gi~~faf~~-~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~-~~~il~n~ 125 (270)
..++.++..+++...=.+.. -+-.....+-+|+|+. ++.......+......+-..+|...-.+-|+.- ..++...+
T Consensus 189 ~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~-~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~ 267 (442)
T COG1457 189 PTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTP-SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGL 267 (442)
T ss_pred CCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhc
Confidence 44566666666543333322 2233445555676664 332334555666667777788888887777654 12222222
Q ss_pred CCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHH----hcCCchhhHHH
Q psy1701 126 PKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAA----IIPNLGPIISL 201 (270)
Q Consensus 126 ~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi----~ip~~~~v~~l 201 (270)
+ .+...+.+...++...+=-..+|...-...+..++ .++..+.+...+. ..+++|+ +..+++.++.+
T Consensus 268 G--~~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~-----l~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~ 338 (442)
T COG1457 268 G--GFGLPAILILVLGTVTTNANNLYSAGLSFANIIPK-----LSKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLL 338 (442)
T ss_pred c--cHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhh-----hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 2 25556665666666555555555554333322221 2223333333332 3334444 35567777777
Q ss_pred hhhhHH
Q psy1701 202 VGAICF 207 (270)
Q Consensus 202 vGs~~~ 207 (270)
+|+...
T Consensus 339 i~~~i~ 344 (442)
T COG1457 339 LGYFIP 344 (442)
T ss_pred HHHHHH
Confidence 777653
No 59
>PRK00701 manganese transport protein MntH; Reviewed
Probab=58.27 E-value=1.7e+02 Score=27.62 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhc--CCchhhHHHhhhhHHHHHHHHHHHHHHH
Q psy1701 170 HNMGYYIMRGLMIIGTVLVAAII--PNLGPIISLVGAICFSMLGLFCPAVIDY 220 (270)
Q Consensus 170 ~~~~~~~~r~~~~~~~~~lAi~i--p~~~~v~~lvGs~~~~~l~filP~l~~l 220 (270)
.+.+|...|.+.+..+.++...- .+...++- .+.....+.+|.....
T Consensus 345 ~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli----~aqv~~~i~LP~~~~~ 393 (439)
T PRK00701 345 LWVRRLITRGLAMVPALIVILLGGELDPTRLLV----LSQVVLSFGLPFALIP 393 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34456666666555555544433 22233332 4455566666764433
No 60
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=58.01 E-value=98 Score=28.95 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=31.4
Q ss_pred hcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHh----hcCcc
Q psy1701 66 EGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLK----YGEDT 117 (270)
Q Consensus 66 ~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~----fG~~~ 117 (270)
..-.+.+..-+.+|+|++-.+ ....+..........+|..+-.. +|+..
T Consensus 222 s~~~~~~DysRy~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 222 TWATNAPDFTRFGKSKKTAIW---GQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred HHHcCchhhhhhcCCccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 334566777778887665333 35566666777777777766655 77654
No 61
>PRK10484 putative transporter; Provisional
Probab=57.35 E-value=1.8e+02 Score=27.85 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=8.8
Q ss_pred HHHhhHHHHhhcC
Q psy1701 103 GMVGYCGYLKYGE 115 (270)
Q Consensus 103 ~~~g~~gY~~fG~ 115 (270)
...|..++..|++
T Consensus 295 ~~~G~~a~~~~p~ 307 (523)
T PRK10484 295 VLPGIIAFHLYGD 307 (523)
T ss_pred HHHHHHHHHHhcc
Confidence 3457777777765
No 62
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=56.53 E-value=1.8e+02 Score=27.41 Aligned_cols=33 Identities=21% Similarity=0.089 Sum_probs=15.4
Q ss_pred cccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHh
Q psy1701 77 SMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLK 112 (270)
Q Consensus 77 ~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~ 112 (270)
..|++++.+| ....+......++....+.|..+
T Consensus 261 aak~~~~a~~---~~~~~~~~~~~~~~~~~~~G~~a 293 (471)
T TIGR02119 261 SYKDSKAMHR---AMIIGTIVVGIIMLGMHLAGVLG 293 (471)
T ss_pred hcCCHHHHhh---hHhHHHHHHHHHHHHHHHHHHhh
Confidence 3445544344 44455444455554444445333
No 63
>KOG2082|consensus
Probab=56.02 E-value=2.4e+02 Score=28.81 Aligned_cols=199 Identities=12% Similarity=0.086 Sum_probs=95.6
Q ss_pred CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhh-HHH--------HhhcCccccccc
Q psy1701 52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGY-CGY--------LKYGEDTKGSIT 122 (270)
Q Consensus 52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~-~gY--------~~fG~~~~~~il 122 (270)
+.+...+|++.=|-.|...=-.--.++|+|++ ..+.-...|......+|+...+ +|- -.||+.+.++..
T Consensus 410 tSFtlLvgIfFPsVTGImaGSNrSGDLkDaQk--SIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lV 487 (1075)
T KOG2082|consen 410 TSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQK--SIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLV 487 (1075)
T ss_pred hhHHHHHHhhccccceeeecCCCCccccchhh--cCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEE
Confidence 34666677776665655544455567888874 2222355666666677765432 221 246777766553
Q ss_pred ---ccCCCchHHHHHHH----HHHHHHHHHhhcchh-hHHHHHHHHHhh--hCCCCCcchhHHHHHHHHHHHHHHHHHhc
Q psy1701 123 ---LNLPKDPFSESIKI----LVALSILFTYGLQFG-VPSEIVWERIKH--RVPIPRHNMGYYIMRGLMIIGTVLVAAII 192 (270)
Q Consensus 123 ---~n~~~~~~~~~~~i----~~~i~~~~s~pl~~~-p~~~~l~~~l~~--~~~~~~~~~~~~~~r~~~~~~~~~lAi~i 192 (270)
...|+.|...+..+ ...+..+++-|=.+. .++|-+.+.+.. +...+....+-+ .+..+.+-+++.+
T Consensus 488 va~laWPsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aL----lLT~~Ice~gILi 563 (1075)
T KOG2082|consen 488 VATLAWPSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWAL----LLTAIICECGILI 563 (1075)
T ss_pred EEEecCCCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHH----HHHHHHHHhhhee
Confidence 34466555444333 233344555552221 223333333211 111111222222 3333444556666
Q ss_pred CCchhhHHHhhhhHHHHHHHHH---HHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHH-----HhHHHHHHHHHHHH
Q psy1701 193 PNLGPIISLVGAICFSMLGLFC---PAVIDYVTFYDPNKSWYRPRTIKNFIIILISLG-----ALISGTYSSIEEII 261 (270)
Q Consensus 193 p~~~~v~~lvGs~~~~~l~fil---P~l~~l~~~~~~~~~~~~~~~~~~~~i~~~Gv~-----~~v~gt~~~i~~li 261 (270)
-+++.+--++-=+ ..+||.+ -|..+-.++-+ ++++.-|..+|.+..+|.. +++.+.|+++....
T Consensus 564 gslD~iApilsmF--FLMCY~fVNLaCavqtLLrtP---nWRPRfkyyHW~LSflG~sLC~~iMF~~SWyyAlvAm~ 635 (1075)
T KOG2082|consen 564 GSLDLIAPILSMF--FLMCYLFVNLACAVQTLLRTP---NWRPRFKYYHWSLSFLGASLCLAIMFISSWYYALVAML 635 (1075)
T ss_pred echhHHHHHHHHH--HHHHHHHHhHHHHHHHHhcCC---CCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555333 2333332 23333333322 2332234677777777754 35556677766543
No 64
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=55.36 E-value=1.9e+02 Score=27.43 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=8.0
Q ss_pred HHHHhhHHHHhhcC
Q psy1701 102 YGMVGYCGYLKYGE 115 (270)
Q Consensus 102 y~~~g~~gY~~fG~ 115 (270)
...+|+.|...+.+
T Consensus 281 ~~~~g~~g~~~~~~ 294 (487)
T TIGR02121 281 AIAVGLTGIAYFNK 294 (487)
T ss_pred HHHHHHHHHHHhcc
Confidence 45566666665543
No 65
>PRK12488 acetate permease; Provisional
Probab=55.21 E-value=2.1e+02 Score=27.78 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 179 GLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 179 ~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
+++-.++.++|...|+.+ +..+++-..+...+..+|++ .+.++|++
T Consensus 410 vvvgv~a~~~a~~~~~~~-i~~l~~~~~~~~a~~~~p~l-llgl~wkr 455 (549)
T PRK12488 410 LGIGLLAVVLGLMFESQN-IAFLSGLVLAIAASVNFPVL-FLSMFWKG 455 (549)
T ss_pred HHHHHHHHHHHHccCCCc-HHHHHHHHHHHHHHHHHHHH-HHHHHhCC
Confidence 334445556676666532 34444433333345566764 45666664
No 66
>KOG4812|consensus
Probab=51.23 E-value=23 Score=30.28 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHh---------hhhHHHHHHHHHHHHHHHHHhcCCCC--CCCchhhHHHHHHHHHHHH
Q psy1701 179 GLMIIGTVLVAAIIPNLGPIISLV---------GAICFSMLGLFCPAVIDYVTFYDPNK--SWYRPRTIKNFIIILISLG 247 (270)
Q Consensus 179 ~~~~~~~~~lAi~ip~~~~v~~lv---------Gs~~~~~l~filP~l~~l~~~~~~~~--~~~~~~~~~~~~i~~~Gv~ 247 (270)
-......+++|...+-++.++..+ ||.++.-|+++= |..+.+..+. +-...++++.|+++++|++
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~l 235 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLL 235 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHH
Confidence 344445555666666555555543 666666666654 3333322111 1111246788999999999
Q ss_pred HhHHHHH--HHHHHHHHHhCC
Q psy1701 248 ALISGTY--SSIEEIIAFYAI 266 (270)
Q Consensus 248 ~~v~gt~--~~i~~li~~~~~ 266 (270)
.+.-|++ ..++++-+.+.+
T Consensus 236 l~lr~~i~YikVrrm~~~~s~ 256 (262)
T KOG4812|consen 236 LFLRGFINYIKVRRMEEKYSN 256 (262)
T ss_pred HHHHHHHhHHHHhhHHHHHhc
Confidence 9999985 455565555543
No 67
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=48.56 E-value=53 Score=27.33 Aligned_cols=68 Identities=12% Similarity=-0.073 Sum_probs=49.6
Q ss_pred chhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCCC---C----CCchhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1701 195 LGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNK---S----WYRPRTIKNFIIILISLGALISGTYSSIEEIIA 262 (270)
Q Consensus 195 ~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~~---~----~~~~~~~~~~~i~~~Gv~~~v~gt~~~i~~li~ 262 (270)
++.-.-..|++.+.-+..++|+...+...+++-- + -+|-.-....+...+|++++..+..-|...+.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445556788888888999999999998876210 0 134455667778888888888888888887776
No 68
>PRK11375 allantoin permease; Provisional
Probab=46.43 E-value=2.7e+02 Score=26.54 Aligned_cols=18 Identities=11% Similarity=0.423 Sum_probs=11.7
Q ss_pred chhhHHHhhhhHHHHHHH
Q psy1701 195 LGPIISLVGAICFSMLGL 212 (270)
Q Consensus 195 ~~~v~~lvGs~~~~~l~f 212 (270)
+..++++.|++.+....-
T Consensus 373 f~~FL~~lg~~l~Pi~gI 390 (484)
T PRK11375 373 IYLFLDIIGGMLGPVIGV 390 (484)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777776444433
No 69
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=44.58 E-value=2.8e+02 Score=26.21 Aligned_cols=30 Identities=17% Similarity=-0.013 Sum_probs=15.6
Q ss_pred ccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHH
Q psy1701 78 MKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGY 110 (270)
Q Consensus 78 m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY 110 (270)
.|++++.+| ...++......++....+.|.
T Consensus 263 aks~~~a~~---~~~~~~~~~~~~~~~~~~~G~ 292 (483)
T PRK09442 263 YKDSKALHR---GIIIGTIVVGFLMFGMHLAGA 292 (483)
T ss_pred cCCHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 455554444 555555555555555555553
No 70
>PRK11383 hypothetical protein; Provisional
Probab=43.45 E-value=1.6e+02 Score=23.14 Aligned_cols=85 Identities=13% Similarity=0.014 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCC--chhhHHHHHHHHHHHHHhHH
Q psy1701 174 YYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWY--RPRTIKNFIIILISLGALIS 251 (270)
Q Consensus 174 ~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~--~~~~~~~~~i~~~Gv~~~v~ 251 (270)
..+....+.....+..+..=|=...++==|=.....+.=.++++-+-|..+++..+.+ ..-...+|+..++++....+
T Consensus 13 ~~~sw~al~~g~~~y~iGLwnA~~~LsEKGyY~~vl~lglF~avs~QK~vRD~~egi~vt~~f~~~cw~a~l~~i~LL~i 92 (145)
T PRK11383 13 SIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMV 92 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333444555566777777777888888887766533433 23355778888889999999
Q ss_pred HHHHHHH
Q psy1701 252 GTYSSIE 258 (270)
Q Consensus 252 gt~~~i~ 258 (270)
|.+++=.
T Consensus 93 GLwNA~l 99 (145)
T PRK11383 93 GLWNATL 99 (145)
T ss_pred HHhcCCc
Confidence 9886543
No 71
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=41.97 E-value=3.1e+02 Score=26.08 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=10.9
Q ss_pred HHHHHHHhhHHHHhhcC
Q psy1701 99 ISFYGMVGYCGYLKYGE 115 (270)
Q Consensus 99 ~~~y~~~g~~gY~~fG~ 115 (270)
...-..+|+.|+..+.+
T Consensus 282 ~~~~~~ig~~~~~~~~~ 298 (502)
T PRK15419 282 LAGAVAVGFFGIAYFNE 298 (502)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34455777888877753
No 72
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=39.28 E-value=1.5e+02 Score=24.94 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q psy1701 128 DPFSESIKILVALSILFTYGLQFGVPSEIVWERI 161 (270)
Q Consensus 128 ~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l 161 (270)
+.+..-.|+....+...+.|...+-.-..+.+.+
T Consensus 55 e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgL 88 (215)
T TIGR00945 55 EPFFTYIKLSLIVGIILSSPVILYQIWAFILPGL 88 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4788889999999999999987765544444333
No 73
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=37.96 E-value=86 Score=28.74 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 183 IGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 183 ~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
++..+++...|+.+ +.++..-..+...+-..|+++ +.++||+
T Consensus 352 ~i~~~la~~~~~~~-i~~~~~~~~~~~~~~~~~~~~-~gl~wkr 393 (406)
T PF00474_consen 352 IIAILLALFFPDSG-IIDLILFAFGILAAPFFPPLL-LGLYWKR 393 (406)
T ss_dssp HHHHHHGGGGGGSS-HHHHHHHHHTTTHHHHHHHHH-HHHH-TT
T ss_pred HhHHHHHhccccch-HHHHHHHHHHHHHHHHHHHHH-HhhccCC
Confidence 44455566666654 455544333333333455543 3445553
No 74
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=37.40 E-value=1.7e+02 Score=23.34 Aligned_cols=61 Identities=26% Similarity=0.283 Sum_probs=38.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1701 200 SLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIA 262 (270)
Q Consensus 200 ~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~i~~~Gv~~~v~gt~~~i~~li~ 262 (270)
+..|+-.+....|..|-+.+.. ..+..++.+..+ -.-.+-+++|+..+++|+..+-+...+
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~y-k~~~~~gv~~~~-~~pflSf~lG~~~m~~~~~~~~k~~y~ 93 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRY-KTGAIKGVPVPR-QKPFLSFLLGLGAMMAGSQLAGKYQYN 93 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH-hcccccCCcCCc-cCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788889999877654 111111211111 334556889999999999877776664
No 75
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=36.96 E-value=3.3e+02 Score=24.93 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=26.0
Q ss_pred cccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcC
Q psy1701 71 VLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGE 115 (270)
Q Consensus 71 ~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~ 115 (270)
.+...+-.|+|++-.. ....+..+...+-..+|...-.+.++
T Consensus 192 ~~DysRy~k~~~~~~~---~~~~G~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 192 IADYTRFARNPRHVFL---GTVLGYFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred ccchhhhcCCCcceeh---HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4555555665554222 45556677777777888766666654
No 76
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=35.09 E-value=4.2e+02 Score=25.57 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=17.8
Q ss_pred HHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 185 TVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 185 ~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
...+|...|+ .+.++..-..+....-.+|+++ +.++|++
T Consensus 427 ~~~~a~~~~~--~i~~l~~~~~~~~~~~~~~~~l-lgl~w~r 465 (552)
T TIGR03648 427 AGYFGLNPPG--FIAQVVAFAFGLAAASFFPALV-LGIFWKR 465 (552)
T ss_pred HHHHHHcccc--HHHHHHHHHHHHHHHHHHHHHH-HHHHcCC
Confidence 3344544443 3444433333333355566544 5566654
No 77
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=32.41 E-value=4.7e+02 Score=25.30 Aligned_cols=45 Identities=11% Similarity=0.140 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 180 LMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 180 ~~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
++-.++.++|...|+.+ +..+++-..+...+-..|.+ .+.++|++
T Consensus 411 v~g~ia~~~a~~~~~~~-i~~l~~~~~~~~a~~~~p~l-llgl~Wkr 455 (549)
T TIGR02711 411 ILGVIAIGLGILFENQN-IAFMVGLAFSIAASCNFPII-LLSMYWSK 455 (549)
T ss_pred HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHH-HHHHhcCC
Confidence 33444556676656532 23333322222222355664 46677764
No 78
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.41 E-value=1e+02 Score=23.57 Aligned_cols=28 Identities=21% Similarity=0.065 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhCC
Q psy1701 239 FIIILISLGALISGTYSSIEEIIAFYAI 266 (270)
Q Consensus 239 ~~i~~~Gv~~~v~gt~~~i~~li~~~~~ 266 (270)
+..+++|+.++++|+..-+.=+++...+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666777777777766555555544433
No 79
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=28.94 E-value=53 Score=20.47 Aligned_cols=27 Identities=19% Similarity=0.528 Sum_probs=19.6
Q ss_pred HhhHHHHHHHHHHHHHhhHHHHhhcCc
Q psy1701 90 VLNIAMAVVISFYGMVGYCGYLKYGED 116 (270)
Q Consensus 90 v~~~s~~~~~~~y~~~g~~gY~~fG~~ 116 (270)
+...++.+..++-.++|..-|-+||..
T Consensus 7 A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 7 ALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 455666777777777777788888854
No 80
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=28.36 E-value=61 Score=19.96 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhcCc
Q psy1701 91 LNIAMAVVISFYGMVGYCGYLKYGED 116 (270)
Q Consensus 91 ~~~s~~~~~~~y~~~g~~gY~~fG~~ 116 (270)
...+..+..++-.++|...|.+||..
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 34556667777777888888888854
No 81
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=27.20 E-value=2e+02 Score=24.57 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q psy1701 128 DPFSESIKILVALSILFTYGLQFGVPSEIVWERI 161 (270)
Q Consensus 128 ~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l 161 (270)
+.+..-.|+....++..+.|...+-.-..+.+.+
T Consensus 63 e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgL 96 (237)
T TIGR01912 63 AALELRIKSAFFIGLLLASPVLAYEAYRFIKPAL 96 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4788889999999999999987765555444443
No 82
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=27.01 E-value=44 Score=21.96 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=21.4
Q ss_pred ccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhc
Q psy1701 78 MKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYG 114 (270)
Q Consensus 78 m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG 114 (270)
|+-|.+.+|-.--...++.+++++..++|++|+-+-|
T Consensus 1 m~l~~kirrdwhyyafa~glifilngvvgllgfeakg 37 (70)
T PF10953_consen 1 MKLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKG 37 (70)
T ss_pred CCcchHhhhhhHHHHHHHHHHHHhhchhhhceecccC
Confidence 3444444442223556677777777777777764443
No 83
>PHA03048 IMV membrane protein; Provisional
Probab=26.23 E-value=2.5e+02 Score=20.18 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCccccc
Q psy1701 53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGS 120 (270)
Q Consensus 53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~ 120 (270)
+-....|+...+-.|.....+...+ +|+. ..|+ ++. .+..+.-+-+.+|.+-|-.||....++
T Consensus 12 S~vli~GIiLL~~aCIfAfidfsK~--k~~~-~~wR-als-ii~FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 12 STALIGGIILLAASCIFAFVDFSKN--KATV-TVWR-ALS-GIAFVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhcC--CCcc-hhHH-HHH-HHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 3445678888888888877777777 4543 3332 332 233344455688999999999665553
No 84
>CHL00020 psbN photosystem II protein N
Probab=26.23 E-value=51 Score=20.26 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=19.3
Q ss_pred HhhHHHHHHHHHHHHHhhHHHHhhcCc
Q psy1701 90 VLNIAMAVVISFYGMVGYCGYLKYGED 116 (270)
Q Consensus 90 v~~~s~~~~~~~y~~~g~~gY~~fG~~ 116 (270)
+...+..+..++..++|..-|-+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 345566677777777777788888854
No 85
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=24.85 E-value=1.8e+02 Score=18.78 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhcCccc
Q psy1701 91 LNIAMAVVISFYGMVGYCGYLKYGEDTK 118 (270)
Q Consensus 91 ~~~s~~~~~~~y~~~g~~gY~~fG~~~~ 118 (270)
+..-..+..++|+++|+.-+..+.++.+
T Consensus 25 Viik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 25 VIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 4566677899999999877766655543
No 86
>KOG1288|consensus
Probab=23.65 E-value=7.9e+02 Score=25.05 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhH
Q psy1701 53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYC 108 (270)
Q Consensus 53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~ 108 (270)
++-..||++.=+=.|.-.=-..-.|+|+|++ ..++-...+....+.+|.++.++
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PSk--SIP~GTl~ava~Tf~~Yvl~~fl 348 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPSK--SIPKGTLSAVAFTFFVYVLVIFL 348 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCccc--cCCccchHHHHHHHHHHHHHHHH
Confidence 4555566555444444444566789999984 22336778888899999888654
No 87
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=23.36 E-value=5.5e+02 Score=24.29 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=17.0
Q ss_pred chhhHHHhhhhHHHHHHHHHHHHHHHHH
Q psy1701 195 LGPIISLVGAICFSMLGLFCPAVIDYVT 222 (270)
Q Consensus 195 ~~~v~~lvGs~~~~~l~filP~l~~l~~ 222 (270)
++.++++ +...+.+++|...-+.+
T Consensus 333 ~~~II~~----s~PiL~~iYP~~IvLil 356 (439)
T PRK15433 333 LSQLIQI----SVPVLTAIYPPCIALVV 356 (439)
T ss_pred HHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 5555544 47889999999776654
No 88
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=22.06 E-value=3.1e+02 Score=19.68 Aligned_cols=59 Identities=8% Similarity=0.130 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcc
Q psy1701 56 LFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDT 117 (270)
Q Consensus 56 ~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~ 117 (270)
...|+...+-.|.....+...+=.+|++ ..|+ ++.. ...+.-+-+.+|.+.|-.||...
T Consensus 15 li~GIiLL~~ACIFAfidFSK~~s~~~~-~~wR-alSi-i~FIlG~vl~lGilifs~y~~C~ 73 (91)
T PHA02680 15 LICGVLLLTAACVFAFVDFSKNTSNVTD-YVWR-ALSV-TCFIVGAVLLLGLFVFSMYRKCS 73 (91)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCcc-hhHH-HHHH-HHHHHHHHHHHHHHHHHHhcccC
Confidence 4567777777777777787777667776 3333 3322 22333445677899999998433
No 89
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=21.76 E-value=2.6e+02 Score=22.48 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=32.9
Q ss_pred HhhcccccccccccccCCCCCCchhhHhhHHHH-HHHHHHHHHhhHHHHhhcCc
Q psy1701 64 AMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMA-VVISFYGMVGYCGYLKYGED 116 (270)
Q Consensus 64 af~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~-~~~~~y~~~g~~gY~~fG~~ 116 (270)
++-..++.+.-++++|+|+ +... ..+.. +=+++|...|..+|+.+.++
T Consensus 23 s~~~~~~~~~wy~~L~kP~-w~pp----~~~f~~vWtvLy~l~~iSa~lvW~~~ 71 (161)
T COG3476 23 SFFISSRDPNWYNNLKKPF-WLPP----EWAFPPVWTVLYALIGISAYLVWEKG 71 (161)
T ss_pred HHHhccccHHHHHhccCCC-CCCh----HHHhhHHHHHHHHHHHHHHHHHHHHc
Confidence 3344555666889999998 3431 22232 34789999999999999654
No 90
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=21.03 E-value=6.2e+02 Score=22.83 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=32.5
Q ss_pred CCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccC
Q psy1701 84 FLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNL 125 (270)
Q Consensus 84 ~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~ 125 (270)
+....+++.++...+.-.-+.+..+||.......++++..++
T Consensus 43 ~~~T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l 84 (340)
T PF12794_consen 43 FSHTPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVAL 84 (340)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 455567888999999999999999999988765666655544
No 91
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=20.98 E-value=6e+02 Score=22.60 Aligned_cols=26 Identities=4% Similarity=0.121 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHh
Q psy1701 239 FIIILISLGALISGTYSSIEEIIAFY 264 (270)
Q Consensus 239 ~~i~~~Gv~~~v~gt~~~i~~li~~~ 264 (270)
..+.+.|++.+.+|.+.+++.-.+..
T Consensus 281 ~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 281 LLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567778888888888888777654
No 92
>PRK00523 hypothetical protein; Provisional
Probab=20.12 E-value=2.9e+02 Score=19.05 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=12.3
Q ss_pred HHHhHHHHHHHHHHHHHHhCCCC
Q psy1701 246 LGALISGTYSSIEEIIAFYAINP 268 (270)
Q Consensus 246 v~~~v~gt~~~i~~li~~~~~~~ 268 (270)
+++.+.|.+.+-+..-+.+++++
T Consensus 16 i~G~~~Gffiark~~~k~l~~NP 38 (72)
T PRK00523 16 IVGGIIGYFVSKKMFKKQIRENP 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCc
Confidence 34445555555555555665554
Done!