Query psy1701
Match_columns 270
No_of_seqs 143 out of 1431
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 19:28:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 98.0 0.00051 1.8E-08 63.7 18.5 166 54-225 203-395 (511)
2 3l1l_A Arginine/agmatine antip 97.9 0.00024 8.1E-09 64.7 14.9 171 51-227 190-380 (445)
3 3gia_A Uncharacterized protein 97.3 0.00053 1.8E-08 62.4 8.4 169 51-226 187-369 (444)
4 4b4a_A TATC, SEC-independent p 64.8 37 0.0013 28.1 8.9 95 127-223 58-175 (249)
5 3dh4_A Sodium/glucose cotransp 42.4 1.3E+02 0.0045 27.5 9.6 43 183-226 379-421 (530)
6 2xq2_A Sodium/glucose cotransp 35.4 2.7E+02 0.0093 25.7 11.7 43 183-226 408-450 (593)
7 1afo_A Glycophorin A; integral 24.4 1.1E+02 0.0037 17.6 4.4 26 239-264 12-37 (40)
8 4b4a_A TATC, SEC-independent p 21.3 3.4E+02 0.012 22.2 10.8 61 129-201 149-209 (249)
9 2jln_A MHP1; hydantoin, transp 20.5 4.4E+02 0.015 23.7 9.0 16 68-83 224-239 (501)
10 3tx3_A Uncharacterized protein 19.5 3.7E+02 0.013 21.9 11.1 34 77-114 23-56 (249)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.97 E-value=0.00051 Score=63.67 Aligned_cols=166 Identities=13% Similarity=0.118 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCccc---cc-------ccc
Q psy1701 54 FPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTK---GS-------ITL 123 (270)
Q Consensus 54 ~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~---~~-------il~ 123 (270)
...++...+|+|.|.-.......|+|||++ ..++.+..++.++.++|....+......+++.. +. +..
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k--~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGR--DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMS 280 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTT--THHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCccc--chhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHH
Confidence 445677889999999999999999999984 334589999999999999988766665554321 11 122
Q ss_pred cCC--CchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh-hCCC------CCcchhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 124 NLP--KDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH-RVPI------PRHNMGYYIMRGLMIIGTVLVAAIIPN 194 (270)
Q Consensus 124 n~~--~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~-~~~~------~~~~~~~~~~r~~~~~~~~~lAi~ip~ 194 (270)
+.+ ..+...+..+...+..+.+.--.+....+.++..-++ ..|+ +++.+.+-+.-. .....++.+.+++
T Consensus 281 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~ai~~~--~~~~~l~~~~~~~ 358 (511)
T 4djk_A 281 HVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQ--LVITSIALIILTN 358 (511)
T ss_dssp SSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCSSSCCCCCSSSCCCHHHHHH--HHHHHHHHHHHHS
T ss_pred HhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccHHHHhcCCCCCcHHHHHHH--HHHHHHHHHHhcc
Confidence 333 2345555555555555544333333333444333221 1111 122222222211 1122223334454
Q ss_pred --------chhhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701 195 --------LGPIISLVGAICFSMLGLFCPAVIDYVTFYD 225 (270)
Q Consensus 195 --------~~~v~~lvGs~~~~~l~filP~l~~l~~~~~ 225 (270)
++.+.++.+ .+..+.|.+|.+.+++.+++
T Consensus 359 ~~~~~~~~f~~l~~~~~--~~~~~~y~~~~~~~~~~r~~ 395 (511)
T 4djk_A 359 TGGGNNMSFLIALALTV--VIYLCAYFMLFIGYIVLVLK 395 (511)
T ss_dssp SSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 344444432 24677788888877776654
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=97.91 E-value=0.00024 Score=64.70 Aligned_cols=171 Identities=9% Similarity=-0.015 Sum_probs=93.7
Q ss_pred CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCccc----cccc---c
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTK----GSIT---L 123 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~----~~il---~ 123 (270)
+.++..++....|+|.|.........|+|||++ ..++....+.....++|...........+.+.- ++.. +
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r--~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 267 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR--NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAAR 267 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc--cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHH
Confidence 567888899999999999999999999999963 234488999999999999998776666654321 1110 1
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhh-CCC------CCcchhHHHHHHHHHHHHHHHHH--hc--
Q psy1701 124 NLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHR-VPI------PRHNMGYYIMRGLMIIGTVLVAA--II-- 192 (270)
Q Consensus 124 n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~-~~~------~~~~~~~~~~r~~~~~~~~~lAi--~i-- 192 (270)
+...++...+..+...+..+.+.--..+...+.+...-+++ .|+ +++.+.+-..-...+ +.+++. ..
T Consensus 268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~--~~~~~~~~~~~~ 345 (445)
T 3l1l_A 268 MALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGIL--MTIFQLSSISPN 345 (445)
T ss_dssp HHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHH--HHHHHHSTTSHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHH--HHHHHHHHHccc
Confidence 10011233333333333333333223333444444332211 111 122222222221111 222222 12
Q ss_pred --CCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCC
Q psy1701 193 --PNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPN 227 (270)
Q Consensus 193 --p~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~ 227 (270)
..++.+.++.+ ....+.|.++++.+++.+++++
T Consensus 346 ~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 346 ATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp HHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence 23555555543 3467899999999999987653
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.34 E-value=0.00053 Score=62.39 Aligned_cols=169 Identities=12% Similarity=0.094 Sum_probs=91.4
Q ss_pred CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-cc---c-cccccC
Q psy1701 51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-TK---G-SITLNL 125 (270)
Q Consensus 51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-~~---~-~il~n~ 125 (270)
+.++..++....|+|.|.........|+|||++ ..++....+...+.++|...........+.+ .. + .+....
T Consensus 187 ~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r--~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 264 (444)
T 3gia_A 187 VSGMIFASAIFFLSYMGFGVITNASEHIENPKK--NVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAA 264 (444)
T ss_dssp HHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc--chhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHH
Confidence 345667778888999999999999999999974 2344889999999999998876554444321 10 0 000000
Q ss_pred C---CchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhh-CCC----C-CcchhHHHHHHHHHHHHHHHHHhcCCch
Q psy1701 126 P---KDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHR-VPI----P-RHNMGYYIMRGLMIIGTVLVAAIIPNLG 196 (270)
Q Consensus 126 ~---~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~-~~~----~-~~~~~~~~~r~~~~~~~~~lAi~ip~~~ 196 (270)
. .++...+..+...+..+.+.--.++...+.+...-+++ .|+ . ++.+.+-. .....++.+++ .+.+++
T Consensus 265 ~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~~~P~~a~--~~~~~~~~~~~-~~~~~~ 341 (444)
T 3gia_A 265 KPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGL--YITSALGVLFA-LLFNME 341 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSCCSCTHHH--HHHHHHHHHHH-HHSCHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCCCCCcHHH--HHHHHHHHHHH-HHcCHH
Confidence 0 01112223333333333333333333444444332221 121 1 11122211 11111222222 234688
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 197 PIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 197 ~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
.+.++.+ .+..+.|.++++.+++.++++
T Consensus 342 ~l~~~~~--~~~~~~~~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 342 GVASITS--AVFMVIYLFVILSHYILIDEV 369 (444)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHhhhcC
Confidence 8777743 357889999999988887654
No 4
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=64.79 E-value=37 Score=28.14 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=54.1
Q ss_pred CchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhc--------------
Q psy1701 127 KDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAII-------------- 192 (270)
Q Consensus 127 ~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~i-------------- 192 (270)
.+.+..-.|+....+++.+.|...+-.-..+.+.+.+ +||+...........+...-...|..+
T Consensus 58 ~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~--~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~ 135 (249)
T 4b4a_A 58 TEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYS--HEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGF 135 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSC--CCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4478888999999999999997665443333222211 223322233333333433333444321
Q ss_pred ------C--CchhhHHHhhhhH-HHHHHHHHHHHHHHHHh
Q psy1701 193 ------P--NLGPIISLVGAIC-FSMLGLFCPAVIDYVTF 223 (270)
Q Consensus 193 ------p--~~~~v~~lvGs~~-~~~l~filP~l~~l~~~ 223 (270)
| ++++-++++-... ..-++|-+|-++.+..+
T Consensus 136 ~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~ 175 (249)
T 4b4a_A 136 TQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQK 175 (249)
T ss_dssp TTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred hhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5555556554443 34578889998887665
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=42.36 E-value=1.3e+02 Score=27.46 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 183 IGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 183 ~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
+++..+|...++++.+++++-...+....-++|++ -+.++|++
T Consensus 379 i~a~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~-llgl~wkr 421 (530)
T 3dh4_A 379 IIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVF-LLGLFWKK 421 (530)
T ss_dssp HHHHHHGGGGGGCSCHHHHHHHHHTTTHHHHHHHH-HHHHHCTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHH-HHHHHhCC
Confidence 34444454445555566554433322222233333 34556654
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=35.36 E-value=2.7e+02 Score=25.73 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701 183 IGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDP 226 (270)
Q Consensus 183 ~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~ 226 (270)
+++.++|...++.+.+++++....+....-++|+++ +.++|++
T Consensus 408 ~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~l-lglfwkr 450 (593)
T 2xq2_A 408 IIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFL-LGLFWKK 450 (593)
T ss_dssp HHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHHH-HHHHCTT
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHHH-HHHHhCC
Confidence 334445544456667776655444333333344443 4555654
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=24.39 E-value=1.1e+02 Score=17.56 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHh
Q psy1701 239 FIIILISLGALISGTYSSIEEIIAFY 264 (270)
Q Consensus 239 ~~i~~~Gv~~~v~gt~~~i~~li~~~ 264 (270)
..++++|+..+++||...+.-.++..
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766555544443
No 8
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=21.33 E-value=3.4e+02 Score=22.18 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCCchhhHHH
Q psy1701 129 PFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISL 201 (270)
Q Consensus 129 ~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~l 201 (270)
.+..+.++...+.+.+-.|+...-.. .+. -. +....+---|.+++....+-|+..| |+++-
T Consensus 149 Yl~fv~~l~l~fGl~FelPvi~~~L~-----~~G-iv---~~~~l~~~Rr~~iv~~~v~aAiiTP---D~~sq 209 (249)
T 4b4a_A 149 YISFVLKLVVAFGIAFEMPIVLYVLQ-----KAG-VI---TPEQLASFRKYFIVIAFVIGAIIAP---DVSTQ 209 (249)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHH-----HTT-SS---CHHHHHHHHHHHHHHHHHHHHHHCS---SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HcC-Cc---CHHHHHHHhHHHHHHHHHHHHHHCC---cHHHH
Confidence 67778888888888887776543221 111 01 1111222234555555555667888 55544
No 9
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=20.55 E-value=4.4e+02 Score=23.73 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=10.6
Q ss_pred ccccccccccccCCCC
Q psy1701 68 IGTVLPIENSMKKPGH 83 (270)
Q Consensus 68 ~~~~~~i~~~m~~p~~ 83 (270)
..+.....+.+|+|++
T Consensus 224 ~~~~~DysRy~~~~~~ 239 (501)
T 2jln_A 224 VVSIHDIVKECKVDPN 239 (501)
T ss_dssp HTTTHHHHTTBCCCTT
T ss_pred HhccCcccccCCCCcc
Confidence 3556677777877664
No 10
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=19.47 E-value=3.7e+02 Score=21.92 Aligned_cols=34 Identities=6% Similarity=0.115 Sum_probs=20.0
Q ss_pred cccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhc
Q psy1701 77 SMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYG 114 (270)
Q Consensus 77 ~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG 114 (270)
.+.+|+ +++ .+.....+..++|.......+...+
T Consensus 23 ~i~~p~-lr~---~vl~Pllinl~L~~~~~~~~~~~~~ 56 (249)
T 3tx3_A 23 LIRTKG-LRR---YVVVPILTNLILFSLAFTWLYGEVD 56 (249)
T ss_dssp HHTSTT-THH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345664 455 6777777777776666443333333
Done!