Query psy1701
Match_columns 270
No_of_seqs 143 out of 1431
Neff 8.5
Searched_HMMs 13730
Date Fri Aug 16 19:28:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1701.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1701hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 12.6 3.5E+02 0.025 22.1 14.1 33 49-81 235-267 (509)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 11.2 1.8E+02 0.013 18.1 6.6 25 129-153 62-86 (103)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 10.7 1.3E+02 0.0096 17.1 3.3 41 90-131 7-48 (57)
4 d1h9aa1 c.2.1.3 (A:1-181,A:413 4.7 86 0.0063 22.8 0.3 31 194-224 3-33 (195)
5 d1rh5b_ f.23.28.1 (B:) Preprot 3.9 3.2E+02 0.023 15.4 2.4 16 98-113 30-45 (56)
6 d1ciya3 f.1.3.1 (A:33-255) del 3.2 3.6E+02 0.026 19.4 2.9 25 179-203 6-30 (223)
7 d1q90r_ f.23.12.1 (R:) ISP sub 2.9 4.2E+02 0.031 13.7 3.0 18 202-219 18-35 (39)
8 d1v54d_ f.23.1.1 (D:) Mitochon 2.8 6.3E+02 0.046 16.9 3.7 40 73-114 63-102 (144)
9 d1qkia1 c.2.1.3 (A:12-199,A:43 2.5 2.5E+02 0.018 20.3 1.1 26 199-224 23-48 (203)
10 d2axte1 f.23.38.1 (E:3-84) Cyt 2.2 5.8E+02 0.042 15.3 2.4 26 91-117 24-49 (82)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=12.59 E-value=3.5e+02 Score=22.12 Aligned_cols=33 Identities=6% Similarity=-0.097 Sum_probs=22.5
Q ss_pred CCCCchhHHHHHHHHHhhcccccccccccccCC
Q psy1701 49 APFTQFPLFFSTVLFAMEGIGTVLPIENSMKKP 81 (270)
Q Consensus 49 ~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p 81 (270)
.|.+-+..+.+...|+++.-.-....+.+..+.
T Consensus 235 ~~~~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~ 267 (509)
T d2a65a1 235 KDPGVWIAAVGQIFFTLSLGFGAIITYASYVRK 267 (509)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCT
T ss_pred cChHHHHHHHHHHhhhhcccCCceeeehhhccc
Confidence 344457899999999998765555566554433
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.16 E-value=1.8e+02 Score=18.12 Aligned_cols=25 Identities=8% Similarity=-0.113 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhhH
Q psy1701 129 PFSESIKILVALSILFTYGLQFGVP 153 (270)
Q Consensus 129 ~~~~~~~i~~~i~~~~s~pl~~~p~ 153 (270)
|.....|+...+.++.+..+...+.
T Consensus 62 P~t~~gr~~~~~~~~~Gi~~~~~~~ 86 (103)
T d1r3jc_ 62 PVTLWGRCVAVVVMVAGITSFGLVT 86 (103)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666665555554443333
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=10.69 E-value=1.3e+02 Score=17.13 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=23.9
Q ss_pred HhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccCCCc-hHH
Q psy1701 90 VLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKD-PFS 131 (270)
Q Consensus 90 v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~~~~-~~~ 131 (270)
.+..+..+..++-...+.+-|..=.+ .+++-+.++|+. |..
T Consensus 7 ~~~~~~~~~~i~i~~~s~~~y~~E~~-~~~~~f~sip~a~WWa 48 (57)
T d2h8pc1 7 AAGAATVLLVIVLLAGSYLAVLAERG-APGAQLITYPRALWWA 48 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-STTCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccccccchhhhhh
Confidence 44555555555556667777776543 344446777776 443
No 4
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=4.70 E-value=86 Score=22.76 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=24.9
Q ss_pred CchhhHHHhhhhHHHHHHHHHHHHHHHHHhc
Q psy1701 194 NLGPIISLVGAICFSMLGLFCPAVIDYVTFY 224 (270)
Q Consensus 194 ~~~~v~~lvGs~~~~~l~filP~l~~l~~~~ 224 (270)
....++-+.||++--..=-++|+++.+....
T Consensus 3 e~~t~lVIFGaTGDLa~RKL~PAL~~L~~~g 33 (195)
T d1h9aa1 3 EIKTLVTFFGGTGDLAKRKLYPSVFNLYKKG 33 (195)
T ss_dssp CCCEEEEEETTTSHHHHHTHHHHHHHHHHTT
T ss_pred CCceEEEEECcccHHHHhHHHHHHHHHHHcC
Confidence 3455566789999999999999999987653
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.88 E-value=3.2e+02 Score=15.42 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=8.3
Q ss_pred HHHHHHHHhhHHHHhh
Q psy1701 98 VISFYGMVGYCGYLKY 113 (270)
Q Consensus 98 ~~~~y~~~g~~gY~~f 113 (270)
+.+=.+++|+.||.-+
T Consensus 30 ~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 30 TALGISLLGIIGYIIH 45 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455666666543
No 6
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=3.16 E-value=3.6e+02 Score=19.41 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHhh
Q psy1701 179 GLMIIGTVLVAAIIPNLGPIISLVG 203 (270)
Q Consensus 179 ~~~~~~~~~lAi~ip~~~~v~~lvG 203 (270)
+.+-+...+++.++|..+.+++++|
T Consensus 6 i~~~~~~~ll~~~iP~~g~~~~li~ 30 (223)
T d1ciya3 6 ISLSLTQFLLSEFVPGAGFVLGLVD 30 (223)
T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHHH
T ss_pred hHHHHHHHHhhhcCCchHHHHHHHH
Confidence 4445666777778998887766553
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.89 E-value=4.2e+02 Score=13.66 Aligned_cols=18 Identities=11% Similarity=-0.095 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHHHHH
Q psy1701 202 VGAICFSMLGLFCPAVID 219 (270)
Q Consensus 202 vGs~~~~~l~filP~l~~ 219 (270)
.|+.+........|-..|
T Consensus 18 ~G~~~~~~~g~l~py~~f 35 (39)
T d1q90r_ 18 AGGAGLPITTLALGYGAF 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhccceeEE
Confidence 466666666666665544
No 8
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.84 E-value=6.3e+02 Score=16.95 Aligned_cols=40 Identities=15% Similarity=-0.022 Sum_probs=19.8
Q ss_pred cccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhc
Q psy1701 73 PIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYG 114 (270)
Q Consensus 73 ~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG 114 (270)
+-..||+.|+.- +..++..+++.+.+-..++...-..+++
T Consensus 63 ~t~ae~~~p~ge--wK~v~g~~~~~i~~s~~i~~~~r~~v~p 102 (144)
T d1v54d_ 63 ESFAEMNRSTNE--WKTVVGAAMFFIGFTALLLIWEKHYVYG 102 (144)
T ss_dssp SCHHHHTCCCSH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cccccccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467888888742 3345554444444333333333333443
No 9
>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.49 E-value=2.5e+02 Score=20.25 Aligned_cols=26 Identities=12% Similarity=-0.095 Sum_probs=21.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhc
Q psy1701 199 ISLVGAICFSMLGLFCPAVIDYVTFY 224 (270)
Q Consensus 199 ~~lvGs~~~~~l~filP~l~~l~~~~ 224 (270)
+-+.||++--.-=.++|+++.+....
T Consensus 23 ~VIFGatGDLA~RKL~PALf~L~~~g 48 (203)
T d1qkia1 23 FIIMGASGDLAKKKIYPTIWWLFRDG 48 (203)
T ss_dssp EEEETTTSHHHHHTHHHHHHHHHHTT
T ss_pred EEEECcccHHHHhHHHHHHHHHHHcC
Confidence 45679999999999999999987653
No 10
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.21 E-value=5.8e+02 Score=15.27 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhcCcc
Q psy1701 91 LNIAMAVVISFYGMVGYCGYLKYGEDT 117 (270)
Q Consensus 91 ~~~s~~~~~~~y~~~g~~gY~~fG~~~ 117 (270)
..=++.+..-++...|+ .|-.||..-
T Consensus 24 TIPslFiaGwlFVstGL-AYdvFGtPr 49 (82)
T d2axte1 24 TIPALFIAGWLFVSTGL-AYDVFGTPR 49 (82)
T ss_dssp HHHHHHHHHHHHHHTTH-HHHHTTCCC
T ss_pred cccHHHHhhhhheeccc-chhhcCCCC
Confidence 34456666777777775 799999643
Done!