RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1701
(270 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.016
Identities = 34/210 (16%), Positives = 63/210 (30%), Gaps = 75/210 (35%)
Query: 39 LPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTV------LPIENSMKKPGHFLGKF-GVL 91
L + S + + ++ + IG + + + PG G
Sbjct: 219 LENPSNTPDKD-------YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 92 ----NIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYG 147
+ AV I+ D+ S +++ K A+++LF G
Sbjct: 272 GHSQGLVTAVAIA-------------ETDSWESFFVSVRK-----------AITVLFFIG 307
Query: 148 L-------QFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVL--VAAII------ 192
+ +P I+ + +++ +P M L I V +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSP-M-------LSISNLTQEQVQDYVNKTNSH 359
Query: 193 -PNLGPI-ISLV-GAICF-------SMLGL 212
P + ISLV GA S+ GL
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Score = 30.4 bits (68), Expect = 0.79
Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 31/130 (23%)
Query: 12 FWIDARGFRDNHSGHFMYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTV 71
F+I R Y T LP + ++ P + + ++ + T
Sbjct: 304 FFIGVRC------------YEAYPNTSLPPSILEDSLENNEGVP----SPMLSISNL-TQ 346
Query: 72 LPIENSMKKPGHFLGKFGVLNIAM-----AVVISFYG----MVGYCGYLKYGEDTKGSIT 122
+++ + K L + I++ +V+S G + G L K
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS--GPPQSLYGLNLTL---RKAKAPSG 401
Query: 123 LNLPKDPFSE 132
L+ + PFSE
Sbjct: 402 LDQSRIPFSE 411
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.27
Identities = 32/200 (16%), Positives = 55/200 (27%), Gaps = 75/200 (37%)
Query: 91 LNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQF 150
L A V+I G++G G K VAL + +Y +Q
Sbjct: 147 LRPAKNVLI--DGVLG-SG-------------------------KTWVALDVCLSYKVQC 178
Query: 151 GVPSEIVWERIKHRVPIPRHNMGYY-IMRGLMIIGTVLVAAIIPNLG-------PIISLV 202
+ +I W + N+ ++ + L+ I PN I +
Sbjct: 179 KMDFKIFW--L---------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 203 GAICFSMLGLF-------CPAVIDYVTFYDPNKSWYRPRTIKNFII---ILI-------- 244
+I + L C V+ V + F + IL+
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNV--------QN-AKAWNAFNLSCKILLTTRFKQVT 278
Query: 245 -SLGALISGTYSSIEEIIAF 263
L A + S +
Sbjct: 279 DFLSAATTTHISLDHHSMTL 298
Score = 31.4 bits (70), Expect = 0.32
Identities = 26/230 (11%), Positives = 58/230 (25%), Gaps = 64/230 (27%)
Query: 61 VLFAMEGIG-TVL--------PIENSMKKPGHFLGKFGVLNIAMAVVI---SFYGMVGYC 108
++ + G G T + ++ M +L N V+ +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLLYQID-- 210
Query: 109 GYLKYGEDTKGSITLNLPKDPFSESIKILV-------ALSIL-----------FTYGLQ- 149
+ + S + L ++ L+ L +L F +
Sbjct: 211 --PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 150 ------FGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVL----------VAAIIP 193
V + H + + H+M ++ L V P
Sbjct: 269 LLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 194 NLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIIL 243
+S++ A D + +K I++ + +L
Sbjct: 328 RR---LSIIAESIRDG-----LATWDNWKHVNCDK---LTTIIESSLNVL 366
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 28.0 bits (63), Expect = 3.0
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 99 ISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKIL 137
+ G + T I PK P SE + +
Sbjct: 31 LPVLGSIQKFNMTNTRRSTSSLIVHEQPKSPISEKFRGI 69
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 27.9 bits (62), Expect = 4.7
Identities = 7/52 (13%), Positives = 14/52 (26%)
Query: 192 IPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIIL 243
P+ I L + F +W + T+K + +
Sbjct: 198 PEEFMPLDPTQEPIFPPELLRLKDVPPKQLRFEGERVTWIQASTLKELLDLK 249
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 26.4 bits (58), Expect = 5.8
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 217 VIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISG-----TYSSIEEIIAFYAINP 268
V P K + +++F+I G I G + S+ +++ ++I+P
Sbjct: 62 VATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISP 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.144 0.450
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,322,576
Number of extensions: 262821
Number of successful extensions: 591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 589
Number of HSP's successfully gapped: 18
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.6 bits)