RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1701
         (270 letters)



>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein,
           GcvT {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 89

 Score = 27.4 bits (61), Expect = 0.56
 Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 14/77 (18%)

Query: 166 PIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISL---------VGAICF-SMLGLFCP 215
            IPR   GY +     +IG V    + P L   I +          G      + G    
Sbjct: 12  GIPRE--GYKVYANGEMIGEVTSGTLSPLLNVGIGIAFVKEEYAKPGIEIEVEIRGQRKK 69

Query: 216 AVIDYVTFYDPNKSWYR 232
           AV     FYDP K  Y 
Sbjct: 70  AVTVTPPFYDPKK--YG 84


>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide),
           N-terminal domain {Bacillus thuringiensis tenebrionis,
           CRYIIIA (BT13) [TaxId: 1444]}
          Length = 229

 Score = 27.5 bits (61), Expect = 1.6
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 175 YIMRGLMIIGTVLVAAIIPNLGPIISLVGAI 205
            I +G+ ++G +L     P  G ++S     
Sbjct: 5   VIQKGISVVGDLLGVVGFPFGGALVSFYTNF 35


>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 223

 Score = 26.1 bits (57), Expect = 3.9
 Identities = 4/24 (16%), Positives = 10/24 (41%)

Query: 220 YVTFYDPNKSWYRPRTIKNFIIIL 243
            + F     +W +  T+K  + + 
Sbjct: 35  QLRFEGERVTWIQASTLKELLDLK 58


>d1smya1 d.74.3.1 (A:1-49,A:173-229) RNA polymerase alpha {Thermus
           thermophilus [TaxId: 274]}
          Length = 106

 Score = 24.5 bits (53), Expect = 9.1
 Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 117 TKGSITLNLPKDPFSESIKILVALSILFT 145
           T GS+T   P +  +++++IL      F+
Sbjct: 78  TDGSVT---PLEALNQAVEILREHLTYFS 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.144    0.450 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,060,125
Number of extensions: 49684
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 9
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.3 bits)