BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17011
(321 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66J69|RNG2A_XENLA E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-a
PE=2 SV=1
Length = 344
Score = 309 bits (791), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/339 (49%), Positives = 213/339 (62%), Gaps = 40/339 (11%)
Query: 9 TTKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFC 68
++K+WELS+YEL+RTPQEAI D TEIAVSPRSLHSELMCPICLDMLK TMTTKECLHRFC
Sbjct: 10 SSKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFC 69
Query: 69 SDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLN 128
SDCI+TALRSGNKECPTCRKKLVSKRSLR DPNFD LISKIYPSRDEYEAHQ RVL KLN
Sbjct: 70 SDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQDRVLAKLN 129
Query: 129 KSHSQAALVQSINEGIKLQSQHRLQRTKKN--------IQGNEENTPDISNTDQTSVQQQ 180
+ H+Q AL SI EG+K+Q+ HR QR +K+ G E+N S+ SV
Sbjct: 130 RLHNQQALSSSIEEGLKMQAMHRAQRVRKHQHESDNTTFSGGEDNCDSRSHVSNPSVHSN 189
Query: 181 PSPQPTTSNAIKNQLSPAVP--------KSPEARPSSAASSSTTKVSKKTAKSDVMTSEL 232
P+ + ++ S A P +SP+ P + S ++ + V
Sbjct: 190 QEAGPSRKRSRASEDSGAEPDLSHEGGVRSPDP-PGGGETGSEIELVFRAHPLLV----- 243
Query: 233 ETDDTSETDDKISTVESATDGEVDHLTKYLTMRLRLEG------------SDICDSNFGI 280
E D S+T V++ + VDHL+KYL +R+ LE ++ + + I
Sbjct: 244 EKDGYSQT----RYVKTTANATVDHLSKYLALRIALEEEVLRGEAEGVTLGEVSEKQYTI 299
Query: 281 YV--SPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317
Y+ + + L G+ +L +++KYWK KPLE+YY+
Sbjct: 300 YICTGVAGGQYTTLNGSLTLELVNEKYWKVSKPLELYYA 338
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1
Length = 336
Score = 306 bits (783), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/327 (51%), Positives = 211/327 (64%), Gaps = 29/327 (8%)
Query: 10 TKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCS 69
+K+WELS+YEL RTPQEAITD EI VSPRSLHSELMCPICLDMLK TMTTKECLHRFC+
Sbjct: 14 SKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCA 73
Query: 70 DCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNK 129
DCIITALRSGNKECPTCRKKLVSKRSLR DPNFD LISKIYPSRDEYEAHQ RVL ++NK
Sbjct: 74 DCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINK 133
Query: 130 SHSQAALVQSINEGIKLQSQHRLQRTKK----NIQGNEEN--TPDISNTDQTSVQQQPSP 183
++Q AL SI EG+K+Q+ +RLQR KK N G E+N + SN S Q+
Sbjct: 134 HNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCSNASTHSNQEAGPS 193
Query: 184 QPTTSNAIKNQLSPAVPKSPEA-RPSSAASSSTTKVSKKTAKSDVMTSELETDDTSETDD 242
T + + L P + A P +S V + + +E DD+++T
Sbjct: 194 NKRTKTSDDSGLEPDNNNAAMAIDPVMDGASEIELVFRPHP------TLMEKDDSAQT-- 245
Query: 243 KISTVESATDGEVDHLTKYLTMRLRLEG------------SDICDSNFGIYVSPSSNNFI 290
++++ + VDHL+KYL +RL LE + + IY++ +S F
Sbjct: 246 --RYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFT 303
Query: 291 LLPGNQSLRQIHDKYWKSEKPLEVYYS 317
+L G+ SL + +KYWK KP+E+YY+
Sbjct: 304 VLNGSFSLELVSEKYWKVNKPMELYYA 330
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1
Length = 336
Score = 305 bits (782), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 164/328 (50%), Positives = 214/328 (65%), Gaps = 31/328 (9%)
Query: 10 TKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCS 69
+K+WELS+YEL RTPQEAITD EI VSPRSLHSELMCPICLDMLK TMTTKECLHRFC+
Sbjct: 14 SKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCA 73
Query: 70 DCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNK 129
DCIITALRSGNKECPTCRKKLVSKRSLR DPNFD LISKIYPSRDEYEAHQ RVL ++NK
Sbjct: 74 DCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINK 133
Query: 130 SHSQAALVQSINEGIKLQSQHRLQRTKK----NIQGNEENTPDISNTDQTSVQQQPSPQP 185
++Q AL SI EG+K+Q+ +RLQR KK N G E+N D S+ S P
Sbjct: 134 HNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNG-DSSHCSNASTHSNQEAGP 192
Query: 186 TTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAKSDVMT----SELETDDTSETD 241
+ N+ + S ++ A+ + V ++ +++ + +E DD+++T
Sbjct: 193 S------NKRTKTSDDSGLELDNNNAAMAIDPVMDGASEIELVFRPHPTLMEKDDSAQT- 245
Query: 242 DKISTVESATDGEVDHLTKYLTMRLRLEG------------SDICDSNFGIYVSPSSNNF 289
++++ + VDHL+KYL +RL LE + + IY++ +S F
Sbjct: 246 ---RYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQF 302
Query: 290 ILLPGNQSLRQIHDKYWKSEKPLEVYYS 317
+L G+ SL + +KYWK KP+E+YY+
Sbjct: 303 TVLNGSFSLELVSEKYWKVNKPMELYYA 330
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1
Length = 336
Score = 305 bits (781), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 164/328 (50%), Positives = 214/328 (65%), Gaps = 31/328 (9%)
Query: 10 TKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCS 69
+K+WELS+YEL RTPQEAITD EI VSPRSLHSELMCPICLDMLK TMTTKECLHRFC+
Sbjct: 14 SKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCA 73
Query: 70 DCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNK 129
DCIITALRSGNKECPTCRKKLVSKRSLR DPNFD LISKIYPSRDEYEAHQ RVL ++NK
Sbjct: 74 DCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINK 133
Query: 130 SHSQAALVQSINEGIKLQSQHRLQRTKK----NIQGNEENTPDISNTDQTSVQQQPSPQP 185
++Q AL SI EG+K+Q+ +RLQR KK N G E+N D S+ S P
Sbjct: 134 HNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNG-DSSHCSNASTHSNQEAGP 192
Query: 186 TTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAKSDVMT----SELETDDTSETD 241
+ N+ + S ++ A+ + V ++ +++ + +E DD+++T
Sbjct: 193 S------NKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKDDSAQT- 245
Query: 242 DKISTVESATDGEVDHLTKYLTMRLRLEG------------SDICDSNFGIYVSPSSNNF 289
++++ + VDHL+KYL +RL LE + + IY++ +S F
Sbjct: 246 ---RYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQF 302
Query: 290 ILLPGNQSLRQIHDKYWKSEKPLEVYYS 317
+L G+ SL + +KYWK KP+E+YY+
Sbjct: 303 TVLNGSFSLELVSEKYWKVNKPMELYYA 330
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1
Length = 336
Score = 304 bits (779), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 170/337 (50%), Positives = 215/337 (63%), Gaps = 27/337 (8%)
Query: 1 MTSTEQSGT----TKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKK 56
MT T Q+ +K+WELS+YEL RTPQEAITD EIAVSPRSLHSELMCPICLDMLK
Sbjct: 1 MTQTVQTNGVQPLSKTWELSLYELQRTPQEAITDGLEIAVSPRSLHSELMCPICLDMLKN 60
Query: 57 TMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEY 116
TMTTKECLHRFC+DCIITALRSGNKECPTCRKKLVSKRSLR DPNFD LISKIYPSRDEY
Sbjct: 61 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 120
Query: 117 EAHQVRVLEKLNKSHSQAALVQSINEGIKLQSQHRLQRTKK----NIQGNEENTPDISNT 172
EAHQ RVL +++K ++Q AL SI EG+K+Q+ +RLQR KK N G E+N D S+
Sbjct: 121 EAHQERVLARISKHNNQQALSHSIEEGLKIQAMNRLQRGKKHQIENGSGAEDNG-DSSHC 179
Query: 173 DQTSVQQQPSPQPTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAKSDVMTSEL 232
SV P+ + S A + + VS+ + +
Sbjct: 180 SNASVHSNQEAGPSIKRTKTSDDSGL--DMDNATENGGGDIALDGVSEIELVFRPHPTLM 237
Query: 233 ETDDTSETDDKISTVESATDGEVDHLTKYLTMRLRL-------EGSDI-----CDSNFGI 280
E +D ++T ++++ + VDHL+KYL +RL L E S I + + I
Sbjct: 238 EKEDAAQT----RYIKTSGNATVDHLSKYLAVRLALEEMRKNGEASPINVEAASEKQYTI 293
Query: 281 YVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317
Y+ +SN F +L G+ SL + +KYWK KP+E+Y++
Sbjct: 294 YIPTASNQFTVLNGSFSLELVSEKYWKVNKPMELYFA 330
>sp|Q7ZWM8|RNG2B_XENLA E3 ubiquitin-protein ligase RING2-B OS=Xenopus laevis GN=rnf2-b
PE=2 SV=2
Length = 343
Score = 300 bits (769), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 165/339 (48%), Positives = 212/339 (62%), Gaps = 41/339 (12%)
Query: 9 TTKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFC 68
++K+WELS+YEL+RTPQ AI D TEIAVSPRSLHSELMCPICLDMLK TMTTKECLHRFC
Sbjct: 10 SSKTWELSLYELHRTPQ-AIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFC 68
Query: 69 SDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLN 128
SDCI+TALRSGNKECPTCRKKLVSKRSLR DPNFD LISKIYPSRDEYEAHQ RVL KL+
Sbjct: 69 SDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQDRVLAKLS 128
Query: 129 KSHSQAALVQSINEGIKLQSQHRLQRTKKN--------IQGNEENTPDISNTDQTSVQQQ 180
+ H+Q AL SI EG+K+Q+ HR QR +K+ G E+N S+ SV
Sbjct: 129 RLHNQQALSSSIEEGLKMQAMHRAQRVRKHQHESDNTTFSGGEDNCDSRSHVSNPSVHSN 188
Query: 181 PSPQPTTSNAIKNQLSPAVP--------KSPEARPSSAASSSTTKVSKKTAKSDVMTSEL 232
P+ + ++ S A P +SP+ P + S ++ + V
Sbjct: 189 QEAGPSRKRSRASEDSGAEPDLSHEGGVRSPDP-PGGGENGSEIELVFRAHPLLV----- 242
Query: 233 ETDDTSETDDKISTVESATDGEVDHLTKYLTMRLRLEG------------SDICDSNFGI 280
E D S+T V++ + VDHL+KYL +R+ LE ++ + + I
Sbjct: 243 EKDGYSQT----RYVKTTANATVDHLSKYLALRIALEEEALRGGAEGVTVGEVSEKQYTI 298
Query: 281 YV--SPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317
Y+ + + L G+ +L +++KYWK KPLE+YY+
Sbjct: 299 YICTGAAGGQYTTLNGSLTLELVNEKYWKISKPLELYYA 337
>sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1
SV=2
Length = 406
Score = 278 bits (710), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 158/394 (40%), Positives = 213/394 (54%), Gaps = 88/394 (22%)
Query: 9 TTKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFC 68
+K+WELS+YEL+RTPQEAI D TEIAVSPRSLHSELMCPICLDMLK TMTTKECLHRFC
Sbjct: 10 ASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFC 69
Query: 69 SDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLN 128
SDCI+TALRSGNKECPTCRKKLVSKRSLR DPNFD LISKIYPSR+EYEAHQ RVL +L+
Sbjct: 70 SDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIRLS 129
Query: 129 KSHSQAALVQSINEGIKLQSQHRLQRTKKNIQGNEENTPDISNTDQTSVQQQPSPQPTTS 188
+ H+Q AL SI EG+++Q+ HR QR ++ + G+++ T +S + + + + +S
Sbjct: 130 RLHNQQALSSSIEEGLRMQAMHRAQRVRRPMPGSDQ-TATMSGGEGEPGEGEGDGEDVSS 188
Query: 189 NAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAKSDVMTSELETDDTS---------- 238
++ + PK P R + A +SS + ++ D
Sbjct: 189 DSAPDSAPGPAPKRP--RGAGAGASSVGTGGGAAGGACGGAGSEDSGDRGGTLGGGTLGP 246
Query: 239 ---------------------------ETDDKIST--VESATDGEVDHLTKYLTMRLRLE 269
E + T V++ + VDHL+KYL +R+ LE
Sbjct: 247 PSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALE 306
Query: 270 ----------------GSD------------------------------ICDSNFGIYVS 283
SD + + + IY++
Sbjct: 307 RRQQQETTEPGGPGGGASDTGGPDGGGGERGVAGGGEGPEEPALPSLEGVSEKQYTIYIA 366
Query: 284 PSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317
P F L G+ +L +++K+WK +PLE+ Y+
Sbjct: 367 PGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYA 400
>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2 PE=2
SV=1
Length = 308
Score = 275 bits (703), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/268 (54%), Positives = 185/268 (69%), Gaps = 19/268 (7%)
Query: 10 TKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCS 69
+K+WELS+YEL RTPQEAITD EI VSPRSLHSELMCPICLDMLK TMTTKECLHRFC+
Sbjct: 14 SKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCA 73
Query: 70 DCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNK 129
DCIITALRSGNKECPTCRKKLVSKRSLR DPNFD LISKIYPSRDEYEAHQ RVL ++NK
Sbjct: 74 DCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINK 133
Query: 130 SHSQAALVQSINEGIKLQSQHRLQRTKK----NIQGNEENTPDISNTDQTSVQQQPSPQP 185
++Q AL SI EG+K+Q+ +RLQR KK N G E+N D S+ S P
Sbjct: 134 HNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNG-DSSHCSNASTHSNQEAGP 192
Query: 186 TTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAKSDVMT----SELETDDTSETD 241
+ N+ + S ++ A+ + V ++ +++ + +E DD+++T
Sbjct: 193 S------NKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKDDSAQT- 245
Query: 242 DKISTVESATDGEVDHLTKYLTMRLRLE 269
++++ + VDHL+KYL +RL LE
Sbjct: 246 ---RYIKTSGNATVDHLSKYLAVRLALE 270
>sp|Q06587|RING1_HUMAN E3 ubiquitin-protein ligase RING1 OS=Homo sapiens GN=RING1 PE=1
SV=2
Length = 406
Score = 264 bits (675), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 120/157 (76%), Positives = 139/157 (88%)
Query: 10 TKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCS 69
+K+WELS+YEL+RTPQEAI D TEIAVSPRSLHSELMCPICLDMLK TMTTKECLHRFCS
Sbjct: 11 SKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCS 70
Query: 70 DCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNK 129
DCI+TALRSGNKECPTCRKKLVSKRSLR DPNFD LISKIYPSR+EYEAHQ RVL +L++
Sbjct: 71 DCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIRLSR 130
Query: 130 SHSQAALVQSINEGIKLQSQHRLQRTKKNIQGNEENT 166
H+Q AL SI EG+++Q+ HR QR ++ I G+++ T
Sbjct: 131 LHNQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTT 167
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 268 LEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317
LEG + + + IY++P F L G+ +L +++K+WK +PLE+ Y+
Sbjct: 353 LEG--VSEKQYTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYA 400
>sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1
PE=2 SV=2
Length = 406
Score = 263 bits (672), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 119/157 (75%), Positives = 139/157 (88%)
Query: 10 TKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCS 69
+K+WELS+YEL+RTPQEAI D TEIAVSPRSLHSELMCPICLDMLK TMTTKECLHRFCS
Sbjct: 11 SKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCS 70
Query: 70 DCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNK 129
DCI+TALRSGNKECPTCRKKLVSKRSLR DPNFD LISKIYPSR+EYEAHQ RVL +L++
Sbjct: 71 DCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIRLSR 130
Query: 130 SHSQAALVQSINEGIKLQSQHRLQRTKKNIQGNEENT 166
H+Q AL SI EG+++Q+ HR QR ++ + G+++ T
Sbjct: 131 LHNQQALSSSIEEGLRMQAMHRAQRVRRPMPGSDQTT 167
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 46/120 (38%)
Query: 247 VESATDGEVDHLTKYLTMRLRLE----------------GSD------------------ 272
V++ + VDHL+KYL +R+ LE SD
Sbjct: 284 VKTTGNATVDHLSKYLALRIALERRQQQETVEPGGPGGGASDTGGPDGGGGERGVSGGGE 343
Query: 273 ------------ICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWKK 320
+ + + IY++P F L G+ +L +++K+WK +PLE+ Y+ K
Sbjct: 344 GPEEPALPSLEGVSEKQYTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTK 403
>sp|Q5TJF3|RING1_CANFA E3 ubiquitin-protein ligase RING1 OS=Canis familiaris GN=RING1 PE=3
SV=2
Length = 406
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 120/165 (72%), Positives = 140/165 (84%)
Query: 2 TSTEQSGTTKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTK 61
T +K+WELS+YEL+RTPQEAI D TEIAVSPRSLHSELMCPICLDMLK TMTTK
Sbjct: 3 TPANAQNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTK 62
Query: 62 ECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQV 121
ECLHRFCSDCI+TALRSGNKECPTCRKKLVSKRSLR DPNFD LISKIYPSR+EYEAHQ
Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAHQD 122
Query: 122 RVLEKLNKSHSQAALVQSINEGIKLQSQHRLQRTKKNIQGNEENT 166
RVL +L++ H+Q AL SI EG+++Q+ HR QR ++ + G+++ T
Sbjct: 123 RVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMPGSDQTT 167
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 268 LEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317
LEG + + + IY++P F L G+ +L +++K+WK +PLE+ Y+
Sbjct: 353 LEG--VSEKQYTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYA 400
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster GN=Sce
PE=1 SV=1
Length = 435
Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 123/146 (84%), Positives = 134/146 (91%)
Query: 11 KSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSD 70
K+WELS+YEL R PQE ITD+TEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSD
Sbjct: 10 KTWELSLYELQRKPQEVITDSTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSD 69
Query: 71 CIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNKS 130
CI+TALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSR+EYEA Q +V+ K N++
Sbjct: 70 CIVTALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSREEYEAIQEKVMAKFNQT 129
Query: 131 HSQAALVQSINEGIKLQSQHRLQRTK 156
SQ ALV SINEGIKLQSQ+R QR +
Sbjct: 130 QSQQALVNSINEGIKLQSQNRPQRFR 155
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 5/82 (6%)
Query: 244 ISTVESATDGEVDHLTKYLTMRLRLE-GSDICDS----NFGIYVSPSSNNFILLPGNQSL 298
+ +++ + VDHL+KYL MRL L+ G+D+ ++ NF IYV+P ++L GNQ+L
Sbjct: 353 VRYIKTTANATVDHLSKYLAMRLTLDLGADLPEACRVLNFCIYVAPQPQQLVILNGNQTL 412
Query: 299 RQIHDKYWKSEKPLEVYYSWKK 320
Q++DK+WK KP+E+YYSWKK
Sbjct: 413 HQVNDKFWKVNKPMEMYYSWKK 434
>sp|A2T6X5|RING1_PANTR E3 ubiquitin-protein ligase RING1 OS=Pan troglodytes GN=RING1 PE=3
SV=1
Length = 377
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 105/137 (76%), Positives = 120/137 (87%)
Query: 30 DNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKK 89
D TEIAVSPRSLHSELMCPICLDMLK TMTTKECLHRFCSDCI+TALRSGNKECPTCRKK
Sbjct: 2 DGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKK 61
Query: 90 LVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNKSHSQAALVQSINEGIKLQSQ 149
LVSKRSLR DPNFD LISKIYPSR+EYEAHQ RVL +L++ H+Q AL SI EG+++Q+
Sbjct: 62 LVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAM 121
Query: 150 HRLQRTKKNIQGNEENT 166
HR QR ++ I G+++ T
Sbjct: 122 HRAQRVRRPIPGSDQTT 138
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 268 LEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWKK 320
LEG + + + IY++P F L G+ +L +++K+WK +PLE+ Y+ K
Sbjct: 324 LEG--VSEKQYTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTK 374
>sp|A1YFY1|RING1_PANPA E3 ubiquitin-protein ligase RING1 OS=Pan paniscus GN=RING1 PE=3
SV=1
Length = 377
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 105/137 (76%), Positives = 120/137 (87%)
Query: 30 DNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKK 89
D TEIAVSPRSLHSELMCPICLDMLK TMTTKECLHRFCSDCI+TALRSGNKECPTCRKK
Sbjct: 2 DGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKK 61
Query: 90 LVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNKSHSQAALVQSINEGIKLQSQ 149
LVSKRSLR DPNFD LISKIYPSR+EYEAHQ RVL +L++ H+Q AL SI EG+++Q+
Sbjct: 62 LVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAM 121
Query: 150 HRLQRTKKNIQGNEENT 166
HR QR ++ I G+++ T
Sbjct: 122 HRAQRVRRPIPGSDQTT 138
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 268 LEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWKK 320
LEG + + + IY++P F L G+ +L +++K+WK +PLE+ Y+ K
Sbjct: 324 LEG--VSEKQYTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTK 374
>sp|Q8WMN5|RING1_MACMU E3 ubiquitin-protein ligase RING1 OS=Macaca mulatta GN=RING1 PE=3
SV=1
Length = 377
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 105/137 (76%), Positives = 120/137 (87%)
Query: 30 DNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKK 89
D TEIAVSPRSLHSELMCPICLDMLK TMTTKECLHRFCSDCI+TALRSGNKECPTCRKK
Sbjct: 2 DGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKK 61
Query: 90 LVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNKSHSQAALVQSINEGIKLQSQ 149
LVSKRSLR DPNFD LISKIYPSR+EYEAHQ RVL +L++ H+Q AL SI EG+++Q+
Sbjct: 62 LVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAM 121
Query: 150 HRLQRTKKNIQGNEENT 166
HR QR ++ I G+++ T
Sbjct: 122 HRAQRVRRPIPGSDQTT 138
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 268 LEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWKK 320
LEG + + + IY++P F L G+ +L +++K+WK +PLE+ Y+ K
Sbjct: 324 LEG--VSEKQYTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTK 374
>sp|A1YER5|RING1_GORGO E3 ubiquitin-protein ligase RING1 OS=Gorilla gorilla gorilla
GN=RING1 PE=3 SV=1
Length = 377
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 105/137 (76%), Positives = 120/137 (87%)
Query: 30 DNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKK 89
D TEIAVSPRSLHSELMCPICLDMLK TMTTKECLHRFCSDCI+TALRSGNKECPTCRKK
Sbjct: 2 DGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKK 61
Query: 90 LVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNKSHSQAALVQSINEGIKLQSQ 149
LVSKRSLR DPNFD LISKIYPSR+EYEAHQ RVL +L++ H+Q AL SI EG+++Q+
Sbjct: 62 LVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAM 121
Query: 150 HRLQRTKKNIQGNEENT 166
HR QR ++ I G+++ T
Sbjct: 122 HRAQRVRRPIPGSDQTT 138
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 268 LEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWKK 320
LEG + + + IY++P F L G+ +L +++K+WK +PLE+ Y+ K
Sbjct: 324 LEG--VSEKQYTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTK 374
>sp|Q9FKW0|RNG1A_ARATH Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana
GN=RING1A PE=1 SV=2
Length = 522
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 22 RTPQEAITDNTE-IAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGN 80
R+P D +E + + + ++ CPICL ++KKT T ECLHRFC +CI ++R GN
Sbjct: 110 RSPSSISGDQSEFMEIDLGEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGN 169
Query: 81 KECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQV 121
ECP CRK S+RSLR DP FD LI+ ++ + D YE ++
Sbjct: 170 NECPACRKHCASRRSLRDDPKFDALIAALFTNIDSYEEEEL 210
>sp|Q0WX00|RNG1B_ARATH Putative E3 ubiquitin-protein ligase RING1b OS=Arabidopsis thaliana
GN=RING1B PE=1 SV=1
Length = 460
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 57/78 (73%)
Query: 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFD 103
++ C ICL +++KT T ECLHRFC +CI ++R GN ECPTCRK S+RSLR DPNFD
Sbjct: 100 DVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKHCASRRSLRDDPNFD 159
Query: 104 LLISKIYPSRDEYEAHQV 121
LI+ ++ + D++E ++
Sbjct: 160 ALIAALFKNIDKFEEEEL 177
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITAL--RSGNKECPTCRKKLVSKRSLRADPNF 102
L CPICL+++K+ ++T +C H FC C++ L + G +CP C+ + ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVST-QCDHIFCKFCMLKLLNQKKGPSQCPLCKNE-ITKRSLQGSARF 79
Query: 103 DLLISKIYPSRDEYE 117
L+ ++ D +E
Sbjct: 80 SQLVEELLKIIDAFE 94
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITAL--RSGNKECPTCRKKLVSKRSLRADPNF 102
L CPICL+++K+ ++TK C H FC C++ L R G +CP C+ ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQRKGPSQCPLCKND-ITKRSLQESTRF 79
Query: 103 DLLISKI 109
L+ ++
Sbjct: 80 SQLVEEL 86
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITAL--RSGNKECPTCRKKLVSKRSLRADPNF 102
L CPICL+++K+ ++TK C H FC C++ L + G +CP C+ ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKND-ITKRSLQESTRF 79
Query: 103 DLLISKI 109
L+ ++
Sbjct: 80 SQLVEEL 86
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITAL--RSGNKECPTCRKKLVSKRSLRADPNF 102
L CPICL+++K+ ++TK C H FC C++ L + G +CP C+ ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKND-ITKRSLQESTRF 79
Query: 103 DLLISKI 109
L+ ++
Sbjct: 80 SQLVEEL 86
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITAL--RSGNKECPTCRKKLVSKRSLRADPNF 102
L CPICL+++K+ ++TK C H FC C++ L + G +CP C+ ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKND-ITKRSLQESTRF 79
Query: 103 DLLISKI 109
L+ ++
Sbjct: 80 SQLVEEL 86
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITAL--RSGNKECPTCRKKLVSKRSLRADPNF 102
L CPICL+++K+ ++TK C H FC C++ L + G +CP C+ ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCRFCMLKLLNQKKGPSQCPLCKND-ITKRSLQESTRF 79
Query: 103 DLLISKI 109
L+ ++
Sbjct: 80 SQLVEEL 86
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITAL--RSGNKECPTCRKKLVSKRSLRADPNF 102
L CPICL+++K+ ++TK C H FC C++ L + G +CP C+ ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKND-ITKRSLQESTRF 79
Query: 103 DLLISKI 109
L+ ++
Sbjct: 80 SQLVEEL 86
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITAL--RSGNKECPTCRKKLVSKRSLRADPNF 102
L CPICL+++K+ ++TK C H FC C++ L + G +CP C+ ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKND-ITKRSLQESTRF 79
Query: 103 DLLISKI 109
L+ ++
Sbjct: 80 SQLVEEL 86
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus musculus
GN=Brca1 PE=1 SV=3
Length = 1812
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITAL--RSGNKECPTCRKKLVSKRSLRADPNF 102
L CPICL+++K+ ++TK C H FC C++ L + G +CP C+ + ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNE-ITKRSLQGSTRF 79
Query: 103 DLLISKI 109
L ++
Sbjct: 80 SQLAEEL 86
>sp|P35227|PCGF2_HUMAN Polycomb group RING finger protein 2 OS=Homo sapiens GN=PCGF2 PE=1
SV=1
Length = 344
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKR---SLR 97
L+ LMC +C T ECLH FC CI+ L + NK CP C ++ R S+R
Sbjct: 12 LNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLET-NKYCPMCDVQVHKTRPLLSIR 70
Query: 98 ADPNFDLLISKIYPS---------RDEYEAHQV 121
+D ++ K+ P RD Y A+ +
Sbjct: 71 SDKTLQDIVYKLVPGLFKDEMKRRRDFYAAYPL 103
>sp|Q640D5|BMI1B_XENLA Polycomb complex protein BMI-1-B OS=Xenopus laevis GN=bmi1b PE=2
SV=1
Length = 323
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSL---R 97
L+ LMC +C T ECLH FC CI+ L + +K CP C ++ R L R
Sbjct: 12 LNPHLMCVLCGGYFIDAATIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIR 70
Query: 98 ADPNFDLLISKIYPS---------RDEYEAH 119
AD ++ K+ P RD Y AH
Sbjct: 71 ADKTLQDIVYKLVPGLFKGEMKRRRDFYAAH 101
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 2 TSTEQSGTTKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTK 61
T+ S T+ ++ S N ++ I D + + + + L CPIC + L++ TT
Sbjct: 40 TTFASSDATQMYKKSRISSNSENKKQIPDTKTLLETFQKIKKTLECPICTEALQRPFTTH 99
Query: 62 ECLHRFCSDCIITALRSGNKECPTCRKKLVSKRS 95
C H +C +C++ L+ +K CPTCR+KL ++ S
Sbjct: 100 -CGHTYCYECLLNWLKE-SKSCPTCRQKLYTQPS 131
>sp|Q8WVD3|RN138_HUMAN E3 ubiquitin-protein ligase RNF138 OS=Homo sapiens GN=RNF138 PE=1
SV=1
Length = 245
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFD 103
+ CP+C ++LK + T C H FC C +TA+R CP CR + R RA P
Sbjct: 15 DFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVT--RRERACPERA 72
Query: 104 LLISKI 109
L + I
Sbjct: 73 LDLENI 78
>sp|P23798|PCGF2_MOUSE Polycomb group RING finger protein 2 OS=Mus musculus GN=Pcgf2 PE=1
SV=2
Length = 342
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKR---SLR 97
L+ LMC +C T ECLH FC CI+ L + NK CP C ++ R S+R
Sbjct: 12 LNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLET-NKYCPMCDVQVHKTRPLLSIR 70
Query: 98 ADPNFDLLISKIYPS---------RDEYEAHQV 121
+D ++ K+ P RD Y A+ +
Sbjct: 71 SDKTLQDIVYKLVPGLFKDEMKRRRDFYAAYPL 103
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADP 100
L +L+CPIC+ ++K T C H FC CIIT LR+ +CP C + L + + P
Sbjct: 46 LDKDLLCPICMQIIKDAFLTA-CGHSFCYMCIITHLRN-KSDCPCCSQHLTNNQLY---P 100
Query: 101 NFDL 104
NF L
Sbjct: 101 NFLL 104
>sp|Q1L721|RN138_XENLA E3 ubiquitin-protein ligase RNF138 OS=Xenopus laevis GN=rnf138
PE=1 SV=1
Length = 222
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 26 EAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPT 85
EA++ ++EI E +CP+C ++L+ + T+ C H FC C + A++SG CP
Sbjct: 3 EAMSCSSEIT-------EEFLCPVCQEILQTPVRTQTCRHVFCRKCFMLAMKSGGAYCPL 55
Query: 86 CR 87
CR
Sbjct: 56 CR 57
>sp|Q91648|BMI1A_XENLA Polycomb complex protein BMI-1-A OS=Xenopus laevis GN=bmi1a PE=1
SV=1
Length = 326
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSL---R 97
L+ LMC +C T ECLH FC CI+ L + +K CP C ++ R L R
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIR 70
Query: 98 ADPNFDLLISKIYPS---------RDEYEAH 119
AD ++ K+ P RD Y AH
Sbjct: 71 ADKTLQDIVYKLVPGLFKGEMKRRRDFYAAH 101
>sp|Q9BZY9|TRI31_HUMAN E3 ubiquitin-protein ligase TRIM31 OS=Homo sapiens GN=TRIM31 PE=1
SV=2
Length = 425
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCI--ITALRSGNKECPTCRKKLVSKRSLRA 98
L E++CPICLD+L+K +T +C H FC CI I G +CP C K V K ++R
Sbjct: 10 LQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC-KTSVRKNAIRF 67
Query: 99 DPNFDLLISKI 109
+ L+ KI
Sbjct: 68 NSLLRNLVEKI 78
>sp|Q9M9Y4|DRIP1_ARATH E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana GN=DRIP1
PE=1 SV=2
Length = 421
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 34 IAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKE-CPTCRKKLVS 92
I V ++ + L C IC ++L+ T ECLH FC CI + E CP C L S
Sbjct: 3 IKVKKETMRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLGS 62
Query: 93 K--RSLRADPNFDLLISKIYP-SRDEYEAHQVRVLEKLNKSHSQAALVQS 139
LR D N L +KI+ R + +A + L K S ++LV S
Sbjct: 63 TPLEKLRPDHNLQDLRAKIFALKRRKVKAPGIVSLPGKRKERSISSLVVS 112
>sp|Q32LN5|RN138_BOVIN E3 ubiquitin-protein ligase RNF138 OS=Bos taurus GN=RNF138 PE=2
SV=1
Length = 245
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 33 EIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92
E++ + + CP+C ++LK + T C H FC C +TA+R CP CR +
Sbjct: 4 ELSAATSYTEDDFYCPVCQEVLKTPVRTAACQHVFCRKCFLTAMRESGIHCPLCRGNVT- 62
Query: 93 KRSLRADPNFDLLISKI 109
R RA P L + I
Sbjct: 63 -RRERACPERALDLENI 78
>sp|Q9CQE0|RN138_MOUSE E3 ubiquitin-protein ligase RNF138 OS=Mus musculus GN=Rnf138 PE=2
SV=1
Length = 245
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 33 EIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92
E++ + + CP+C ++LK + T C H FC C +TA+R CP CR +
Sbjct: 4 ELSAATSYTEDDFYCPVCQEVLKTPVRTAACQHVFCRKCFLTAMRESGIHCPLCRGSVT- 62
Query: 93 KRSLRADPNFDLLISKI 109
R RA P L + I
Sbjct: 63 -RRERACPERALDLENI 78
>sp|Q5SDR3|BMI1_CHICK Polycomb complex protein BMI-1 OS=Gallus gallus GN=BMI1 PE=2 SV=1
Length = 326
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSL---R 97
L+ LMC +C T ECLH FC CI+ L + +K CP C ++ R L R
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIR 70
Query: 98 ADPNFDLLISKIYPS---------RDEYEAH 119
+D ++ K+ P RD Y AH
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRRDFYAAH 101
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSK-RSLRAD 99
L +EL C IC + + +T C H FCS CI + R +ECP CR++++S+ RSL D
Sbjct: 371 LDNELQCIICSEHFIEAVTLN-CAHSFCSYCI-KSWRKRKEECPICRQEILSETRSLVLD 428
Query: 100 PNFDLLISKIYP 111
D ++ K+ P
Sbjct: 429 NCIDSMVDKLSP 440
>sp|Q32KX7|BMI1_BOVIN Polycomb complex protein BMI-1 OS=Bos taurus GN=BMI1 PE=2 SV=1
Length = 326
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSL---R 97
L+ LMC +C T ECLH FC CI+ L + +K CP C ++ R L R
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIR 70
Query: 98 ADPNFDLLISKIYPS---------RDEYEAH 119
+D ++ K+ P RD Y AH
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRRDFYAAH 101
>sp|Q5R8L2|BMI1_PONAB Polycomb complex protein BMI-1 OS=Pongo abelii GN=BMI1 PE=2 SV=1
Length = 326
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSL---R 97
L+ LMC +C T ECLH FC CI+ L + +K CP C ++ R L R
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIR 70
Query: 98 ADPNFDLLISKIYPS---------RDEYEAH 119
+D ++ K+ P RD Y AH
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRRDFYAAH 101
>sp|P35226|BMI1_HUMAN Polycomb complex protein BMI-1 OS=Homo sapiens GN=BMI1 PE=1 SV=2
Length = 326
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSL---R 97
L+ LMC +C T ECLH FC CI+ L + +K CP C ++ R L R
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIR 70
Query: 98 ADPNFDLLISKIYPS---------RDEYEAH 119
+D ++ K+ P RD Y AH
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRRDFYAAH 101
>sp|Q9QZS2|RNF4_MOUSE E3 ubiquitin-protein ligase RNF4 OS=Mus musculus GN=Rnf4 PE=1 SV=1
Length = 194
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 12 SWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDML------KKTMTTKECLH 65
S + +Y TP+ D A PR + CPIC+D + + + EC H
Sbjct: 105 SRDKDVYVTTHTPRSTKDDG---ATGPRP-SGTVSCPICMDGYSEIVQNGRLIVSTECGH 160
Query: 66 RFCSDCIITALRSGNKECPTCRKKLVSKR 94
FCS C+ +L++ N CPTCRKK+ KR
Sbjct: 161 VFCSQCLRDSLKNANT-CPTCRKKINHKR 188
>sp|P25916|BMI1_MOUSE Polycomb complex protein BMI-1 OS=Mus musculus GN=Bmi1 PE=1 SV=1
Length = 324
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSL---R 97
L+ LMC +C T ECLH FC CI+ L + +K CP C ++ R L R
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIR 70
Query: 98 ADPNFDLLISKIYPS---------RDEYEAH 119
+D ++ K+ P RD Y AH
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRRDFYAAH 101
>sp|Q9TST0|BMI1_FELCA Polycomb complex protein BMI-1 OS=Felis catus GN=BMI1 PE=2 SV=1
Length = 326
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSL---R 97
L+ LMC +C T ECLH FC CI+ L + +K CP C ++ R L R
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIR 70
Query: 98 ADPNFDLLISKIYPS---------RDEYEAH 119
+D ++ K+ P RD Y AH
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRRDFYAAH 101
>sp|Q99PD2|RN138_RAT E3 ubiquitin-protein ligase RNF138 OS=Rattus norvegicus GN=Rnf138
PE=2 SV=1
Length = 209
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADP 100
+ CP+C ++LK + T C H FC C +TA+R CP CR + R RA P
Sbjct: 15 DFYCPVCQEVLKTPVRTAACQHVFCRKCFLTAMRESGIHCPLCRGSVT--RRERACP 69
>sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1
SV=1
Length = 475
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSK 93
+ E+ CPICLD + ++ EC H FC +CI + G CP CR++ + K
Sbjct: 10 MWEEVTCPICLDPFVEPVSI-ECGHSFCQECISQVGKGGGSVCPVCRQRFLLK 61
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSK-RSLRAD 99
L +EL C IC + + +T C H FCS C I + + +ECP CR+++V++ RSL D
Sbjct: 376 LDNELQCIICSEHFIEAVTLN-CAHSFCSYC-IKSWKKRKEECPICRQEIVTETRSLVLD 433
Query: 100 PNFDLLISKIYP 111
D ++ K+ P
Sbjct: 434 NCIDSMVDKLSP 445
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.123 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,773,182
Number of Sequences: 539616
Number of extensions: 4387317
Number of successful extensions: 23136
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 887
Number of HSP's that attempted gapping in prelim test: 21094
Number of HSP's gapped (non-prelim): 2519
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)