Query psy17011
Match_columns 321
No_of_seqs 268 out of 1638
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 19:31:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0311|consensus 100.0 9.8E-41 2.1E-45 313.1 10.6 307 8-321 7-379 (381)
2 KOG2660|consensus 100.0 1.1E-29 2.3E-34 237.6 11.8 222 33-318 4-233 (331)
3 smart00504 Ubox Modified RING 99.3 2.8E-12 6.1E-17 93.8 4.8 62 44-108 1-62 (63)
4 PF15227 zf-C3HC4_4: zinc fing 99.3 3.4E-12 7.5E-17 86.8 3.2 39 47-86 1-42 (42)
5 PF04564 U-box: U-box domain; 99.2 7.9E-12 1.7E-16 94.9 4.4 67 42-110 2-68 (73)
6 TIGR00599 rad18 DNA repair pro 99.2 2.7E-11 5.9E-16 118.7 5.5 71 37-110 19-89 (397)
7 PF14835 zf-RING_6: zf-RING of 99.1 7.6E-12 1.7E-16 91.6 -0.7 63 40-106 3-65 (65)
8 PLN03208 E3 ubiquitin-protein 99.1 7.1E-11 1.5E-15 104.8 4.1 58 33-91 7-79 (193)
9 KOG0287|consensus 99.1 3.2E-11 6.8E-16 113.9 1.9 71 37-110 16-86 (442)
10 PF13923 zf-C3HC4_2: Zinc fing 98.9 5.5E-10 1.2E-14 74.5 2.9 39 47-86 1-39 (39)
11 PF00097 zf-C3HC4: Zinc finger 98.8 2.6E-09 5.6E-14 71.7 3.1 39 47-86 1-41 (41)
12 COG5432 RAD18 RING-finger-cont 98.8 2.4E-09 5.3E-14 99.4 3.1 70 37-109 18-87 (391)
13 PF13920 zf-C3HC4_3: Zinc fing 98.8 5.1E-09 1.1E-13 73.5 3.3 47 43-91 1-48 (50)
14 KOG2177|consensus 98.8 4E-09 8.7E-14 96.5 3.3 81 37-122 6-95 (386)
15 cd00162 RING RING-finger (Real 98.8 7.7E-09 1.7E-13 69.2 3.6 44 46-89 1-44 (45)
16 PF13639 zf-RING_2: Ring finge 98.7 5.8E-09 1.2E-13 71.2 2.2 40 46-87 2-44 (44)
17 KOG0320|consensus 98.7 5.4E-09 1.2E-13 91.1 2.2 48 43-92 130-179 (187)
18 PHA02929 N1R/p28-like protein; 98.7 1.1E-08 2.4E-13 94.2 4.0 48 42-91 172-227 (238)
19 KOG0823|consensus 98.6 2.4E-08 5.1E-13 90.5 3.0 49 42-91 45-95 (230)
20 TIGR00570 cdk7 CDK-activating 98.6 1.5E-07 3.2E-12 89.4 8.1 49 43-91 2-54 (309)
21 KOG0317|consensus 98.6 4.2E-08 9.1E-13 91.4 3.9 57 34-92 228-285 (293)
22 PF13445 zf-RING_UBOX: RING-ty 98.6 3E-08 6.4E-13 67.7 2.1 36 47-84 1-43 (43)
23 smart00184 RING Ring finger. E 98.5 8.1E-08 1.7E-12 62.0 3.3 39 47-86 1-39 (39)
24 PHA02926 zinc finger-like prot 98.4 1.3E-07 2.9E-12 85.3 3.2 53 39-91 165-230 (242)
25 KOG2164|consensus 98.4 1.5E-07 3.3E-12 93.6 2.9 48 44-92 186-237 (513)
26 PF14634 zf-RING_5: zinc-RING 98.4 2.3E-07 5E-12 63.5 2.7 41 46-88 1-44 (44)
27 COG5222 Uncharacterized conser 98.4 2.5E-07 5.5E-12 86.5 3.5 65 45-109 275-339 (427)
28 COG5574 PEX10 RING-finger-cont 98.3 3.5E-07 7.6E-12 84.4 3.2 51 42-93 213-264 (271)
29 PF12678 zf-rbx1: RING-H2 zinc 98.2 8E-07 1.7E-11 67.5 3.4 41 46-87 21-73 (73)
30 KOG0978|consensus 98.1 4.7E-07 1E-11 93.9 0.2 54 37-91 636-689 (698)
31 KOG0297|consensus 98.0 3.4E-06 7.4E-11 83.4 4.2 77 34-111 11-87 (391)
32 PF11789 zf-Nse: Zinc-finger o 98.0 2.3E-06 4.9E-11 62.0 1.8 43 43-85 10-53 (57)
33 KOG4159|consensus 98.0 3.8E-06 8.3E-11 82.8 3.4 70 41-112 81-154 (398)
34 COG5152 Uncharacterized conser 98.0 4.4E-06 9.6E-11 74.2 2.8 61 44-108 196-256 (259)
35 KOG2879|consensus 97.7 2.2E-05 4.8E-10 72.9 3.7 50 42-91 237-287 (298)
36 KOG4628|consensus 97.7 2.1E-05 4.6E-10 76.0 3.6 46 45-91 230-278 (348)
37 KOG0824|consensus 97.7 2E-05 4.3E-10 74.2 2.2 48 44-92 7-54 (324)
38 KOG0802|consensus 97.6 2E-05 4.3E-10 81.2 1.9 47 43-91 290-341 (543)
39 PF12861 zf-Apc11: Anaphase-pr 97.6 4.3E-05 9.4E-10 59.5 3.2 48 44-91 21-82 (85)
40 KOG1813|consensus 97.6 2.6E-05 5.6E-10 73.2 1.9 46 44-91 241-286 (313)
41 COG5540 RING-finger-containing 97.6 4.8E-05 1E-09 71.7 2.9 48 43-91 322-372 (374)
42 COG5243 HRD1 HRD ubiquitin lig 97.4 0.00011 2.4E-09 70.9 2.9 48 42-91 285-345 (491)
43 KOG1002|consensus 97.1 0.00025 5.4E-09 71.3 1.9 50 41-91 533-586 (791)
44 KOG1645|consensus 96.9 0.0017 3.8E-08 63.5 6.2 59 43-103 3-67 (463)
45 KOG3800|consensus 96.8 0.00088 1.9E-08 62.9 3.4 51 46-97 2-56 (300)
46 KOG0804|consensus 96.6 0.00088 1.9E-08 66.2 1.9 51 37-91 168-222 (493)
47 KOG1039|consensus 96.5 0.00095 2.1E-08 64.9 1.3 50 42-91 159-221 (344)
48 KOG1785|consensus 96.3 0.0016 3.4E-08 63.6 1.2 49 46-95 371-420 (563)
49 KOG4172|consensus 96.3 0.0013 2.8E-08 46.9 0.4 46 45-91 8-54 (62)
50 PF11793 FANCL_C: FANCL C-term 96.1 0.0018 3.9E-08 48.8 0.4 48 44-91 2-66 (70)
51 PF11816 DUF3337: Domain of un 96.1 0.013 2.8E-07 56.9 6.4 61 253-320 258-330 (331)
52 KOG4265|consensus 96.1 0.0035 7.5E-08 60.6 2.4 47 43-91 289-336 (349)
53 PF14570 zf-RING_4: RING/Ubox 96.1 0.0048 1.1E-07 43.0 2.4 44 47-90 1-47 (48)
54 KOG0825|consensus 96.0 0.002 4.3E-08 67.5 0.2 49 42-91 121-171 (1134)
55 KOG4367|consensus 95.9 0.0031 6.7E-08 62.3 1.3 35 41-76 1-35 (699)
56 COG5219 Uncharacterized conser 95.9 0.0032 6.9E-08 67.2 1.5 51 41-91 1466-1523(1525)
57 KOG1734|consensus 95.9 0.0029 6.2E-08 59.0 0.9 57 35-93 216-283 (328)
58 smart00744 RINGv The RING-vari 95.7 0.011 2.4E-07 41.4 2.9 41 46-87 1-49 (49)
59 KOG3039|consensus 95.7 0.0079 1.7E-07 55.5 2.8 50 42-92 219-271 (303)
60 KOG0828|consensus 95.5 0.0058 1.3E-07 61.2 1.5 50 41-91 568-634 (636)
61 KOG3039|consensus 95.5 0.15 3.3E-06 47.2 10.4 63 15-78 11-76 (303)
62 cd01612 APG12_C Ubiquitin-like 95.3 0.053 1.2E-06 42.6 6.1 68 239-319 16-83 (87)
63 KOG4692|consensus 95.2 0.01 2.3E-07 57.3 2.2 47 43-91 421-467 (489)
64 KOG0827|consensus 95.1 0.014 3E-07 57.1 2.6 47 45-91 5-56 (465)
65 KOG1493|consensus 95.0 0.0044 9.6E-08 47.1 -0.9 46 46-91 22-81 (84)
66 PF04110 APG12: Ubiquitin-like 95.0 0.098 2.1E-06 41.1 6.6 68 240-319 16-83 (87)
67 KOG4185|consensus 94.9 0.024 5.2E-07 53.7 3.5 65 44-109 3-77 (296)
68 COG5220 TFB3 Cdk activating ki 94.8 0.007 1.5E-07 55.6 -0.3 49 43-91 9-64 (314)
69 KOG4739|consensus 94.8 0.063 1.4E-06 49.5 5.8 44 45-91 4-48 (233)
70 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.023 5E-07 53.3 3.0 54 41-96 110-166 (260)
71 KOG1571|consensus 94.7 0.018 3.8E-07 55.9 2.1 49 38-91 299-347 (355)
72 PF14447 Prok-RING_4: Prokaryo 94.4 0.017 3.8E-07 41.3 1.0 47 41-91 4-50 (55)
73 KOG3002|consensus 94.3 0.034 7.4E-07 53.2 3.2 64 39-110 43-106 (299)
74 KOG1001|consensus 94.3 0.018 3.8E-07 60.9 1.1 45 45-91 455-500 (674)
75 COG5194 APC11 Component of SCF 94.1 0.042 9.2E-07 42.2 2.5 33 58-91 49-81 (88)
76 KOG2817|consensus 93.7 0.048 1E-06 53.5 2.8 51 40-91 330-385 (394)
77 KOG4362|consensus 93.7 0.02 4.3E-07 59.9 0.2 70 38-109 15-86 (684)
78 KOG0826|consensus 93.6 0.041 8.9E-07 52.8 2.2 48 43-91 299-346 (357)
79 PF02891 zf-MIZ: MIZ/SP-RING z 93.5 0.092 2E-06 36.8 3.3 45 44-89 2-50 (50)
80 KOG4275|consensus 92.9 0.023 5E-07 53.6 -0.6 43 43-91 299-342 (350)
81 KOG3161|consensus 92.4 0.035 7.5E-07 57.4 -0.2 41 40-84 7-51 (861)
82 PF05290 Baculo_IE-1: Baculovi 90.3 0.23 5.1E-06 41.8 2.7 50 43-92 79-133 (140)
83 cd01611 GABARAP Ubiquitin doma 90.2 1.1 2.3E-05 36.9 6.5 68 239-319 41-108 (112)
84 KOG2930|consensus 89.8 0.19 4.1E-06 40.6 1.6 28 62-90 80-107 (114)
85 KOG0298|consensus 89.7 0.098 2.1E-06 58.0 -0.1 64 26-91 1135-1199(1394)
86 COG5236 Uncharacterized conser 89.2 0.27 5.9E-06 47.7 2.5 46 42-89 59-106 (493)
87 KOG1814|consensus 88.8 0.39 8.5E-06 47.5 3.4 47 42-89 182-238 (445)
88 cd01791 Ubl5 UBL5 ubiquitin-li 88.8 1.1 2.3E-05 33.8 5.1 59 242-316 14-72 (73)
89 PF08746 zf-RING-like: RING-li 88.4 0.45 9.7E-06 32.3 2.5 40 47-86 1-43 (43)
90 KOG2114|consensus 87.6 0.27 5.8E-06 52.6 1.5 43 44-90 840-882 (933)
91 PHA02825 LAP/PHD finger-like p 87.3 0.72 1.6E-05 40.1 3.7 50 41-92 5-60 (162)
92 PHA03096 p28-like protein; Pro 87.3 0.32 7E-06 46.3 1.7 44 45-88 179-231 (284)
93 PF02991 Atg8: Autophagy prote 87.2 3.1 6.7E-05 33.7 7.1 66 240-318 34-99 (104)
94 COG5175 MOT2 Transcriptional r 87.2 0.37 8E-06 46.7 2.0 47 44-91 14-64 (480)
95 PF00240 ubiquitin: Ubiquitin 87.0 0.65 1.4E-05 33.8 2.9 47 242-301 8-54 (69)
96 KOG1941|consensus 86.3 0.27 5.9E-06 48.3 0.7 48 43-91 364-416 (518)
97 smart00213 UBQ Ubiquitin homol 84.8 1.5 3.2E-05 30.9 3.8 48 242-302 12-59 (64)
98 PTZ00380 microtubule-associate 83.0 4 8.6E-05 34.0 6.0 65 241-318 42-106 (121)
99 cd01798 parkin_N amino-termina 82.0 2.2 4.8E-05 31.3 3.9 47 242-301 11-57 (70)
100 COG3813 Uncharacterized protei 81.6 1.1 2.3E-05 34.0 1.9 34 63-100 27-60 (84)
101 PF10367 Vps39_2: Vacuolar sor 81.2 0.57 1.2E-05 37.0 0.4 33 41-73 75-108 (109)
102 PF13764 E3_UbLigase_R4: E3 ub 81.2 2.8 6.1E-05 45.4 5.7 58 253-319 15-79 (802)
103 cd01805 RAD23_N Ubiquitin-like 81.2 2.7 6E-05 31.2 4.2 48 242-302 13-62 (77)
104 PF14569 zf-UDP: Zinc-binding 81.2 1.6 3.4E-05 33.5 2.8 48 44-91 9-62 (80)
105 PHA02862 5L protein; Provision 80.8 1.3 2.7E-05 38.1 2.4 46 45-92 3-54 (156)
106 cd01769 UBL Ubiquitin-like dom 80.3 2.9 6.3E-05 29.7 4.0 46 242-300 10-55 (69)
107 cd06411 PB1_p51 The PB1 domain 79.3 4.9 0.00011 30.9 5.0 60 244-314 11-73 (78)
108 PLN02638 cellulose synthase A 79.0 2.1 4.6E-05 47.4 4.0 54 37-91 11-70 (1079)
109 cd01804 midnolin_N Ubiquitin-l 78.9 3 6.5E-05 31.6 3.7 47 242-302 14-60 (78)
110 KOG3970|consensus 78.3 3.2 7E-05 38.2 4.3 49 43-92 49-106 (299)
111 PLN02436 cellulose synthase A 77.9 2.3 4.9E-05 47.1 3.8 54 37-91 30-89 (1094)
112 KOG3113|consensus 77.6 3.1 6.6E-05 38.9 4.0 56 42-100 109-167 (293)
113 COG5109 Uncharacterized conser 77.6 1.9 4.1E-05 41.5 2.7 53 38-91 330-387 (396)
114 KOG3579|consensus 77.4 1.8 4E-05 41.0 2.5 42 43-85 267-316 (352)
115 KOG2932|consensus 77.2 1.2 2.6E-05 42.7 1.3 43 45-91 91-134 (389)
116 KOG1940|consensus 77.2 1.4 3E-05 41.8 1.7 43 44-88 158-204 (276)
117 cd01794 DC_UbP_C dendritic cel 77.0 3.6 7.7E-05 30.6 3.6 47 242-301 11-57 (70)
118 cd01808 hPLIC_N Ubiquitin-like 76.4 3.9 8.4E-05 30.1 3.7 46 244-302 14-59 (71)
119 PF06906 DUF1272: Protein of u 76.3 2.4 5.1E-05 30.6 2.3 24 65-91 29-52 (57)
120 cd01806 Nedd8 Nebb8-like ubiq 76.1 4.6 9.9E-05 29.7 4.0 45 244-301 15-59 (76)
121 KOG0314|consensus 75.3 1.4 3E-05 44.5 1.2 73 33-107 208-282 (448)
122 PF10272 Tmpp129: Putative tra 75.0 1.9 4.1E-05 42.4 2.1 29 63-91 311-351 (358)
123 PLN02189 cellulose synthase 74.5 3.4 7.3E-05 45.7 4.0 54 37-91 28-87 (1040)
124 KOG3439|consensus 74.1 17 0.00036 29.9 6.9 71 237-319 42-112 (116)
125 cd01810 ISG15_repeat2 ISG15 ub 74.1 5 0.00011 29.8 3.8 46 243-301 12-57 (74)
126 KOG3899|consensus 73.7 1.9 4E-05 41.1 1.6 29 63-91 325-365 (381)
127 cd06406 PB1_P67 A PB1 domain i 72.7 8 0.00017 29.9 4.6 52 243-302 14-65 (80)
128 cd01796 DDI1_N DNA damage indu 72.4 5.2 0.00011 29.6 3.5 47 243-302 13-60 (71)
129 KOG1428|consensus 72.3 6.2 0.00013 45.3 5.3 48 43-91 3485-3544(3738)
130 cd01807 GDX_N ubiquitin-like d 72.2 5.4 0.00012 29.6 3.6 48 243-303 14-61 (74)
131 PF07191 zinc-ribbons_6: zinc- 72.1 0.29 6.3E-06 36.8 -3.3 41 44-91 1-41 (70)
132 PF12906 RINGv: RING-variant d 72.0 3.6 7.8E-05 28.3 2.4 39 47-86 1-47 (47)
133 KOG0308|consensus 71.7 3.7 8E-05 43.0 3.3 33 288-320 688-720 (735)
134 KOG1812|consensus 71.3 2.2 4.7E-05 42.4 1.6 42 43-85 145-195 (384)
135 KOG4718|consensus 71.1 2.2 4.9E-05 38.8 1.4 45 45-90 182-226 (235)
136 cd01809 Scythe_N Ubiquitin-lik 70.8 6.7 0.00014 28.4 3.8 48 242-302 13-60 (72)
137 cd01803 Ubiquitin Ubiquitin. U 70.7 6.1 0.00013 29.0 3.6 46 243-301 14-59 (76)
138 PLN02400 cellulose synthase 70.1 3.4 7.4E-05 45.9 2.8 55 36-91 29-89 (1085)
139 KOG1815|consensus 69.1 2.7 5.8E-05 42.4 1.7 38 40-78 66-104 (444)
140 KOG4445|consensus 68.9 1.5 3.2E-05 41.9 -0.1 50 42-91 113-186 (368)
141 KOG1100|consensus 68.6 2.4 5.2E-05 38.5 1.1 39 47-91 161-200 (207)
142 KOG3268|consensus 68.3 4.1 8.8E-05 36.2 2.4 29 63-91 190-228 (234)
143 cd01812 BAG1_N Ubiquitin-like 67.7 8.1 0.00018 28.0 3.7 47 243-302 13-59 (71)
144 KOG3493|consensus 67.6 3 6.4E-05 31.0 1.2 65 237-317 9-73 (73)
145 KOG2169|consensus 67.3 5.4 0.00012 42.3 3.5 83 26-110 288-374 (636)
146 PF03854 zf-P11: P-11 zinc fin 66.6 2.1 4.5E-05 29.9 0.2 30 60-91 16-46 (50)
147 cd01793 Fubi Fubi ubiquitin-li 66.6 8.6 0.00019 28.5 3.6 47 242-301 11-57 (74)
148 PF09379 FERM_N: FERM N-termin 64.0 23 0.00051 26.2 5.7 68 242-319 9-77 (80)
149 KOG2034|consensus 63.7 3.5 7.6E-05 44.6 1.4 43 35-77 808-851 (911)
150 PLN02195 cellulose synthase A 63.3 6 0.00013 43.6 3.0 47 45-91 7-59 (977)
151 PTZ00044 ubiquitin; Provisiona 62.2 11 0.00025 27.7 3.6 47 242-301 13-59 (76)
152 PF10571 UPF0547: Uncharacteri 61.3 4.9 0.00011 24.3 1.1 7 47-53 3-9 (26)
153 PLN02915 cellulose synthase A 60.6 6.7 0.00015 43.5 2.8 49 43-91 14-68 (1044)
154 PF07975 C1_4: TFIIH C1-like d 60.0 7.7 0.00017 27.4 2.1 28 59-87 23-50 (51)
155 PF11976 Rad60-SLD: Ubiquitin- 59.8 18 0.00038 26.4 4.2 48 242-302 13-61 (72)
156 cd01792 ISG15_repeat1 ISG15 ub 59.5 12 0.00026 28.2 3.4 48 244-302 17-64 (80)
157 cd01815 BMSC_UbP_N Ubiquitin-l 59.3 15 0.00032 28.1 3.7 44 247-302 18-63 (75)
158 cd01802 AN1_N ubiquitin-like d 58.9 14 0.0003 29.7 3.7 48 242-302 40-87 (103)
159 cd01797 NIRF_N amino-terminal 57.8 10 0.00022 28.8 2.6 40 253-302 23-62 (78)
160 KOG1812|consensus 55.0 6 0.00013 39.3 1.2 43 42-86 304-351 (384)
161 PF05883 Baculo_RING: Baculovi 54.0 4.8 0.0001 34.1 0.3 33 44-77 26-67 (134)
162 KOG2462|consensus 53.9 3.2 7E-05 39.2 -0.8 55 42-97 159-232 (279)
163 COG0068 HypF Hydrogenase matur 52.9 9.4 0.0002 40.7 2.3 50 42-91 99-184 (750)
164 cd01790 Herp_N Homocysteine-re 52.6 28 0.00062 26.7 4.4 49 244-304 18-67 (79)
165 PF10497 zf-4CXXC_R1: Zinc-fin 51.8 18 0.00038 29.4 3.3 48 44-91 7-72 (105)
166 PF14353 CpXC: CpXC protein 50.2 14 0.00031 30.4 2.6 46 44-91 1-49 (128)
167 cd01763 Sumo Small ubiquitin-r 49.1 40 0.00086 25.9 4.8 48 242-302 24-71 (87)
168 KOG3799|consensus 48.2 7.8 0.00017 32.9 0.7 40 39-91 60-100 (169)
169 smart00295 B41 Band 4.1 homolo 47.3 63 0.0014 28.0 6.4 67 242-319 16-83 (207)
170 PF00564 PB1: PB1 domain; Int 47.1 88 0.0019 23.2 6.4 67 243-317 15-82 (84)
171 KOG1952|consensus 47.0 12 0.00026 40.6 2.0 48 42-89 189-245 (950)
172 TIGR00622 ssl1 transcription f 46.3 22 0.00047 29.3 3.0 43 44-87 55-110 (112)
173 COG5183 SSM4 Protein involved 45.6 18 0.00039 39.2 3.0 48 43-91 11-66 (1175)
174 PF06844 DUF1244: Protein of u 44.1 14 0.0003 27.6 1.4 13 66-78 11-23 (68)
175 KOG3053|consensus 44.0 20 0.00043 33.8 2.7 54 38-91 14-82 (293)
176 PF13719 zinc_ribbon_5: zinc-r 43.5 14 0.00031 24.0 1.3 13 45-57 3-15 (37)
177 KOG0824|consensus 43.4 6.8 0.00015 37.6 -0.4 50 41-91 102-151 (324)
178 PF14446 Prok-RING_1: Prokaryo 43.3 21 0.00046 25.5 2.2 42 44-90 5-51 (54)
179 KOG0309|consensus 43.1 16 0.00035 39.2 2.2 43 44-88 1028-1073(1081)
180 PF04216 FdhE: Protein involve 40.4 4.4 9.6E-05 38.4 -2.2 47 44-91 172-222 (290)
181 cd01800 SF3a120_C Ubiquitin-li 39.8 43 0.00093 24.9 3.6 46 244-302 12-57 (76)
182 PF10235 Cript: Microtubule-as 39.8 16 0.00034 28.9 1.2 38 44-92 44-81 (90)
183 cd01813 UBP_N UBP ubiquitin pr 38.8 46 0.00099 24.8 3.6 49 244-302 14-62 (74)
184 PF07800 DUF1644: Protein of u 38.8 15 0.00032 32.1 1.0 19 43-61 1-19 (162)
185 PF05605 zf-Di19: Drought indu 36.9 15 0.00033 25.7 0.6 40 43-90 1-41 (54)
186 PF13881 Rad60-SLD_2: Ubiquiti 36.2 62 0.0013 26.4 4.2 67 242-318 16-87 (111)
187 KOG4642|consensus 36.2 36 0.00078 32.1 3.1 71 38-110 205-275 (284)
188 PRK04023 DNA polymerase II lar 36.2 25 0.00055 39.1 2.4 61 43-109 625-690 (1121)
189 KOG0311|consensus 34.9 7.2 0.00016 38.2 -1.7 33 234-270 125-157 (381)
190 KOG2113|consensus 34.7 35 0.00075 33.1 2.8 49 39-91 338-387 (394)
191 KOG2979|consensus 33.4 22 0.00047 33.4 1.2 52 38-89 170-222 (262)
192 cd00196 UBQ Ubiquitin-like pro 32.9 76 0.0016 20.3 3.7 26 242-270 10-35 (69)
193 KOG2042|consensus 32.6 65 0.0014 35.7 4.8 71 38-110 864-934 (943)
194 cd01782 AF6_RA_repeat1 Ubiquit 32.4 1.2E+02 0.0027 24.8 5.3 51 241-294 37-87 (112)
195 KOG4185|consensus 32.0 14 0.00031 34.7 -0.2 46 44-89 207-265 (296)
196 cd01799 Hoil1_N Ubiquitin-like 32.0 79 0.0017 23.7 4.0 47 242-302 15-62 (75)
197 PF14205 Cys_rich_KTR: Cystein 31.7 32 0.0007 24.7 1.6 11 80-90 28-38 (55)
198 cd01814 NTGP5 Ubiquitin-like N 31.4 74 0.0016 26.2 3.9 49 245-302 21-72 (113)
199 PF11543 UN_NPL4: Nuclear pore 31.4 20 0.00043 27.5 0.5 53 242-304 16-70 (80)
200 cd00065 FYVE FYVE domain; Zinc 30.3 32 0.0007 23.8 1.5 31 46-76 4-37 (57)
201 TIGR01562 FdhE formate dehydro 30.2 15 0.00033 35.4 -0.3 46 43-89 183-233 (305)
202 KOG0825|consensus 30.1 41 0.00089 36.5 2.7 47 44-90 96-153 (1134)
203 TIGR00601 rad23 UV excision re 29.2 70 0.0015 31.8 4.1 49 242-303 13-64 (378)
204 cd01795 USP48_C USP ubiquitin- 29.1 91 0.002 25.3 3.9 27 242-271 17-43 (107)
205 cd00350 rubredoxin_like Rubred 28.9 37 0.0008 21.4 1.4 10 80-89 17-26 (33)
206 smart00064 FYVE Protein presen 28.7 42 0.0009 24.2 1.9 33 44-76 10-45 (68)
207 PF09889 DUF2116: Uncharacteri 28.5 97 0.0021 22.5 3.7 12 80-91 3-14 (59)
208 KOG2068|consensus 27.6 67 0.0015 31.3 3.5 47 44-91 249-298 (327)
209 PRK11088 rrmA 23S rRNA methylt 27.5 35 0.00075 31.7 1.6 23 44-67 2-27 (272)
210 KOG2807|consensus 27.2 39 0.00085 32.9 1.8 45 42-87 328-374 (378)
211 smart00154 ZnF_AN1 AN1-like Zi 27.0 43 0.00094 22.0 1.5 23 47-69 1-24 (39)
212 KOG3476|consensus 26.7 9.8 0.00021 29.8 -1.8 41 44-95 54-94 (100)
213 PF13717 zinc_ribbon_4: zinc-r 26.7 39 0.00085 21.8 1.3 11 45-55 3-13 (36)
214 PF15616 TerY-C: TerY-C metal 26.5 30 0.00065 29.3 0.8 49 35-91 68-116 (131)
215 KOG1654|consensus 26.0 3.8E+02 0.0082 22.1 7.0 64 242-318 48-111 (116)
216 PF13248 zf-ribbon_3: zinc-rib 25.9 15 0.00032 21.9 -0.8 10 80-89 16-25 (26)
217 PRK06266 transcription initiat 25.9 17 0.00038 32.1 -0.7 15 79-93 135-149 (178)
218 KOG2231|consensus 25.7 46 0.001 35.5 2.2 44 46-90 2-51 (669)
219 PRK11595 DNA utilization prote 25.6 47 0.001 30.2 2.0 38 46-90 7-44 (227)
220 PF02318 FYVE_2: FYVE-type zin 25.6 33 0.00072 28.0 0.9 46 43-88 53-102 (118)
221 PF10146 zf-C4H2: Zinc finger- 25.4 55 0.0012 30.3 2.4 27 67-94 196-222 (230)
222 COG1198 PriA Primosomal protei 24.9 52 0.0011 35.6 2.5 72 38-112 429-506 (730)
223 PRK14559 putative protein seri 24.8 36 0.00079 36.2 1.3 14 287-300 515-528 (645)
224 PF10186 Atg14: UV radiation r 24.3 2.9E+02 0.0063 25.4 7.2 18 253-270 202-219 (302)
225 PRK14714 DNA polymerase II lar 24.2 55 0.0012 37.4 2.6 48 44-92 667-721 (1337)
226 TIGR00143 hypF [NiFe] hydrogen 24.1 37 0.0008 36.6 1.2 69 43-111 67-174 (711)
227 PRK03564 formate dehydrogenase 23.8 23 0.00049 34.3 -0.4 45 43-88 186-234 (309)
228 COG4098 comFA Superfamily II D 23.8 28 0.00061 34.4 0.2 35 38-73 33-68 (441)
229 KOG1609|consensus 23.5 46 0.001 31.2 1.6 47 44-91 78-134 (323)
230 KOG0289|consensus 23.3 77 0.0017 32.1 3.1 46 45-91 1-46 (506)
231 PLN02248 cellulose synthase-li 22.9 53 0.0011 37.0 2.1 29 62-91 149-177 (1135)
232 PF01363 FYVE: FYVE zinc finge 22.5 31 0.00068 25.0 0.2 32 43-74 8-42 (69)
233 COG4647 AcxC Acetone carboxyla 22.5 42 0.0009 28.4 0.9 20 49-69 62-81 (165)
234 PF01428 zf-AN1: AN1-like Zinc 21.9 48 0.0011 22.1 1.0 25 47-71 1-27 (43)
235 PF09538 FYDLN_acid: Protein o 21.8 50 0.0011 26.9 1.2 24 68-91 12-37 (108)
236 KOG3362|consensus 21.7 30 0.00065 29.8 -0.1 28 45-74 119-147 (156)
237 COG3492 Uncharacterized protei 21.6 45 0.00098 26.5 0.9 13 66-78 42-54 (104)
238 PF12773 DZR: Double zinc ribb 21.6 72 0.0016 21.5 1.9 27 65-91 12-40 (50)
239 PF13240 zinc_ribbon_2: zinc-r 21.2 16 0.00034 21.4 -1.3 9 81-89 14-22 (23)
240 cd01768 RA RA (Ras-associating 21.1 3.6E+02 0.0077 20.1 7.4 68 241-315 14-82 (87)
241 TIGR00373 conserved hypothetic 21.0 22 0.00048 30.8 -1.0 15 79-93 127-141 (158)
242 PF04423 Rad50_zn_hook: Rad50 21.0 59 0.0013 22.6 1.4 10 82-91 22-31 (54)
243 KOG0010|consensus 20.8 97 0.0021 31.8 3.3 44 244-300 29-72 (493)
244 KOG3993|consensus 20.8 12 0.00025 37.6 -3.1 50 39-96 262-311 (500)
245 PF06676 DUF1178: Protein of u 20.7 1.1E+02 0.0023 26.5 3.1 24 63-91 10-43 (148)
No 1
>KOG0311|consensus
Probab=100.00 E-value=9.8e-41 Score=313.06 Aligned_cols=307 Identities=37% Similarity=0.570 Sum_probs=223.8
Q ss_pred CCCCccccceeeeccCCcccccCccccccCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcc
Q psy17011 8 GTTKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCR 87 (321)
Q Consensus 8 ~~~~~~~~~~~e~~~~~~~~i~~~~~~~~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr 87 (321)
..+++|||++|+++|+|+.+++|++++.+.++.|+.+++|+||+++++..+++++|+|.||..||...++.++..||.||
T Consensus 7 a~~e~~El~l~~~er~p~~~~~d~~Ei~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcR 86 (381)
T KOG0311|consen 7 AREEGRELELDSKERSPSSYNGDPSEIMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCR 86 (381)
T ss_pred ccchhhhcchhhhhcChhhhcCCchhheecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCChHHHHHHHHHcCChHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHhhhhhccCC-CCCC
Q psy17011 88 KKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNKSHSQAALVQSINEGIKLQSQHRLQRTKKNIQGN-EENT 166 (321)
Q Consensus 88 ~~~~~~~~l~~n~~l~~lv~kl~~~~~~c~~h~e~l~~~~~~~~~~~~l~~~~~e~~k~q~q~r~~~lk~~~~e~-~~~~ 166 (321)
+.+.+++.++.|+.+..||.+++++...++.++.+++++....+.+ ++..+++++.+.|.+.+.+|+....... ..+.
T Consensus 87 k~l~SkrsLr~Dp~fdaLis~i~~sie~~e~~q~~~~ekd~~~~~q-~i~~si~~~~~~qs~~~~kr~a~~~~~s~r~g~ 165 (381)
T KOG0311|consen 87 KKLVSKRSLRIDPNFDALISKIYPSIEEYEAPQPRFMEKDDSAQIQ-YIKTSINAAVDHQSSYLTKRKALEELRSIRWGG 165 (381)
T ss_pred hhccccccCCCCccHHHHHHHHhccHHHHhccchhHHhhHHHHhHH-HHhhhHHHHHhhhhhhhhhhhcccccccccccC
Confidence 9999999999999999999999999999999999999998888887 8889999999999999988876522100 0011
Q ss_pred CCCCCCCCCcc-cC-CCCCCCCCCcccccCCC--------CCCCCCCCCCCCCCCCCCcccccc------cccCCC-CCC
Q psy17011 167 PDISNTDQTSV-QQ-QPSPQPTTSNAIKNQLS--------PAVPKSPEARPSSAASSSTTKVSK------KTAKSD-VMT 229 (321)
Q Consensus 167 ~~~~~~~~~~~-~~-~~~~~~~~s~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~------e~~~~~-~~~ 229 (321)
++...+..+.. ++ ..++..++.+...+... ...++...+++.+ +.|.++.. .|.+.+ -++
T Consensus 166 Gs~~~gn~r~~~~s~~~a~~ea~~~~~~n~rg~~ss~d~~~~~~~~~~S~d~~---~~~~~~s~as~~~~~~~~a~te~~ 242 (381)
T KOG0311|consen 166 GSRRRGNVRNVEQSKKSAPKEADGNDDENDRGKDSSSDELMDFPREIRSSDRE---QTHPSSSGASMNDSNCAGADTEDV 242 (381)
T ss_pred CCCCCCCcccchhccccCCccCCCccccccccccccccccccccccccccccc---cCCCCccccccCCCcccCCCCccc
Confidence 11111111110 01 11111111111110000 0000000011110 11111110 111110 011
Q ss_pred cccc----------cCCCCCCCCeEEcCCCCCcchhhhHHHHHHHHhccCCC--C-------------------------
Q psy17011 230 SELE----------TDDTSETDDKISTVESATDGEVDHLTKYLTMRLRLEGS--D------------------------- 272 (321)
Q Consensus 230 ~e~e----------~~~~~~~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~--~------------------------- 272 (321)
.+++ .....-+.+|...+.+ ++++|++||++.|.+++.. +
T Consensus 243 ~~~~~i~r~~v~~~e~~~s~r~~~~~~t~n---~~~~~~~k~~~vr~a~~~~~~e~~~~~~G~S~~~~~~~~~~~~~~~~ 319 (381)
T KOG0311|consen 243 RDSSTISRTLVWNRESSESGRGGTRSNTRN---GNNKMGRKSLAVRNALEVRLSEYDGSVEGTSNIKVAKKKPLKREEVE 319 (381)
T ss_pred ccccccccccccccccchhccCCccccccc---cccccccchhhhhHHHHHHhhhhcccccccccccccccCCccccccc
Confidence 2222 1122244599999999 9999999999999988651 0
Q ss_pred ------c-----CCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeeeccC
Q psy17011 273 ------I-----CDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWKKV 321 (321)
Q Consensus 273 ------~-----~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~~~~ 321 (321)
+ .+.+|+|||++..++|+.|+|+.||..|.++||++++||+|+|.++|.
T Consensus 320 ~~~~~~~~~d~~~enn~~iy~a~~~~~~~~Lng~~Tls~v~~df~kvn~~m~l~~~~kk~ 379 (381)
T KOG0311|consen 320 LLVELIHPLDTASENNYTIYIATSKDQFTSLNGDETLSLVKEDFWKVNEPMELSYHEKKI 379 (381)
T ss_pred ccccccccccccccccceeEeecCCCceEEecccchHHHHhhhhhhcccchhhhhchhcc
Confidence 1 125899999999999999999999999999999999999999999984
No 2
>KOG2660|consensus
Probab=99.96 E-value=1.1e-29 Score=237.59 Aligned_cols=222 Identities=23% Similarity=0.380 Sum_probs=145.6
Q ss_pred ccccCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccccc---ccCCCChHHHHHHHHH
Q psy17011 33 EIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSK---RSLRADPNFDLLISKI 109 (321)
Q Consensus 33 ~~~~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~---~~l~~n~~l~~lv~kl 109 (321)
+..+....++..++|.+|.+||++++++.+|.|+||++||.+++.. +.+||.|...++.. .+++.|.+|++||++|
T Consensus 4 ~~~vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 4 PRRVKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred chhhhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 3456677899999999999999999999999999999999999997 88999999998753 4889999999999999
Q ss_pred cCChHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCCCcccCCCCCCCCCCc
Q psy17011 110 YPSRDEYEAHQVRVLEKLNKSHSQAALVQSINEGIKLQSQHRLQRTKKNIQGNEENTPDISNTDQTSVQQQPSPQPTTSN 189 (321)
Q Consensus 110 ~~~~~~c~~h~e~l~~~~~~~~~~~~l~~~~~e~~k~q~q~r~~~lk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 189 (321)
+|++.+-+..+.+-|.+....- .+......+ +....+.+ .-.++ +.-....+
T Consensus 83 VPgl~erE~k~~rdFy~~~~~~--d~~~~~~~~-------------~~~~~~~e------k~~~t-------~~~~~s~~ 134 (331)
T KOG2660|consen 83 VPGLQEREMKRRRDFYKSRPLV--DVPAGDTPE-------------RGHVLGEE------KVPDT-------SDEIASLS 134 (331)
T ss_pred cchHHHHHHHHHHHHHHhCCCc--ccCCCCCcc-------------cccccCcc------cCCCc-------hhhhhccc
Confidence 9998865554444444322200 000000000 00000000 00000 00000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCcccccC-CCCCCCCeEEcCCCCCcchhhhHHHHHHHHhc-
Q psy17011 190 AIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAKSDVMTSELETD-DTSETDDKISTVESATDGEVDHLTKYLTMRLR- 267 (321)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~~-~~~~~~ryi~~sa~~~~aTV~HL~KyLa~rl~- 267 (321)
.+ -.....++.++.- .++.+|.... +.+. .|||+|||+ |||.||+|||+.|++
T Consensus 135 l~-----------------~~~~~~~r~d~~~----~~~~~e~~~~~k~l~-~~fvrcsa~---~Tv~hlkkfl~~k~~~ 189 (331)
T KOG2660|consen 135 LE-----------------VEDFKQNRLDEQV----SVGLDEGKDTLKDLV-RRFLRCSAA---ATVNHLKKFLRKKMDN 189 (331)
T ss_pred cc-----------------hhhcccchhhhhh----hcCCCcccccccccc-cceEeccHH---HHHHHHHHHHHHHhcc
Confidence 00 0000112222110 0011222111 2222 599999999 999999999999999
Q ss_pred cCC-CCcCCcceEEEeecCCCceeeCCCCchHHHHHHhh-cC-CCCCeEEEeee
Q psy17011 268 LEG-SDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKY-WK-SEKPLEVYYSW 318 (321)
Q Consensus 268 l~~-~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~-Wk-~~~Pl~l~Y~~ 318 (321)
++. .+|+ ++| +++ +|++++||++|++.| |+ ++.||.|+|+.
T Consensus 190 ~~~~~~id---i~~-----~d~--~l~~~~TLk~i~~~~~~~~r~~pL~l~y~v 233 (331)
T KOG2660|consen 190 LSNKSEID---ILC-----EEE--LLGDYYTLKDIAYAYRWRSRDPPLPLRYRV 233 (331)
T ss_pred ccchhhhe---eec-----CCc--cccchhhhhhhhhhhcccccCCcceeEecc
Confidence 543 4666 888 588 999999999999999 88 99999999993
No 3
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.30 E-value=2.8e-12 Score=93.77 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=55.9
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHH
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISK 108 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~k 108 (321)
++.||||.+++.+|+.++ |||+||+.||..|+.. ...||.|+.++. ..++.++..+++.|+.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~-~G~v~~~~~i~~~~~~-~~~cP~~~~~~~-~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVILP-SGQTYERRAIEKWLLS-HGTDPVTGQPLT-HEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEECC-CCCEEeHHHHHHHHHH-CCCCCCCcCCCC-hhhceeCHHHHHHHHh
Confidence 578999999999999998 9999999999999986 678999999995 6788899999888764
No 4
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.26 E-value=3.4e-12 Score=86.78 Aligned_cols=39 Identities=38% Similarity=1.058 Sum_probs=31.1
Q ss_pred ccccccCcccceecCCCCCcccHhHHHHHHhcCC---CCCCCc
Q psy17011 47 CPICLDMLKKTMTTKECLHRFCSDCIITALRSGN---KECPTC 86 (321)
Q Consensus 47 C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~---~~CP~C 86 (321)
||||+++|.+||+++ |||+||+.||.++++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999 999999999999998532 479987
No 5
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.23 E-value=7.9e-12 Score=94.93 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=56.0
Q ss_pred CCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 42 HSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
-++|.|||+.++|.+||.++ +||+|++.||.+|+..+...||.|+..+. ...+.+|..|++.|..+.
T Consensus 2 P~~f~CpIt~~lM~dPVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~-~~~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLS-ESDLIPNRALKSAIEEWC 68 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-S-GGGSEE-HHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCC-cccceECHHHHHHHHHHH
Confidence 36899999999999999999 99999999999999976789999999987 678999999999999884
No 6
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=2.7e-11 Score=118.74 Aligned_cols=71 Identities=31% Similarity=0.608 Sum_probs=63.6
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
.+..|+..+.|+||+++|.+|+.++ |||+||..||..|+.. ...||.|+..+. ...++.|..|.+||..+.
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~Pvitp-CgH~FCs~CI~~~l~~-~~~CP~Cr~~~~-~~~Lr~N~~L~~iVe~~~ 89 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVLTS-CSHTFCSLCIRRCLSN-QPKCPLCRAEDQ-ESKLRSNWLVSEIVESFK 89 (397)
T ss_pred cccccccccCCCcCchhhhCccCCC-CCCchhHHHHHHHHhC-CCCCCCCCCccc-cccCccchHHHHHHHHHH
Confidence 4577889999999999999999988 9999999999999985 458999999987 558899999999998774
No 7
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.11 E-value=7.6e-12 Score=91.57 Aligned_cols=63 Identities=33% Similarity=0.758 Sum_probs=36.2
Q ss_pred CCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHH
Q psy17011 40 SLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLI 106 (321)
Q Consensus 40 ~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv 106 (321)
.++..+.|++|.++|++||.+..|.|.||+.||...+. ..||+|..+.. ..+++.|+.|++||
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw-~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAW-IQDIQINRQLDSMI 65 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S--SS----HHHHHHH
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHH-HHHHHhhhhhhccC
Confidence 35567999999999999998777999999999987664 35999999998 77899999999886
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.08 E-value=7.1e-11 Score=104.83 Aligned_cols=58 Identities=28% Similarity=0.595 Sum_probs=48.5
Q ss_pred ccccCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhc---------------CCCCCCCcccccc
Q psy17011 33 EIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS---------------GNKECPTCRKKLV 91 (321)
Q Consensus 33 ~~~~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~---------------~~~~CP~Cr~~~~ 91 (321)
+....+.+..+++.|+||++.+.+|+.+. |||.||..||..|+.. +...||+||..+.
T Consensus 7 ~~~~~~~~~~~~~~CpICld~~~dPVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 7 EDDTTLVDSGGDFDCNICLDQVRDPVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred cccceeccCCCccCCccCCCcCCCcEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 33445556667899999999999999998 9999999999999852 2358999999986
No 9
>KOG0287|consensus
Probab=99.08 E-value=3.2e-11 Score=113.87 Aligned_cols=71 Identities=32% Similarity=0.668 Sum_probs=63.4
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
.+..|...|+|.||.+||.-|+.++ |+|+||.-||..+|.. ...||.|+..+. ...++.++.+.+||..+.
T Consensus 16 slk~lD~lLRC~IC~eyf~ip~itp-CsHtfCSlCIR~~L~~-~p~CP~C~~~~~-Es~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 16 SLKTLDDLLRCGICFEYFNIPMITP-CSHTFCSLCIRKFLSY-KPQCPTCCVTVT-ESDLRNNRILDEIVKSLN 86 (442)
T ss_pred hhhhhHHHHHHhHHHHHhcCceecc-ccchHHHHHHHHHhcc-CCCCCceecccc-hhhhhhhhHHHHHHHHHH
Confidence 4566888999999999999999999 9999999999999985 678999999997 668889999999987763
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.94 E-value=5.5e-10 Score=74.51 Aligned_cols=39 Identities=46% Similarity=1.146 Sum_probs=32.7
Q ss_pred ccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCc
Q psy17011 47 CPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTC 86 (321)
Q Consensus 47 C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~C 86 (321)
|+||.+.+.+|+.+..|||.||..||.+|++. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999544449999999999999997 7899987
No 11
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.83 E-value=2.6e-09 Score=71.65 Aligned_cols=39 Identities=44% Similarity=1.095 Sum_probs=35.2
Q ss_pred ccccccCcccce-ecCCCCCcccHhHHHHHHh-cCCCCCCCc
Q psy17011 47 CPICLDMLKKTM-TTKECLHRFCSDCIITALR-SGNKECPTC 86 (321)
Q Consensus 47 C~IC~~~l~~Pv-tl~~CgHtFC~~CI~~~l~-~~~~~CP~C 86 (321)
|+||++.+.+|+ .++ |||.||..||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 555 999999999999998 556789987
No 12
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.80 E-value=2.4e-09 Score=99.44 Aligned_cols=70 Identities=31% Similarity=0.525 Sum_probs=57.6
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHH
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKI 109 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl 109 (321)
++..|...++|.||..++.-|+.++ |||+||.-||.++|.. ...||+||.... ...++.+..++.+++.+
T Consensus 18 SL~~LDs~lrC~IC~~~i~ip~~Tt-CgHtFCslCIR~hL~~-qp~CP~Cr~~~~-esrlr~~s~~~ei~es~ 87 (391)
T COG5432 18 SLKGLDSMLRCRICDCRISIPCETT-CGHTFCSLCIRRHLGT-QPFCPVCREDPC-ESRLRGSSGSREINESH 87 (391)
T ss_pred chhcchhHHHhhhhhheeecceecc-cccchhHHHHHHHhcC-CCCCccccccHH-hhhcccchhHHHHHHhh
Confidence 4567888999999999999999999 9999999999999986 567999999876 33455566666665544
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.77 E-value=5.1e-09 Score=73.51 Aligned_cols=47 Identities=32% Similarity=0.856 Sum_probs=40.7
Q ss_pred CcccccccccCcccceecCCCCCc-ccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKKTMTTKECLHR-FCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~CgHt-FC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
++..|.||++...+++.++ |||. ||..|+.+|+. ....||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLP-CGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEET-TCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeC-CCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 3678999999999999999 9999 99999999998 5789999999874
No 14
>KOG2177|consensus
Probab=98.76 E-value=4e-09 Score=96.55 Aligned_cols=81 Identities=30% Similarity=0.667 Sum_probs=65.5
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHcCCh---
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSR--- 113 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~~~~--- 113 (321)
....+.+++.|+||+++|.+|+.++ |||+||+.||..++. ....||.||. .. . ++.+|..+.+++..+....
T Consensus 6 ~~~~~~~~~~C~iC~~~~~~p~~l~-C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~-~~~~n~~l~~~~~~~~~~~~~~ 80 (386)
T KOG2177|consen 6 LLEVLQEELTCPICLEYFREPVLLP-CGHNFCRACLTRSWE-GPLSCPVCRP-PS-R-NLRPNVLLANLVERLRQLRLSR 80 (386)
T ss_pred hhhhccccccChhhHHHhhcCcccc-ccchHhHHHHHHhcC-CCcCCcccCC-ch-h-ccCccHHHHHHHHHHHhcCCcc
Confidence 4556778999999999999997777 999999999999988 6789999996 43 2 7779999999998876421
Q ss_pred ------HHHHHHHHH
Q psy17011 114 ------DEYEAHQVR 122 (321)
Q Consensus 114 ------~~c~~h~e~ 122 (321)
..|..|++.
T Consensus 81 ~~~~~~~~c~~~~~~ 95 (386)
T KOG2177|consen 81 PLGSKEELCEKHGEE 95 (386)
T ss_pred cccccchhhhhcCCc
Confidence 156666663
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.76 E-value=7.7e-09 Score=69.23 Aligned_cols=44 Identities=41% Similarity=0.981 Sum_probs=39.1
Q ss_pred cccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccc
Q psy17011 46 MCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKK 89 (321)
Q Consensus 46 ~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~ 89 (321)
.|+||.+.+.+++.+..|||.||..|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 59999999988887777999999999999998657789999875
No 16
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.72 E-value=5.8e-09 Score=71.24 Aligned_cols=40 Identities=43% Similarity=0.973 Sum_probs=34.0
Q ss_pred cccccccCcc---cceecCCCCCcccHhHHHHHHhcCCCCCCCcc
Q psy17011 46 MCPICLDMLK---KTMTTKECLHRFCSDCIITALRSGNKECPTCR 87 (321)
Q Consensus 46 ~C~IC~~~l~---~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr 87 (321)
.|+||++.+. .++.++ |||.||..||.+|++. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999885 456777 9999999999999996 57999997
No 17
>KOG0320|consensus
Probab=98.71 E-value=5.4e-09 Score=91.07 Aligned_cols=48 Identities=50% Similarity=1.097 Sum_probs=41.0
Q ss_pred CcccccccccCccc--ceecCCCCCcccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 43 SELMCPICLDMLKK--TMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 43 ~~l~C~IC~~~l~~--Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
.-+.||||++-+.+ |+.+. |||.||+.||...++. ...||+|++.+..
T Consensus 130 ~~~~CPiCl~~~sek~~vsTk-CGHvFC~~Cik~alk~-~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTK-CGHVFCSQCIKDALKN-TNKCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhccccccc-cchhHHHHHHHHHHHh-CCCCCCcccccch
Confidence 34899999998875 56777 9999999999999986 5689999998763
No 18
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.70 E-value=1.1e-08 Score=94.18 Aligned_cols=48 Identities=27% Similarity=0.800 Sum_probs=40.2
Q ss_pred CCcccccccccCcccc--------eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 42 HSELMCPICLDMLKKT--------MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~P--------vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
..+..|+||++.+.++ +.++ |||.||..||.+|+.. ...||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~-C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSN-CNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCC-CCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4578999999987653 3345 9999999999999985 679999999875
No 19
>KOG0823|consensus
Probab=98.60 E-value=2.4e-08 Score=90.53 Aligned_cols=49 Identities=37% Similarity=0.827 Sum_probs=44.2
Q ss_pred CCcccccccccCcccceecCCCCCcccHhHHHHHHhc--CCCCCCCcccccc
Q psy17011 42 HSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS--GNKECPTCRKKLV 91 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~--~~~~CP~Cr~~~~ 91 (321)
-..+.|.||++.-++||.+. |||.||=.||.+|+.. +...||+|+..+.
T Consensus 45 ~~~FdCNICLd~akdPVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCceeeeeeccccCCCEEee-cccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 36799999999999999999 9999999999999984 3468999999886
No 20
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=1.5e-07 Score=89.44 Aligned_cols=49 Identities=24% Similarity=0.664 Sum_probs=39.2
Q ss_pred CcccccccccC-cccce---ecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDM-LKKTM---TTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~-l~~Pv---tl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
++-.||+|... +..|- .+.+|||.||.+||...|..+...||.|+..+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr 54 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR 54 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence 35689999993 33442 344699999999999988777789999999887
No 21
>KOG0317|consensus
Probab=98.57 E-value=4.2e-08 Score=91.43 Aligned_cols=57 Identities=32% Similarity=0.641 Sum_probs=47.4
Q ss_pred cccCccCCC-CcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 34 IAVSPRSLH-SELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 34 ~~~~~~~l~-~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
.......+. ....|.+|++-..+|..++ |||.||-+||..|... ...||.||..+..
T Consensus 228 ~s~~~~~i~~a~~kC~LCLe~~~~pSaTp-CGHiFCWsCI~~w~~e-k~eCPlCR~~~~p 285 (293)
T KOG0317|consen 228 DSNSLSSIPEATRKCSLCLENRSNPSATP-CGHIFCWSCILEWCSE-KAECPLCREKFQP 285 (293)
T ss_pred hccCCccCCCCCCceEEEecCCCCCCcCc-CcchHHHHHHHHHHcc-ccCCCcccccCCC
Confidence 333444443 5589999999999999999 9999999999999985 5679999999873
No 22
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.57 E-value=3e-08 Score=67.73 Aligned_cols=36 Identities=36% Similarity=0.962 Sum_probs=22.9
Q ss_pred ccccccCccc----ceecCCCCCcccHhHHHHHHhcC---CCCCC
Q psy17011 47 CPICLDMLKK----TMTTKECLHRFCSDCIITALRSG---NKECP 84 (321)
Q Consensus 47 C~IC~~~l~~----Pvtl~~CgHtFC~~CI~~~l~~~---~~~CP 84 (321)
||||.+ +.+ |+.++ |||+||+.||.+++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 888 99999 99999999999999853 45676
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.52 E-value=8.1e-08 Score=61.96 Aligned_cols=39 Identities=51% Similarity=1.179 Sum_probs=35.3
Q ss_pred ccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCc
Q psy17011 47 CPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTC 86 (321)
Q Consensus 47 C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~C 86 (321)
|+||++...+++.++ |||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999989999998 999999999999998556789987
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=98.43 E-value=1.3e-07 Score=85.29 Aligned_cols=53 Identities=28% Similarity=0.653 Sum_probs=40.2
Q ss_pred cCCCCcccccccccCcccc--------eecCCCCCcccHhHHHHHHhcC-----CCCCCCcccccc
Q psy17011 39 RSLHSELMCPICLDMLKKT--------MTTKECLHRFCSDCIITALRSG-----NKECPTCRKKLV 91 (321)
Q Consensus 39 ~~l~~~l~C~IC~~~l~~P--------vtl~~CgHtFC~~CI~~~l~~~-----~~~CP~Cr~~~~ 91 (321)
.....+..|+||++...++ -.++.|+|.||..||..|.... ...||.||..+.
T Consensus 165 ~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 165 YRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3345689999999976442 1233599999999999999742 346999999875
No 25
>KOG2164|consensus
Probab=98.39 E-value=1.5e-07 Score=93.64 Aligned_cols=48 Identities=33% Similarity=0.829 Sum_probs=43.6
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcC----CCCCCCccccccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSG----NKECPTCRKKLVS 92 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~----~~~CP~Cr~~~~~ 92 (321)
+..||||++...-|+.+. |||.||..||.++|..+ ...||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 789999999999999999 99999999999999753 4689999999874
No 26
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.38 E-value=2.3e-07 Score=63.47 Aligned_cols=41 Identities=34% Similarity=0.891 Sum_probs=33.9
Q ss_pred cccccccCc---ccceecCCCCCcccHhHHHHHHhcCCCCCCCccc
Q psy17011 46 MCPICLDML---KKTMTTKECLHRFCSDCIITALRSGNKECPTCRK 88 (321)
Q Consensus 46 ~C~IC~~~l---~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~ 88 (321)
.|++|...+ ..|+.++ |||+||..|+.... .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999988 3466777 99999999999887 34678999985
No 27
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.36 E-value=2.5e-07 Score=86.48 Aligned_cols=65 Identities=38% Similarity=0.731 Sum_probs=53.0
Q ss_pred ccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHH
Q psy17011 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKI 109 (321)
Q Consensus 45 l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl 109 (321)
|.|++|..++++|+.+++|+|.||..||...|....+.||.|...-...+.+.+|.....-|+++
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~ 339 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKA 339 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHH
Confidence 99999999999999999999999999999999877899999976444355666666555544444
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.5e-07 Score=84.39 Aligned_cols=51 Identities=29% Similarity=0.671 Sum_probs=43.4
Q ss_pred CCcccccccccCcccceecCCCCCcccHhHHHH-HHhcCCCCCCCcccccccc
Q psy17011 42 HSELMCPICLDMLKKTMTTKECLHRFCSDCIIT-ALRSGNKECPTCRKKLVSK 93 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~-~l~~~~~~CP~Cr~~~~~~ 93 (321)
..+..|+||++....|..++ |||.||-.||.. |-....-.||.||.....+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCccccc-ccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 45889999999999999999 999999999999 5554444699999988743
No 29
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.25 E-value=8e-07 Score=67.48 Aligned_cols=41 Identities=37% Similarity=0.779 Sum_probs=32.4
Q ss_pred cccccccCccc------------ceecCCCCCcccHhHHHHHHhcCCCCCCCcc
Q psy17011 46 MCPICLDMLKK------------TMTTKECLHRFCSDCIITALRSGNKECPTCR 87 (321)
Q Consensus 46 ~C~IC~~~l~~------------Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr 87 (321)
.|+||++.|.+ ++....|||.|+..||.+|+.. ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 39999999943 3444459999999999999986 56999997
No 30
>KOG0978|consensus
Probab=98.15 E-value=4.7e-07 Score=93.93 Aligned_cols=54 Identities=28% Similarity=0.710 Sum_probs=49.3
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
-++.+..-|+||+|..-+++.|.+. |||.||..||.+.+......||.|...|.
T Consensus 636 Elk~yK~~LkCs~Cn~R~Kd~vI~k-C~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 636 ELKEYKELLKCSVCNTRWKDAVITK-CGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred HHHHHHhceeCCCccCchhhHHHHh-cchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3566778899999999999999999 99999999999999877889999999997
No 31
>KOG0297|consensus
Probab=98.05 E-value=3.4e-06 Score=83.40 Aligned_cols=77 Identities=30% Similarity=0.738 Sum_probs=61.2
Q ss_pred cccCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHcC
Q psy17011 34 IAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYP 111 (321)
Q Consensus 34 ~~~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~~ 111 (321)
..-..+.+.+++.|++|..++.+|+.+..|||.||..|+..|+.. ...||.|+..+.....+........++.++-.
T Consensus 11 ~~~~~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i 87 (391)
T KOG0297|consen 11 LKHLGRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPI 87 (391)
T ss_pred ccccCCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhccc
Confidence 334455588999999999999999996349999999999999986 78999999988755555556666677765543
No 32
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.03 E-value=2.3e-06 Score=61.98 Aligned_cols=43 Identities=33% Similarity=0.757 Sum_probs=31.3
Q ss_pred CcccccccccCcccceecCCCCCcccHhHHHHHHh-cCCCCCCC
Q psy17011 43 SELMCPICLDMLKKTMTTKECLHRFCSDCIITALR-SGNKECPT 85 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~-~~~~~CP~ 85 (321)
-.+.|||.+..|.+||....|||+|.+..|..++. .+...||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 46899999999999999866999999999999994 34568998
No 33
>KOG4159|consensus
Probab=98.00 E-value=3.8e-06 Score=82.79 Aligned_cols=70 Identities=33% Similarity=0.657 Sum_probs=54.9
Q ss_pred CCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCC----CChHHHHHHHHHcCC
Q psy17011 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLR----ADPNFDLLISKIYPS 112 (321)
Q Consensus 41 l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~----~n~~l~~lv~kl~~~ 112 (321)
+..++.|.||..++.+||+++ |||+||..||.+.+. ....||.||..+....... +++.+..++.+++++
T Consensus 81 ~~sef~c~vc~~~l~~pv~tp-cghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTP-CGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccchhhhhhhHhhcCCCcccc-ccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 468999999999999999997 999999999999887 4789999999997422111 244455666666653
No 34
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.96 E-value=4.4e-06 Score=74.18 Aligned_cols=61 Identities=26% Similarity=0.612 Sum_probs=50.0
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHH
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISK 108 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~k 108 (321)
.|.|.||...+..||.+. |||.||..|..+-.+. ...|-+|++... ..+.+...++.|+.+
T Consensus 196 PF~C~iCKkdy~spvvt~-CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~--G~f~V~~d~~kmL~~ 256 (259)
T COG5152 196 PFLCGICKKDYESPVVTE-CGHSFCSLCAIRKYQK-GDECGVCGKATY--GRFWVVSDLQKMLNK 256 (259)
T ss_pred ceeehhchhhccchhhhh-cchhHHHHHHHHHhcc-CCcceecchhhc--cceeHHhhHHHHHhh
Confidence 489999999999999999 9999999999887775 568999998774 445566666666654
No 35
>KOG2879|consensus
Probab=97.75 E-value=2.2e-05 Score=72.92 Aligned_cols=50 Identities=26% Similarity=0.576 Sum_probs=43.9
Q ss_pred CCcccccccccCcccceecCCCCCcccHhHHHHHHhc-CCCCCCCcccccc
Q psy17011 42 HSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS-GNKECPTCRKKLV 91 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~-~~~~CP~Cr~~~~ 91 (321)
....+|++|.+.-..|..+.+|||.||.-||...+.. ..+.||.|+....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3678999999999999999889999999999987763 3579999999876
No 36
>KOG4628|consensus
Probab=97.74 E-value=2.1e-05 Score=76.03 Aligned_cols=46 Identities=30% Similarity=0.724 Sum_probs=39.1
Q ss_pred ccccccccCcccc--e-ecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 45 LMCPICLDMLKKT--M-TTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 45 l~C~IC~~~l~~P--v-tl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.+|.||++-|.+- + .++ |.|.|...||..|+......||+|+..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 4999999998854 3 456 99999999999999975567999999776
No 37
>KOG0824|consensus
Probab=97.67 E-value=2e-05 Score=74.15 Aligned_cols=48 Identities=29% Similarity=0.681 Sum_probs=43.0
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
.-.|+||+....-|+.++ |+|.||.-||......+...|++||.++.+
T Consensus 7 ~~eC~IC~nt~n~Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcCcccc-ccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 346999999999999999 999999999998877677889999999974
No 38
>KOG0802|consensus
Probab=97.65 E-value=2e-05 Score=81.17 Aligned_cols=47 Identities=34% Similarity=0.751 Sum_probs=42.0
Q ss_pred CcccccccccCccc-----ceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKK-----TMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~-----Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.+..|+||.+.+.. |..++ |||.||..|+..|++. ...||.||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 47899999999998 78888 9999999999999996 779999999543
No 39
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.63 E-value=4.3e-05 Score=59.48 Aligned_cols=48 Identities=27% Similarity=0.668 Sum_probs=36.1
Q ss_pred cccccccccCcc-----------c-ceecCCCCCcccHhHHHHHHhc--CCCCCCCcccccc
Q psy17011 44 ELMCPICLDMLK-----------K-TMTTKECLHRFCSDCIITALRS--GNKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~-----------~-Pvtl~~CgHtFC~~CI~~~l~~--~~~~CP~Cr~~~~ 91 (321)
+-.|+||+..|. + |+....|+|.|...||.+|+.. ....||+||....
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 455666665554 2 4555569999999999999985 3579999999874
No 40
>KOG1813|consensus
Probab=97.61 E-value=2.6e-05 Score=73.22 Aligned_cols=46 Identities=26% Similarity=0.697 Sum_probs=41.4
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
-+-|-||..+|.+||.+. |||.||..|....++. ...|++|.+...
T Consensus 241 Pf~c~icr~~f~~pVvt~-c~h~fc~~ca~~~~qk-~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTK-CGHYFCEVCALKPYQK-GEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccccchhhc-CCceeehhhhcccccc-CCcceecccccc
Confidence 367999999999999999 9999999999988874 568999999886
No 41
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=4.8e-05 Score=71.68 Aligned_cols=48 Identities=29% Similarity=0.659 Sum_probs=39.7
Q ss_pred CcccccccccCcccc---eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKKT---MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~P---vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
....|.||+.-|.+- +.+| |.|.|...|+.+|+..-...||+||..++
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCC
Confidence 347899999987642 4556 99999999999999855678999999885
No 42
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00011 Score=70.94 Aligned_cols=48 Identities=27% Similarity=0.708 Sum_probs=40.3
Q ss_pred CCcccccccccCc-ccc------------eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 42 HSELMCPICLDML-KKT------------MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 42 ~~~l~C~IC~~~l-~~P------------vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+++-+|.||.+-+ ..| -.++ |||.|...|+..|++. ..+||.||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ER-qQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLER-QQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHh-ccCCCcccCccc
Confidence 4788999999964 333 6777 9999999999999985 779999999954
No 43
>KOG1002|consensus
Probab=97.07 E-value=0.00025 Score=71.27 Aligned_cols=50 Identities=30% Similarity=0.725 Sum_probs=43.4
Q ss_pred CCCcccccccccCcccceecCCCCCcccHhHHHHHHh----cCCCCCCCcccccc
Q psy17011 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALR----SGNKECPTCRKKLV 91 (321)
Q Consensus 41 l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~----~~~~~CP~Cr~~~~ 91 (321)
=..+..|.+|.+.-.+++... |.|.||+.||..++. ..+.+||+|-..+.
T Consensus 533 nk~~~~C~lc~d~aed~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCChhhhhHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 346889999999999999999 999999999988875 23579999988875
No 44
>KOG1645|consensus
Probab=96.93 E-value=0.0017 Score=63.54 Aligned_cols=59 Identities=34% Similarity=0.688 Sum_probs=45.3
Q ss_pred CcccccccccCcccc-----eecCCCCCcccHhHHHHHHhc-CCCCCCCccccccccccCCCChHHH
Q psy17011 43 SELMCPICLDMLKKT-----MTTKECLHRFCSDCIITALRS-GNKECPTCRKKLVSKRSLRADPNFD 103 (321)
Q Consensus 43 ~~l~C~IC~~~l~~P-----vtl~~CgHtFC~~CI~~~l~~-~~~~CP~Cr~~~~~~~~l~~n~~l~ 103 (321)
...+||||++-+.-| +.+. |||.|-.+||++|+.. ....||.|..... ++.+++-..++
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~-cghlFgs~cie~wl~k~~~~~cp~c~~kat-kr~i~~e~alR 67 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQ-CGHLFGSQCIEKWLGKKTKMQCPLCSGKAT-KRQIRPEYALR 67 (463)
T ss_pred ccccCceeeeeeeecCceEEeeec-ccccccHHHHHHHHhhhhhhhCcccCChhH-HHHHHHHHHHH
Confidence 457899999988877 4556 9999999999999963 2358999988776 55555555444
No 45
>KOG3800|consensus
Probab=96.85 E-value=0.00088 Score=62.94 Aligned_cols=51 Identities=31% Similarity=0.754 Sum_probs=40.9
Q ss_pred ccccccc-Ccccc---eecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCC
Q psy17011 46 MCPICLD-MLKKT---MTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLR 97 (321)
Q Consensus 46 ~C~IC~~-~l~~P---vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~ 97 (321)
.||+|.. .+.+| +.+.+|||+.|.+|+...+..|...||.|...+. +.+++
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR-k~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR-KNNFR 56 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh-hcccc
Confidence 5999987 35555 3445799999999999999888899999999886 55554
No 46
>KOG0804|consensus
Probab=96.65 E-value=0.00088 Score=66.25 Aligned_cols=51 Identities=29% Similarity=0.720 Sum_probs=41.8
Q ss_pred CccCCCCcccccccccCcccce----ecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 37 SPRSLHSELMCPICLDMLKKTM----TTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pv----tl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
++-.+.+.-+||||++-|-.-+ ++. |.|+|..+|+.+|+. ..||+||....
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeee-cccccchHHHhhccc---CcChhhhhhcC
Confidence 5556778889999999888664 455 999999999999974 58999998664
No 47
>KOG1039|consensus
Probab=96.53 E-value=0.00095 Score=64.86 Aligned_cols=50 Identities=32% Similarity=0.711 Sum_probs=40.0
Q ss_pred CCcccccccccCcccce-----e--cCCCCCcccHhHHHHHHhcC------CCCCCCcccccc
Q psy17011 42 HSELMCPICLDMLKKTM-----T--TKECLHRFCSDCIITALRSG------NKECPTCRKKLV 91 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pv-----t--l~~CgHtFC~~CI~~~l~~~------~~~CP~Cr~~~~ 91 (321)
..+..|.||++...+.. . ++.|.|.||..||..|-... .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 35889999999887765 2 24599999999999997422 479999999774
No 48
>KOG1785|consensus
Probab=96.28 E-value=0.0016 Score=63.64 Aligned_cols=49 Identities=27% Similarity=0.684 Sum_probs=38.5
Q ss_pred cccccccCcccceecCCCCCcccHhHHHHHHhc-CCCCCCCcccccccccc
Q psy17011 46 MCPICLDMLKKTMTTKECLHRFCSDCIITALRS-GNKECPTCRKKLVSKRS 95 (321)
Q Consensus 46 ~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~-~~~~CP~Cr~~~~~~~~ 95 (321)
.|.||.+--++- .+-+|||..|..|+..|... +...||.||..+...+.
T Consensus 371 LCKICaendKdv-kIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 371 LCKICAENDKDV-KIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHhhccCCCc-ccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 689999866654 44459999999999999864 36799999999865443
No 49
>KOG4172|consensus
Probab=96.28 E-value=0.0013 Score=46.90 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=40.0
Q ss_pred ccccccccCcccceecCCCCCc-ccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 45 LMCPICLDMLKKTMTTKECLHR-FCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 45 l~C~IC~~~l~~Pvtl~~CgHt-FC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
-.|.||.+--.+.|.-. |||- .|..|-.+.++.....||.||.++.
T Consensus 8 dECTICye~pvdsVlYt-CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYT-CGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHH-cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 56999999999998888 9997 6999998888866789999999874
No 50
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.10 E-value=0.0018 Score=48.76 Aligned_cols=48 Identities=27% Similarity=0.536 Sum_probs=23.5
Q ss_pred cccccccccCcc-c---ceec---CCCCCcccHhHHHHHHhc--CC--------CCCCCcccccc
Q psy17011 44 ELMCPICLDMLK-K---TMTT---KECLHRFCSDCIITALRS--GN--------KECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~-~---Pvtl---~~CgHtFC~~CI~~~l~~--~~--------~~CP~Cr~~~~ 91 (321)
++.|+||..++. + |... ..|+..|...|+.+||.. +. ..||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 578999999765 2 2211 149999999999999973 11 26999999875
No 51
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=96.09 E-value=0.013 Score=56.90 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=48.7
Q ss_pred chhhhHHHHHHHHhccCC---C------C--cCC-cceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeeecc
Q psy17011 253 GEVDHLTKYLTMRLRLEG---S------D--ICD-SNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWKK 320 (321)
Q Consensus 253 aTV~HL~KyLa~rl~l~~---~------~--~~~-~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~~~ 320 (321)
..|.-+.-|++-|+.... . . ..+ ..++| .|| +|+.+|||.-|.-.|||...-|+|+||.+.
T Consensus 258 LrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C-----~gq--vL~~~mtLaTVr~~~WK~~~di~L~YR~k~ 330 (331)
T PF11816_consen 258 LRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLC-----NGQ--VLPPDMTLATVRTFIWKSSGDIVLHYRRKG 330 (331)
T ss_pred hhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEe-----CCe--EcCCcCCHHHHHHhhccCCCeEEEEEEecC
Confidence 677888999999993111 0 1 111 56888 598 999999999999999999999999999874
No 52
>KOG4265|consensus
Probab=96.07 E-value=0.0035 Score=60.58 Aligned_cols=47 Identities=32% Similarity=0.708 Sum_probs=39.9
Q ss_pred CcccccccccCcccceecCCCCCc-ccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKKTMTTKECLHR-FCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~CgHt-FC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
..-.|-||+.-.++-+.+| |.|. .|..|.....- ....||+||.++.
T Consensus 289 ~gkeCVIClse~rdt~vLP-CRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLP-CRHLCLCSGCAKSLRY-QTNNCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCCcceEEec-chhhehhHhHHHHHHH-hhcCCCccccchH
Confidence 4679999999999999999 9998 69999865442 3567999999986
No 53
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.07 E-value=0.0048 Score=43.02 Aligned_cols=44 Identities=32% Similarity=0.773 Sum_probs=22.3
Q ss_pred ccccccCcccc---eecCCCCCcccHhHHHHHHhcCCCCCCCccccc
Q psy17011 47 CPICLDMLKKT---MTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90 (321)
Q Consensus 47 C~IC~~~l~~P---vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~ 90 (321)
||+|.+.+..- ..-=+||+.+|+.|..+.+......||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 67888776211 111159999999999999876678999999875
No 54
>KOG0825|consensus
Probab=95.97 E-value=0.002 Score=67.50 Aligned_cols=49 Identities=31% Similarity=0.657 Sum_probs=39.5
Q ss_pred CCcccccccccCcccceec--CCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 42 HSELMCPICLDMLKKTMTT--KECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pvtl--~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
...-.||+|+.-+.+-... ..|+|.||..||..|-+. ..+||+||..|.
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhh
Confidence 4566899999877765322 249999999999999985 679999999876
No 55
>KOG4367|consensus
Probab=95.94 E-value=0.0031 Score=62.30 Aligned_cols=35 Identities=29% Similarity=0.820 Sum_probs=31.9
Q ss_pred CCCcccccccccCcccceecCCCCCcccHhHHHHHH
Q psy17011 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITAL 76 (321)
Q Consensus 41 l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l 76 (321)
++++|.|+||...|++|+.++ |+|..|+.|....+
T Consensus 1 meeelkc~vc~~f~~epiil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILP-CSHNLCQACARNIL 35 (699)
T ss_pred CcccccCceehhhccCceEee-cccHHHHHHHHhhc
Confidence 468999999999999999999 99999999987654
No 56
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.92 E-value=0.0032 Score=67.24 Aligned_cols=51 Identities=24% Similarity=0.664 Sum_probs=39.8
Q ss_pred CCCcccccccccCccc-----c-eecCCCCCcccHhHHHHHHhc-CCCCCCCcccccc
Q psy17011 41 LHSELMCPICLDMLKK-----T-MTTKECLHRFCSDCIITALRS-GNKECPTCRKKLV 91 (321)
Q Consensus 41 l~~~l~C~IC~~~l~~-----P-vtl~~CgHtFC~~CI~~~l~~-~~~~CP~Cr~~~~ 91 (321)
+...-.|+||-.++.. | -+.+.|.|.|..+|+.+|++. ++..||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4566689999988761 2 233459999999999999985 5679999998764
No 57
>KOG1734|consensus
Probab=95.91 E-value=0.0029 Score=59.02 Aligned_cols=57 Identities=25% Similarity=0.568 Sum_probs=43.3
Q ss_pred ccCccCCCCcccccccccCcccc----------eecCCCCCcccHhHHHHHHhcC-CCCCCCcccccccc
Q psy17011 35 AVSPRSLHSELMCPICLDMLKKT----------MTTKECLHRFCSDCIITALRSG-NKECPTCRKKLVSK 93 (321)
Q Consensus 35 ~~~~~~l~~~l~C~IC~~~l~~P----------vtl~~CgHtFC~~CI~~~l~~~-~~~CP~Cr~~~~~~ 93 (321)
+.+.+.++ +-.|.||..-+... .++. |+|.|...||..|.-.| ...||-|++.+..+
T Consensus 216 glPtkhl~-d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 216 GLPTKHLS-DSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCCCCCC-cchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 44555554 66799998866544 4778 99999999999997654 35899999988643
No 58
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.68 E-value=0.011 Score=41.39 Aligned_cols=41 Identities=27% Similarity=0.714 Sum_probs=31.5
Q ss_pred ccccccc--CcccceecCCCC-----CcccHhHHHHHHhc-CCCCCCCcc
Q psy17011 46 MCPICLD--MLKKTMTTKECL-----HRFCSDCIITALRS-GNKECPTCR 87 (321)
Q Consensus 46 ~C~IC~~--~l~~Pvtl~~Cg-----HtFC~~CI~~~l~~-~~~~CP~Cr 87 (321)
.|.||++ .-.+|...| |. |.+...|+.+|+.. +...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 344566666 85 77999999999975 356899995
No 59
>KOG3039|consensus
Probab=95.66 E-value=0.0079 Score=55.47 Aligned_cols=50 Identities=22% Similarity=0.418 Sum_probs=42.2
Q ss_pred CCcccccccccCcccce---ecCCCCCcccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 42 HSELMCPICLDMLKKTM---TTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pv---tl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
...+.||+|.+.|.+.+ .+.+|||.||..|+++.++. ...||+|..++..
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcc
Confidence 36789999999999863 34469999999999999984 7789999999873
No 60
>KOG0828|consensus
Probab=95.53 E-value=0.0058 Score=61.25 Aligned_cols=50 Identities=28% Similarity=0.609 Sum_probs=37.2
Q ss_pred CCCcccccccccCcc-----c------------ceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 41 LHSELMCPICLDMLK-----K------------TMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 41 l~~~l~C~IC~~~l~-----~------------Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
++..--|+||..... . -+.+| |.|.|.+.|+.+|...-...||+||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 345567999986432 1 12334 99999999999999854558999999875
No 61
>KOG3039|consensus
Probab=95.48 E-value=0.15 Score=47.18 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=44.4
Q ss_pred cceeeeccCCcccccCcc--ccccC-ccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhc
Q psy17011 15 LSMYELNRTPQEAITDNT--EIAVS-PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS 78 (321)
Q Consensus 15 ~~~~e~~~~~~~~i~~~~--~~~~~-~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~ 78 (321)
.+.|--++..+++-..+. ..... -.++.+.-.|++|+..+++||.++ =||.||+.||..++..
T Consensus 11 ~avyTY~EkkkdaaasGYGTq~~RLgrDsiK~FdcCsLtLqPc~dPvit~-~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 11 GAVYTYHEKKKDAAASGYGTQRERLGRDSIKPFDCCSLTLQPCRDPVITP-DGYLFDREAILEYILA 76 (303)
T ss_pred ceeEeehhhcchhhhcCcchhhhhhcccccCCcceeeeecccccCCccCC-CCeeeeHHHHHHHHHH
Confidence 456666666665544333 22222 234445557899999999999999 9999999999998763
No 62
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=95.35 E-value=0.053 Score=42.56 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=52.4
Q ss_pred CCCCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 239 ETDDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 239 ~~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
.+.+|+ .|++ .||..+-+||..||++...+ .+.+|| + +.| ....+.|+.+++++| +.+.=|-+.|+-
T Consensus 16 ~k~kfl-v~~~---~tv~~~~~~lrk~L~l~~~~----slflyv--n-n~f-~p~~d~~~g~LY~~~-~~dGfLyi~Ys~ 82 (87)
T cd01612 16 KQKVFK-ISAT---QSFQAVIDFLRKRLKLKASD----SLFLYI--N-NSF-APSPDENVGNLYRCF-GTNGELIVSYCK 82 (87)
T ss_pred cccEEE-eCCC---CCHHHHHHHHHHHhCCCccC----eEEEEE--C-Ccc-CCCchhHHHHHHHhc-CCCCEEEEEEeC
Confidence 444666 8999 99999999999999997432 244565 2 333 444579999999999 999999999985
Q ss_pred c
Q psy17011 319 K 319 (321)
Q Consensus 319 ~ 319 (321)
.
T Consensus 83 ~ 83 (87)
T cd01612 83 T 83 (87)
T ss_pred c
Confidence 4
No 63
>KOG4692|consensus
Probab=95.25 E-value=0.01 Score=57.25 Aligned_cols=47 Identities=30% Similarity=0.715 Sum_probs=41.8
Q ss_pred CcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
++-.||||-.--..+|..| |+|.-|+.||.+++-+ .+.|-.|+..+.
T Consensus 421 Ed~lCpICyA~pi~Avf~P-C~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAP-CSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccC-CCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 5678999999888999988 9999999999999984 788999988764
No 64
>KOG0827|consensus
Probab=95.12 E-value=0.014 Score=57.09 Aligned_cols=47 Identities=28% Similarity=0.628 Sum_probs=34.2
Q ss_pred ccccccccCccccee---cCCCCCcccHhHHHHHHhcCC--CCCCCcccccc
Q psy17011 45 LMCPICLDMLKKTMT---TKECLHRFCSDCIITALRSGN--KECPTCRKKLV 91 (321)
Q Consensus 45 l~C~IC~~~l~~Pvt---l~~CgHtFC~~CI~~~l~~~~--~~CP~Cr~~~~ 91 (321)
..|.||.+.+-.-.- +..|||+|...|+..|+.... ..||.|+..+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 469999665543221 223999999999999998533 48999996554
No 65
>KOG1493|consensus
Probab=95.02 E-value=0.0044 Score=47.14 Aligned_cols=46 Identities=30% Similarity=0.715 Sum_probs=34.4
Q ss_pred cccccccCccc------------ceecCCCCCcccHhHHHHHHhc--CCCCCCCcccccc
Q psy17011 46 MCPICLDMLKK------------TMTTKECLHRFCSDCIITALRS--GNKECPTCRKKLV 91 (321)
Q Consensus 46 ~C~IC~~~l~~------------Pvtl~~CgHtFC~~CI~~~l~~--~~~~CP~Cr~~~~ 91 (321)
+|.||+-.|.- |+...-|.|.|..-||.+|+.. ....||+||+...
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 77777766642 3444459999999999999974 2358999998764
No 66
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=94.99 E-value=0.098 Score=41.10 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=47.2
Q ss_pred CCCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeeec
Q psy17011 240 TDDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWK 319 (321)
Q Consensus 240 ~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~~ 319 (321)
+.+-.+.++. -|+.++-+||..+|.++..+ .+.+||-.. |.+- .+.++.+++..|= .+.-|.++|+.+
T Consensus 16 k~~k~kI~~~---~~f~~vi~fLrk~Lk~~~~~----slFlYin~s---FaPs-pDe~vg~L~~~f~-~~~~Liv~Ys~t 83 (87)
T PF04110_consen 16 KQKKFKISAS---QTFATVIAFLRKKLKLKPSD----SLFLYINNS---FAPS-PDETVGDLYRCFG-TNGELIVSYSKT 83 (87)
T ss_dssp S--EEEEETT---SBTHHHHHHHHHHCT----S----S-EEEEEEE---E----TTSBHHHHHHHH--BTTBEEEEEESS
T ss_pred cCcEEEECCC---CchHHHHHHHHHHhCCccCC----eEEEEEcCc---cCCC-chhHHHHHHHHhC-CCCEEEEEEecc
Confidence 3478899999 99999999999999996433 256688543 5333 3779999998885 788899999864
No 67
>KOG4185|consensus
Probab=94.86 E-value=0.024 Score=53.72 Aligned_cols=65 Identities=25% Similarity=0.459 Sum_probs=49.1
Q ss_pred cccccccccCcc------cceecCCCCCcccHhHHHHHHhcCCCCCCCccccc--cc--cccCCCChHHHHHHHHH
Q psy17011 44 ELMCPICLDMLK------KTMTTKECLHRFCSDCIITALRSGNKECPTCRKKL--VS--KRSLRADPNFDLLISKI 109 (321)
Q Consensus 44 ~l~C~IC~~~l~------~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~--~~--~~~l~~n~~l~~lv~kl 109 (321)
.+.|-||.+.|. -|..+. |||+||..|+...+..+...||.||.+. .. ...+..|..+..++...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 467888888665 466777 9999999999998887777899999984 32 23666777776666553
No 68
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.81 E-value=0.007 Score=55.62 Aligned_cols=49 Identities=31% Similarity=0.804 Sum_probs=39.1
Q ss_pred CcccccccccC-cccc-e---ecCCCCCcccHhHHHHHHhcCCCCCC--Ccccccc
Q psy17011 43 SELMCPICLDM-LKKT-M---TTKECLHRFCSDCIITALRSGNKECP--TCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~-l~~P-v---tl~~CgHtFC~~CI~~~l~~~~~~CP--~Cr~~~~ 91 (321)
.+-+||||... +-+| + .-|+|-|..|.+|+.+.+..|...|| -|.+.+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 45689999873 4445 2 23569999999999999998999999 7988775
No 69
>KOG4739|consensus
Probab=94.78 E-value=0.063 Score=49.47 Aligned_cols=44 Identities=25% Similarity=0.748 Sum_probs=30.8
Q ss_pred ccccccccCc-ccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 45 LMCPICLDML-KKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 45 l~C~IC~~~l-~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+.|-.|..-- .+|..+.-|+|.||..|..... ...||.|++.+.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIR 48 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceee
Confidence 4566665522 4566565699999999986432 238999999864
No 70
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.76 E-value=0.023 Score=53.27 Aligned_cols=54 Identities=17% Similarity=0.429 Sum_probs=42.0
Q ss_pred CCCcccccccccCccc---ceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccC
Q psy17011 41 LHSELMCPICLDMLKK---TMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSL 96 (321)
Q Consensus 41 l~~~l~C~IC~~~l~~---Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l 96 (321)
-...+.|||....|.. -|.+.+|||.|+..+|...- ....||+|..++...+.+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 4578999999998853 36666799999999998763 255799999999844433
No 71
>KOG1571|consensus
Probab=94.72 E-value=0.018 Score=55.85 Aligned_cols=49 Identities=31% Similarity=0.727 Sum_probs=38.7
Q ss_pred ccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.+.......|.||.+-..+.+.++ |||..| |..-+.. ...||+||..+.
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvp-cGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVP-CGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred ccccCCCCceEEecCCccceeeec-CCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 344445678999999999999999 999977 7765543 566999999775
No 72
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.42 E-value=0.017 Score=41.28 Aligned_cols=47 Identities=23% Similarity=0.492 Sum_probs=38.0
Q ss_pred CCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 41 l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+..+..|-.|...-...+.++ |||..|..|..-. .-..||.|..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~p-CgH~I~~~~f~~~---rYngCPfC~~~~~ 50 (55)
T PF14447_consen 4 QQPEQPCVFCGFVGTKGTVLP-CGHLICDNCFPGE---RYNGCPFCGTPFE 50 (55)
T ss_pred cccceeEEEcccccccccccc-ccceeeccccChh---hccCCCCCCCccc
Confidence 346778888888888888889 9999999998643 2457999999885
No 73
>KOG3002|consensus
Probab=94.34 E-value=0.034 Score=53.23 Aligned_cols=64 Identities=22% Similarity=0.418 Sum_probs=48.7
Q ss_pred cCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 39 RSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 39 ~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
....+.|.||||.+.+..|+.--.=||.-|.+|-.+ -...||.|+.++... ....+..+++..+
T Consensus 43 ~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~~----R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGNI----RCRAMEKVAEAVL 106 (299)
T ss_pred ccchhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCccccccccH----HHHHHHHHHHhce
Confidence 345578999999999999986544699999999753 246899999999722 3566777776654
No 74
>KOG1001|consensus
Probab=94.26 E-value=0.018 Score=60.94 Aligned_cols=45 Identities=38% Similarity=0.921 Sum_probs=38.4
Q ss_pred ccccccccCcccceecCCCCCcccHhHHHHHHhcC-CCCCCCcccccc
Q psy17011 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITALRSG-NKECPTCRKKLV 91 (321)
Q Consensus 45 l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~-~~~CP~Cr~~~~ 91 (321)
..|++|.+ ...++-+. |||.||..|+...+... ...||.|+..+.
T Consensus 455 ~~c~ic~~-~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 89999999 77778778 99999999999988742 347999998775
No 75
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.06 E-value=0.042 Score=42.24 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=27.8
Q ss_pred eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 58 MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 58 vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+.-..|.|.|..-||.+||.. ...||.|++...
T Consensus 49 v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred EEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 334459999999999999996 668999999875
No 76
>KOG2817|consensus
Probab=93.66 E-value=0.048 Score=53.53 Aligned_cols=51 Identities=24% Similarity=0.537 Sum_probs=42.6
Q ss_pred CCCCcccccccccCcc---cceecCCCCCcccHhHHHHHHhcCC--CCCCCcccccc
Q psy17011 40 SLHSELMCPICLDMLK---KTMTTKECLHRFCSDCIITALRSGN--KECPTCRKKLV 91 (321)
Q Consensus 40 ~l~~~l~C~IC~~~l~---~Pvtl~~CgHtFC~~CI~~~l~~~~--~~CP~Cr~~~~ 91 (321)
.++.-|.|||=.+.-. .|+++. |||..|+.-+.+..+.|. +.||.|-....
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPVEQL 385 (394)
T ss_pred cccceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence 4789999999776544 589999 999999999999988777 89999976543
No 77
>KOG4362|consensus
Probab=93.66 E-value=0.02 Score=59.92 Aligned_cols=70 Identities=36% Similarity=0.698 Sum_probs=52.9
Q ss_pred ccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhc--CCCCCCCccccccccccCCCChHHHHHHHHH
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS--GNKECPTCRKKLVSKRSLRADPNFDLLISKI 109 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~--~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl 109 (321)
...+...+.|+||...+.+|+.+. |.|.||..|+...+.. +...||+|+..+. ++..+-......++...
T Consensus 15 i~~~~k~lEc~ic~~~~~~p~~~k-c~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e-K~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 15 INAMQKILECPICLEHVKEPSLLK-CDHIFLKFCLNKLFESKKGPKQCALCKSDIE-KRSLRESPRFSQLSKES 86 (684)
T ss_pred HHHHhhhccCCceeEEeeccchhh-hhHHHHhhhhhceeeccCccccchhhhhhhh-hhhccccchHHHHHHHh
Confidence 344567899999999999999999 9999999999887653 3578999997775 44444344455555543
No 78
>KOG0826|consensus
Probab=93.62 E-value=0.041 Score=52.77 Aligned_cols=48 Identities=21% Similarity=0.477 Sum_probs=41.0
Q ss_pred CcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+.-.||+|+.--.+|..+..-|-.||..||..++.+ ...||+-..+..
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS 346 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence 456899999999999887756999999999999984 678999777664
No 79
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.54 E-value=0.092 Score=36.84 Aligned_cols=45 Identities=31% Similarity=0.718 Sum_probs=24.3
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHH----hcCCCCCCCcccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITAL----RSGNKECPTCRKK 89 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l----~~~~~~CP~Cr~~ 89 (321)
.|.|||....+.-|+....|.|.-|-+ +..|+ ..+...||.|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 478999999999999998899997743 22333 2345789999863
No 80
>KOG4275|consensus
Probab=92.94 E-value=0.023 Score=53.64 Aligned_cols=43 Identities=33% Similarity=0.841 Sum_probs=35.8
Q ss_pred CcccccccccCcccceecCCCCCcc-cHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKKTMTTKECLHRF-CSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~CgHtF-C~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
..-.|.||.+..++-+.+. |||.. |..|-.+ ...||+||+.+.
T Consensus 299 ~~~LC~ICmDaP~DCvfLe-CGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLE-CGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHHhcCCcceEEee-cCcEEeehhhccc-----cccCchHHHHHH
Confidence 3778999999999999999 99975 7777543 448999999774
No 81
>KOG3161|consensus
Probab=92.42 E-value=0.035 Score=57.44 Aligned_cols=41 Identities=29% Similarity=0.801 Sum_probs=33.4
Q ss_pred CCCCcccccccccCcc----cceecCCCCCcccHhHHHHHHhcCCCCCC
Q psy17011 40 SLHSELMCPICLDMLK----KTMTTKECLHRFCSDCIITALRSGNKECP 84 (321)
Q Consensus 40 ~l~~~l~C~IC~~~l~----~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP 84 (321)
.+.+.+.|+||+..|. .||.+. |||+.|+.|+.... +..||
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~-cghtic~~c~~~ly---n~scp 51 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQ-CGHTICGHCVQLLY---NASCP 51 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCccccc-ccchHHHHHHHhHh---hccCC
Confidence 4557789999988775 689999 99999999998654 34688
No 82
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.33 E-value=0.23 Score=41.85 Aligned_cols=50 Identities=22% Similarity=0.477 Sum_probs=42.3
Q ss_pred CcccccccccCcccceecC---CCCCcccHhHHHHHHhcC--CCCCCCccccccc
Q psy17011 43 SELMCPICLDMLKKTMTTK---ECLHRFCSDCIITALRSG--NKECPTCRKKLVS 92 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~---~CgHtFC~~CI~~~l~~~--~~~CP~Cr~~~~~ 92 (321)
....|-||.+...+...++ .||-..|..|-...|+.. ...||+|+.++.+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 5679999999999988876 499999999999988742 3589999998863
No 83
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=90.25 E-value=1.1 Score=36.92 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=52.1
Q ss_pred CCCCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 239 ETDDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 239 ~~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
.+.+|+ .+.. .||.++..+|..||.|+..+- +.+|| + +. +.+.+.||.+|.++|=-.+.=|-|.|+-
T Consensus 41 ~k~Kfl-Vp~~---~tv~~f~~~irk~l~l~~~~s----lfl~V--n--~~-~p~~~~~~~~lY~~~kd~DGfLyl~Ys~ 107 (112)
T cd01611 41 DKKKYL-VPSD---LTVGQFVYIIRKRIQLRPEKA----LFLFV--N--NS-LPPTSATMSQLYEEHKDEDGFLYMTYSS 107 (112)
T ss_pred cCceEE-ecCC---CCHHHHHHHHHHHhCCCccce----EEEEE--C--Cc-cCCchhHHHHHHHHhCCCCCEEEEEEec
Confidence 335887 8999 999999999999999875332 23344 3 33 6777999999999996568889999985
Q ss_pred c
Q psy17011 319 K 319 (321)
Q Consensus 319 ~ 319 (321)
.
T Consensus 108 ~ 108 (112)
T cd01611 108 E 108 (112)
T ss_pred c
Confidence 3
No 84
>KOG2930|consensus
Probab=89.77 E-value=0.19 Score=40.55 Aligned_cols=28 Identities=32% Similarity=0.610 Sum_probs=24.7
Q ss_pred CCCCcccHhHHHHHHhcCCCCCCCccccc
Q psy17011 62 ECLHRFCSDCIITALRSGNKECPTCRKKL 90 (321)
Q Consensus 62 ~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~ 90 (321)
.|.|.|..-||.+|++. ...||.|.+.-
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcce
Confidence 69999999999999996 66899998754
No 85
>KOG0298|consensus
Probab=89.66 E-value=0.098 Score=58.02 Aligned_cols=64 Identities=25% Similarity=0.479 Sum_probs=50.1
Q ss_pred ccccCccccccCccCCCCcccccccccCcccc-eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 26 EAITDNTEIAVSPRSLHSELMCPICLDMLKKT-MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 26 ~~i~~~~~~~~~~~~l~~~l~C~IC~~~l~~P-vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.-|.+.......+..+...+.|+||+++++.- .... |||-+|..|+..|+.. ...||.|.....
T Consensus 1135 ~~i~~~es~~~y~~~~~~~~~c~ic~dil~~~~~I~~-cgh~~c~~c~~~~l~~-~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1135 CKIAQTESDVRYLMNLSGHFVCEICLDILRNQGGIAG-CGHEPCCRCDELWLYA-SSRCPICKSIKG 1199 (1394)
T ss_pred cccCCccchHHHHHHhhcccchHHHHHHHHhcCCeee-echhHhhhHHHHHHHH-hccCcchhhhhh
Confidence 44555555566677777888999999999954 4455 9999999999999985 678999986554
No 86
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.18 E-value=0.27 Score=47.65 Aligned_cols=46 Identities=28% Similarity=0.705 Sum_probs=37.5
Q ss_pred CCcccccccccCcccceecCCCCCcccHhHHHHH--HhcCCCCCCCcccc
Q psy17011 42 HSELMCPICLDMLKKTMTTKECLHRFCSDCIITA--LRSGNKECPTCRKK 89 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~--l~~~~~~CP~Cr~~ 89 (321)
++...|.||.+-+.--..+| |+|..|..|-.+. |- ..+.||.||..
T Consensus 59 Een~~C~ICA~~~TYs~~~P-C~H~~CH~Ca~RlRALY-~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSARYP-CGHQICHACAVRLRALY-MQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEecc-CCchHHHHHHHHHHHHH-hccCCCccccc
Confidence 36789999999887777778 9999999998763 33 36789999975
No 87
>KOG1814|consensus
Probab=88.80 E-value=0.39 Score=47.53 Aligned_cols=47 Identities=26% Similarity=0.552 Sum_probs=34.1
Q ss_pred CCcccccccccCcccc---eecCCCCCcccHhHHHHHHhc----C---CCCCCCcccc
Q psy17011 42 HSELMCPICLDMLKKT---MTTKECLHRFCSDCIITALRS----G---NKECPTCRKK 89 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~P---vtl~~CgHtFC~~CI~~~l~~----~---~~~CP~Cr~~ 89 (321)
+..+.|.||.+...-. +.++ |+|.||++|+..|+.. + ...||.+.-.
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hhcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 4568999999976542 3445 9999999999999752 2 2468776543
No 88
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=88.75 E-value=1.1 Score=33.82 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=44.3
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEe
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYY 316 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y 316 (321)
-.+.++.. +||..||+-|+.+.+++.+.+- +|| +|. +|.++.||.+.. =+...-+.|||
T Consensus 14 ~~~~v~~~---~TV~~LK~~I~~~~~~~~~~qr----Li~----~Gk--~L~D~~tL~~yg---i~~~stv~l~~ 72 (73)
T cd01791 14 VRVKCNPD---DTIGDLKKLIAAQTGTRPEKIV----LKK----WYT--IFKDHISLGDYE---IHDGMNLELYY 72 (73)
T ss_pred EEEEeCCC---CcHHHHHHHHHHHhCCChHHEE----EEe----CCc--CCCCCCCHHHcC---CCCCCEEEEEe
Confidence 34578888 9999999999999888754433 554 366 899999998843 34566677777
No 89
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.38 E-value=0.45 Score=32.31 Aligned_cols=40 Identities=25% Similarity=0.776 Sum_probs=24.5
Q ss_pred ccccccCcccceecC--CCCCcccHhHHHHHHhcCCC-CCCCc
Q psy17011 47 CPICLDMLKKTMTTK--ECLHRFCSDCIITALRSGNK-ECPTC 86 (321)
Q Consensus 47 C~IC~~~l~~Pvtl~--~CgHtFC~~CI~~~l~~~~~-~CP~C 86 (321)
|.+|.++...-+.-+ .|+-.+...|+..+++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888888777665 59999999999999985333 69987
No 90
>KOG2114|consensus
Probab=87.64 E-value=0.27 Score=52.61 Aligned_cols=43 Identities=23% Similarity=0.586 Sum_probs=36.3
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~ 90 (321)
.-.|..|...+.-|+.---|||.|.+.|+. .+...||.|+...
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccchhh
Confidence 468999999999997766699999999997 3567899997743
No 91
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=87.35 E-value=0.72 Score=40.13 Aligned_cols=50 Identities=22% Similarity=0.444 Sum_probs=36.3
Q ss_pred CCCcccccccccCcccceecCCCCCc-----ccHhHHHHHHhc-CCCCCCCccccccc
Q psy17011 41 LHSELMCPICLDMLKKTMTTKECLHR-----FCSDCIITALRS-GNKECPTCRKKLVS 92 (321)
Q Consensus 41 l~~~l~C~IC~~~l~~Pvtl~~CgHt-----FC~~CI~~~l~~-~~~~CP~Cr~~~~~ 92 (321)
...+-.|-||.+--. +...| |... ..++|+.+|+.. +...|+.|+.++.-
T Consensus 5 s~~~~~CRIC~~~~~-~~~~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 5 SLMDKCCWICKDEYD-VVTNY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCCeeEecCCCCC-CccCC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 345678999988753 33333 5543 389999999984 46799999998864
No 92
>PHA03096 p28-like protein; Provisional
Probab=87.28 E-value=0.32 Score=46.30 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=30.6
Q ss_pred ccccccccCcc-cc------eecCCCCCcccHhHHHHHHhcC--CCCCCCccc
Q psy17011 45 LMCPICLDMLK-KT------MTTKECLHRFCSDCIITALRSG--NKECPTCRK 88 (321)
Q Consensus 45 l~C~IC~~~l~-~P------vtl~~CgHtFC~~CI~~~l~~~--~~~CP~Cr~ 88 (321)
-.|.||++... .+ -.++.|.|.||..||..|.... ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 67999999544 22 2344799999999999987632 235555554
No 93
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=87.18 E-value=3.1 Score=33.74 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=49.3
Q ss_pred CCCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 240 TDDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 240 ~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
+.+|| .|.. .||.++-..|..|+.|+..+ .+|+-.+ + ++++.+.||.+|.++|=-...=|=|.|+-
T Consensus 34 k~KfL-vp~~---~tv~qf~~~ir~rl~l~~~~------alfl~Vn-~--~lp~~s~tm~elY~~~kdeDGFLY~~Ys~ 99 (104)
T PF02991_consen 34 KKKFL-VPKD---LTVGQFVYIIRKRLQLSPEQ------ALFLFVN-N--TLPSTSSTMGELYEKYKDEDGFLYMTYSS 99 (104)
T ss_dssp SSEEE-EETT---SBHHHHHHHHHHHTT--TTS-------EEEEBT-T--BESSTTSBHHHHHHHHB-TTSSEEEEEES
T ss_pred ccEEE-EcCC---CchhhHHHHhhhhhcCCCCc------eEEEEEc-C--cccchhhHHHHHHHHhCCCCCeEEEEecc
Confidence 35888 6888 99999999999999997532 2333343 4 48899999999999997678888888874
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=87.18 E-value=0.37 Score=46.65 Aligned_cols=47 Identities=30% Similarity=0.711 Sum_probs=34.3
Q ss_pred cccccccccCcccc----eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 44 ELMCPICLDMLKKT----MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~~P----vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+-.||+|.+-+--. .-.+ ||-..|+-|+...-..-+..||-||..+.
T Consensus 14 ed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 34499999865421 1123 99999999997665555679999999886
No 95
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=87.04 E-value=0.65 Score=33.80 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=37.6
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
-.|..+.. .||..|++.|+.+.+++..++- ++| .|. +|.++.||.+.
T Consensus 8 ~~~~v~~~---~tV~~lK~~i~~~~~~~~~~~~----L~~----~G~--~L~d~~tL~~~ 54 (69)
T PF00240_consen 8 FTLEVDPD---DTVADLKQKIAEETGIPPEQQR----LIY----NGK--ELDDDKTLSDY 54 (69)
T ss_dssp EEEEEETT---SBHHHHHHHHHHHHTSTGGGEE----EEE----TTE--EESTTSBTGGG
T ss_pred EEEEECCC---CCHHHhhhhcccccccccccce----eee----eee--cccCcCcHHHc
Confidence 45677788 9999999999999999864443 444 587 88999999875
No 96
>KOG1941|consensus
Probab=86.33 E-value=0.27 Score=48.33 Aligned_cols=48 Identities=33% Similarity=0.789 Sum_probs=36.5
Q ss_pred CcccccccccCcc-cc--e-ecCCCCCcccHhHHHHHHhc-CCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLK-KT--M-TTKECLHRFCSDCIITALRS-GNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~-~P--v-tl~~CgHtFC~~CI~~~l~~-~~~~CP~Cr~~~~ 91 (321)
-+|.|..|.+.+- .| . -++ |.|.|...|+..++.+ +...||.||+...
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 3588999998654 22 2 345 9999999999999874 4579999996443
No 97
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=84.83 E-value=1.5 Score=30.87 Aligned_cols=48 Identities=10% Similarity=0.094 Sum_probs=36.9
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
.-+..++. .||..|+..|+.+++++...+- +.+ +|. .|.++.||.+..
T Consensus 12 ~~~~v~~~---~tv~~lk~~i~~~~~~~~~~~~---L~~-----~g~--~L~d~~tL~~~~ 59 (64)
T smart00213 12 ITLEVKPS---DTVSELKEKIAELTGIPVEQQR---LIY-----KGK--VLEDDRTLADYN 59 (64)
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCCCHHHEE---EEE-----CCE--ECCCCCCHHHcC
Confidence 45778888 9999999999999999754333 333 366 799999998754
No 98
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=82.96 E-value=4 Score=34.05 Aligned_cols=65 Identities=11% Similarity=-0.030 Sum_probs=50.6
Q ss_pred CCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 241 DDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 241 ~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
.+|+..|.+ +||..+-..|..|+.|+..+ - |+ | .+ +. +++-+.||.+|.+.|=-...=|=+.|+-
T Consensus 42 ~KfllVP~d---~tV~qF~~iIRkrl~l~~~k-~---fl-f--Vn-n~--lp~~s~~mg~lYe~~KDeDGFLYi~Ys~ 106 (121)
T PTZ00380 42 VHFLALPRD---ATVAELEAAVRQALGTSAKK-V---TL-A--IE-GS--TPAVTATVGDIADACKRDDGFLYVSVRT 106 (121)
T ss_pred eEEEEcCCC---CcHHHHHHHHHHHcCCChhH-E---EE-E--EC-Cc--cCCccchHHHHHHHhcCCCCeEEEEEcc
Confidence 489899999 99999999999999998533 2 22 2 23 43 7778899999999986677777777763
No 99
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=82.03 E-value=2.2 Score=31.29 Aligned_cols=47 Identities=9% Similarity=0.182 Sum_probs=37.2
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
-.|....+ .||..||+.|+.+.+++..++ .+|| +|. +|.++.||.+.
T Consensus 11 ~~~~v~~~---~tV~~lK~~i~~~~gi~~~~q----~Li~----~G~--~L~d~~~l~~~ 57 (70)
T cd01798 11 FPVEVDPD---TDIKQLKEVVAKRQGVPPDQL----RVIF----AGK--ELRNTTTIQEC 57 (70)
T ss_pred EEEEECCC---ChHHHHHHHHHHHHCCCHHHe----EEEE----CCe--ECCCCCcHHHc
Confidence 45677788 999999999999999985433 3454 577 89999999874
No 100
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.58 E-value=1.1 Score=34.00 Aligned_cols=34 Identities=35% Similarity=0.764 Sum_probs=25.6
Q ss_pred CCCcccHhHHHHHHhcCCCCCCCccccccccccCCCCh
Q psy17011 63 CLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADP 100 (321)
Q Consensus 63 CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~ 100 (321)
=-|+||..|...-|. ..||.|+..+. .+.++|..
T Consensus 27 fEcTFCadCae~~l~---g~CPnCGGelv-~RP~RPaa 60 (84)
T COG3813 27 FECTFCADCAENRLH---GLCPNCGGELV-ARPIRPAA 60 (84)
T ss_pred EeeehhHhHHHHhhc---CcCCCCCchhh-cCcCChHH
Confidence 457899999987664 47999999987 55555543
No 101
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=81.19 E-value=0.57 Score=37.03 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=25.9
Q ss_pred CCCcccccccccCcccc-eecCCCCCcccHhHHH
Q psy17011 41 LHSELMCPICLDMLKKT-MTTKECLHRFCSDCII 73 (321)
Q Consensus 41 l~~~l~C~IC~~~l~~P-vtl~~CgHtFC~~CI~ 73 (321)
+.++-.|++|...+... ...-+|||.|+..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45677899999988754 4444599999999974
No 102
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=81.18 E-value=2.8 Score=45.43 Aligned_cols=58 Identities=16% Similarity=0.397 Sum_probs=47.3
Q ss_pred chhhhHHHHHHHHhccCCCCcCC----cceEEEeecCCCceeeCCCCchHHHHHHhhcC---CCCCeEEEeeec
Q psy17011 253 GEVDHLTKYLTMRLRLEGSDICD----SNFGIYVSPSSNNFILLPGNQSLRQIHDKYWK---SEKPLEVYYSWK 319 (321)
Q Consensus 253 aTV~HL~KyLa~rl~l~~~~~~~----~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk---~~~Pl~l~Y~~~ 319 (321)
=++..+|.+|+.-+.+.. +-| -..++ .|+ |++-+..+++|..+.|+ .+.||++.||..
T Consensus 15 PlmrdvknkIc~d~~m~~--lleDd~gmELlV-----~~~--IisldL~v~~Vy~~vW~~~~~~~pM~v~YR~~ 79 (802)
T PF13764_consen 15 PLMRDVKNKICRDLEMIA--LLEDDNGMELLV-----NNK--IISLDLPVRDVYEKVWKPNNQNPPMRVVYRMR 79 (802)
T ss_pred chHHHHHHHHhhhcccch--hccCCcccceee-----cCe--eecCCCcHHHHHHHHhcccCCCCCeEEEEeec
Confidence 477899999999988752 111 33666 588 88899999999999999 799999999975
No 103
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=81.16 E-value=2.7 Score=31.17 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=36.5
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhcc--CCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRL--EGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l--~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.+.+... .||..||..|+.+.++ +..++ .++| +|. +|.++.||.+..
T Consensus 13 ~~l~v~~~---~TV~~lK~~i~~~~~i~~~~~~q----~L~~----~G~--~L~d~~~L~~~~ 62 (77)
T cd01805 13 FPIEVDPD---DTVAELKEKIEEEKGCDYPPEQQ----KLIY----SGK--ILKDDTTLEEYK 62 (77)
T ss_pred EEEEECCC---CcHHHHHHHHHHhhCCCCChhHe----EEEE----CCE--EccCCCCHHHcC
Confidence 34777888 9999999999999988 53332 3443 477 899999998743
No 104
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=81.15 E-value=1.6 Score=33.53 Aligned_cols=48 Identities=27% Similarity=0.695 Sum_probs=22.3
Q ss_pred cccccccccCccc-----c-eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 44 ELMCPICLDMLKK-----T-MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~~-----P-vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.-.|.||.+-.-- + |-..+|+-..|+.|..=-.+.++..||.|+..+.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 4579999885431 1 2234699999999998777778899999998775
No 105
>PHA02862 5L protein; Provisional
Probab=80.83 E-value=1.3 Score=38.07 Aligned_cols=46 Identities=24% Similarity=0.436 Sum_probs=33.9
Q ss_pred ccccccccCcccceecCCCCCc-----ccHhHHHHHHhc-CCCCCCCccccccc
Q psy17011 45 LMCPICLDMLKKTMTTKECLHR-----FCSDCIITALRS-GNKECPTCRKKLVS 92 (321)
Q Consensus 45 l~C~IC~~~l~~Pvtl~~CgHt-----FC~~CI~~~l~~-~~~~CP~Cr~~~~~ 92 (321)
-.|-||.+--.+.+ .| |..+ ..+.|+.+|+.. +...|+.|+.++.-
T Consensus 3 diCWIC~~~~~e~~-~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDERN-NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCCc-cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 36899998765443 33 6543 479999999974 45799999999863
No 106
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=80.35 E-value=2.9 Score=29.75 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=35.6
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQ 300 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~ 300 (321)
-.+.++.+ +||..|++.|+.+.+++...+- +.+ .|. +|.++.||.+
T Consensus 10 ~~~~~~~~---~ti~~lK~~i~~~~~~~~~~~~---l~~-----~g~--~l~d~~~l~~ 55 (69)
T cd01769 10 FELEVSPD---DTVAELKAKIAAKEGVPPEQQR---LIY-----AGK--ILKDDKTLSD 55 (69)
T ss_pred EEEEECCC---ChHHHHHHHHHHHHCcChHHEE---EEE-----CCc--CCCCcCCHHH
Confidence 34677888 9999999999999998865444 433 466 7899999875
No 107
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=79.34 E-value=4.9 Score=30.94 Aligned_cols=60 Identities=18% Similarity=0.419 Sum_probs=47.4
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCC-ceeeCCCCchHHHHHHhhcC--CCCCeEE
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSN-NFILLPGNQSLRQIHDKYWK--SEKPLEV 314 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~-~~~~L~~~~TL~~V~~~~Wk--~~~Pl~l 314 (321)
|+.+-. +....|.--|+.||.+....+ -+-|=++.++ +.|+|++.-.|++| |+ .+.|+-|
T Consensus 11 i~v~~g---~~y~~L~~~ls~kL~l~~~~~----~LSY~~~~~~~~~v~l~~e~~me~a----W~~v~~~~ltL 73 (78)
T cd06411 11 LRAPRG---ADVSSLRALLSQALPQQAQRG----QLSYRAPGEDGHWVPISGEESLQRA----WQDVADGPRGL 73 (78)
T ss_pred EEccCC---CCHHHHHHHHHHHhcCChhhc----EEEecCCCCCccEeecCcchHHHHH----HHhccCCceEE
Confidence 677778 999999999999999986433 3448888777 88999999999988 54 4666655
No 108
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=78.99 E-value=2.1 Score=47.44 Aligned_cols=54 Identities=24% Similarity=0.596 Sum_probs=40.5
Q ss_pred CccCCCCcccccccccCcc-----cc-eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 37 SPRSLHSELMCPICLDMLK-----KT-MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~-----~P-vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+++.+.. -.|.||.+-.- +| |-..+|+--.|+.|.+=-.++|+..||.|+..+.
T Consensus 11 ~~~~~~~-qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 11 PMKHGGG-QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CccccCC-ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4555553 38999999633 12 4556799999999996555678899999999885
No 109
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=78.85 E-value=3 Score=31.58 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=34.8
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
.-|..+.. +||..||+-|+.+.+++..++- ++| .|. +|.++ ||.+..
T Consensus 14 ~~l~v~~~---~TV~~LK~~I~~~~~~~~~~qr----L~~----~Gk--~L~d~-~L~~~g 60 (78)
T cd01804 14 FDLSVPPD---ETVEGLKKRISQRLKVPKERLA----LLH----RET--RLSSG-KLQDLG 60 (78)
T ss_pred EEEEECCc---CHHHHHHHHHHHHhCCChHHEE----EEE----CCc--CCCCC-cHHHcC
Confidence 44677788 9999999999999988753333 443 466 88888 887643
No 110
>KOG3970|consensus
Probab=78.27 E-value=3.2 Score=38.17 Aligned_cols=49 Identities=22% Similarity=0.554 Sum_probs=38.9
Q ss_pred CcccccccccCcc--cceecCCCCCcccHhHHHHHHhc-------CCCCCCCccccccc
Q psy17011 43 SELMCPICLDMLK--KTMTTKECLHRFCSDCIITALRS-------GNKECPTCRKKLVS 92 (321)
Q Consensus 43 ~~l~C~IC~~~l~--~Pvtl~~CgHtFC~~CI~~~l~~-------~~~~CP~Cr~~~~~ 92 (321)
-.--|.+|...+. +.+.+. |.|.|.-.|+..|... ....||.|...+..
T Consensus 49 Y~pNC~LC~t~La~gdt~RLv-CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLV-CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCCceeCCccccCcceeeh-hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 3457999998876 567888 9999999999988652 23589999988863
No 111
>PLN02436 cellulose synthase A
Probab=77.89 E-value=2.3 Score=47.13 Aligned_cols=54 Identities=30% Similarity=0.715 Sum_probs=40.6
Q ss_pred CccCCCCcccccccccCcc-----cc-eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 37 SPRSLHSELMCPICLDMLK-----KT-MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~-----~P-vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+++.+.. -.|.||.+-+- +| |-..+|+--.|+.|.+--.++++..||.|+..+.
T Consensus 30 ~~~~~~~-~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 30 SVQELSG-QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccCC-ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 5555553 48999999643 12 4445799999999996656678899999999885
No 112
>KOG3113|consensus
Probab=77.60 E-value=3.1 Score=38.93 Aligned_cols=56 Identities=11% Similarity=0.268 Sum_probs=40.0
Q ss_pred CCcccccccccCcccc---eecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCCh
Q psy17011 42 HSELMCPICLDMLKKT---MTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADP 100 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~P---vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~ 100 (321)
+..+.|||-.-.|..- +.+..|||.|-..-+.+. +...|++|...+...+.+..|.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCcccccCeEeeCC
Confidence 4679999987766654 233459999988776653 3568999999998655555444
No 113
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=77.60 E-value=1.9 Score=41.54 Aligned_cols=53 Identities=21% Similarity=0.501 Sum_probs=41.0
Q ss_pred ccCCCCcccccccccCcc---cceecCCCCCcccHhHHHHHHhcCC--CCCCCcccccc
Q psy17011 38 PRSLHSELMCPICLDMLK---KTMTTKECLHRFCSDCIITALRSGN--KECPTCRKKLV 91 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~---~Pvtl~~CgHtFC~~CI~~~l~~~~--~~CP~Cr~~~~ 91 (321)
...++.-++||+=.+.-. .|+++. |||..-..-+.+.-++|. +.||.|-....
T Consensus 330 ~~hfHs~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYCP~~~~ 387 (396)
T COG5109 330 GRHFHSLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYCPEMSK 387 (396)
T ss_pred cccccceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCCCcchh
Confidence 457889999998766544 489999 999999988877666543 68999976543
No 114
>KOG3579|consensus
Probab=77.35 E-value=1.8 Score=41.02 Aligned_cols=42 Identities=31% Similarity=0.838 Sum_probs=34.7
Q ss_pred CcccccccccCcccceecCCC----CCcccHhHHHHHHhc----CCCCCCC
Q psy17011 43 SELMCPICLDMLKKTMTTKEC----LHRFCSDCIITALRS----GNKECPT 85 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~C----gHtFC~~CI~~~l~~----~~~~CP~ 85 (321)
.-|.|-+|.+-|.|...+. | .|.||-.|-...++. +..+||.
T Consensus 267 apLcCTLC~ERLEDTHFVQ-CPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CceeehhhhhhhccCceee-cCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 4599999999999998887 6 799999999998874 3356775
No 115
>KOG2932|consensus
Probab=77.17 E-value=1.2 Score=42.72 Aligned_cols=43 Identities=26% Similarity=0.642 Sum_probs=29.7
Q ss_pred ccccccccCcc-cceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 45 LMCPICLDMLK-KTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 45 l~C~IC~~~l~-~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
-.|--|---+. --.+++ |.|.||..|... ...+.||.|-..+.
T Consensus 91 HfCd~Cd~PI~IYGRmIP-CkHvFCl~CAr~---~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIP-CKHVFCLECARS---DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccc-cchhhhhhhhhc---CccccCcCcccHHH
Confidence 35666766433 335667 999999999752 23578999977664
No 116
>KOG1940|consensus
Probab=77.17 E-value=1.4 Score=41.81 Aligned_cols=43 Identities=37% Similarity=0.770 Sum_probs=35.3
Q ss_pred cccccccccCcc----cceecCCCCCcccHhHHHHHHhcCCCCCCCccc
Q psy17011 44 ELMCPICLDMLK----KTMTTKECLHRFCSDCIITALRSGNKECPTCRK 88 (321)
Q Consensus 44 ~l~C~IC~~~l~----~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~ 88 (321)
+.-||||.+.+. .|..++ |||.--..|+..+...+ ..||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccC-CCCCcccc
Confidence 344999999765 455667 99999999999988876 99999988
No 117
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=76.99 E-value=3.6 Score=30.61 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=37.4
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
..|-.+.. .||..||..|+.+.+++..+. -+|| +|+ +|.++.||.+-
T Consensus 11 ~~l~v~~~---~TV~~lK~~I~~~~gi~~~~q----~Li~----~G~--~L~D~~~l~~~ 57 (70)
T cd01794 11 VKLSVSSK---DTVGQLKKQLQAAEGVDPCCQ----RWFF----SGK--LLTDKTRLQET 57 (70)
T ss_pred EEEEECCc---ChHHHHHHHHHHHhCCCHHHe----EEEE----CCe--ECCCCCCHHHc
Confidence 45677788 999999999999999875333 4554 587 99999999873
No 118
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=76.41 E-value=3.9 Score=30.12 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=34.9
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
|..... +||..||+-|+.+.+++..++- ++| +|. +|.++.||.+.+
T Consensus 14 l~v~~~---~TV~~lK~~I~~~~~i~~~~~~----Li~----~Gk--~L~d~~tL~~~~ 59 (71)
T cd01808 14 IEIAED---ASVKDFKEAVSKKFKANQEQLV----LIF----AGK--ILKDTDTLTQHN 59 (71)
T ss_pred EEECCC---ChHHHHHHHHHHHhCCCHHHEE----EEE----CCe--EcCCCCcHHHcC
Confidence 556677 9999999999999987643332 444 577 899999998754
No 119
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=76.33 E-value=2.4 Score=30.56 Aligned_cols=24 Identities=46% Similarity=0.992 Sum_probs=20.3
Q ss_pred CcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 65 HRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 65 HtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.+||..|....+. ..||.|+..+.
T Consensus 29 CTFC~~C~e~~l~---~~CPNCgGelv 52 (57)
T PF06906_consen 29 CTFCADCAETMLN---GVCPNCGGELV 52 (57)
T ss_pred CcccHHHHHHHhc---CcCcCCCCccc
Confidence 4799999998774 47999999886
No 120
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=76.06 E-value=4.6 Score=29.65 Aligned_cols=45 Identities=9% Similarity=0.167 Sum_probs=35.7
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
+..+.. .||.-||..|+.+.+++..+.- +. | +|. .|.++.||.+.
T Consensus 15 ~~v~~~---~tv~~lK~~i~~~~g~~~~~qr---L~-~----~g~--~L~d~~tl~~~ 59 (76)
T cd01806 15 IDIEPT---DKVERIKERVEEKEGIPPQQQR---LI-Y----SGK--QMNDDKTAADY 59 (76)
T ss_pred EEECCC---CCHHHHHHHHhHhhCCChhhEE---EE-E----CCe--EccCCCCHHHc
Confidence 667788 9999999999999999864433 43 3 476 89999999875
No 121
>KOG0314|consensus
Probab=75.28 E-value=1.4 Score=44.48 Aligned_cols=73 Identities=29% Similarity=0.488 Sum_probs=52.5
Q ss_pred ccccCccCCCCccccccc-ccCcccceec-CCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHH
Q psy17011 33 EIAVSPRSLHSELMCPIC-LDMLKKTMTT-KECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLIS 107 (321)
Q Consensus 33 ~~~~~~~~l~~~l~C~IC-~~~l~~Pvtl-~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~ 107 (321)
.++.....+.+++.|++| ...|.+...+ ..|+-+||..||.+.+. ...|+.|.+.-.....+.+...++....
T Consensus 208 ~~a~~v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~--~~~~~~c~~~~~~~~~~~~p~~~r~~~n 282 (448)
T KOG0314|consen 208 SIARTVGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALI--SKSMCVCGASNVLADDLLPPKTLRDTIN 282 (448)
T ss_pred hhhHHhccCCccccCceecchhhHHHHHhhhhhcccCCccccccccc--cccCCcchhhcccccccCCchhhHHHHH
Confidence 445556667899999999 7778777666 67999999999999886 3567777776554445555555554433
No 122
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=75.00 E-value=1.9 Score=42.38 Aligned_cols=29 Identities=38% Similarity=0.902 Sum_probs=22.7
Q ss_pred CCCcccHhHHHHHHhc------------CCCCCCCcccccc
Q psy17011 63 CLHRFCSDCIITALRS------------GNKECPTCRKKLV 91 (321)
Q Consensus 63 CgHtFC~~CI~~~l~~------------~~~~CP~Cr~~~~ 91 (321)
|..-.|.+|+.+|+.. +...||+||+.+-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 5566689999999852 3468999999875
No 123
>PLN02189 cellulose synthase
Probab=74.50 E-value=3.4 Score=45.73 Aligned_cols=54 Identities=28% Similarity=0.679 Sum_probs=40.3
Q ss_pred CccCCCCcccccccccCcc-----cc-eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 37 SPRSLHSELMCPICLDMLK-----KT-MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~-----~P-vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+++.+.. -.|.||.+-+- +| |-..+|+--.|+.|.+--.++++..||.|+..+.
T Consensus 28 ~~~~~~~-~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 28 PLRNLDG-QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CcccccC-ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4455553 38999999744 12 4445799999999996656678899999999885
No 124
>KOG3439|consensus
Probab=74.11 E-value=17 Score=29.88 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=51.4
Q ss_pred CCCCCCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEe
Q psy17011 237 TSETDDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYY 316 (321)
Q Consensus 237 ~~~~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y 316 (321)
++.+++-.+.++. -||.-+-.||...|+|+.++- +.+||-.. |.+ +.+++...++++| ..+.-|+|+|
T Consensus 42 PilK~~k~~i~~t---~tfa~vi~Flkk~Lkl~as~s----lflYVN~s---FAP-sPDq~v~~Ly~cf-~~d~~Lvl~Y 109 (116)
T KOG3439|consen 42 PILKKSKFKINPT---QTFAKVILFLKKFLKLQASDS----LFLYVNNS---FAP-SPDQIVGNLYECF-GTDGKLVLNY 109 (116)
T ss_pred cceecceEEeCcc---hhhHHHHHHHHHHhCCcccCe----EEEEEcCc---cCC-CchhHHHHHHHhc-CCCCEEEEEE
Confidence 3444577788888 899999999999999986443 45576543 533 3477888888887 3445899999
Q ss_pred eec
Q psy17011 317 SWK 319 (321)
Q Consensus 317 ~~~ 319 (321)
...
T Consensus 110 c~s 112 (116)
T KOG3439|consen 110 CIS 112 (116)
T ss_pred eee
Confidence 764
No 125
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=74.11 E-value=5 Score=29.79 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=36.1
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
-|..... +||..||+.|+.+.+++..+. .++| .|. +|.++.||.+.
T Consensus 12 ~l~v~~~---~tV~~lK~~I~~~~gi~~~~q----~L~~----~G~--~L~D~~tL~~~ 57 (74)
T cd01810 12 IYEVQLT---QTVATLKQQVSQRERVQADQF----WLSF----EGR--PMEDEHPLGEY 57 (74)
T ss_pred EEEECCc---ChHHHHHHHHHHHhCCCHHHe----EEEE----CCE--ECCCCCCHHHc
Confidence 4677778 999999999999999875333 3443 577 89999999873
No 126
>KOG3899|consensus
Probab=73.69 E-value=1.9 Score=41.13 Aligned_cols=29 Identities=34% Similarity=0.989 Sum_probs=23.2
Q ss_pred CCCcccHhHHHHHHh------------cCCCCCCCcccccc
Q psy17011 63 CLHRFCSDCIITALR------------SGNKECPTCRKKLV 91 (321)
Q Consensus 63 CgHtFC~~CI~~~l~------------~~~~~CP~Cr~~~~ 91 (321)
|....|++|+.+|+. .+...||+||+.+-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 666779999999874 24678999999875
No 127
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=72.69 E-value=8 Score=29.92 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=41.5
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
=|+.+.. .....|..=|+.||.|+..++ .+-|=...+|++++| ++.-|++++
T Consensus 14 aIrvp~~---~~y~~L~~ki~~kLkl~~e~i----~LsYkde~s~~~v~l-~d~dle~aw 65 (80)
T cd06406 14 AIQVARG---LSYATLLQKISSKLELPAEHI----TLSYKSEASGEDVIL-SDTNMEDVW 65 (80)
T ss_pred EEEcCCC---CCHHHHHHHHHHHhCCCchhc----EEEeccCCCCCccCc-ChHHHHHHH
Confidence 4788888 999999999999999974333 344666677899999 788888775
No 128
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=72.41 E-value=5.2 Score=29.62 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=35.2
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCC-chHHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGN-QSLRQIH 302 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~-~TL~~V~ 302 (321)
-|..+.. .||..||.+|+.+.+++..+. .+|| +|. +|.++ .||++..
T Consensus 13 ~l~v~~~---~TV~~lK~~I~~~~gip~~~q----~Li~----~Gk--~L~D~~~~L~~~g 60 (71)
T cd01796 13 SLDVDPD---LELENFKALCEAESGIPASQQ----QLIY----NGR--ELVDNKRLLALYG 60 (71)
T ss_pred EEEECCc---CCHHHHHHHHHHHhCCCHHHe----EEEE----CCe--EccCCcccHHHcC
Confidence 4677778 999999999999999985333 4554 476 88776 5787653
No 129
>KOG1428|consensus
Probab=72.30 E-value=6.2 Score=45.26 Aligned_cols=48 Identities=29% Similarity=0.677 Sum_probs=35.1
Q ss_pred CcccccccccC--cc-cceecCCCCCcccHhHHHHHHhc---------CCCCCCCcccccc
Q psy17011 43 SELMCPICLDM--LK-KTMTTKECLHRFCSDCIITALRS---------GNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~--l~-~Pvtl~~CgHtFC~~CI~~~l~~---------~~~~CP~Cr~~~~ 91 (321)
.+-+|-||..- -. ..+.+. |+|.|...|..+-+.. +-..||.|..++.
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 45678899763 22 347888 9999999998876653 2248999998874
No 130
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=72.21 E-value=5.4 Score=29.60 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=37.3
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHD 303 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~ 303 (321)
-|..+.. .||.-||+-|+.+.+++..+.. ++| +|. +|.++.||.+.+.
T Consensus 14 ~l~v~~~---~tV~~lK~~i~~~~gi~~~~q~----L~~----~G~--~L~d~~~L~~~~i 61 (74)
T cd01807 14 SLQVSEK---ESVSTLKKLVSEHLNVPEEQQR----LLF----KGK--ALADDKRLSDYSI 61 (74)
T ss_pred EEEECCC---CcHHHHHHHHHHHHCCCHHHeE----EEE----CCE--ECCCCCCHHHCCC
Confidence 3567777 9999999999999999854333 443 577 8999999987653
No 131
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=72.07 E-value=0.29 Score=36.84 Aligned_cols=41 Identities=29% Similarity=0.596 Sum_probs=22.8
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
++.||.|...|.. . =||.+|..|-..+.. ...||.|..++.
T Consensus 1 e~~CP~C~~~L~~----~-~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW----Q-GGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE----E-TTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE----e-CCEEECcccccccee--cccCCCcccHHH
Confidence 5789999986542 2 278889999775544 357999999875
No 132
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=72.00 E-value=3.6 Score=28.31 Aligned_cols=39 Identities=28% Similarity=0.800 Sum_probs=23.1
Q ss_pred ccccccCccc--ceecCCCCCc-----ccHhHHHHHHhc-CCCCCCCc
Q psy17011 47 CPICLDMLKK--TMTTKECLHR-----FCSDCIITALRS-GNKECPTC 86 (321)
Q Consensus 47 C~IC~~~l~~--Pvtl~~CgHt-----FC~~CI~~~l~~-~~~~CP~C 86 (321)
|-||++--.+ |+..| |+-. ....|+.+|+.. +...|++|
T Consensus 1 CrIC~~~~~~~~~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6677775432 45555 6543 478999999984 45679887
No 133
>KOG0308|consensus
Probab=71.66 E-value=3.7 Score=43.03 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=30.5
Q ss_pred ceeeCCCCchHHHHHHhhcCCCCCeEEEeeecc
Q psy17011 288 NFILLPGNQSLRQIHDKYWKSEKPLEVYYSWKK 320 (321)
Q Consensus 288 ~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~~~ 320 (321)
+|++|..+|||.-|.--|||...=|.|+||++.
T Consensus 688 ~fqVldPdM~L~TVr~~iWKs~gDlvl~Yr~k~ 720 (735)
T KOG0308|consen 688 SFQVLDPDMDLRTVRHLIWKSSGDLVLHYRVKV 720 (735)
T ss_pred ceEEeCCCCcHHHhhhheecCCCcEEEEEeeec
Confidence 566999999999999999999999999999875
No 134
>KOG1812|consensus
Probab=71.32 E-value=2.2 Score=42.39 Aligned_cols=42 Identities=31% Similarity=0.681 Sum_probs=29.2
Q ss_pred CcccccccccCcccc----eecCCCCCcccHhHHHHHHhc-----CCCCCCC
Q psy17011 43 SELMCPICLDMLKKT----MTTKECLHRFCSDCIITALRS-----GNKECPT 85 (321)
Q Consensus 43 ~~l~C~IC~~~l~~P----vtl~~CgHtFC~~CI~~~l~~-----~~~~CP~ 85 (321)
...+|.||..-...+ .... |+|.||..|+.+++.. ....||.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~-C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLK-CGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred ccccCccCccccccHhhhHHHhc-ccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 467999999433322 2334 9999999999999873 2346765
No 135
>KOG4718|consensus
Probab=71.07 E-value=2.2 Score=38.79 Aligned_cols=45 Identities=22% Similarity=0.557 Sum_probs=38.6
Q ss_pred ccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccc
Q psy17011 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90 (321)
Q Consensus 45 l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~ 90 (321)
-.|.+|..+...-+....||-.+...|+.+++.. ...||.|+.-.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhccc
Confidence 4899999999988877779888999999999986 77899996543
No 136
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=70.84 E-value=6.7 Score=28.41 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=36.7
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
.-+..... .||..||+-|+.+.+++....- ++| +|+ +|.++.||.+.+
T Consensus 13 ~~~~v~~~---~tv~~lK~~i~~~~gi~~~~q~----L~~----~g~--~L~d~~~L~~~~ 60 (72)
T cd01809 13 HTFTVEEE---ITVLDLKEKIAEEVGIPVEQQR----LIY----SGR--VLKDDETLSEYK 60 (72)
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCcCHHHeE----EEE----CCE--ECCCcCcHHHCC
Confidence 34777788 9999999999999998753332 334 477 899999998754
No 137
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=70.73 E-value=6.1 Score=28.97 Aligned_cols=46 Identities=7% Similarity=0.149 Sum_probs=35.4
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
-|...+. .||..||+.|+.+.+++..++- +. | +|. +|.++.||.+.
T Consensus 14 ~~~v~~~---~tV~~lK~~i~~~~g~~~~~q~---L~-~----~g~--~L~d~~~L~~~ 59 (76)
T cd01803 14 TLEVEPS---DTIENVKAKIQDKEGIPPDQQR---LI-F----AGK--QLEDGRTLSDY 59 (76)
T ss_pred EEEECCc---CcHHHHHHHHHHHhCCCHHHeE---EE-E----CCE--ECCCCCcHHHc
Confidence 3677778 9999999999999998754333 33 3 476 89999998774
No 138
>PLN02400 cellulose synthase
Probab=70.10 E-value=3.4 Score=45.89 Aligned_cols=55 Identities=24% Similarity=0.642 Sum_probs=40.5
Q ss_pred cCccCCCCcccccccccCccc-----c-eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 36 VSPRSLHSELMCPICLDMLKK-----T-MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 36 ~~~~~l~~~l~C~IC~~~l~~-----P-vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.+++.+... .|.||.+-.-- | |-..+|+--.|+.|.+=-.+.++..||.|+..+.
T Consensus 29 kp~~~~~gq-iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 29 KPLKNLNGQ-ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCccccCCc-eeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 356666544 89999996431 2 4445799999999995444568899999999885
No 139
>KOG1815|consensus
Probab=69.09 E-value=2.7 Score=42.45 Aligned_cols=38 Identities=24% Similarity=0.610 Sum_probs=30.8
Q ss_pred CCCCcccccccccCccc-ceecCCCCCcccHhHHHHHHhc
Q psy17011 40 SLHSELMCPICLDMLKK-TMTTKECLHRFCSDCIITALRS 78 (321)
Q Consensus 40 ~l~~~l~C~IC~~~l~~-Pvtl~~CgHtFC~~CI~~~l~~ 78 (321)
.......|.||.+.+.. .+.+. |||.||..|+..++..
T Consensus 66 ~~~~~~~c~ic~~~~~~~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 66 KKKGDVQCGICVESYDGEIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCCccccCCcccCCCcchhhhcC-CCcHHHHHHHHHHhhh
Confidence 34567899999998886 45555 9999999999999863
No 140
>KOG4445|consensus
Probab=68.93 E-value=1.5 Score=41.92 Aligned_cols=50 Identities=28% Similarity=0.616 Sum_probs=37.9
Q ss_pred CCcccccccccCccc-c-eecCCCCCcccHhHHHHHHhc-----------------C-----CCCCCCcccccc
Q psy17011 42 HSELMCPICLDMLKK-T-MTTKECLHRFCSDCIITALRS-----------------G-----NKECPTCRKKLV 91 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~-P-vtl~~CgHtFC~~CI~~~l~~-----------------~-----~~~CP~Cr~~~~ 91 (321)
+....|.||+-=|.+ | .+..+|-|-|...|+.+++.. + ...||+||..+.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 456789999987764 4 555569999999999998631 0 136999999886
No 141
>KOG1100|consensus
Probab=68.64 E-value=2.4 Score=38.55 Aligned_cols=39 Identities=26% Similarity=0.606 Sum_probs=30.0
Q ss_pred ccccccCcccceecCCCCCc-ccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 47 CPICLDMLKKTMTTKECLHR-FCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 47 C~IC~~~l~~Pvtl~~CgHt-FC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
|-.|..--..-+.+| |.|. +|..|-. +...||.|+.+..
T Consensus 161 Cr~C~~~~~~VlllP-CrHl~lC~~C~~-----~~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLP-CRHLCLCGICDE-----SLRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeec-ccceEecccccc-----cCccCCCCcChhh
Confidence 999988777766667 9987 7998853 2557999998764
No 142
>KOG3268|consensus
Probab=68.27 E-value=4.1 Score=36.24 Aligned_cols=29 Identities=31% Similarity=0.710 Sum_probs=24.2
Q ss_pred CCCcccHhHHHHHHhc-----CC-----CCCCCcccccc
Q psy17011 63 CLHRFCSDCIITALRS-----GN-----KECPTCRKKLV 91 (321)
Q Consensus 63 CgHtFC~~CI~~~l~~-----~~-----~~CP~Cr~~~~ 91 (321)
||..|.+-|+..|++. .. ..||.|..++.
T Consensus 190 CgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 190 CGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 9999999999999972 11 37999999875
No 143
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=67.73 E-value=8.1 Score=27.97 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=35.0
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-|..+.. +||..|+..|+.+.+++....- +.+ .|. .|.++.||.+..
T Consensus 13 ~i~v~~~---~tv~~lK~~i~~~~gi~~~~q~---L~~-----~g~--~l~d~~~L~~~~ 59 (71)
T cd01812 13 DLSISSQ---ATFGDLKKMLAPVTGVEPRDQK---LIF-----KGK--ERDDAETLDMSG 59 (71)
T ss_pred EEEECCC---CcHHHHHHHHHHhhCCChHHeE---Eee-----CCc--ccCccCcHHHcC
Confidence 3667778 9999999999999999864333 333 366 788888887654
No 144
>KOG3493|consensus
Probab=67.57 E-value=3 Score=31.01 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=42.8
Q ss_pred CCCCCCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEe
Q psy17011 237 TSETDDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYY 316 (321)
Q Consensus 237 ~~~~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y 316 (321)
.|.+.--|||-+. -||+.++|.||...|-...++. + ...+.++.++-||++.- -.-.--|||||
T Consensus 9 rLGKKVRvKCn~d---DtiGD~KKliaaQtGT~~~kiv----l------~k~~~i~kd~I~L~dye---ihdg~~lelyy 72 (73)
T KOG3493|consen 9 RLGKKVRVKCNTD---DTIGDLKKLIAAQTGTRPEKIV----L------KKWYTIFKDHITLSDYE---IHDGMNLELYY 72 (73)
T ss_pred hcCceEEEEeCCc---ccccCHHHHHHHhhCCChhHhH----H------HhhhhhhhcccceeeEE---eccCccEEEee
Confidence 3433356899999 9999999999999876543332 1 13344666777776532 23455688888
Q ss_pred e
Q psy17011 317 S 317 (321)
Q Consensus 317 ~ 317 (321)
.
T Consensus 73 ~ 73 (73)
T KOG3493|consen 73 Q 73 (73)
T ss_pred C
Confidence 4
No 145
>KOG2169|consensus
Probab=67.28 E-value=5.4 Score=42.26 Aligned_cols=83 Identities=22% Similarity=0.376 Sum_probs=56.2
Q ss_pred ccccCccccccCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHh----cCCCCCCCccccccccccCCCChH
Q psy17011 26 EAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALR----SGNKECPTCRKKLVSKRSLRADPN 101 (321)
Q Consensus 26 ~~i~~~~~~~~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~----~~~~~CP~Cr~~~~~~~~l~~n~~ 101 (321)
..++.+....+..-.+.-.|.|+|+..-+.-|...-.|.|.-|.+-.. ++. .....||+|.+... -..+..|..
T Consensus 288 ~~l~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~~pTW~CPVC~~~~~-~e~l~iD~~ 365 (636)
T KOG2169|consen 288 KKLTAGPDSEIATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQKPTWRCPVCQKAAP-FEGLIIDGY 365 (636)
T ss_pred cccccCCcccceeccceeEecCCcccceeecCCcccccccceecchhh-hHHhccCCCeeeCccCCcccc-ccchhhhHH
Confidence 344555554555566777899999998887776665588876655432 222 23468999998876 567777777
Q ss_pred HHHHHHHHc
Q psy17011 102 FDLLISKIY 110 (321)
Q Consensus 102 l~~lv~kl~ 110 (321)
+.+++..+-
T Consensus 366 ~~~iL~~~~ 374 (636)
T KOG2169|consen 366 FLNILQSCQ 374 (636)
T ss_pred HHHHHhhcc
Confidence 777776553
No 146
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=66.64 E-value=2.1 Score=29.87 Aligned_cols=30 Identities=37% Similarity=0.896 Sum_probs=20.6
Q ss_pred cCCCC-CcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 60 TKECL-HRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 60 l~~Cg-HtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+. |. |-.|..|+...+.. ...||+|..+++
T Consensus 16 i~-C~dHYLCl~CLt~ml~~-s~~C~iC~~~LP 46 (50)
T PF03854_consen 16 IK-CSDHYLCLNCLTLMLSR-SDRCPICGKPLP 46 (50)
T ss_dssp EE--SS-EEEHHHHHHT-SS-SSEETTTTEE--
T ss_pred ee-ecchhHHHHHHHHHhcc-ccCCCcccCcCc
Confidence 44 54 66799999998875 678999999886
No 147
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=66.59 E-value=8.6 Score=28.52 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=37.4
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
.-|..... .||.-||..|+.+.+++..+. .+|| +|. +|.++.||.+.
T Consensus 11 ~~l~v~~~---~tV~~lK~~i~~~~gip~~~q----~Li~----~Gk--~L~D~~tL~~~ 57 (74)
T cd01793 11 HTLEVTGQ---ETVSDIKAHVAGLEGIDVEDQ----VLLL----AGV--PLEDDATLGQC 57 (74)
T ss_pred EEEEECCc---CcHHHHHHHHHhhhCCCHHHE----EEEE----CCe--ECCCCCCHHHc
Confidence 55677778 999999999999999875443 3554 577 99999999874
No 148
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=63.98 E-value=23 Score=26.17 Aligned_cols=68 Identities=16% Similarity=0.270 Sum_probs=48.4
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEe-ecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeeec
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYV-SPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWK 319 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi-~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~~ 319 (321)
+-+.+..+ +|+..|=..++.+++|...+ -|.+++ ....+++.-|..+-+|...... ...|+.|++|.+
T Consensus 9 ~~~~v~~~---~t~~~l~~~v~~~l~l~e~~----~FgL~~~~~~~~~~~wL~~~k~l~~q~~~---~~~~~~l~frvk 77 (80)
T PF09379_consen 9 KTFEVDPK---TTGQDLLEQVCDKLGLKEKE----YFGLQYQVDKDGEHHWLDLDKKLKKQLKK---NNPPFTLYFRVK 77 (80)
T ss_dssp EEEEEETT---SBHHHHHHHHHHHHTTSSGG----GEEEEE-EBTTSSEEEE-SSSBGGGSTBT---SSSSEEEEEEES
T ss_pred EEEEEcCC---CcHHHHHHHHHHHcCCCCcc----EEEEEEeecCCCcceeccCcccHHHHcCC---CCCCEEEEEEEE
Confidence 45677788 99999999999999997422 244444 3334666677777777655443 678999999876
No 149
>KOG2034|consensus
Probab=63.75 E-value=3.5 Score=44.64 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=34.5
Q ss_pred ccCccCCCCcccccccccC-cccceecCCCCCcccHhHHHHHHh
Q psy17011 35 AVSPRSLHSELMCPICLDM-LKKTMTTKECLHRFCSDCIITALR 77 (321)
Q Consensus 35 ~~~~~~l~~~l~C~IC~~~-l~~Pvtl~~CgHtFC~~CI~~~l~ 77 (321)
...-+.+...-.|.+|... +..|-.+.+|||.|.+.||.+...
T Consensus 808 ~~ry~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 808 RQRYRVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred hcceEEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 3344566777899999984 667887777999999999998875
No 150
>PLN02195 cellulose synthase A
Probab=63.28 E-value=6 Score=43.60 Aligned_cols=47 Identities=21% Similarity=0.608 Sum_probs=36.3
Q ss_pred ccccccccCcc-----cc-eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 45 LMCPICLDMLK-----KT-MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 45 l~C~IC~~~l~-----~P-vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
-.|.||.+-+- +| |-..+|+--.|+.|.+=-.++|+..||.|+..+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 47999998433 22 4455799999999996545578899999999885
No 151
>PTZ00044 ubiquitin; Provisional
Probab=62.15 E-value=11 Score=27.71 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=35.9
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
.-|..+.. .||.-||..|+.+.+++..+.- ++| +|. +|.++.||.+-
T Consensus 13 ~~l~v~~~---~tv~~lK~~i~~~~gi~~~~q~----L~~----~g~--~L~d~~~l~~~ 59 (76)
T PTZ00044 13 QSFNFEPD---NTVQQVKMALQEKEGIDVKQIR----LIY----SGK--QMSDDLKLSDY 59 (76)
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCCCHHHeE----EEE----CCE--EccCCCcHHHc
Confidence 34677778 9999999999999999854333 444 477 89999998654
No 152
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=61.30 E-value=4.9 Score=24.33 Aligned_cols=7 Identities=43% Similarity=1.009 Sum_probs=3.3
Q ss_pred ccccccC
Q psy17011 47 CPICLDM 53 (321)
Q Consensus 47 C~IC~~~ 53 (321)
||-|...
T Consensus 3 CP~C~~~ 9 (26)
T PF10571_consen 3 CPECGAE 9 (26)
T ss_pred CCCCcCC
Confidence 4544443
No 153
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=60.57 E-value=6.7 Score=43.51 Aligned_cols=49 Identities=22% Similarity=0.586 Sum_probs=37.8
Q ss_pred CcccccccccCcc-----cc-eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLK-----KT-MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~-----~P-vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
..-.|.||.+-.- +| |-..+|+--.|+.|.+--.++++..||.|+..+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3567999998643 22 4455799999999996555678899999999885
No 154
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=60.00 E-value=7.7 Score=27.42 Aligned_cols=28 Identities=29% Similarity=0.856 Sum_probs=14.7
Q ss_pred ecCCCCCcccHhHHHHHHhcCCCCCCCcc
Q psy17011 59 TTKECLHRFCSDCIITALRSGNKECPTCR 87 (321)
Q Consensus 59 tl~~CgHtFC~~CI~~~l~~~~~~CP~Cr 87 (321)
.-+.|++.||..|=. ++.+....||-|.
T Consensus 23 ~C~~C~~~FC~dCD~-fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 23 RCPKCKNHFCIDCDV-FIHETLHNCPGCE 50 (51)
T ss_dssp --TTTT--B-HHHHH-TTTTTS-SSSTT-
T ss_pred ECCCCCCccccCcCh-hhhccccCCcCCC
Confidence 344699999999943 3333456899884
No 155
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=59.83 E-value=18 Score=26.37 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=38.5
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCC-CCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEG-SDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~-~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.++.... .+|.-|...++.+.+++. ..+. |.+ .|+ .|+++.|+.+..
T Consensus 13 ~~~~v~~~---~~~~~l~~~~~~~~~i~~~~~~~---l~f-----dG~--~L~~~~T~~~~~ 61 (72)
T PF11976_consen 13 IKFKVKPT---TTVSKLIEKYCEKKGIPPEESIR---LIF-----DGK--RLDPNDTPEDLG 61 (72)
T ss_dssp EEEEEETT---SCCHHHHHHHHHHHTTTT-TTEE---EEE-----TTE--EE-TTSCHHHHT
T ss_pred EEEEECCC---CcHHHHHHHHHHhhCCCccceEE---EEE-----CCE--EcCCCCCHHHCC
Confidence 45666777 999999999999999997 5555 666 688 899999998764
No 156
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=59.54 E-value=12 Score=28.23 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=34.8
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
+..... +||..||+-|+.+.+++..+.- ++ +|. +|. +|.++.||.+..
T Consensus 17 ~~v~~~---~TV~~lK~~I~~~~~i~~~~qr---L~-~~~--~G~--~L~D~~tL~~~g 64 (80)
T cd01792 17 VSLRDS---MTVSELKQQIAQKIGVPAFQQR---LA-HLD--SRE--VLQDGVPLVSQG 64 (80)
T ss_pred EEcCCC---CcHHHHHHHHHHHhCCCHHHEE---EE-ecc--CCC--CCCCCCCHHHcC
Confidence 456677 9999999999999988753332 32 121 477 899999998754
No 157
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=59.27 E-value=15 Score=28.10 Aligned_cols=44 Identities=18% Similarity=0.084 Sum_probs=32.7
Q ss_pred CCCCCcchhhhHHHHHHHHhc--cCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 247 VESATDGEVDHLTKYLTMRLR--LEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 247 sa~~~~aTV~HL~KyLa~rl~--l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
|.. +||..||.-|+.+.+ +.. .+.+-+|| .|. +|.++.||.+..
T Consensus 18 ~~~---~TV~~LK~kI~~~~~egi~~---~dqQrLIy----~GK--iL~D~~TL~dyg 63 (75)
T cd01815 18 PGG---YQVSTLKQLIAAQLPDSLPD---PELIDLIH----CGR--KLKDDQTLDFYG 63 (75)
T ss_pred Ccc---CcHHHHHHHHHHhhccCCCC---hHHeEEEe----CCc--CCCCCCcHHHcC
Confidence 456 999999999999974 421 12335665 587 899999999864
No 158
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=58.92 E-value=14 Score=29.71 Aligned_cols=48 Identities=10% Similarity=-0.013 Sum_probs=37.7
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
..|..... .||.-||..|+.+.+++..+.. ++| +|. +|.++.||.+.+
T Consensus 40 ~~leV~~~---~TV~~lK~kI~~~~gip~~~Qr----Li~----~Gk--~L~D~~tL~dy~ 87 (103)
T cd01802 40 FELRVSPF---ETVISVKAKIQRLEGIPVAQQH----LIW----NNM--ELEDEYCLNDYN 87 (103)
T ss_pred EEEEeCCC---CcHHHHHHHHHHHhCCChHHEE----EEE----CCE--ECCCCCcHHHcC
Confidence 44667777 9999999999999998754333 454 587 899999998754
No 159
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=57.75 E-value=10 Score=28.78 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=32.3
Q ss_pred chhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 253 GEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 253 aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
.||..||..|+.+.+++..+.- +|| +|. +|.++.||.+.+
T Consensus 23 ~TV~~lK~~i~~~~gi~~~~Qr----Li~----~Gk--~L~D~~tL~~y~ 62 (78)
T cd01797 23 TKVEELREKIQELFNVEPECQR----LFY----RGK--QMEDGHTLFDYN 62 (78)
T ss_pred CcHHHHHHHHHHHhCCCHHHeE----EEe----CCE--ECCCCCCHHHcC
Confidence 8999999999999998854333 554 577 899999998754
No 160
>KOG1812|consensus
Probab=55.00 E-value=6 Score=39.31 Aligned_cols=43 Identities=35% Similarity=0.637 Sum_probs=31.6
Q ss_pred CCcccccccccCcc-----cceecCCCCCcccHhHHHHHHhcCCCCCCCc
Q psy17011 42 HSELMCPICLDMLK-----KTMTTKECLHRFCSDCIITALRSGNKECPTC 86 (321)
Q Consensus 42 ~~~l~C~IC~~~l~-----~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~C 86 (321)
..-..||.|...+. +-++.. |||-||..|...|.. ++..|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~-~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKT-HNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhh-CCccccCc
Confidence 34568999988765 457888 999999999988765 35555443
No 161
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=54.03 E-value=4.8 Score=34.13 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=25.3
Q ss_pred cccccccccCccc--c-eecCCCC------CcccHhHHHHHHh
Q psy17011 44 ELMCPICLDMLKK--T-MTTKECL------HRFCSDCIITALR 77 (321)
Q Consensus 44 ~l~C~IC~~~l~~--P-vtl~~Cg------HtFC~~CI~~~l~ 77 (321)
.+.|.||.+-+.+ - |-++ || |-||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHh
Confidence 6789999998777 3 3334 66 5689999999954
No 162
>KOG2462|consensus
Probab=53.95 E-value=3.2 Score=39.18 Aligned_cols=55 Identities=22% Similarity=0.473 Sum_probs=36.8
Q ss_pred CCcccccccccCccc-c--------eecCCCCCcccHhHHHH-HHhc---------CCCCCCCccccccccccCC
Q psy17011 42 HSELMCPICLDMLKK-T--------MTTKECLHRFCSDCIIT-ALRS---------GNKECPTCRKKLVSKRSLR 97 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~-P--------vtl~~CgHtFC~~CI~~-~l~~---------~~~~CP~Cr~~~~~~~~l~ 97 (321)
...+.|++|...+.. | .+++ |-..+|..-+.+ ||.+ ..+.||.|++.|.++.|||
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~-c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLR 232 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLP-CECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLR 232 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCC-cccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHH
Confidence 356789999886652 2 3344 666666666554 5542 3579999999998665554
No 163
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=52.90 E-value=9.4 Score=40.68 Aligned_cols=50 Identities=24% Similarity=0.539 Sum_probs=37.7
Q ss_pred CCcccccccccCcccc---------eecCCCCCcc--------------------cHhHHHHHHhc-------CCCCCCC
Q psy17011 42 HSELMCPICLDMLKKT---------MTTKECLHRF--------------------CSDCIITALRS-------GNKECPT 85 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~P---------vtl~~CgHtF--------------------C~~CI~~~l~~-------~~~~CP~ 85 (321)
.+--+|+-|+.-+.+| +....||.+| |..|-..|-.. ....||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 3567999999998888 2223499998 99999887531 3458999
Q ss_pred cccccc
Q psy17011 86 CRKKLV 91 (321)
Q Consensus 86 Cr~~~~ 91 (321)
|+=.+.
T Consensus 179 CGP~~~ 184 (750)
T COG0068 179 CGPHLF 184 (750)
T ss_pred cCCCeE
Confidence 987665
No 164
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=52.57 E-value=28 Score=26.72 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=36.9
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhc-cCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHh
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLR-LEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDK 304 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~-l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~ 304 (321)
|-+... .||.-||.-|+...+ .+ -.+.+-+|| .|. +|.++.||.++...
T Consensus 18 ve~~~~---~TV~~lK~~i~~~~~~~~---~~~~QrLIy----~GK--iLkD~~tL~~~~~~ 67 (79)
T cd01790 18 VSCFLN---WTVGELKTHLSRVYPSKP---LEQDQRLIY----SGK--LLPDHLKLRDVLRK 67 (79)
T ss_pred EecCCc---ChHHHHHHHHHHhcCCCC---ChhHeEEEE----cCe--eccchhhHHHHhhc
Confidence 445667 999999999998764 22 123557887 688 99999999998644
No 165
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=51.75 E-value=18 Score=29.35 Aligned_cols=48 Identities=23% Similarity=0.527 Sum_probs=30.3
Q ss_pred cccccccccCcccce-ec------CCC---CCcccHhHHHHHHh--------cCCCCCCCcccccc
Q psy17011 44 ELMCPICLDMLKKTM-TT------KEC---LHRFCSDCIITALR--------SGNKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pv-tl------~~C---gHtFC~~CI~~~l~--------~~~~~CP~Cr~~~~ 91 (321)
..+|..|..--.+.. .- ..| .-.||..||..... .....||.||..-.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 345666666433322 11 235 77799999987654 24568999998653
No 166
>PF14353 CpXC: CpXC protein
Probab=50.18 E-value=14 Score=30.38 Aligned_cols=46 Identities=24% Similarity=0.407 Sum_probs=25.4
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcCC---CCCCCcccccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGN---KECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~---~~CP~Cr~~~~ 91 (321)
+++||-|...+.-.+-+. -.-..=..=..+.+ .|. ..||.|+..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~-I~~~~~p~l~e~il-~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTS-INADEDPELKEKIL-DGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeE-EcCcCCHHHHHHHH-cCCcCEEECCCCCCcee
Confidence 478998888777554332 11111122222223 333 58999999875
No 167
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=49.09 E-value=40 Score=25.90 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=39.8
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
.+++...+ .||.-|+.-++.+.+++...+- |++ .|. .|.++.|+.+..
T Consensus 24 ~~~~v~~~---~~l~~l~~~y~~~~gi~~~~~r---f~f-----~G~--~L~~~~T~~~l~ 71 (87)
T cd01763 24 VFFKIKRS---TPLKKLMEAYCQRQGLSMNSVR---FLF-----DGQ--RIRDNQTPDDLG 71 (87)
T ss_pred EEEEEcCC---CHHHHHHHHHHHHhCCCccceE---EEE-----CCe--ECCCCCCHHHcC
Confidence 67788888 9999999999999999865554 665 587 899999998764
No 168
>KOG3799|consensus
Probab=48.19 E-value=7.8 Score=32.93 Aligned_cols=40 Identities=25% Similarity=0.672 Sum_probs=27.3
Q ss_pred cCCCCcccccccccC-cccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 39 RSLHSELMCPICLDM-LKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 39 ~~l~~~l~C~IC~~~-l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
..+.++.+|.||+.. |.| -||| -|.-|- ...|..|+..+.
T Consensus 60 aGv~ddatC~IC~KTKFAD-----G~GH-~C~YCq-------~r~CARCGGrv~ 100 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFAD-----GCGH-NCSYCQ-------TRFCARCGGRVS 100 (169)
T ss_pred cccCcCcchhhhhhccccc-----ccCc-ccchhh-------hhHHHhcCCeee
Confidence 345678999999984 333 3999 466674 345777877665
No 169
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=47.28 E-value=63 Score=27.95 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=49.0
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCce-eeCCCCchHHHHHHhhcCCCCCeEEEeeec
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNF-ILLPGNQSLRQIHDKYWKSEKPLEVYYSWK 319 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~-~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~~ 319 (321)
+-+..... .||.-+-..++.+++|.. ... |.+|+...+++. ..|....+|.++..++ .+..|+||.+
T Consensus 16 ~~~~~~~~---~t~~ev~~~v~~~~~l~~-~~~---F~L~~~~~~~~~~~~l~~~~~l~~~~~~~----~~~~l~fr~r 83 (207)
T smart00295 16 LEFEVDSS---TTAEELLETVCRKLGIRE-SEY---FGLQFEDPDEDLSHWLDPAKTLLDQDVKS----EPLTLYFRVK 83 (207)
T ss_pred EEEEECCC---CCHHHHHHHHHHHhCCCc-cce---eEEEEEcCCCCcCeeCCCccCHHHhcCCC----CCcEEEEEEE
Confidence 56788888 999999999999999952 233 777776643332 3677888888887654 5677777653
No 170
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=47.10 E-value=88 Score=23.16 Aligned_cols=67 Identities=15% Similarity=0.274 Sum_probs=51.4
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcC-CCCCeEEEee
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWK-SEKPLEVYYS 317 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk-~~~Pl~l~Y~ 317 (321)
.+.-+.+ .|...|..-|+.++++....+. +. |.-. +|..|.|..+--|......+.. ..++|.|+=.
T Consensus 15 ~~~~~~~---~s~~~L~~~i~~~~~~~~~~~~---l~-Y~D~-dgD~V~i~sd~Dl~~a~~~~~~~~~~~lrl~v~ 82 (84)
T PF00564_consen 15 IISLPSD---VSFDDLRSKIREKFGLLDEDFQ---LK-YKDE-DGDLVTISSDEDLQEAIEQAKESGSKTLRLFVQ 82 (84)
T ss_dssp EEEECST---SHHHHHHHHHHHHHTTSTSSEE---EE-EEET-TSSEEEESSHHHHHHHHHHHHHCTTSCEEEEEE
T ss_pred EEEcCCC---CCHHHHHHHHHHHhCCCCccEE---EE-eeCC-CCCEEEeCCHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3788888 9999999999999999622222 22 4444 5788999999889888888876 5669988743
No 171
>KOG1952|consensus
Probab=47.04 E-value=12 Score=40.62 Aligned_cols=48 Identities=31% Similarity=0.727 Sum_probs=36.2
Q ss_pred CCcccccccccCccc--ce-ecCCCCCcccHhHHHHHHhc------CCCCCCCcccc
Q psy17011 42 HSELMCPICLDMLKK--TM-TTKECLHRFCSDCIITALRS------GNKECPTCRKK 89 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~--Pv-tl~~CgHtFC~~CI~~~l~~------~~~~CP~Cr~~ 89 (321)
...+.|.||.+.+.. || .-.-|.|.|...||.+|-+. ....||.|...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 356899999997763 43 12249999999999999873 34689999843
No 172
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.27 E-value=22 Score=29.28 Aligned_cols=43 Identities=26% Similarity=0.543 Sum_probs=30.2
Q ss_pred cccccccccCcccce-------------ecCCCCCcccHhHHHHHHhcCCCCCCCcc
Q psy17011 44 ELMCPICLDMLKKTM-------------TTKECLHRFCSDCIITALRSGNKECPTCR 87 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pv-------------tl~~CgHtFC~~CI~~~l~~~~~~CP~Cr 87 (321)
.-.|--|+..|.++. .-+.|++.||.+|=.-+-. .-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe-~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE-SLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh-hccCCcCCC
Confidence 345999999887542 2345999999999654333 356899986
No 173
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=45.57 E-value=18 Score=39.19 Aligned_cols=48 Identities=19% Similarity=0.562 Sum_probs=36.9
Q ss_pred Cccccccccc--CcccceecCCCCCc-----ccHhHHHHHHhc-CCCCCCCcccccc
Q psy17011 43 SELMCPICLD--MLKKTMTTKECLHR-----FCSDCIITALRS-GNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~--~l~~Pvtl~~CgHt-----FC~~CI~~~l~~-~~~~CP~Cr~~~~ 91 (321)
+.-+|.||+. .--+|..-| |..+ ..++|+..|+.- +..+|-.|..++.
T Consensus 11 d~~~CRICr~e~~~d~pLfhP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCccc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 4578999886 344677777 7765 378999999984 4579999998875
No 174
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=44.14 E-value=14 Score=27.56 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=9.5
Q ss_pred cccHhHHHHHHhc
Q psy17011 66 RFCSDCIITALRS 78 (321)
Q Consensus 66 tFC~~CI~~~l~~ 78 (321)
.||+-|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999874
No 175
>KOG3053|consensus
Probab=43.98 E-value=20 Score=33.77 Aligned_cols=54 Identities=17% Similarity=0.426 Sum_probs=36.2
Q ss_pred ccCCCCcccccccccCcccceec---CCCCC-----cccHhHHHHHHhcC-------CCCCCCcccccc
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTT---KECLH-----RFCSDCIITALRSG-------NKECPTCRKKLV 91 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl---~~CgH-----tFC~~CI~~~l~~~-------~~~CP~Cr~~~~ 91 (321)
...-..+-.|-||...-.|--.. .+|.. =...+|+.+|+.+. ...||.|+..+.
T Consensus 14 ~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 14 SDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred CCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 34455678999999875543221 12443 25789999999742 247999998764
No 176
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=43.48 E-value=14 Score=23.97 Aligned_cols=13 Identities=23% Similarity=0.764 Sum_probs=8.5
Q ss_pred ccccccccCcccc
Q psy17011 45 LMCPICLDMLKKT 57 (321)
Q Consensus 45 l~C~IC~~~l~~P 57 (321)
++||-|...|.-|
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 5677777766644
No 177
>KOG0824|consensus
Probab=43.44 E-value=6.8 Score=37.56 Aligned_cols=50 Identities=28% Similarity=0.710 Sum_probs=42.0
Q ss_pred CCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 41 l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
..++-+|.||.+.|.-|.+..-|+|.||..|...|... ...||.|+....
T Consensus 102 ~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~-~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM-GNDCPDCRGKIS 151 (324)
T ss_pred cCCccceeeeeeeEEecccccCceeeeeecCCchhhhh-hhccchhhcCcC
Confidence 34667899999999999998889999999999888874 467999887654
No 178
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=43.30 E-value=21 Score=25.54 Aligned_cols=42 Identities=24% Similarity=0.588 Sum_probs=30.5
Q ss_pred cccccccccCcc--cc-eecCCCCCcccHhHHHHHHhcCCCCCCC--ccccc
Q psy17011 44 ELMCPICLDMLK--KT-MTTKECLHRFCSDCIITALRSGNKECPT--CRKKL 90 (321)
Q Consensus 44 ~l~C~IC~~~l~--~P-vtl~~CgHtFC~~CI~~~l~~~~~~CP~--Cr~~~ 90 (321)
.-.|++|.+.|+ +. |.-++||-.+.+.|..+ ...|-. |...+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~-----~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK-----AGGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh-----CCceEeccCCCCc
Confidence 457999999994 44 56688999999999864 345654 55443
No 179
>KOG0309|consensus
Probab=43.08 E-value=16 Score=39.25 Aligned_cols=43 Identities=26% Similarity=0.693 Sum_probs=30.1
Q ss_pred cccccccccCcccc--eecCCCCCcccHhHHHHHHhcCCCCCCC-ccc
Q psy17011 44 ELMCPICLDMLKKT--MTTKECLHRFCSDCIITALRSGNKECPT-CRK 88 (321)
Q Consensus 44 ~l~C~IC~~~l~~P--vtl~~CgHtFC~~CI~~~l~~~~~~CP~-Cr~ 88 (321)
-+.|.||.--..-- +... |||....+|...||+.|. .||. |+.
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~-C~Hv~H~sc~~eWf~~gd-~CpsGCGC 1073 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGT-CGHVGHTSCMMEWFRTGD-VCPSGCGC 1073 (1081)
T ss_pred eeeeeeEeeEeeccchhhcc-ccccccHHHHHHHHhcCC-cCCCCCCc
Confidence 45677765544422 3344 999999999999999754 7887 544
No 180
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=40.40 E-value=4.4 Score=38.42 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=22.8
Q ss_pred cccccccccCcccceecCC----CCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 44 ELMCPICLDMLKKTMTTKE----CLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~----CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.-.||||...-.-.+.... -.+-+|..|-..|--. ...||.|+..-.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~~~ 222 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNTDH 222 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---SS
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCCCC
Confidence 4699999997665554442 2455799998888653 568999988654
No 181
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=39.84 E-value=43 Score=24.88 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=34.5
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
|..... .||..||.-|..+.+++.... -++| .|. +|.++.||.+.+
T Consensus 12 l~v~~~---~TV~~lK~~i~~~~gip~~~q----~L~~----~G~--~L~d~~tL~~~~ 57 (76)
T cd01800 12 FTLQLS---DPVSVLKVKIHEETGMPAGKQ----KLQY----EGI--FIKDSNSLAYYN 57 (76)
T ss_pred EEECCC---CcHHHHHHHHHHHHCCCHHHE----EEEE----CCE--EcCCCCcHHHcC
Confidence 445566 999999999999999885333 3444 466 899999997654
No 182
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=39.83 E-value=16 Score=28.94 Aligned_cols=38 Identities=24% Similarity=0.648 Sum_probs=28.1
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
.-.|.||..-+.. =||.||..|-. ....|.+|++.+..
T Consensus 44 ~~~C~~CK~~v~q------~g~~YCq~CAY-----kkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQ------PGAKYCQTCAY-----KKGICAMCGKKILD 81 (90)
T ss_pred Ccccccccccccc------CCCccChhhhc-----ccCcccccCCeecc
Confidence 3478999875442 38899999954 24589999998853
No 183
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=38.80 E-value=46 Score=24.84 Aligned_cols=49 Identities=6% Similarity=0.076 Sum_probs=37.2
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
|..... +||..||.-|+.+.+++... |=+||--.. |. +|.++.||....
T Consensus 14 v~v~~~---~Tv~~lK~~i~~~tgvp~~~----QKLi~~~~~-Gk--~l~D~~~L~~~~ 62 (74)
T cd01813 14 VTTLSE---DTVLDLKQFIKTLTGVLPER----QKLLGLKVK-GK--PAEDDVKISALK 62 (74)
T ss_pred EEECCC---CCHHHHHHHHHHHHCCCHHH----EEEEeeccc-CC--cCCCCcCHHHcC
Confidence 677777 99999999999999988533 345562223 65 899999998864
No 184
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=38.80 E-value=15 Score=32.11 Aligned_cols=19 Identities=21% Similarity=0.693 Sum_probs=17.2
Q ss_pred CcccccccccCcccceecC
Q psy17011 43 SELMCPICLDMLKKTMTTK 61 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~ 61 (321)
++.+||||++.-.++|.+-
T Consensus 1 ed~~CpICme~PHNAVLLl 19 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLL 19 (162)
T ss_pred CCccCceeccCCCceEEEE
Confidence 4689999999999999887
No 185
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=36.91 E-value=15 Score=25.69 Aligned_cols=40 Identities=20% Similarity=0.575 Sum_probs=23.2
Q ss_pred CcccccccccCcccceecCCCCCcccHhHHHHHHhc-CCCCCCCccccc
Q psy17011 43 SELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS-GNKECPTCRKKL 90 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~-~~~~CP~Cr~~~ 90 (321)
+.+.||.|...+... . ++.-|....... ....||+|...+
T Consensus 1 ~~f~CP~C~~~~~~~-~-------L~~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-S-------LVEHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CCcCCCCCCCccCHH-H-------HHHHHHhHCcCCCCCccCCCchhhh
Confidence 357899998844322 1 223344444332 346899998643
No 186
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=36.24 E-value=62 Score=26.41 Aligned_cols=67 Identities=12% Similarity=0.015 Sum_probs=38.3
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCC----CcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcC-CCCCeEEEe
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGS----DICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWK-SEKPLEVYY 316 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~----~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk-~~~Pl~l~Y 316 (321)
.=+.++++ .||..||.+|....-=+.. ...+..+.+ .|. +|.++-||.+..-..=. ...|..||-
T Consensus 16 ~~~~~~~~---~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~-----~Gr--iL~d~~tL~~~~~~~~~~~~~~~vmHl 85 (111)
T PF13881_consen 16 GPFRFDPS---TTVADLKERIWAEWPEDWEERPKSPSDLRLIY-----AGR--ILEDNKTLSDCRLPSGETPGGPTVMHL 85 (111)
T ss_dssp EEEEE-TT---SBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE-----TTE--EE-SSSBTGGGT--TTSETT--EEEEE
T ss_pred cccccCcc---ChHHHHHHHHHHHCccccccCCCChhhEEEEe-----CCe--ecCCcCcHHHhCCCCCCCCCCCEEEEE
Confidence 34557778 9999999999985411111 222234444 588 89999999988654433 233455554
Q ss_pred ee
Q psy17011 317 SW 318 (321)
Q Consensus 317 ~~ 318 (321)
.+
T Consensus 86 vv 87 (111)
T PF13881_consen 86 VV 87 (111)
T ss_dssp EE
T ss_pred Ee
Confidence 33
No 187
>KOG4642|consensus
Probab=36.21 E-value=36 Score=32.05 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=58.3
Q ss_pred ccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
.+.+.+.+.|.|=++++.+|+.++ =|-+|=+.=|..++..-..-=|+-|.+++ ...+.||..|...|..+.
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~p-sgIty~ra~I~Ehl~rvghfdpvtr~~Lt-e~q~ipN~alkevIa~fl 275 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITP-SGITYDRADIEEHLQRVGHFDPVTRWPLT-EYQLIPNLALKEVIAAFL 275 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCc-cccchhHHHHHHHHHHhccCCchhcccCC-HHhhccchHHHHHHHHHH
Confidence 345567788899999999999999 99999999999999853334588888887 678889999988887775
No 188
>PRK04023 DNA polymerase II large subunit; Validated
Probab=36.18 E-value=25 Score=39.06 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=37.5
Q ss_pred CcccccccccCcccceecCCCCC-----cccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHH
Q psy17011 43 SELMCPICLDMLKKTMTTKECLH-----RFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKI 109 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~CgH-----tFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl 109 (321)
....|+-|........ .+.||. .||..|-.. . +...||.|+...... ......+..++.+.
T Consensus 625 g~RfCpsCG~~t~~fr-CP~CG~~Te~i~fCP~CG~~--~-~~y~CPKCG~El~~~--s~~~i~l~~~~~~A 690 (1121)
T PRK04023 625 GRRKCPSCGKETFYRR-CPFCGTHTEPVYRCPRCGIE--V-EEDECEKCGREPTPY--SKRKIDLKELYDRA 690 (1121)
T ss_pred cCccCCCCCCcCCccc-CCCCCCCCCcceeCccccCc--C-CCCcCCCCCCCCCcc--ceEEecHHHHHHHH
Confidence 4568999998764433 344985 499999332 1 245799999988632 22333444444443
No 189
>KOG0311|consensus
Probab=34.85 E-value=7.2 Score=38.15 Aligned_cols=33 Identities=39% Similarity=0.467 Sum_probs=27.3
Q ss_pred cCCCCCCCCeEEcCCCCCcchhhhHHHHHHHHhccCC
Q psy17011 234 TDDTSETDDKISTVESATDGEVDHLTKYLTMRLRLEG 270 (321)
Q Consensus 234 ~~~~~~~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~ 270 (321)
+|+. .+.+||++|.+ +-|+|++.||..|++++.
T Consensus 125 kd~~-~~~q~i~~si~---~~~~~qs~~~~kr~a~~~ 157 (381)
T KOG0311|consen 125 KDDS-AQIQYIKTSIN---AAVDHQSSYLTKRKALEE 157 (381)
T ss_pred hHHH-HhHHHHhhhHH---HHHhhhhhhhhhhhcccc
Confidence 3444 33479999999 999999999999999854
No 190
>KOG2113|consensus
Probab=34.70 E-value=35 Score=33.11 Aligned_cols=49 Identities=16% Similarity=-0.033 Sum_probs=38.2
Q ss_pred cCCCCcccccccccCcccceecCCCCCc-ccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 39 RSLHSELMCPICLDMLKKTMTTKECLHR-FCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 39 ~~l~~~l~C~IC~~~l~~Pvtl~~CgHt-FC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
..|-..+.|-.|..-+...+-.+ |+|. ||.+|... .....||+|.....
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~-~~~n~~~~~~a~~---s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSG-GNMNLSPGSLASA---SASPTSSTCDHNDH 387 (394)
T ss_pred ccchhhcccccccCceeeeEeec-CCcccChhhhhhc---ccCCccccccccce
Confidence 55677889999998888777778 9998 89999762 23568999977553
No 191
>KOG2979|consensus
Probab=33.36 E-value=22 Score=33.41 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=38.5
Q ss_pred ccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhc-CCCCCCCcccc
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS-GNKECPTCRKK 89 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~-~~~~CP~Cr~~ 89 (321)
...-.=+++|||=...+..|+....|||.|=+.-|...+.. ..-.||+=+..
T Consensus 170 i~~e~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 170 IGQEVFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hhhhhhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 33333468999988889999877779999999999988763 13468874443
No 192
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=32.86 E-value=76 Score=20.27 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=21.0
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCC
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEG 270 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~ 270 (321)
.-+..+.. .||.-|+++|+.+++++.
T Consensus 10 ~~~~~~~~---~tv~~l~~~i~~~~~~~~ 35 (69)
T cd00196 10 VELLVPSG---TTVADLKEKLAKKLGLPP 35 (69)
T ss_pred EEEEcCCC---CcHHHHHHHHHHHHCcCh
Confidence 44566677 999999999999998653
No 193
>KOG2042|consensus
Probab=32.59 E-value=65 Score=35.74 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=58.2
Q ss_pred ccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
.+++.+++.=|+=..++.+||.+|.=|++.|++=|.+++.. ..+=|.||.++. ...+.+|..+..-|..+.
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt-~d~v~pn~eLK~kI~~~~ 934 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLT-EDMVSPNEELKAKIRCWI 934 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCc-hhhcCCCHHHHHHHHHHH
Confidence 44566778888888999999999999999999999999875 445599999997 677778888877776664
No 194
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=32.43 E-value=1.2e+02 Score=24.83 Aligned_cols=51 Identities=10% Similarity=0.152 Sum_probs=39.8
Q ss_pred CCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCC
Q psy17011 241 DDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPG 294 (321)
Q Consensus 241 ~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~ 294 (321)
++-|+.+.. +|+..+-+-|..|+.+|..-++..+|.+|+-...|+.--|.+
T Consensus 37 tK~VrVsS~---~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d 87 (112)
T cd01782 37 TKCIRVSST---ATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLD 87 (112)
T ss_pred EEEEEEecC---CCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCC
Confidence 489999999 999999999999999884323445799998876566445554
No 195
>KOG4185|consensus
Probab=31.99 E-value=14 Score=34.75 Aligned_cols=46 Identities=28% Similarity=0.619 Sum_probs=34.6
Q ss_pred cccccccccCccc------ceecCC-------CCCcccHhHHHHHHhcCCCCCCCcccc
Q psy17011 44 ELMCPICLDMLKK------TMTTKE-------CLHRFCSDCIITALRSGNKECPTCRKK 89 (321)
Q Consensus 44 ~l~C~IC~~~l~~------Pvtl~~-------CgHtFC~~CI~~~l~~~~~~CP~Cr~~ 89 (321)
.-.|.||...+.. |..... |||+.|..|+...+......||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 3568888887662 332333 999999999999887655789999874
No 196
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=31.98 E-value=79 Score=23.69 Aligned_cols=47 Identities=9% Similarity=-0.037 Sum_probs=33.9
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeC-CCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILL-PGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L-~~~~TL~~V~ 302 (321)
.-|..+.. .||..||.-|..+.+++.... .++ . |. .| .++.||.+..
T Consensus 15 ~~l~v~~~---~TV~~lK~kI~~~~gip~~~Q----rL~----~-G~--~L~dD~~tL~~yg 62 (75)
T cd01799 15 IWLTVRPD---MTVAQLKDKVFLDYGFPPAVQ----RWV----I-GQ--RLARDQETLYSHG 62 (75)
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCcCHHHE----EEE----c-CC--eeCCCcCCHHHcC
Confidence 55777788 999999999999999985332 233 3 44 45 5678987654
No 197
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=31.68 E-value=32 Score=24.66 Aligned_cols=11 Identities=27% Similarity=0.881 Sum_probs=7.8
Q ss_pred CCCCCCccccc
Q psy17011 80 NKECPTCRKKL 90 (321)
Q Consensus 80 ~~~CP~Cr~~~ 90 (321)
...||.|++..
T Consensus 28 PlyCpKCK~Et 38 (55)
T PF14205_consen 28 PLYCPKCKQET 38 (55)
T ss_pred cccCCCCCceE
Confidence 34788888754
No 198
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=31.39 E-value=74 Score=26.25 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=34.5
Q ss_pred EcCCCCCcchhhhHHHHHHHHhccCCCCcC---CcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 245 STVESATDGEVDHLTKYLTMRLRLEGSDIC---DSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 245 ~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~---~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
++++. .||..||.-|...-.-+...+. +.+-+|| .|. +|.++.||.+.+
T Consensus 21 ~~~~s---dTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy----sGK--iLeD~~TL~d~~ 72 (113)
T cd01814 21 RYPAA---TTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS----AGK--ILENSKTVGECR 72 (113)
T ss_pred ccChh---hHHHHHHHHHHHhcccccccCCCCHHHeEEEe----CCe--ecCCCCcHHHhC
Confidence 45678 9999999999865532211111 1346776 688 999999999977
No 199
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=31.37 E-value=20 Score=27.51 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=29.0
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeC--CCCchHHHHHHh
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILL--PGNQSLRQIHDK 304 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L--~~~~TL~~V~~~ 304 (321)
.-|.++.. +||.+|+.-|+..++++.. .+.+|..++..+ .| ..+.||.++.-+
T Consensus 16 ~Rie~~~~---~t~~~L~~kI~~~l~~~~~-----~~~L~~~~~~~~--~l~s~~~~tl~~lglk 70 (80)
T PF11543_consen 16 KRIEVSPS---STLSDLKEKISEQLSIPDS-----SQSLSKDRNNKE--ELKSSDSKTLSSLGLK 70 (80)
T ss_dssp EEEEE-TT---SBHHHHHHHHHHHS---TT-----T---BSSGGGGG--CSSS-TT-CCCCT---
T ss_pred EEEEcCCc---ccHHHHHHHHHHHcCCCCc-----ceEEEecCCCCc--ccccCCcCCHHHcCCC
Confidence 34678889 9999999999999998743 256666665333 33 456666655443
No 200
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=30.29 E-value=32 Score=23.78 Aligned_cols=31 Identities=23% Similarity=0.555 Sum_probs=19.3
Q ss_pred cccccccCcc---cceecCCCCCcccHhHHHHHH
Q psy17011 46 MCPICLDMLK---KTMTTKECLHRFCSDCIITAL 76 (321)
Q Consensus 46 ~C~IC~~~l~---~Pvtl~~CgHtFC~~CI~~~l 76 (321)
.|.+|..-|. ....-..||+.||..|.....
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 5677755333 222333499999999986543
No 201
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.24 E-value=15 Score=35.36 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=30.7
Q ss_pred CcccccccccCcccceecC---CCC--CcccHhHHHHHHhcCCCCCCCcccc
Q psy17011 43 SELMCPICLDMLKKTMTTK---ECL--HRFCSDCIITALRSGNKECPTCRKK 89 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~---~Cg--HtFC~~CI~~~l~~~~~~CP~Cr~~ 89 (321)
..-.||+|...-.-.+... .=| +-+|..|-..|--. ...||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 3459999999754333211 134 44689998888653 5689999874
No 202
>KOG0825|consensus
Probab=30.08 E-value=41 Score=36.50 Aligned_cols=47 Identities=11% Similarity=0.311 Sum_probs=30.7
Q ss_pred cccccccccCccccee------cCCCCCcccHhHHHHHHhc-----CCCCCCCccccc
Q psy17011 44 ELMCPICLDMLKKTMT------TKECLHRFCSDCIITALRS-----GNKECPTCRKKL 90 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvt------l~~CgHtFC~~CI~~~l~~-----~~~~CP~Cr~~~ 90 (321)
.-+|.+|..-+.+|+- +..|+|.||-.||..|... ..-.|+.|..-+
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 4566666666555321 1239999999999999762 223677776654
No 203
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.25 E-value=70 Score=31.82 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=36.2
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhc---cCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLR---LEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHD 303 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~---l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~ 303 (321)
-.|..... .||..||+.|..+.+ ++.. .+-+|| .|. +|.++.||.+...
T Consensus 13 ~~IeV~~~---~TV~dLK~kI~~~~g~~~ip~~----~QkLIy----~Gk--iL~Dd~tL~dy~I 64 (378)
T TIGR00601 13 FKIDMEPD---ETVKELKEKIEAEQGKDAYPVA----QQKLIY----SGK--ILSDDKTVREYKI 64 (378)
T ss_pred EEEEeCCc---ChHHHHHHHHHHhhCCCCCChh----HeEEEE----CCE--ECCCCCcHHHcCC
Confidence 33666677 999999999999987 5432 234555 587 9999999988443
No 204
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=29.09 E-value=91 Score=25.31 Aligned_cols=27 Identities=4% Similarity=0.028 Sum_probs=24.2
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCC
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGS 271 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~ 271 (321)
+-|.++++ +||.-||..|..++++.++
T Consensus 17 ~~L~V~~~---~TVg~LK~lImQ~f~V~P~ 43 (107)
T cd01795 17 KALLVSAN---QTLKELKIQIMHAFSVAPF 43 (107)
T ss_pred ceEEeCcc---ccHHHHHHHHHHHhcCCcc
Confidence 56778999 9999999999999999874
No 205
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.90 E-value=37 Score=21.37 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=7.7
Q ss_pred CCCCCCcccc
Q psy17011 80 NKECPTCRKK 89 (321)
Q Consensus 80 ~~~CP~Cr~~ 89 (321)
...||+|+..
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 5689999774
No 206
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=28.49 E-value=97 Score=22.52 Aligned_cols=12 Identities=42% Similarity=1.054 Sum_probs=10.4
Q ss_pred CCCCCCcccccc
Q psy17011 80 NKECPTCRKKLV 91 (321)
Q Consensus 80 ~~~CP~Cr~~~~ 91 (321)
.++||.|++++.
T Consensus 3 HkHC~~CG~~Ip 14 (59)
T PF09889_consen 3 HKHCPVCGKPIP 14 (59)
T ss_pred CCcCCcCCCcCC
Confidence 578999999986
No 208
>KOG2068|consensus
Probab=27.64 E-value=67 Score=31.26 Aligned_cols=47 Identities=34% Similarity=0.694 Sum_probs=33.9
Q ss_pred cccccccccCcc--cceecC-CCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 44 ELMCPICLDMLK--KTMTTK-ECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~--~Pvtl~-~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.-.|+||-..+- +-..+| +||+..|..|+..... +...||.||++..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCccc
Confidence 357999998652 222222 3999989888887766 5789999998775
No 209
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=27.49 E-value=35 Score=31.72 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=16.2
Q ss_pred cccccccccCcc---cceecCCCCCcc
Q psy17011 44 ELMCPICLDMLK---KTMTTKECLHRF 67 (321)
Q Consensus 44 ~l~C~IC~~~l~---~Pvtl~~CgHtF 67 (321)
.|.||+|..-|. ...... .||+|
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred cccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 378999999875 223444 78877
No 210
>KOG2807|consensus
Probab=27.20 E-value=39 Score=32.91 Aligned_cols=45 Identities=24% Similarity=0.660 Sum_probs=29.3
Q ss_pred CCcccccccccCccc--ceecCCCCCcccHhHHHHHHhcCCCCCCCcc
Q psy17011 42 HSELMCPICLDMLKK--TMTTKECLHRFCSDCIITALRSGNKECPTCR 87 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~--Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr 87 (321)
..+-.|-.|.+-+.. -++...|.+.||..|=. ++.+.-..||-|.
T Consensus 328 ~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv-~iHesLh~CpgCe 374 (378)
T KOG2807|consen 328 NGSRFCFACQGELLSSGRYRCESCKNVFCLDCDV-FIHESLHNCPGCE 374 (378)
T ss_pred CCCcceeeeccccCCCCcEEchhccceeeccchH-HHHhhhhcCCCcC
Confidence 344459999554442 24455599999999954 3333356799996
No 211
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=27.01 E-value=43 Score=22.05 Aligned_cols=23 Identities=22% Similarity=0.676 Sum_probs=15.1
Q ss_pred ccccccCccc-ceecCCCCCcccH
Q psy17011 47 CPICLDMLKK-TMTTKECLHRFCS 69 (321)
Q Consensus 47 C~IC~~~l~~-Pvtl~~CgHtFC~ 69 (321)
|.+|.....- |..-..|+..||.
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~ 24 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCG 24 (39)
T ss_pred CcccCCcccccCeECCccCCcccc
Confidence 5566664444 7666668888875
No 212
>KOG3476|consensus
Probab=26.73 E-value=9.8 Score=29.84 Aligned_cols=41 Identities=22% Similarity=0.679 Sum_probs=30.2
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccccccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRS 95 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~ 95 (321)
.-.|.||......| |..||..|..+ ...|.+|++.+....+
T Consensus 54 ~~kC~iCk~~vHQ~------GshYC~tCAY~-----KgiCAMCGKki~nTK~ 94 (100)
T KOG3476|consen 54 LAKCRICKQLVHQP------GSHYCQTCAYK-----KGICAMCGKKILNTKN 94 (100)
T ss_pred cchhHHHHHHhcCC------cchhHhHhhhh-----hhHHHHhhhHhhcccc
Confidence 45799999887765 55699999753 4579999998864443
No 213
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=26.71 E-value=39 Score=21.81 Aligned_cols=11 Identities=27% Similarity=0.845 Sum_probs=5.6
Q ss_pred ccccccccCcc
Q psy17011 45 LMCPICLDMLK 55 (321)
Q Consensus 45 l~C~IC~~~l~ 55 (321)
++|+-|...|.
T Consensus 3 i~Cp~C~~~y~ 13 (36)
T PF13717_consen 3 ITCPNCQAKYE 13 (36)
T ss_pred EECCCCCCEEe
Confidence 45555555444
No 214
>PF15616 TerY-C: TerY-C metal binding domain
Probab=26.54 E-value=30 Score=29.28 Aligned_cols=49 Identities=27% Similarity=0.525 Sum_probs=36.2
Q ss_pred ccCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 35 AVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 35 ~~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.+....|...-.||-|...+.=.+. . ||+.||-. ..+...||-|.....
T Consensus 68 ~vntseL~g~PgCP~CGn~~~fa~C-~-CGkl~Ci~------g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 68 KVNTSELIGAPGCPHCGNQYAFAVC-G-CGKLFCID------GEGEVTCPWCGNEGS 116 (131)
T ss_pred EEehHHhcCCCCCCCCcChhcEEEe-c-CCCEEEeC------CCCCEECCCCCCeee
Confidence 4445566677899999998776665 6 99999842 124579999998765
No 215
>KOG1654|consensus
Probab=26.03 E-value=3.8e+02 Score=22.14 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=41.6
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
+|| .|+. .||.++-+-|+.|+.|...+. |+++ . ++ +..+.+.++..|.+.+-....=|=|.|+-
T Consensus 48 KyL-VP~d---ltvgqfi~iIRkRiqL~~~kA----~flf--V--n~-~~p~ts~~ms~~Ye~~kdeDgFLYm~Ys~ 111 (116)
T KOG1654|consen 48 KYL-VPDD---LTVGQFIKIIRKRIQLSPEKA----FFLF--V--NN-TSPPTSATMSALYEEEKDEDGFLYMTYSG 111 (116)
T ss_pred eee-cccc---ccHHHHHHHHHHHhccChhHe----EEEE--E--cC-cCCcchhhHHHHHHhhcccCcEEEEEecc
Confidence 665 6888 999999999999999985332 3332 2 22 14444555556665555566667677764
No 216
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=25.95 E-value=15 Score=21.95 Aligned_cols=10 Identities=50% Similarity=1.062 Sum_probs=4.9
Q ss_pred CCCCCCcccc
Q psy17011 80 NKECPTCRKK 89 (321)
Q Consensus 80 ~~~CP~Cr~~ 89 (321)
...||.|+.+
T Consensus 16 ~~fC~~CG~~ 25 (26)
T PF13248_consen 16 AKFCPNCGAK 25 (26)
T ss_pred cccChhhCCC
Confidence 3455555543
No 217
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=25.88 E-value=17 Score=32.13 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.1
Q ss_pred CCCCCCCcccccccc
Q psy17011 79 GNKECPTCRKKLVSK 93 (321)
Q Consensus 79 ~~~~CP~Cr~~~~~~ 93 (321)
..+.||.|+..+..-
T Consensus 135 ~~F~Cp~Cg~~L~~~ 149 (178)
T PRK06266 135 YGFRCPQCGEMLEEY 149 (178)
T ss_pred cCCcCCCCCCCCeec
Confidence 478999999998743
No 218
>KOG2231|consensus
Probab=25.69 E-value=46 Score=35.47 Aligned_cols=44 Identities=27% Similarity=0.668 Sum_probs=34.0
Q ss_pred cccccccCcccceecCCCCC-cccHhHHHHHHhcC-----CCCCCCccccc
Q psy17011 46 MCPICLDMLKKTMTTKECLH-RFCSDCIITALRSG-----NKECPTCRKKL 90 (321)
Q Consensus 46 ~C~IC~~~l~~Pvtl~~CgH-tFC~~CI~~~l~~~-----~~~CP~Cr~~~ 90 (321)
-|.||..-+.-+..-. ||| ..|..|..+..... ...||+|+..+
T Consensus 2 ~c~ic~~s~~~~~~~s-~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGS-CGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCcccccccc-ccccccchhhhhhhhhhcccccccccCcccccce
Confidence 4899988777777777 999 89999998875422 24679999844
No 219
>PRK11595 DNA utilization protein GntX; Provisional
Probab=25.63 E-value=47 Score=30.23 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=21.6
Q ss_pred cccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccc
Q psy17011 46 MCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90 (321)
Q Consensus 46 ~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~ 90 (321)
.|.+|...+... ....|..|...+-.- ...||.|..+.
T Consensus 7 ~C~~C~~~~~~~------~~~lC~~C~~~l~~~-~~~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPLALS------HWGICSVCSRALRTL-KTCCPQCGLPA 44 (227)
T ss_pred cCccCCCccCCC------CCcccHHHHhhCCcc-cCcCccCCCcC
Confidence 577887655321 123677787654221 24688887654
No 220
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=25.55 E-value=33 Score=28.05 Aligned_cols=46 Identities=24% Similarity=0.530 Sum_probs=27.1
Q ss_pred CcccccccccCc---c-cceecCCCCCcccHhHHHHHHhcCCCCCCCccc
Q psy17011 43 SELMCPICLDML---K-KTMTTKECLHRFCSDCIITALRSGNKECPTCRK 88 (321)
Q Consensus 43 ~~l~C~IC~~~l---~-~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~ 88 (321)
.+-.|.+|...| . .......|+|.+|+.|-...-......|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 456899997643 2 244455699999999965411112336777765
No 221
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.44 E-value=55 Score=30.27 Aligned_cols=27 Identities=30% Similarity=0.650 Sum_probs=21.3
Q ss_pred ccHhHHHHHHhcCCCCCCCccccccccc
Q psy17011 67 FCSDCIITALRSGNKECPTCRKKLVSKR 94 (321)
Q Consensus 67 FC~~CI~~~l~~~~~~CP~Cr~~~~~~~ 94 (321)
-|.+|-...-++ ...||+|+....++.
T Consensus 196 ~C~sC~qqIHRN-APiCPlCK~KsRSrn 222 (230)
T PF10146_consen 196 TCQSCHQQIHRN-APICPLCKAKSRSRN 222 (230)
T ss_pred hhHhHHHHHhcC-CCCCcccccccccCC
Confidence 489998887774 679999999876543
No 222
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=24.95 E-value=52 Score=35.56 Aligned_cols=72 Identities=15% Similarity=0.312 Sum_probs=41.6
Q ss_pred ccCCCCcccccccccCccccee-----c-CCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHcC
Q psy17011 38 PRSLHSELMCPICLDMLKKTMT-----T-KECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYP 111 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvt-----l-~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~~ 111 (321)
-+.+...+.|.-|..++.-|-. . ..=+..+|.-|-.. ..-...||.|+...- ...-.--..+.+-+.++||
T Consensus 429 RRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~--~~~p~~Cp~Cgs~~L-~~~G~GterieeeL~~~FP 505 (730)
T COG1198 429 RRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQ--EPIPQSCPECGSEHL-RAVGPGTERIEEELKRLFP 505 (730)
T ss_pred cCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCC--CCCCCCCCCCCCCee-EEecccHHHHHHHHHHHCC
Confidence 3556677888888888776621 1 11234456666432 223568999998721 1111223456677778887
Q ss_pred C
Q psy17011 112 S 112 (321)
Q Consensus 112 ~ 112 (321)
+
T Consensus 506 ~ 506 (730)
T COG1198 506 G 506 (730)
T ss_pred C
Confidence 3
No 223
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=24.78 E-value=36 Score=36.20 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=9.5
Q ss_pred CceeeCCCCchHHH
Q psy17011 287 NNFILLPGNQSLRQ 300 (321)
Q Consensus 287 ~~~~~L~~~~TL~~ 300 (321)
|+++.|..+|++..
T Consensus 515 g~l~QLT~DHs~~~ 528 (645)
T PRK14559 515 GGLEQLTVDHEVGQ 528 (645)
T ss_pred CeEEEeCCCCCHHH
Confidence 56667777777643
No 224
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.33 E-value=2.9e+02 Score=25.40 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=14.2
Q ss_pred chhhhHHHHHHHHhccCC
Q psy17011 253 GEVDHLTKYLTMRLRLEG 270 (321)
Q Consensus 253 aTV~HL~KyLa~rl~l~~ 270 (321)
.=|.||--.||.-|+++.
T Consensus 202 gyvahlv~lls~yL~v~L 219 (302)
T PF10186_consen 202 GYVAHLVSLLSRYLGVPL 219 (302)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 557788888888888874
No 225
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=24.24 E-value=55 Score=37.36 Aligned_cols=48 Identities=29% Similarity=0.614 Sum_probs=31.4
Q ss_pred cccccccccCcccceecCCCCCcc-----cHhHHHHHHh--cCCCCCCCccccccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRF-----CSDCIITALR--SGNKECPTCRKKLVS 92 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtF-----C~~CI~~~l~--~~~~~CP~Cr~~~~~ 92 (321)
.+.||-|....... ..+.||... |..|=...-. .+...||.|..++..
T Consensus 667 ~rkCPkCG~~t~~~-fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~ 721 (1337)
T PRK14714 667 RRRCPSCGTETYEN-RCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTP 721 (1337)
T ss_pred EEECCCCCCccccc-cCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccc
Confidence 47999999865544 445588664 8888543211 113379999988764
No 226
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=24.12 E-value=37 Score=36.57 Aligned_cols=69 Identities=20% Similarity=0.398 Sum_probs=46.1
Q ss_pred CcccccccccCcccc---------eecCCCCCcc--------------------cHhHHHHHHhc-------CCCCCCCc
Q psy17011 43 SELMCPICLDMLKKT---------MTTKECLHRF--------------------CSDCIITALRS-------GNKECPTC 86 (321)
Q Consensus 43 ~~l~C~IC~~~l~~P---------vtl~~CgHtF--------------------C~~CI~~~l~~-------~~~~CP~C 86 (321)
+--+|.-|+.-+.+| +....||..| |..|...+... ....||.|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~C 146 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRC 146 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCC
Confidence 567999999999988 3333599888 99999998542 23489999
Q ss_pred cccccccc---cCCCChHHHHHHHHHcC
Q psy17011 87 RKKLVSKR---SLRADPNFDLLISKIYP 111 (321)
Q Consensus 87 r~~~~~~~---~l~~n~~l~~lv~kl~~ 111 (321)
+=.+.... .......+...+..+..
T Consensus 147 gp~l~l~~~~g~~~~~~~i~~aa~~L~~ 174 (711)
T TIGR00143 147 GPQLNFVSRGGHAEQDDALLEAAKLLKK 174 (711)
T ss_pred CcEEEEEeCCCCccchHHHHHHHHHHhC
Confidence 88775321 11113456666665554
No 227
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=23.84 E-value=23 Score=34.27 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=30.4
Q ss_pred CcccccccccCccccee-c-CCCCC--cccHhHHHHHHhcCCCCCCCccc
Q psy17011 43 SELMCPICLDMLKKTMT-T-KECLH--RFCSDCIITALRSGNKECPTCRK 88 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvt-l-~~CgH--tFC~~CI~~~l~~~~~~CP~Cr~ 88 (321)
..-.||+|...-.-.+. . ..=|+ -+|..|-..|--. ...||.|+.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-CccCCCCCC
Confidence 46799999997543332 1 11343 4589998888653 568999986
No 228
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=23.82 E-value=28 Score=34.41 Aligned_cols=35 Identities=14% Similarity=0.426 Sum_probs=25.9
Q ss_pred ccCCCCcccccccccC-cccceecCCCCCcccHhHHH
Q psy17011 38 PRSLHSELMCPICLDM-LKKTMTTKECLHRFCSDCII 73 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~-l~~Pvtl~~CgHtFC~~CI~ 73 (321)
.......+.|.-|... ...-..++ ||..||+.||.
T Consensus 33 ~~~~~gk~~C~RC~~~~~~~~~~lp-~~~~YCr~Cl~ 68 (441)
T COG4098 33 IIIENGKYRCNRCGNTHIELFAKLP-CGCLYCRNCLM 68 (441)
T ss_pred eecccCcEEehhcCCcchhhhcccc-cceEeehhhhh
Confidence 3334567899999853 44456677 99999999995
No 229
>KOG1609|consensus
Probab=23.54 E-value=46 Score=31.16 Aligned_cols=47 Identities=19% Similarity=0.516 Sum_probs=32.7
Q ss_pred cccccccccCccc----ceecCCCCC-----cccHhHHHHHHhc-CCCCCCCcccccc
Q psy17011 44 ELMCPICLDMLKK----TMTTKECLH-----RFCSDCIITALRS-GNKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~~----Pvtl~~CgH-----tFC~~CI~~~l~~-~~~~CP~Cr~~~~ 91 (321)
...|.||...... ++..+ |.. ...+.|+..|+.. +...|..|...+.
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 5789999984432 33444 433 2468999999973 5678999988765
No 230
>KOG0289|consensus
Probab=23.31 E-value=77 Score=32.13 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=41.5
Q ss_pred ccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 45 l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+.|.|-.++-.+||..+.-||.|=++=|++++.. +..||+-.+++.
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs 46 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLS 46 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCC
Confidence 4699999999999999889999999999999996 778999888765
No 231
>PLN02248 cellulose synthase-like protein
Probab=22.87 E-value=53 Score=37.03 Aligned_cols=29 Identities=38% Similarity=0.941 Sum_probs=25.5
Q ss_pred CCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 62 ECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 62 ~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+|+...|+.|....+.. ...||-|+.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 177 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKS-GGICPGCKEPYK 177 (1135)
T ss_pred cccchhHHhHhhhhhhc-CCCCCCCccccc
Confidence 69999999999999986 568999999874
No 232
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=22.52 E-value=31 Score=25.00 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=14.8
Q ss_pred CcccccccccCcc---cceecCCCCCcccHhHHHH
Q psy17011 43 SELMCPICLDMLK---KTMTTKECLHRFCSDCIIT 74 (321)
Q Consensus 43 ~~l~C~IC~~~l~---~Pvtl~~CgHtFC~~CI~~ 74 (321)
+.-.|.+|...|. .-.--.-||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 3457888888763 2233335999999988753
No 233
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.46 E-value=42 Score=28.44 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=12.6
Q ss_pred ccccCcccceecCCCCCcccH
Q psy17011 49 ICLDMLKKTMTTKECLHRFCS 69 (321)
Q Consensus 49 IC~~~l~~Pvtl~~CgHtFC~ 69 (321)
||+.--..-+.. +|||.||.
T Consensus 62 i~qs~~~rv~rc-ecghsf~d 81 (165)
T COG4647 62 ICQSAQKRVIRC-ECGHSFGD 81 (165)
T ss_pred EEecccccEEEE-eccccccC
Confidence 455554443344 49999996
No 234
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=21.95 E-value=48 Score=22.08 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=13.9
Q ss_pred ccc--cccCcccceecCCCCCcccHhH
Q psy17011 47 CPI--CLDMLKKTMTTKECLHRFCSDC 71 (321)
Q Consensus 47 C~I--C~~~l~~Pvtl~~CgHtFC~~C 71 (321)
|.+ |.....-|+.-+.|+..||..-
T Consensus 1 C~~~~C~~~~~~~~~C~~C~~~FC~~H 27 (43)
T PF01428_consen 1 CSFPGCKKKDFLPFKCKHCGKSFCLKH 27 (43)
T ss_dssp -SSTTT--BCTSHEE-TTTS-EE-TTT
T ss_pred CccCcCcCccCCCeECCCCCcccCccc
Confidence 455 7777667887777999998643
No 235
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.77 E-value=50 Score=26.94 Aligned_cols=24 Identities=21% Similarity=0.600 Sum_probs=14.5
Q ss_pred cHhHHHHHH--hcCCCCCCCcccccc
Q psy17011 68 CSDCIITAL--RSGNKECPTCRKKLV 91 (321)
Q Consensus 68 C~~CI~~~l--~~~~~~CP~Cr~~~~ 91 (321)
|-+|-.++. ......||.|+..+.
T Consensus 12 Cp~CG~kFYDLnk~PivCP~CG~~~~ 37 (108)
T PF09538_consen 12 CPSCGAKFYDLNKDPIVCPKCGTEFP 37 (108)
T ss_pred CCCCcchhccCCCCCccCCCCCCccC
Confidence 444444433 233457999999886
No 236
>KOG3362|consensus
Probab=21.70 E-value=30 Score=29.77 Aligned_cols=28 Identities=29% Similarity=0.718 Sum_probs=18.6
Q ss_pred ccccccccCcccceecCCCCCcccH-hHHHH
Q psy17011 45 LMCPICLDMLKKTMTTKECLHRFCS-DCIIT 74 (321)
Q Consensus 45 l~C~IC~~~l~~Pvtl~~CgHtFC~-~CI~~ 74 (321)
-+|.||. ++..-..+. ||..||. .|+..
T Consensus 119 ~fCaVCG-~~S~ysC~~-CG~kyCsv~C~~~ 147 (156)
T KOG3362|consen 119 KFCAVCG-YDSKYSCVN-CGTKYCSVRCLKT 147 (156)
T ss_pred hhhhhcC-CCchhHHHh-cCCceeechhhhh
Confidence 4799998 555444556 9999874 45543
No 237
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.57 E-value=45 Score=26.48 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=11.6
Q ss_pred cccHhHHHHHHhc
Q psy17011 66 RFCSDCIITALRS 78 (321)
Q Consensus 66 tFC~~CI~~~l~~ 78 (321)
.||+.|+..|.+.
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999974
No 238
>PF12773 DZR: Double zinc ribbon
Probab=21.56 E-value=72 Score=21.52 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=14.7
Q ss_pred CcccHhHHHHHH--hcCCCCCCCcccccc
Q psy17011 65 HRFCSDCIITAL--RSGNKECPTCRKKLV 91 (321)
Q Consensus 65 HtFC~~CI~~~l--~~~~~~CP~Cr~~~~ 91 (321)
-.||..|=.... ......||.|+..+.
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENP 40 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCc
Confidence 345555554433 223456888877654
No 239
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=21.20 E-value=16 Score=21.35 Aligned_cols=9 Identities=44% Similarity=1.069 Sum_probs=4.3
Q ss_pred CCCCCcccc
Q psy17011 81 KECPTCRKK 89 (321)
Q Consensus 81 ~~CP~Cr~~ 89 (321)
..||.|+.+
T Consensus 14 ~fC~~CG~~ 22 (23)
T PF13240_consen 14 KFCPNCGTP 22 (23)
T ss_pred cchhhhCCc
Confidence 345555543
No 240
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=21.05 E-value=3.6e+02 Score=20.06 Aligned_cols=68 Identities=9% Similarity=0.054 Sum_probs=46.8
Q ss_pred CCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCC-CceeeCCCCchHHHHHHhhcCCCCCeEEE
Q psy17011 241 DDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSS-NNFILLPGNQSLRQIHDKYWKSEKPLEVY 315 (321)
Q Consensus 241 ~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~-~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~ 315 (321)
.+-|..+.. +|...+-+-++.|++++. +..+|.+|.-..+ +.--.|.++--.-+|. ..|.+..+..-|
T Consensus 14 ~kti~V~~~---~t~~~Vi~~~l~k~~l~~---~~~~y~L~ev~~~~~~er~L~~~e~pl~~~-~~~~~~~~~~~F 82 (87)
T cd01768 14 YKTLRVSKD---TTAQDVIQQLLKKFGLDD---DPEDYALVEVLGDGGLERLLLPDECPLQIQ-LNAPRQREDLRF 82 (87)
T ss_pred EEEEEECCC---CCHHHHHHHHHHHhCCcC---CcccEEEEEEECCceEEEEeCCCCChHHHH-HhcCCCCCcEEE
Confidence 488999999 999999999999999984 3355777765543 1222566555555555 668765544333
No 241
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=21.05 E-value=22 Score=30.75 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=12.0
Q ss_pred CCCCCCCcccccccc
Q psy17011 79 GNKECPTCRKKLVSK 93 (321)
Q Consensus 79 ~~~~CP~Cr~~~~~~ 93 (321)
..+.||.|+.++..-
T Consensus 127 ~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 127 LNFTCPRCGAMLDYL 141 (158)
T ss_pred cCCcCCCCCCEeeec
Confidence 378999999998633
No 242
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=20.98 E-value=59 Score=22.62 Aligned_cols=10 Identities=40% Similarity=0.949 Sum_probs=5.6
Q ss_pred CCCCcccccc
Q psy17011 82 ECPTCRKKLV 91 (321)
Q Consensus 82 ~CP~Cr~~~~ 91 (321)
.||+|+.++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 8999999886
No 243
>KOG0010|consensus
Probab=20.80 E-value=97 Score=31.81 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=35.4
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHH
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQ 300 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~ 300 (321)
+..+.. .||.-||--|+.++..+.+.+ ++|| .|. +|.++.||.+
T Consensus 29 ~~V~~~---ssV~qlKE~I~~~f~a~~dql----vLIf----aGr--ILKD~dTL~~ 72 (493)
T KOG0010|consen 29 VNVASD---SSVLQLKELIAQRFGAPPDQL----VLIY----AGR--ILKDDDTLKQ 72 (493)
T ss_pred Eecccc---hHHHHHHHHHHHhcCCChhHe----eeee----cCc--cccChhhHHH
Confidence 445556 999999999999998875444 5886 577 9999999986
No 244
>KOG3993|consensus
Probab=20.77 E-value=12 Score=37.64 Aligned_cols=50 Identities=20% Similarity=0.546 Sum_probs=34.5
Q ss_pred cCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccC
Q psy17011 39 RSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSL 96 (321)
Q Consensus 39 ~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l 96 (321)
.....+++|.+|...|.|+..+. .| -| .||.. -...||.|.+.|.-..|+
T Consensus 262 ~n~iGdyiCqLCK~kYeD~F~LA--QH-rC-~RIV~----vEYrCPEC~KVFsCPANL 311 (500)
T KOG3993|consen 262 PNVIGDYICQLCKEKYEDAFALA--QH-RC-PRIVH----VEYRCPECDKVFSCPANL 311 (500)
T ss_pred cccHHHHHHHHHHHhhhhHHHHh--hc-cC-CeeEE----eeecCCcccccccCchhh
Confidence 44557899999999999998776 34 23 24431 245799999988754443
No 245
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=20.66 E-value=1.1e+02 Score=26.51 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=17.1
Q ss_pred CCCcccHhHHHHHHh----------cCCCCCCCcccccc
Q psy17011 63 CLHRFCSDCIITALR----------SGNKECPTCRKKLV 91 (321)
Q Consensus 63 CgHtFC~~CI~~~l~----------~~~~~CP~Cr~~~~ 91 (321)
+||.|= .||. .+...||+|+..-.
T Consensus 10 ~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~V 43 (148)
T PF06676_consen 10 NGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTEV 43 (148)
T ss_pred CCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCeE
Confidence 899883 3553 35679999988654
Done!