Query psy17011
Match_columns 321
No_of_seqs 268 out of 1638
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 19:32:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gs2_A E3 ubiquitin-protein li 100.0 2.3E-34 7.7E-39 226.9 9.1 81 237-320 19-111 (111)
2 2ckl_B Ubiquitin ligase protei 99.9 6.8E-25 2.3E-29 189.6 4.8 150 6-155 16-165 (165)
3 1t1h_A Gspef-atpub14, armadill 99.6 6.5E-16 2.2E-20 116.6 4.9 69 40-110 4-72 (78)
4 3fl2_A E3 ubiquitin-protein li 99.6 5.9E-16 2E-20 127.3 4.6 75 38-113 46-120 (124)
5 3ztg_A E3 ubiquitin-protein li 99.6 1.5E-15 5E-20 118.2 6.5 74 37-110 6-80 (92)
6 2kr4_A Ubiquitin conjugation f 99.6 1.6E-15 5.6E-20 117.2 6.6 72 36-110 6-77 (85)
7 2kre_A Ubiquitin conjugation f 99.6 2.5E-15 8.7E-20 119.7 7.2 72 36-110 21-92 (100)
8 2ckl_A Polycomb group ring fin 99.6 3.1E-15 1.1E-19 120.0 6.1 87 36-123 7-96 (108)
9 1wgm_A Ubiquitin conjugation f 99.5 7.3E-15 2.5E-19 116.6 6.6 71 37-110 15-86 (98)
10 1z6u_A NP95-like ring finger p 99.5 4.9E-15 1.7E-19 126.3 4.2 76 37-113 71-146 (150)
11 3lrq_A E3 ubiquitin-protein li 99.5 3.2E-15 1.1E-19 118.7 1.5 77 31-109 9-86 (100)
12 2yu4_A E3 SUMO-protein ligase 99.5 3.3E-14 1.1E-18 111.8 5.3 70 40-110 3-80 (94)
13 2y43_A E3 ubiquitin-protein li 99.5 2.1E-14 7.2E-19 113.3 3.8 72 37-110 15-86 (99)
14 3l11_A E3 ubiquitin-protein li 99.4 1.6E-14 5.6E-19 117.0 1.5 73 38-111 9-87 (115)
15 2c2l_A CHIP, carboxy terminus 99.4 7.9E-14 2.7E-18 128.0 6.2 71 39-111 203-273 (281)
16 2egp_A Tripartite motif-contai 99.4 6E-15 2E-19 111.2 -1.5 67 37-105 5-77 (79)
17 2f42_A STIP1 homology and U-bo 99.4 1.2E-13 4.2E-18 120.9 6.0 72 37-110 99-170 (179)
18 2yur_A Retinoblastoma-binding 99.4 1.8E-13 6.3E-18 102.4 5.9 63 35-97 6-69 (74)
19 4ayc_A E3 ubiquitin-protein li 99.4 1.2E-13 4.2E-18 115.6 5.0 67 41-112 50-116 (138)
20 2ecw_A Tripartite motif-contai 99.4 4.3E-14 1.5E-18 107.4 1.7 67 37-105 12-83 (85)
21 3knv_A TNF receptor-associated 99.4 8.3E-14 2.8E-18 117.5 3.1 76 35-111 22-105 (141)
22 2ecv_A Tripartite motif-contai 99.4 6.2E-14 2.1E-18 106.5 1.9 67 37-105 12-83 (85)
23 1jm7_B BARD1, BRCA1-associated 99.4 4.3E-14 1.5E-18 115.1 0.7 71 35-110 13-84 (117)
24 2csy_A Zinc finger protein 183 99.4 3E-13 1E-17 102.7 5.2 63 38-104 9-71 (81)
25 3hct_A TNF receptor-associated 99.4 2.7E-13 9.1E-18 110.5 4.5 73 37-111 11-83 (118)
26 3htk_C E3 SUMO-protein ligase 99.4 3.3E-13 1.1E-17 124.1 5.6 72 37-109 174-248 (267)
27 2ecy_A TNF receptor-associated 99.4 5.3E-13 1.8E-17 97.5 5.4 54 37-91 8-61 (66)
28 2djb_A Polycomb group ring fin 99.4 7.1E-13 2.4E-17 98.5 5.9 56 35-91 6-61 (72)
29 1rmd_A RAG1; V(D)J recombinati 99.4 3.4E-13 1.2E-17 109.3 4.3 73 37-110 16-88 (116)
30 2ysl_A Tripartite motif-contai 99.3 9.3E-13 3.2E-17 97.7 5.4 54 37-91 13-68 (73)
31 1jm7_A BRCA1, breast cancer ty 99.3 2.1E-13 7.2E-18 109.3 1.4 70 39-110 16-87 (112)
32 2ysj_A Tripartite motif-contai 99.3 2.1E-12 7.3E-17 93.3 5.4 50 36-86 12-63 (63)
33 3hcs_A TNF receptor-associated 99.3 2.2E-12 7.4E-17 111.3 4.1 72 38-111 12-83 (170)
34 1g25_A CDK-activating kinase a 99.2 2.7E-12 9.3E-17 93.4 3.2 53 43-97 2-59 (65)
35 2ecj_A Tripartite motif-contai 99.2 6.7E-12 2.3E-16 88.7 4.9 50 36-86 7-58 (58)
36 2ct2_A Tripartite motif protei 99.2 8.1E-12 2.8E-16 95.6 5.3 56 35-91 6-67 (88)
37 2d8t_A Dactylidin, ring finger 99.2 4.3E-12 1.5E-16 94.0 2.9 50 40-91 11-60 (71)
38 2ea6_A Ring finger protein 4; 99.2 8.8E-12 3E-16 91.0 4.4 53 37-91 8-67 (69)
39 3ng2_A RNF4, snurf, ring finge 99.2 8.4E-12 2.9E-16 91.8 4.1 50 40-91 6-62 (71)
40 1e4u_A Transcriptional repress 99.1 6.1E-11 2.1E-15 90.1 5.6 56 37-92 4-62 (78)
41 2xeu_A Ring finger protein 4; 99.1 2.7E-11 9.1E-16 87.1 2.7 47 43-91 2-55 (64)
42 2ect_A Ring finger protein 126 99.1 6.2E-11 2.1E-15 89.0 4.7 54 37-92 8-64 (78)
43 2ep4_A Ring finger protein 24; 99.1 9.9E-11 3.4E-15 87.0 4.9 54 37-92 8-64 (74)
44 2ecn_A Ring finger protein 141 99.1 4E-11 1.4E-15 88.2 2.6 53 37-92 8-60 (70)
45 1iym_A EL5; ring-H2 finger, ub 99.1 8.7E-11 3E-15 82.2 3.7 50 41-91 2-54 (55)
46 1bor_A Transcription factor PM 99.0 5.5E-11 1.9E-15 84.3 2.1 45 42-91 4-48 (56)
47 1chc_A Equine herpes virus-1 r 99.0 1.5E-10 5.2E-15 84.5 3.7 47 43-91 4-51 (68)
48 2ecm_A Ring finger and CHY zin 99.0 1.7E-10 5.9E-15 80.6 3.8 47 43-91 4-54 (55)
49 2kiz_A E3 ubiquitin-protein li 99.0 3.3E-10 1.1E-14 83.0 5.1 51 39-91 9-62 (69)
50 1x4j_A Ring finger protein 38; 99.0 4E-10 1.4E-14 84.1 4.8 49 41-91 20-71 (75)
51 2l0b_A E3 ubiquitin-protein li 99.0 2.7E-10 9.3E-15 88.5 4.0 50 40-91 36-88 (91)
52 1v87_A Deltex protein 2; ring- 99.0 4.2E-10 1.5E-14 90.5 4.7 52 43-95 24-97 (114)
53 4ap4_A E3 ubiquitin ligase RNF 98.9 3E-10 1E-14 92.8 3.4 49 42-92 5-60 (133)
54 4ic3_A E3 ubiquitin-protein li 98.9 1.7E-10 5.7E-15 86.4 -0.2 48 38-91 18-66 (74)
55 2y1n_A E3 ubiquitin-protein li 98.8 2.3E-09 7.8E-14 103.9 4.5 51 42-93 330-380 (389)
56 2bay_A PRE-mRNA splicing facto 98.8 1.6E-09 5.3E-14 78.5 2.3 54 44-99 3-56 (61)
57 2ecl_A Ring-box protein 2; RNF 98.8 2.9E-09 1E-13 81.0 3.7 48 43-91 14-75 (81)
58 2ecg_A Baculoviral IAP repeat- 98.8 1E-09 3.4E-14 82.2 0.3 48 38-91 19-67 (75)
59 4ap4_A E3 ubiquitin ligase RNF 98.7 3.2E-09 1.1E-13 86.6 2.4 48 42-91 70-124 (133)
60 1wim_A KIAA0161 protein; ring 98.6 5.8E-09 2E-13 81.3 1.1 47 43-89 4-61 (94)
61 2vje_A E3 ubiquitin-protein li 98.6 1.5E-08 5.3E-13 73.6 2.8 47 43-91 7-56 (64)
62 2vje_B MDM4 protein; proto-onc 98.6 2.6E-08 9E-13 72.2 2.9 47 43-91 6-55 (63)
63 2yho_A E3 ubiquitin-protein li 98.6 6.3E-09 2.1E-13 79.0 -0.6 48 39-92 13-61 (79)
64 3dpl_R Ring-box protein 1; ubi 98.5 4.8E-08 1.6E-12 78.3 4.1 48 43-91 36-100 (106)
65 3t6p_A Baculoviral IAP repeat- 98.4 1.8E-08 6E-13 96.6 -0.7 48 38-91 289-337 (345)
66 2ea5_A Cell growth regulator w 98.4 1.6E-07 5.3E-12 69.2 4.3 44 43-92 14-58 (68)
67 2d8s_A Cellular modulator of i 98.3 5.2E-07 1.8E-11 68.6 4.5 54 43-97 14-75 (80)
68 4a0k_B E3 ubiquitin-protein li 98.3 9.4E-08 3.2E-12 78.0 0.0 47 44-91 48-111 (117)
69 2ct0_A Non-SMC element 1 homol 97.9 6.9E-06 2.4E-10 61.5 3.9 48 44-91 15-63 (74)
70 3vk6_A E3 ubiquitin-protein li 97.7 2.3E-05 8E-10 61.6 3.7 46 46-92 3-49 (101)
71 1vyx_A ORF K3, K3RING; zinc-bi 97.3 0.00019 6.7E-09 51.2 4.2 48 43-91 5-58 (60)
72 3k1l_B Fancl; UBC, ring, RWD, 97.2 7.7E-05 2.6E-09 71.0 1.0 50 42-91 306-372 (381)
73 3m62_A Ubiquitin conjugation f 97.0 0.00064 2.2E-08 72.3 5.9 70 38-110 885-955 (968)
74 2jun_A Midline-1; B-BOX, TRIM, 96.4 0.0013 4.3E-08 51.2 2.3 33 43-76 2-37 (101)
75 3nw0_A Non-structural maintena 95.8 0.0056 1.9E-07 55.4 3.9 48 44-91 180-228 (238)
76 4gdk_A Ubiquitin-like protein 94.2 0.27 9.2E-06 37.8 8.7 67 241-319 21-87 (91)
77 3i2d_A E3 SUMO-protein ligase 93.1 0.094 3.2E-06 50.3 5.1 67 41-108 246-315 (371)
78 2zjd_A Microtubule-associated 93.0 0.26 9E-06 40.4 7.1 68 239-318 53-120 (130)
79 3w1s_C Ubiquitin-like protein 92.4 0.41 1.4E-05 36.8 7.1 63 242-319 25-87 (91)
80 4fo9_A E3 SUMO-protein ligase 92.1 0.092 3.2E-06 50.1 3.6 68 40-108 211-281 (360)
81 3plu_A Ubiquitin-like modifier 91.5 0.25 8.6E-06 38.2 4.9 59 242-316 34-92 (93)
82 3rui_B Autophagy-related prote 91.1 0.89 3E-05 36.5 7.9 68 239-319 47-114 (118)
83 1eo6_A GATE-16, golgi-associat 89.6 1.6 5.4E-05 34.9 8.2 68 239-319 45-112 (117)
84 2cs3_A Protein C14ORF4, MY039 88.9 0.23 8E-06 37.3 2.6 43 42-85 13-63 (93)
85 1weo_A Cellulose synthase, cat 88.4 0.5 1.7E-05 36.1 4.2 49 43-91 15-69 (93)
86 1wz3_A Autophagy 12B, ATG12B, 87.9 2.6 9E-05 32.5 8.2 64 241-319 29-92 (96)
87 1uh6_A Ubiquitin-like 5; beta- 86.7 0.69 2.3E-05 36.1 4.2 58 243-316 42-99 (100)
88 3h9d_A ATG8, microtubule-assoc 85.6 4.2 0.00014 32.6 8.5 68 239-319 48-115 (119)
89 2dzi_A Ubiquitin-like protein 85.5 1 3.5E-05 32.4 4.5 60 242-317 20-79 (81)
90 2r2q_A Gamma-aminobutyric acid 85.4 5 0.00017 31.6 8.8 64 242-317 46-109 (110)
91 3a9j_A Ubiquitin; protein comp 85.1 0.83 2.8E-05 32.3 3.8 60 242-317 13-72 (76)
92 3n3k_B Ubiquitin; hydrolase, p 85.0 0.64 2.2E-05 33.9 3.2 60 242-317 16-75 (85)
93 2ko5_A Ring finger protein Z; 85.0 0.87 3E-05 35.2 3.9 54 36-92 20-73 (99)
94 1ndd_A NEDD8, protein (ubiquit 84.7 0.92 3.1E-05 32.0 3.9 60 242-317 13-72 (76)
95 3mtn_B UBA80, ubcep1, ubiquiti 84.4 0.93 3.2E-05 32.9 3.9 60 242-317 16-75 (85)
96 3dbh_I NEDD8; cell cycle, acti 84.3 1.2 4.1E-05 32.6 4.5 48 242-302 25-72 (88)
97 2bwf_A Ubiquitin-like protein 84.0 0.94 3.2E-05 32.3 3.6 48 242-302 16-63 (77)
98 1wh3_A 59 kDa 2'-5'-oligoadeny 84.0 1.7 5.9E-05 31.7 5.2 48 242-302 20-67 (87)
99 3phx_B Ubiquitin-like protein 83.5 1.1 3.8E-05 32.2 3.9 48 242-302 17-64 (79)
100 1wju_A NEDD8 ultimate buster-1 83.0 1.6 5.5E-05 33.9 4.8 48 242-302 32-79 (100)
101 1wx8_A Riken cDNA 4931431F19; 82.9 1.8 6.1E-05 32.5 5.0 48 242-302 29-76 (96)
102 2uyz_B Small ubiquitin-related 82.9 1.4 5E-05 31.6 4.3 48 242-302 16-63 (79)
103 3k9o_B Ubiquitin, UBB+1; E2-25 82.8 1.1 3.8E-05 33.6 3.8 61 242-318 14-74 (96)
104 1wgd_A Homocysteine-responsive 82.4 2.1 7.1E-05 32.0 5.2 47 242-301 22-70 (93)
105 3m95_A Autophagy related prote 82.3 7.4 0.00025 31.4 8.7 68 239-319 53-120 (125)
106 4dwf_A HLA-B-associated transc 81.6 1.2 4.2E-05 32.9 3.6 48 242-302 18-65 (90)
107 3v6c_B Ubiquitin; structural g 81.3 1.5 5.2E-05 32.6 4.1 48 242-302 30-77 (91)
108 4hcn_B Polyubiquitin, ubiquiti 81.2 1.5 5.1E-05 33.3 4.0 48 242-302 35-82 (98)
109 1wx7_A Ubiquilin 3; ubiquitin- 80.5 2 7E-05 33.0 4.6 48 243-303 30-77 (106)
110 4fbj_B NEDD8; effector-HOST ta 79.7 1.7 5.9E-05 32.2 3.8 61 242-318 13-73 (88)
111 4eew_A Large proline-rich prot 79.7 1.5 5.3E-05 32.2 3.6 48 242-302 30-77 (88)
112 2l7r_A Ubiquitin-like protein 79.5 2.8 9.4E-05 31.5 5.0 49 242-303 30-78 (93)
113 1wyw_B Ubiquitin-like protein 79.0 2.2 7.6E-05 32.3 4.3 48 242-302 34-81 (97)
114 1sif_A Ubiquitin; hydrophobic 78.7 1.9 6.5E-05 32.0 3.8 60 242-317 22-81 (88)
115 1wy8_A NP95-like ring finger p 78.7 3 0.0001 30.6 4.9 61 242-318 21-82 (89)
116 2hj8_A Interferon-induced 17 k 78.4 2.3 8E-05 31.4 4.2 61 242-318 17-77 (88)
117 1yx5_B Ubiquitin; proteasome, 76.7 2.2 7.7E-05 32.1 3.7 48 242-302 13-60 (98)
118 1ttn_A DC-UBP, dendritic cell- 76.5 3.8 0.00013 31.5 5.1 49 242-303 36-84 (106)
119 2kd0_A LRR repeats and ubiquit 76.4 2.6 9E-05 31.1 4.0 48 242-302 24-71 (85)
120 2klc_A Ubiquilin-1; ubiquitin- 76.3 1.9 6.6E-05 33.0 3.3 60 242-317 37-96 (101)
121 2kk8_A Uncharacterized protein 76.0 3.2 0.00011 30.6 4.4 49 242-303 23-72 (84)
122 3m63_B Ubiquitin domain-contai 75.6 2.3 8E-05 32.6 3.6 48 242-302 40-87 (101)
123 2kan_A Uncharacterized protein 75.2 3.6 0.00012 31.0 4.5 49 242-303 27-76 (94)
124 3vdz_A Ubiquitin-40S ribosomal 75.1 2.3 7.9E-05 33.2 3.5 60 242-317 48-107 (111)
125 1yqb_A Ubiquilin 3; structural 74.9 3.2 0.00011 31.7 4.2 48 243-303 35-82 (100)
126 2daf_A FLJ35834 protein; hypot 74.9 3.6 0.00012 33.0 4.6 47 244-303 31-77 (118)
127 2fnj_B Transcription elongatio 73.9 3.6 0.00012 33.0 4.3 50 242-304 14-63 (118)
128 2faz_A Ubiquitin-like containi 73.7 2.9 9.8E-05 29.8 3.5 59 243-317 17-76 (78)
129 1j8c_A Ubiquitin-like protein 72.6 3.1 0.00011 33.3 3.7 49 242-303 44-92 (125)
130 3m62_B UV excision repair prot 72.6 2.6 8.8E-05 32.6 3.2 48 242-302 14-61 (106)
131 2ojr_A Ubiquitin; lanthide-bin 69.8 3.9 0.00013 31.7 3.7 60 242-317 48-107 (111)
132 2wyq_A HHR23A, UV excision rep 69.2 4.5 0.00015 29.2 3.7 61 242-318 18-81 (85)
133 1v5t_A 8430435I17RIK protein; 67.6 7.1 0.00024 29.0 4.6 45 245-302 23-70 (90)
134 3b1l_X E3 ubiquitin-protein li 70.8 1.1 3.8E-05 31.9 0.0 48 243-303 14-61 (76)
135 1x1m_A Ubiquitin-like protein 67.4 5.9 0.0002 30.5 4.3 42 253-303 45-88 (107)
136 1we7_A SF3A1 protein; structur 67.2 6.9 0.00024 30.5 4.6 60 242-317 48-107 (115)
137 1v5o_A 1700011N24RIK protein; 66.9 7.7 0.00026 29.5 4.8 46 244-302 26-72 (102)
138 2kdb_A Homocysteine-responsive 66.6 7.6 0.00026 29.7 4.7 48 242-301 38-86 (99)
139 2kdi_A Ubiquitin, vacuolar pro 66.2 4.6 0.00016 31.6 3.4 48 242-302 22-69 (114)
140 1uel_A HHR23B, UV excision rep 65.7 7.1 0.00024 29.2 4.3 48 242-302 13-63 (95)
141 2lxa_A Ubiquitin-like protein 64.3 8.1 0.00028 28.9 4.3 44 246-302 20-64 (87)
142 4dbg_A Ranbp-type and C3HC4-ty 63.3 5.6 0.00019 31.1 3.3 59 242-315 39-97 (105)
143 4ajy_B Transcription elongatio 63.2 5.1 0.00018 32.1 3.1 66 241-319 13-80 (118)
144 3l0w_B Monoubiquitinated proli 62.7 7.5 0.00026 32.6 4.3 48 242-302 13-60 (169)
145 3a4r_A Nfatc2-interacting prot 62.6 15 0.0005 26.7 5.4 48 242-302 21-68 (79)
146 1oey_A P67-PHOX, neutrophil cy 61.4 16 0.00054 27.4 5.4 63 241-315 15-79 (83)
147 1wxv_A BAG-family molecular ch 60.8 13 0.00045 27.3 5.0 40 253-302 32-72 (92)
148 3rt3_B Ubiquitin-like protein 60.2 7.3 0.00025 31.8 3.7 48 242-302 94-141 (159)
149 4eku_A Protein-tyrosine kinase 60.1 17 0.00059 34.6 6.9 74 241-319 39-117 (392)
150 3vth_A Hydrogenase maturation 59.6 10 0.00035 39.6 5.5 70 42-111 109-214 (761)
151 3q3f_A Ribonuclease/ubiquitin 59.0 9 0.00031 33.0 4.2 48 242-302 118-165 (189)
152 3b08_A Polyubiquitin-C, ubiqui 59.0 8.1 0.00028 30.8 3.8 49 242-303 13-61 (152)
153 1we6_A Splicing factor, putati 58.6 7.7 0.00026 29.9 3.4 47 243-302 44-91 (111)
154 2al6_A Focal adhesion kinase 1 57.8 26 0.00089 32.9 7.6 72 241-319 23-97 (375)
155 3b08_A Polyubiquitin-C, ubiqui 57.5 8.4 0.00029 30.7 3.6 61 242-318 89-149 (152)
156 2xqn_T Testin, TESS; metal-bin 56.9 6.7 0.00023 30.7 2.8 62 26-91 11-74 (126)
157 4a20_A Ubiquitin-like protein 56.6 6.6 0.00023 30.1 2.7 45 245-302 37-82 (98)
158 1z60_A TFIIH basal transcripti 56.6 6.8 0.00023 27.5 2.5 41 45-86 16-58 (59)
159 1v86_A DNA segment, CHR 7, way 55.1 11 0.00039 28.2 3.8 46 243-302 30-75 (95)
160 1wm3_A Ubiquitin-like protein 55.0 13 0.00045 26.3 3.9 48 242-302 14-61 (72)
161 1wgg_A Ubiquitin carboxyl-term 53.4 8.5 0.00029 29.1 2.8 44 244-301 22-65 (96)
162 4g9i_A Hydrogenase maturation 52.9 8.5 0.00029 40.2 3.5 70 42-111 104-212 (772)
163 4b6w_A Tubulin-specific chaper 52.5 11 0.00036 28.1 3.1 50 244-301 19-70 (86)
164 1m3v_A FLIN4, fusion of the LI 52.3 8.3 0.00028 30.2 2.7 63 27-91 14-80 (122)
165 3u5e_m 60S ribosomal protein L 51.7 3.1 0.00011 33.2 0.0 26 242-270 13-38 (128)
166 2rgt_A Fusion of LIM/homeobox 51.1 17 0.00057 30.1 4.6 62 26-91 14-76 (169)
167 3u30_A Ubiquitin, linear DI-ub 51.0 12 0.00041 31.0 3.6 48 242-302 33-80 (172)
168 2j0j_A Focal adhesion kinase 1 49.7 49 0.0017 33.3 8.6 72 241-319 23-97 (656)
169 2jne_A Hypothetical protein YF 47.7 0.85 2.9E-05 35.4 -3.7 49 36-91 24-72 (101)
170 3mjh_B Early endosome antigen 47.2 4.1 0.00014 25.4 0.0 15 44-58 5-19 (34)
171 1rut_X Flinc4, fusion protein 45.9 9.3 0.00032 32.3 2.1 63 26-91 13-80 (188)
172 3u30_A Ubiquitin, linear DI-ub 45.9 20 0.00067 29.6 4.2 48 242-302 109-156 (172)
173 3u5c_f 40S ribosomal protein S 45.1 4.5 0.00015 33.6 0.0 48 242-302 13-60 (152)
174 2ct7_A Ring finger protein 31; 44.5 8.4 0.00029 28.6 1.4 30 46-75 27-61 (86)
175 4a3p_A Ubiquitin carboxyl-term 43.7 37 0.0013 29.4 5.8 53 242-301 142-195 (217)
176 2io1_B Small ubiquitin-related 43.5 15 0.00053 27.7 2.8 48 242-302 20-67 (94)
177 1wgh_A Ubiquitin-like 3, HCG-1 43.2 21 0.00072 28.2 3.7 51 242-301 29-83 (116)
178 2k8h_A Small ubiquitin protein 43.1 34 0.0012 26.7 4.9 48 242-302 39-86 (110)
179 1se9_A Ubiquitin family; ubiqu 42.8 32 0.0011 27.6 4.8 49 244-301 32-83 (126)
180 2io0_B Small ubiquitin-related 42.6 20 0.00067 26.9 3.3 48 242-302 18-65 (91)
181 2xjy_A Rhombotin-2; oncoprotei 42.3 13 0.00043 29.2 2.3 63 27-91 11-77 (131)
182 2lbm_A Transcriptional regulat 42.3 16 0.00056 30.0 3.0 45 43-88 62-116 (142)
183 3rt3_B Ubiquitin-like protein 39.5 26 0.00089 28.3 3.9 51 242-304 15-66 (159)
184 1wz0_A Ubiquitin-like protein 39.2 25 0.00084 27.1 3.5 48 242-302 37-84 (104)
185 1wia_A Hypothetical ubiquitin- 38.9 17 0.00058 26.9 2.4 45 242-302 20-65 (95)
186 2jtn_A LIM domain-binding prot 38.6 17 0.00058 30.4 2.6 61 27-91 69-130 (182)
187 3ttc_A HYPF, transcriptional r 38.4 11 0.00038 38.6 1.7 48 43-90 16-99 (657)
188 2kjr_A CG11242; UBL, ubiquitin 36.9 59 0.002 24.4 5.3 50 244-302 32-83 (95)
189 1v6e_A Cytoskeleton-associated 36.8 34 0.0012 25.3 3.9 51 243-301 22-74 (95)
190 1ef1_A Moesin; membrane, FERM 36.6 71 0.0024 28.4 6.7 66 244-319 15-80 (294)
191 3kyd_D Small ubiquitin-related 36.6 27 0.00093 27.6 3.4 48 242-302 53-100 (115)
192 2o35_A Hypothetical protein DU 35.4 15 0.00051 28.5 1.5 13 66-78 42-54 (105)
193 3fyb_A Protein of unknown func 35.3 15 0.00051 28.5 1.5 13 66-78 41-53 (104)
194 2gmg_A Hypothetical protein PF 35.0 8.3 0.00028 30.2 0.1 29 56-91 67-95 (105)
195 1v2y_A 3300001G02RIK protein; 34.8 17 0.00057 28.2 1.8 51 243-302 21-83 (105)
196 3ai5_A Yeast enhanced green fl 34.6 30 0.001 32.0 3.9 49 242-303 246-294 (307)
197 2lri_C Autoimmune regulator; Z 34.3 22 0.00077 25.1 2.3 47 43-90 11-60 (66)
198 2d07_B Ubiquitin-like protein 34.2 27 0.00092 26.2 2.9 48 242-302 30-77 (93)
199 2zet_C Melanophilin; complex, 32.8 19 0.00064 30.0 1.9 30 43-72 67-100 (153)
200 1wil_A KIAA1045 protein; ring 32.5 54 0.0018 24.7 4.1 51 38-88 9-75 (89)
201 1joc_A EEA1, early endosomal a 32.3 17 0.00058 29.0 1.5 30 44-73 69-101 (125)
202 2gow_A HCG-1 protein, ubiquiti 32.0 21 0.00071 28.6 2.0 51 242-301 30-84 (125)
203 1zbd_B Rabphilin-3A; G protein 31.9 18 0.0006 29.4 1.6 31 42-72 53-87 (134)
204 2kj6_A Tubulin folding cofacto 31.8 56 0.0019 24.7 4.4 51 243-301 30-82 (97)
205 1x61_A Thyroid receptor intera 31.3 63 0.0021 22.1 4.3 42 35-77 23-66 (72)
206 3ql9_A Transcriptional regulat 29.9 34 0.0012 27.6 2.9 44 44-88 57-110 (129)
207 2cup_A Skeletal muscle LIM-pro 28.9 11 0.00039 28.0 -0.1 57 31-91 19-77 (101)
208 1y02_A CARP2, FYVE-ring finger 28.4 25 0.00085 28.0 1.9 48 42-90 17-67 (120)
209 2pv0_B DNA (cytosine-5)-methyl 28.0 35 0.0012 32.6 3.1 28 62-89 112-148 (386)
210 1iml_A CRIP, cysteine rich int 27.8 32 0.0011 24.1 2.3 51 36-90 18-71 (76)
211 2jrp_A Putative cytoplasmic pr 27.7 3.2 0.00011 31.1 -3.3 10 45-54 3-12 (81)
212 2kzr_A Ubiquitin thioesterase 27.7 53 0.0018 23.7 3.5 50 244-302 14-65 (86)
213 1t0y_A Tubulin folding cofacto 27.7 63 0.0022 25.2 4.2 51 243-301 21-73 (122)
214 2l5u_A Chromodomain-helicase-D 27.2 31 0.0011 23.8 2.0 47 42-89 9-58 (61)
215 2eke_C Ubiquitin-like protein 27.1 40 0.0014 26.1 2.8 49 241-302 42-90 (106)
216 2i1j_A Moesin; FERM, coiled-co 26.4 1.2E+02 0.0042 30.2 7.0 66 244-319 18-83 (575)
217 3pge_A SUMO-modified prolifera 26.3 44 0.0015 28.9 3.2 48 242-302 41-88 (200)
218 3t7l_A Zinc finger FYVE domain 26.3 25 0.00085 26.3 1.4 30 44-73 20-52 (90)
219 1vfy_A Phosphatidylinositol-3- 25.8 42 0.0014 23.9 2.6 28 46-73 13-43 (73)
220 1z2q_A LM5-1; membrane protein 25.6 67 0.0023 23.5 3.7 31 43-73 20-53 (84)
221 3uk3_C Zinc finger protein 217 25.4 14 0.00047 23.7 -0.2 40 44-91 4-43 (57)
222 2jmo_A Parkin; IBR, E3 ligase, 25.2 24 0.00083 25.7 1.2 32 44-75 25-68 (80)
223 2lce_A B-cell lymphoma 6 prote 24.8 15 0.00051 25.1 -0.1 38 42-91 15-56 (74)
224 1dvp_A HRS, hepatocyte growth 24.7 44 0.0015 28.9 3.0 33 41-73 158-193 (220)
225 2jxx_A Nfatc2-interacting prot 24.4 1.2E+02 0.0042 22.9 5.1 48 242-302 39-86 (97)
226 2k16_A Transcription initiatio 24.4 22 0.00076 25.3 0.8 49 43-91 17-70 (75)
227 1b8t_A Protein (CRP1); LIM dom 24.0 35 0.0012 28.6 2.2 42 35-77 24-67 (192)
228 2dzj_A Synaptic glycoprotein S 23.6 52 0.0018 24.2 2.8 47 244-301 27-75 (88)
229 1wff_A Riken cDNA 2810002D23 p 23.4 32 0.0011 25.8 1.5 41 44-89 25-67 (85)
230 1wjn_A Tubulin-folding protein 22.8 81 0.0028 23.3 3.8 51 244-301 27-79 (97)
231 1wd2_A Ariadne-1 protein homol 22.5 8.2 0.00028 26.9 -1.8 32 45-76 7-45 (60)
232 1h4r_A Merlin; FERM, neurofibr 22.3 1.2E+02 0.0042 27.1 5.7 65 244-319 36-100 (314)
233 2l4z_A DNA endonuclease RBBP8, 22.0 55 0.0019 25.6 2.8 38 44-91 61-99 (123)
234 3goe_A DNA repair protein RAD6 22.0 1.2E+02 0.0039 22.6 4.3 47 242-301 22-69 (82)
235 3zyq_A Hepatocyte growth facto 21.7 58 0.002 28.4 3.1 31 43-73 163-196 (226)
236 2ee8_A Protein ODD-skipped-rel 21.5 1.4E+02 0.0047 21.3 4.9 16 42-57 15-30 (106)
237 3mpx_A FYVE, rhogef and PH dom 21.2 20 0.00069 33.9 0.0 32 44-75 375-409 (434)
238 2fiy_A Protein FDHE homolog; F 21.1 9.6 0.00033 35.4 -2.2 47 42-89 180-231 (309)
239 3tix_A Ubiquitin-like protein 21.1 67 0.0023 28.0 3.3 48 242-302 69-116 (207)
240 2d8v_A Zinc finger FYVE domain 20.6 40 0.0014 24.1 1.5 32 43-76 7-39 (67)
No 1
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=100.00 E-value=2.3e-34 Score=226.88 Aligned_cols=81 Identities=40% Similarity=0.719 Sum_probs=73.2
Q ss_pred CCCCCCeEEcCCCCCcchhhhHHHHHHHHhccCC------------CCcCCcceEEEeecCCCceeeCCCCchHHHHHHh
Q psy17011 237 TSETDDKISTVESATDGEVDHLTKYLTMRLRLEG------------SDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDK 304 (321)
Q Consensus 237 ~~~~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~------------~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~ 304 (321)
...++|||||+++ ||||||+||||||++|+. ..+++.||+|||++++|||++|+|++||++|++|
T Consensus 19 ~~~~~RYIKTt~n---ATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~L~gs~tLe~VneK 95 (111)
T 3gs2_A 19 DSAQTRYIKTSGN---ATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVLDGSFSLELVSEK 95 (111)
T ss_dssp TTCCCEEEEEETT---CBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEECCTTSBHHHHHHH
T ss_pred chhceEEEEcCCC---ccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEEccCcccHHHHhhh
Confidence 3367899999999 999999999999999983 1234579999999999999999999999999999
Q ss_pred hcCCCCCeEEEeeecc
Q psy17011 305 YWKSEKPLEVYYSWKK 320 (321)
Q Consensus 305 ~Wk~~~Pl~l~Y~~~~ 320 (321)
|||+++||+|||+|+|
T Consensus 96 ywkvnkplelYYa~~k 111 (111)
T 3gs2_A 96 YWKVNKPMELYYAPTK 111 (111)
T ss_dssp HTCSSSCEEEEEEECC
T ss_pred hccCCCCeeEEecccC
Confidence 9999999999999987
No 2
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.90 E-value=6.8e-25 Score=189.56 Aligned_cols=150 Identities=79% Similarity=1.239 Sum_probs=90.8
Q ss_pred CCCCCCccccceeeeccCCcccccCccccccCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCC
Q psy17011 6 QSGTTKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPT 85 (321)
Q Consensus 6 ~~~~~~~~~~~~~e~~~~~~~~i~~~~~~~~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~ 85 (321)
++..+.+|+++.|++++.+++++.++....+....+.+++.|+||+++|.+|+++.+|||+||..||..|+..+...||.
T Consensus 16 ~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 95 (165)
T 2ckl_B 16 TQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPT 95 (165)
T ss_dssp -----CCCCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTT
T ss_pred cCCCCccccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCC
Confidence 34458999999999999999999999999999999999999999999999999984499999999999999976789999
Q ss_pred ccccccccccCCCChHHHHHHHHHcCChHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHhh
Q psy17011 86 CRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNKSHSQAALVQSINEGIKLQSQHRLQRT 155 (321)
Q Consensus 86 Cr~~~~~~~~l~~n~~l~~lv~kl~~~~~~c~~h~e~l~~~~~~~~~~~~l~~~~~e~~k~q~q~r~~~l 155 (321)
||..+.....+++|..+.++|.+++++..+|+.|+++++..+.+.+.+.++..++.++++.|.++|.+++
T Consensus 96 Cr~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~s~~~~~~~q~~~r~~~~ 165 (165)
T 2ckl_B 96 CRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRG 165 (165)
T ss_dssp TCCBCCSGGGEEECHHHHHHHHHHC---------------------------------------------
T ss_pred CCCcCCCcccCCcCHHHHHHHHHHHcchhHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhhhhcC
Confidence 9999977788999999999999999999999999999999999988888899999999999998887763
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.59 E-value=6.5e-16 Score=116.63 Aligned_cols=69 Identities=22% Similarity=0.419 Sum_probs=62.6
Q ss_pred CCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 40 SLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 40 ~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
.+.+++.|+||+++|.+|++++ |||+||+.||.+|+..+...||.||..+. ...+.+|..++++|..+.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~-~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLL-HAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCS-SCCCEECTTTHHHHHHHH
T ss_pred CCcccCCCCCccccccCCEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCC-hhhCccCHHHHHHHHHHH
Confidence 4678999999999999999998 99999999999999866789999999997 567889999999998874
No 4
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.59 E-value=5.9e-16 Score=127.27 Aligned_cols=75 Identities=21% Similarity=0.619 Sum_probs=67.5
Q ss_pred ccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHcCCh
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSR 113 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~~~~ 113 (321)
...+.+++.|+||+++|.+|++++ |||+||..||..|+..+...||.||..+.....+++|..+.+++.+++|+.
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred HHhCccCCCCCcCChHHcCcEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 455678899999999999999998 999999999999998656699999999986578999999999999999854
No 5
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=118.21 Aligned_cols=74 Identities=28% Similarity=0.612 Sum_probs=65.0
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhc-CCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS-GNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~-~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
....+.+++.|+||+++|.+|++++.|||+||..||..|+.. +...||.||..+.....+.+|..+.+++.++.
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 80 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFK 80 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHH
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHH
Confidence 445678899999999999999999779999999999999974 34799999999865778999999999998874
No 6
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.58 E-value=1.6e-15 Score=117.19 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=65.0
Q ss_pred cCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 36 VSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 36 ~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
.....+.+++.||||+++|.+||+++ |||+||+.||..|+.. ...||.|+.++. ...+.+|..|+++|..+.
T Consensus 6 ~~~~~~p~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~-~~~cP~~~~~l~-~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 6 IDYSDAPDEFRDPLMDTLMTDPVRLP-SGTVMDRSIILRHLLN-SPTDPFNRQMLT-ESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CCCTTCCTTTBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHH-CSBCTTTCCBCC-GGGCEECHHHHHHHHHHH
T ss_pred hhhhcCchheECcccCchhcCCeECC-CCCEECHHHHHHHHhc-CCCCCCCcCCCC-hHhcchHHHHHHHHHHHH
Confidence 34556788999999999999999999 9999999999999985 679999999997 568999999999999884
No 7
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.58 E-value=2.5e-15 Score=119.73 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=65.4
Q ss_pred cCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 36 VSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 36 ~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
.....+.+++.||||+++|.+||+++ |||+||+.||..||.. ...||.|+.++. ...+.+|..|.++|..+.
T Consensus 21 ~~~~~~p~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~-~~~cP~~~~~l~-~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 21 IDYSDAPDEFRDPLMDTLMTDPVRLP-SGTIMDRSIILRHLLN-SPTDPFNRQTLT-ESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSCSSCSTTTBCTTTCSBCSSEEEET-TTEEEEHHHHHHHTTS-CSBCSSSCCBCC-TTSSEECHHHHHHHHHHH
T ss_pred hhhccCcHhhCCcCccCcccCCeECC-CCCEEchHHHHHHHHc-CCCCCCCCCCCC-hhhceECHHHHHHHHHHH
Confidence 45566788999999999999999999 9999999999999984 789999999997 578999999999999885
No 8
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.56 E-value=3.1e-15 Score=120.01 Aligned_cols=87 Identities=29% Similarity=0.601 Sum_probs=71.6
Q ss_pred cCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccccc---ccCCCChHHHHHHHHHcCC
Q psy17011 36 VSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSK---RSLRADPNFDLLISKIYPS 112 (321)
Q Consensus 36 ~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~---~~l~~n~~l~~lv~kl~~~ 112 (321)
+....+.+++.|+||++++.+|+++.+|||+||..||..|+.. ...||.||..+... ..+.+|..+.+++.+++++
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~ 85 (108)
T 2ckl_A 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG 85 (108)
T ss_dssp EEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred cchhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence 3455678899999999999999998339999999999999985 58999999998743 2678999999999999987
Q ss_pred hHHHHHHHHHH
Q psy17011 113 RDEYEAHQVRV 123 (321)
Q Consensus 113 ~~~c~~h~e~l 123 (321)
...-+..+++.
T Consensus 86 ~~~~e~~~~~~ 96 (108)
T 2ckl_A 86 LFKNEMKRRRD 96 (108)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhHHH
Confidence 76555444443
No 9
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.54 E-value=7.3e-15 Score=116.64 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=64.2
Q ss_pred CccCCCCcccccccccCcccceecCCCC-CcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECL-HRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~Cg-HtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
....+.++|.||||+++|.+||+++ || |+||+.||.+||.. ...||+|+.++. ...+.+|..|+++|..+.
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~-cG~htf~r~cI~~~l~~-~~~cP~~~~~l~-~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLP-SSRVTVDRSTIARHLLS-DQTDPFNRSPLT-MDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECT-TTCCEEEHHHHHHHTTT-SCBCTTTCSBCC-TTTSEECHHHHHHHHHHH
T ss_pred hhhcCcHhcCCcCccccccCCeECC-CCCeEECHHHHHHHHHh-CCCCCCCCCCCC-hhhceEcHHHHHHHHHHH
Confidence 4556778999999999999999999 99 99999999999985 679999999997 578999999999998874
No 10
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.52 E-value=4.9e-15 Score=126.29 Aligned_cols=76 Identities=24% Similarity=0.635 Sum_probs=67.0
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHcCCh
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSR 113 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~~~~ 113 (321)
.+..+.+++.|+||+++|.+|++++ |||+||..||..|+..+...||+||..+.....+.+|..+.+++..++++.
T Consensus 71 ~~~~l~~~~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~~ 146 (150)
T 1z6u_A 71 FLKKLEQSFMCVCCQELVYQPVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGY 146 (150)
T ss_dssp HHHHHHHHTBCTTTSSBCSSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTTT
T ss_pred HHHhCccCCEeecCChhhcCCEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhHh
Confidence 3445667899999999999999998 999999999999998756689999999985558999999999999998753
No 11
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.50 E-value=3.2e-15 Score=118.68 Aligned_cols=77 Identities=23% Similarity=0.418 Sum_probs=63.5
Q ss_pred ccccccCccCCCCcccccccccCccccee-cCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHH
Q psy17011 31 NTEIAVSPRSLHSELMCPICLDMLKKTMT-TKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKI 109 (321)
Q Consensus 31 ~~~~~~~~~~l~~~l~C~IC~~~l~~Pvt-l~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl 109 (321)
..........+.+++.|+||+++|.+|+. ++ |||+||..||.+|+......||.||..+. ...+..+..+.+++..+
T Consensus 9 ~~~~~~~~~~l~~~~~C~IC~~~~~~p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 9 SHMDEQSVESIAEVFRCFICMEKLRDARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQ-LRELVNCRWAEEVTQQL 86 (100)
T ss_dssp -CHHHHHHHHHHHHTBCTTTCSBCSSEEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCC-GGGCEECTTHHHHHHHH
T ss_pred CCCcccccccCCCCCCCccCCccccCccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCC-HHHhHhhHHHHHHHHHH
Confidence 33344556678899999999999999999 77 99999999999999975579999999997 56777788777776655
No 12
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=3.3e-14 Score=111.78 Aligned_cols=70 Identities=29% Similarity=0.494 Sum_probs=60.8
Q ss_pred CCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcC-----CCCCCC--cccc-ccccccCCCChHHHHHHHHHc
Q psy17011 40 SLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSG-----NKECPT--CRKK-LVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 40 ~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~-----~~~CP~--Cr~~-~~~~~~l~~n~~l~~lv~kl~ 110 (321)
...++|.||||+++|.+||+++.|||+||+.||..||..+ ...||+ |+.. +. ...+.+|..|.++|..+.
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~-~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR-KSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC-GGGEEECHHHHHHHHHHH
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC-HhhCcCCHHHHHHHHHHH
Confidence 4567899999999999999995599999999999999853 458999 9877 54 678999999999998885
No 13
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.46 E-value=2.1e-14 Score=113.30 Aligned_cols=72 Identities=26% Similarity=0.624 Sum_probs=62.8
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
....+.+++.|+||++.+.+|+.+.+|||+||..||..|+.. ...||.||..+. ...+.+|..+.+++..+.
T Consensus 15 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVT-EPDLKNNRILDELVKSLN 86 (99)
T ss_dssp GGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCC-GGGCEECHHHHHHHHHHH
T ss_pred HHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCC-hhhCCcCHHHHHHHHHHH
Confidence 455567889999999999999998449999999999999984 679999999997 577889999999998873
No 14
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.44 E-value=1.6e-14 Score=116.98 Aligned_cols=73 Identities=29% Similarity=0.645 Sum_probs=63.2
Q ss_pred ccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccc------cccCCCChHHHHHHHHHcC
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS------KRSLRADPNFDLLISKIYP 111 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~------~~~l~~n~~l~~lv~kl~~ 111 (321)
...+.+++.|+||++++.+|++++ |||+||..||..|+..+...||.||..+.. ..++.+|..+..++.++++
T Consensus 9 ~~~~~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 9 AIPSLSECQCGICMEILVEPVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCCCHHHHBCTTTCSBCSSCEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred ccCCCCCCCCccCCcccCceeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 344567899999999999999998 999999999999998667899999999863 3577788999999988875
No 15
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.44 E-value=7.9e-14 Score=128.05 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=63.8
Q ss_pred cCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHcC
Q psy17011 39 RSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYP 111 (321)
Q Consensus 39 ~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~~ 111 (321)
..+.+++.||||+++|.+||+++ |||+||+.||.+|+..+...||+|+.++. ...+.+|..+.++|..+..
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~-~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLT-QEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCC-GGGCEECHHHHHHHHHHHT
T ss_pred CCCCcccCCcCcCCHhcCCeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCc-hhcCcccHHHHHHHHHHHH
Confidence 45668999999999999999999 99999999999999875556999999997 6789999999999998864
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.43 E-value=6e-15 Score=111.20 Aligned_cols=67 Identities=27% Similarity=0.711 Sum_probs=56.3
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcC------CCCCCCccccccccccCCCChHHHHH
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSG------NKECPTCRKKLVSKRSLRADPNFDLL 105 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~------~~~CP~Cr~~~~~~~~l~~n~~l~~l 105 (321)
..+.+.+++.|+||++.+.+|+.++ |||+||..||.+|+... ...||.||..+. ...+++|..+.++
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~-~~~l~~n~~l~~l 77 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS-FEHLQANQHLANI 77 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC-SSGGGTCSSSCCC
T ss_pred hHhhcccCCCCcCCCcccCCeeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC-HhhCCcCHHHHHh
Confidence 4567888999999999999999998 99999999999998752 568999999997 4567777665543
No 17
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.42 E-value=1.2e-13 Score=120.87 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=64.2
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
....+.++|.||||+++|.+||+++ |||+||+.||..|+..+...||+|+.++. ...+.+|..|.++|..+.
T Consensus 99 ~~~~ip~~f~CPI~~elm~DPV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~-~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 99 KKREIPDYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLT-QDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp GCCCCCGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCC-GGGCEECHHHHHHHHHHH
T ss_pred cccCCcHhhcccCccccCCCCeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCC-hhhCcchHHHHHHHHHHH
Confidence 3466789999999999999999998 99999999999999864447999999997 568999999999999874
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=102.44 Aligned_cols=63 Identities=32% Similarity=0.701 Sum_probs=52.2
Q ss_pred ccCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcC-CCCCCCccccccccccCC
Q psy17011 35 AVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSG-NKECPTCRKKLVSKRSLR 97 (321)
Q Consensus 35 ~~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~-~~~CP~Cr~~~~~~~~l~ 97 (321)
......+.+++.|+||+++|.+|++++.|||+||..||..|+... ...||+||..+...+.+.
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2yur_A 6 SGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALS 69 (74)
T ss_dssp CSCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTT
T ss_pred ccccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccc
Confidence 345667889999999999999999988799999999999999853 368999999876444433
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.41 E-value=1.2e-13 Score=115.63 Aligned_cols=67 Identities=37% Similarity=0.710 Sum_probs=54.6
Q ss_pred CCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHcCC
Q psy17011 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPS 112 (321)
Q Consensus 41 l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~~~ 112 (321)
+.++++|+||++.+.+|++++ |||+||..||..|+.. ...||.||.++... ..+..+..++.+++..
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~~-CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~---~~~~~~~~~i~~~~~~ 116 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTLN-CAHSFCSYCINEWMKR-KIECPICRKDIKSK---TYSLVLDNCINKMVNN 116 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEET-TSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE---EECHHHHHHHHHHHTT
T ss_pred ccccCCCcccCcccCCceECC-CCCCccHHHHHHHHHc-CCcCCCCCCcCCCC---CCccchhHHHHHHHHH
Confidence 456789999999999999999 9999999999999985 67899999998632 2355666667666543
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=4.3e-14 Score=107.38 Aligned_cols=67 Identities=30% Similarity=0.724 Sum_probs=56.0
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcC-----CCCCCCccccccccccCCCChHHHHH
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSG-----NKECPTCRKKLVSKRSLRADPNFDLL 105 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~-----~~~CP~Cr~~~~~~~~l~~n~~l~~l 105 (321)
....+.+++.|+||++.+.+|+.++ |||+||..||..|+... ...||.||..+. ...+.+|..++++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~-~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP-FGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC-TTCCEECSCCCSS
T ss_pred HHHhCccCCCCcCCChhhCcceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC-HHhCCcCHHHHHh
Confidence 4566788999999999999999998 99999999999999862 678999999987 4566666655443
No 21
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.39 E-value=8.3e-14 Score=117.53 Aligned_cols=76 Identities=22% Similarity=0.543 Sum_probs=61.8
Q ss_pred ccCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccc--------cccCCCChHHHHHH
Q psy17011 35 AVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS--------KRSLRADPNFDLLI 106 (321)
Q Consensus 35 ~~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~--------~~~l~~n~~l~~lv 106 (321)
......+.+++.|+||+++|.+|++++ |||+||+.||.+|+..+...||+||..+.. ...+.++..+...|
T Consensus 22 ~~~~~~l~~~~~C~IC~~~~~~pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i 100 (141)
T 3knv_A 22 TLLGTKLEAKYLCSACRNVLRRPFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREV 100 (141)
T ss_dssp GGTGGGCCGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHH
T ss_pred hhhhccCCcCcCCCCCChhhcCcEECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHH
Confidence 344467889999999999999999998 999999999999998766699999997531 23455778888888
Q ss_pred HHHcC
Q psy17011 107 SKIYP 111 (321)
Q Consensus 107 ~kl~~ 111 (321)
..+..
T Consensus 101 ~~L~v 105 (141)
T 3knv_A 101 ESLPA 105 (141)
T ss_dssp HTSEE
T ss_pred ccccc
Confidence 77653
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=6.2e-14 Score=106.52 Aligned_cols=67 Identities=27% Similarity=0.756 Sum_probs=56.3
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhc-----CCCCCCCccccccccccCCCChHHHHH
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS-----GNKECPTCRKKLVSKRSLRADPNFDLL 105 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~-----~~~~CP~Cr~~~~~~~~l~~n~~l~~l 105 (321)
....+.+.+.|+||++.+.+|+.++ |||+||..||..|+.. +...||.||..+. ...+.+|..++++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~-~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ-PENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC-SSSCCCSCCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC-HHhcCccHHHHHh
Confidence 4466778999999999999999998 9999999999999875 3678999999997 5667777665543
No 23
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.38 E-value=4.3e-14 Score=115.09 Aligned_cols=71 Identities=24% Similarity=0.570 Sum_probs=62.0
Q ss_pred ccCccCCCCcccccccccCcccceec-CCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 35 AVSPRSLHSELMCPICLDMLKKTMTT-KECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 35 ~~~~~~l~~~l~C~IC~~~l~~Pvtl-~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
...+..+.+++.|+||+++|.+|+++ + |||+||..||..|+. ..||+||..+. ...+.+|..+.+++..+.
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~pv~~~~-CgH~fC~~Ci~~~~~---~~CP~Cr~~~~-~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 13 RAALDRLEKLLRCSRCTNILREPVCLGG-CEHIFCSNCVSDCIG---TGCPVCYTPAW-IQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp HHHHHHHHHTTSCSSSCSCCSSCBCCCS-SSCCBCTTTGGGGTT---TBCSSSCCBCS-CSSCCCCHHHHHHHHHHH
T ss_pred HHHHHhchhCCCCCCCChHhhCccEeCC-CCCHHHHHHHHHHhc---CCCcCCCCcCc-cccccccHHHHHHHHHHH
Confidence 33456677899999999999999999 6 999999999999986 68999999996 678899999999988763
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3e-13 Score=102.73 Aligned_cols=63 Identities=21% Similarity=0.508 Sum_probs=52.6
Q ss_pred ccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHH
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDL 104 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~ 104 (321)
.......+.|+||++.+.+|+.++ |||+||..||..|+.. ...||+||..+. ..+.++..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~--~~~~~~~~l~~ 71 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTK-CRHYFCESCALEHFRA-TPRCYICDQPTG--GIFNPAKELMA 71 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECT-TSCEEEHHHHHHHHHH-CSBCSSSCCBCC--SCCEECHHHHH
T ss_pred cccCCCCCCCcCCCchhcCeeEcc-CCCHhHHHHHHHHHHC-CCcCCCcCcccc--ccCCcHHHHHH
Confidence 345667899999999999999998 9999999999999985 678999999985 55666654433
No 25
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.37 E-value=2.7e-13 Score=110.53 Aligned_cols=73 Identities=33% Similarity=0.625 Sum_probs=62.9
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHcC
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYP 111 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~~ 111 (321)
....+.+++.|+||++++.+|+.++ |||+||..||..|+..+...||.||..+. ...+.++..+..++..+..
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~l~~~i~~l~v 83 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILL-ENQLFPDNFAKREILSLMV 83 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCC-GGGCEECHHHHHHHHTSEE
T ss_pred hccCCCCCCCCCcCChhhcCeEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcC-HHhcccCHHHHHHHcccee
Confidence 3557889999999999999999998 99999999999999865569999999997 4567788888888877653
No 26
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.37 E-value=3.3e-13 Score=124.07 Aligned_cols=72 Identities=25% Similarity=0.479 Sum_probs=62.2
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhc-CCCCCCC--ccccccccccCCCChHHHHHHHHH
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS-GNKECPT--CRKKLVSKRSLRADPNFDLLISKI 109 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~-~~~~CP~--Cr~~~~~~~~l~~n~~l~~lv~kl 109 (321)
.+.....+++||||+++|.+||+...|||+||+.||..||.. +...||+ |++.+. ..++++|..|.+++..+
T Consensus 174 ~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~-~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS-MRDFVRDPIMELRCKIA 248 (267)
T ss_dssp CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC-GGGEEECHHHHHHHHHH
T ss_pred eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc-hhhCCcCHHHHHHHHHH
Confidence 345577899999999999999997339999999999999985 3468999 999886 77899999999988765
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.3e-13 Score=97.48 Aligned_cols=54 Identities=28% Similarity=0.692 Sum_probs=48.2
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
....+.+++.|+||++.+.+|+.++ |||+||..||.+|+..+...||+||..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTE-CGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred hhhcCCcCCCCCCCChHhcCeeECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 3456778999999999999999998 99999999999999655678999999986
No 28
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7.1e-13 Score=98.53 Aligned_cols=56 Identities=30% Similarity=0.726 Sum_probs=49.5
Q ss_pred ccCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 35 AVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 35 ~~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
......+.+++.|+||++.+.+|+++.+|||+||..||..|+.. ...||+||..+.
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 61 (72)
T 2djb_A 6 SGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVH 61 (72)
T ss_dssp CCCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred hhhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccC
Confidence 34566788899999999999999998449999999999999986 678999999987
No 29
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.36 E-value=3.4e-13 Score=109.28 Aligned_cols=73 Identities=25% Similarity=0.557 Sum_probs=61.4
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
....+.+++.|+||++++.+|+.++ |||+||..||.+|+..+...||.||..+.......++..+..++..+.
T Consensus 16 ~~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~ 88 (116)
T 1rmd_A 16 FPAHFVKSISCQICEHILADPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLM 88 (116)
T ss_dssp CCHHHHHHTBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCE
T ss_pred hHHhccCCCCCCCCCcHhcCcEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhc
Confidence 3455677899999999999999998 999999999999998756789999999985444556778888877765
No 30
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=9.3e-13 Score=97.67 Aligned_cols=54 Identities=39% Similarity=0.882 Sum_probs=47.9
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhc--CCCCCCCcccccc
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS--GNKECPTCRKKLV 91 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~--~~~~CP~Cr~~~~ 91 (321)
....+.+++.|+||++.+.+|+.++ |||+||..||..|+.. +...||+||..+.
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 4566788999999999999999997 9999999999999972 4568999999986
No 31
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=2.1e-13 Score=109.33 Aligned_cols=70 Identities=34% Similarity=0.857 Sum_probs=58.2
Q ss_pred cCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcC--CCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 39 RSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSG--NKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 39 ~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~--~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
..+.+.+.|+||++.+.+|+.++ |||+||..||..|+... ...||.||..+. ...+.++..+.+++..+.
T Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT-KRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSCCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC-TTTCBCCCSSSHHHHHHH
T ss_pred HhccCCCCCcccChhhcCeEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC-HhhcCccHHHHHHHHHHH
Confidence 44567889999999999999998 99999999999999852 258999999987 567777777777776663
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.1e-12 Score=93.28 Aligned_cols=50 Identities=42% Similarity=0.925 Sum_probs=44.2
Q ss_pred cCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhc--CCCCCCCc
Q psy17011 36 VSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS--GNKECPTC 86 (321)
Q Consensus 36 ~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~--~~~~CP~C 86 (321)
.....+.+++.|+||++.+.+|+.++ |||+||..||.+|+.. +...||+|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSCEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCCeEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34566788999999999999999998 9999999999999984 45689998
No 33
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.26 E-value=2.2e-12 Score=111.34 Aligned_cols=72 Identities=33% Similarity=0.647 Sum_probs=61.9
Q ss_pred ccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHcC
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYP 111 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~~ 111 (321)
+..+.+++.|+||+++|.+|++++ |||+||+.||.+|+..+...||.||..+. ...+.++..+..+|..+..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~~~~~i~~l~v 83 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILL-ENQLFPDNFAKREILSLMV 83 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCC-GGGCEECHHHHHHHHTSEE
T ss_pred ccCCCCCCCCCCCChhhcCcEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcc-hhhhhhhHHHHHHHhhccc
Confidence 456889999999999999999998 99999999999999865569999999997 4556678888888877653
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=2.7e-12 Score=93.37 Aligned_cols=53 Identities=26% Similarity=0.671 Sum_probs=44.8
Q ss_pred Cccccccccc-Ccccce----ecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCC
Q psy17011 43 SELMCPICLD-MLKKTM----TTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLR 97 (321)
Q Consensus 43 ~~l~C~IC~~-~l~~Pv----tl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~ 97 (321)
+++.|+||++ ++.+|+ .++ |||+||..||.+|+..+...||.||..+. ..+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLR-KSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCS-SCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccc-cccce
Confidence 4789999999 999994 567 99999999999998766678999999987 44443
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.7e-12 Score=88.74 Aligned_cols=50 Identities=32% Similarity=0.774 Sum_probs=43.8
Q ss_pred cCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhc--CCCCCCCc
Q psy17011 36 VSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS--GNKECPTC 86 (321)
Q Consensus 36 ~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~--~~~~CP~C 86 (321)
...+.+.+.+.|+||++.+.+|+.++ |||+||..||.+|+.. ....||+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 7 GALENLQVEASCSVCLEYLKEPVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSSCSCCCCBCSSSCCBCSSCCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hHhhccccCCCCccCCcccCccEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34566778999999999999999998 9999999999999764 56789998
No 36
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=8.1e-12 Score=95.64 Aligned_cols=56 Identities=29% Similarity=0.646 Sum_probs=49.2
Q ss_pred ccCccCCCCcccccccccCccc----ceecCCCCCcccHhHHHHHHhcC--CCCCCCcccccc
Q psy17011 35 AVSPRSLHSELMCPICLDMLKK----TMTTKECLHRFCSDCIITALRSG--NKECPTCRKKLV 91 (321)
Q Consensus 35 ~~~~~~l~~~l~C~IC~~~l~~----Pvtl~~CgHtFC~~CI~~~l~~~--~~~CP~Cr~~~~ 91 (321)
......+.+.+.|+||++.+.+ |+.++ |||+||..||.+|+... ...||.||..+.
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 6 SGNLDALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCSCCCCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred ccChhhccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3456678889999999999999 99998 99999999999999863 478999999886
No 37
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=4.3e-12 Score=93.99 Aligned_cols=50 Identities=28% Similarity=0.603 Sum_probs=45.2
Q ss_pred CCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 40 SLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 40 ~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
...+.+.|+||++.+.+|+.++ |||.||..||..|+.. ...||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLP-CKHVFCYLCVKGASWL-GKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEET-TTEEEEHHHHHHCTTC-SSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCCCEEcc-CCCHHHHHHHHHHHHC-CCcCcCcCchhC
Confidence 3456889999999999999998 9999999999999985 579999999986
No 38
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.8e-12 Score=91.01 Aligned_cols=53 Identities=38% Similarity=0.882 Sum_probs=46.9
Q ss_pred CccCCCCcccccccccCcccc-------eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 37 SPRSLHSELMCPICLDMLKKT-------MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~P-------vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
....+.+.+.|+||++.+.+| +.++ |||.||..||..|+.. ...||+||..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 455677899999999999998 7778 9999999999999986 678999999875
No 39
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.20 E-value=8.4e-12 Score=91.83 Aligned_cols=50 Identities=40% Similarity=0.950 Sum_probs=44.7
Q ss_pred CCCCcccccccccCcccc-------eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 40 SLHSELMCPICLDMLKKT-------MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 40 ~l~~~l~C~IC~~~l~~P-------vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
...+++.|+||++.+.+| +.++ |||.||..||.+|+.. ...||.||..+.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKN-ANTCPTCRKKIN 62 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHc-CCCCCCCCCccC
Confidence 345789999999999998 7777 9999999999999986 579999999987
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.12 E-value=6.1e-11 Score=90.13 Aligned_cols=56 Identities=27% Similarity=0.583 Sum_probs=44.5
Q ss_pred CccCCCCcccccccccCcc--cceecC-CCCCcccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 37 SPRSLHSELMCPICLDMLK--KTMTTK-ECLHRFCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~--~Pvtl~-~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
....+.+++.||||++.+. ++...+ +|||+||+.|+.+++..+...||.||+.+..
T Consensus 4 ~~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 4 SPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CSCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3455788999999999774 333322 3999999999999987667899999999873
No 41
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.10 E-value=2.7e-11 Score=87.11 Aligned_cols=47 Identities=43% Similarity=1.021 Sum_probs=42.7
Q ss_pred CcccccccccCcccc-------eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKKT-------MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~P-------vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+++.|+||++.+.+| +.++ |||.||..||.+|+.. ...||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKN-ANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHH-CSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHc-CCCCCCCCccCC
Confidence 578999999999988 7777 9999999999999986 679999999986
No 42
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.10 E-value=6.2e-11 Score=89.02 Aligned_cols=54 Identities=31% Similarity=0.696 Sum_probs=45.1
Q ss_pred CccCCCCcccccccccCcccc---eecCCCCCcccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 37 SPRSLHSELMCPICLDMLKKT---MTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~P---vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
....+...+.|+||++.|.++ +.++ |||.||..||.+|+.. ...||+||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQ-HDSCPVCRKSLTG 64 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTT-TCSCTTTCCCCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHc-CCcCcCcCCccCC
Confidence 344566789999999999876 3456 9999999999999985 5799999999873
No 43
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=9.9e-11 Score=87.01 Aligned_cols=54 Identities=28% Similarity=0.656 Sum_probs=46.0
Q ss_pred CccCCCCcccccccccCcccceec---CCCCCcccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTT---KECLHRFCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl---~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
....+..+..|+||++.+.++..+ + |||.||..||.+|+.. ...||+||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 8 KVKELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred ccccCCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 445677889999999999877555 7 9999999999999986 5689999999864
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=4e-11 Score=88.19 Aligned_cols=53 Identities=30% Similarity=0.706 Sum_probs=46.8
Q ss_pred CccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 37 ~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
.+..+.+.+.|+||++.+.+ +.++ |||.||..||.+|+. ....||+||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~-~~~~-CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 8 RVKQLTDEEECCICMDGRAD-LILP-CAHSFCQKCIDKWSD-RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCCCSSSCCSCCS-EEET-TTEEECHHHHHHSSC-CCSSCHHHHHCTTC
T ss_pred hhhcCCCCCCCeeCCcCccC-cccC-CCCcccHHHHHHHHH-CcCcCCCcCCcccC
Confidence 44567789999999999999 8888 999999999999998 47899999999874
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.06 E-value=8.7e-11 Score=82.22 Aligned_cols=50 Identities=30% Similarity=0.690 Sum_probs=43.3
Q ss_pred CCCcccccccccCccc---ceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 41 LHSELMCPICLDMLKK---TMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 41 l~~~l~C~IC~~~l~~---Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+.++..|+||++.+.+ ++.++.|||.||..||.+|+.. ...||.||..+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 5678899999999987 6777569999999999999985 678999998763
No 46
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=5.5e-11 Score=84.31 Aligned_cols=45 Identities=29% Similarity=0.657 Sum_probs=40.5
Q ss_pred CCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 42 HSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.++++|+||++.+.+|+.++ |||+||..||.. ....||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~----~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLP-CLHTLCSGCLEA----SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCST-TSCCSBTTTCSS----SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcC-CCCcccHHHHcc----CCCCCCcCCcEee
Confidence 46899999999999999999 999999999976 3568999999886
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.01 E-value=1.5e-10 Score=84.50 Aligned_cols=47 Identities=38% Similarity=0.841 Sum_probs=41.7
Q ss_pred CcccccccccCcccc-eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKKT-MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~P-vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
....|+||++.+.+| +.++ |||.||..||.+|+.. ...||.||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALP-CLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETT-TTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecC-CCCeeHHHHHHHHHhC-cCcCcCCChhhH
Confidence 567899999999997 5666 9999999999999985 579999999886
No 48
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.01 E-value=1.7e-10 Score=80.56 Aligned_cols=47 Identities=26% Similarity=0.588 Sum_probs=40.9
Q ss_pred CcccccccccCccc----ceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKK----TMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~----Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
++..|+||++.+.+ ++.++ |||.||..||.+|+.. ...||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 46789999999876 66777 9999999999999997 488999998774
No 49
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=3.3e-10 Score=82.98 Aligned_cols=51 Identities=33% Similarity=0.709 Sum_probs=42.7
Q ss_pred cCCCCcccccccccCcc---cceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 39 RSLHSELMCPICLDMLK---KTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 39 ~~l~~~l~C~IC~~~l~---~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.....+..|+||++.+. .++.++ |||.||..||..|+.. ...||+||..+.
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLIT-NKKCPICRVDIE 62 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHH-CSBCTTTCSBSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHc-CCCCcCcCcccc
Confidence 34456789999999885 456677 9999999999999986 568999999886
No 50
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=4e-10 Score=84.09 Aligned_cols=49 Identities=24% Similarity=0.647 Sum_probs=43.2
Q ss_pred CCCcccccccccCcccc---eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 41 LHSELMCPICLDMLKKT---MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 41 l~~~l~C~IC~~~l~~P---vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
..+...|+||++.+..+ +.++ |||.||..||.+|+.. ...||+||..+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKA-NRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHH-CSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHc-CCcCcCcCCcCC
Confidence 45678999999999887 6777 9999999999999986 578999999886
No 51
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.97 E-value=2.7e-10 Score=88.51 Aligned_cols=50 Identities=30% Similarity=0.683 Sum_probs=43.9
Q ss_pred CCCCcccccccccCccc---ceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 40 SLHSELMCPICLDMLKK---TMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 40 ~l~~~l~C~IC~~~l~~---Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
....+..|+||++.+.. ++.++ |||.||..||..|+.. ...||+||..+.
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQK-SGTCPVCRCMFP 88 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTT-TCBCTTTCCBSS
T ss_pred ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHc-CCcCcCcCccCC
Confidence 34578899999999887 77888 9999999999999985 679999999885
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.96 E-value=4.2e-10 Score=90.45 Aligned_cols=52 Identities=31% Similarity=0.657 Sum_probs=42.2
Q ss_pred CcccccccccCcccce------------------ecCCCCCcccHhHHHHHHhc----CCCCCCCcccccccccc
Q psy17011 43 SELMCPICLDMLKKTM------------------TTKECLHRFCSDCIITALRS----GNKECPTCRKKLVSKRS 95 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pv------------------tl~~CgHtFC~~CI~~~l~~----~~~~CP~Cr~~~~~~~~ 95 (321)
.+..|+||++.|.+|. .++ |||.||..||..|+.. ....||+||..+.....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 3569999999997765 556 9999999999999952 35689999999875443
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.94 E-value=3e-10 Score=92.84 Aligned_cols=49 Identities=41% Similarity=0.985 Sum_probs=44.4
Q ss_pred CCcccccccccCcccc-------eecCCCCCcccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 42 HSELMCPICLDMLKKT-------MTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~P-------vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
.+++.|+||++.|.+| +.++ |||+||..||.+|+.. ...||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 4689999999999999 8888 9999999999999985 5699999999873
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.89 E-value=1.7e-10 Score=86.42 Aligned_cols=48 Identities=29% Similarity=0.679 Sum_probs=42.8
Q ss_pred ccCCCCcccccccccCcccceecCCCCCc-ccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTTKECLHR-FCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl~~CgHt-FC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.+.+.+++.|+||++.+.+|+.++ |||. ||..|+..| ..||+||..+.
T Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~-----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 18 LRRLQEEKLCKICMDRNIAIVFVP-CGHLVTCKQCAEAV-----DKCPMCYTVIT 66 (74)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEEET-TCCBCCCHHHHTTC-----SBCTTTCCBCS
T ss_pred HhcCccCCCCCCCCCCCCCEEEcC-CCChhHHHHhhhcC-----ccCCCcCcCcc
Confidence 445667899999999999999999 9999 999999866 68999999886
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.80 E-value=2.3e-09 Score=103.93 Aligned_cols=51 Identities=25% Similarity=0.610 Sum_probs=45.2
Q ss_pred CCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccccc
Q psy17011 42 HSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSK 93 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~ 93 (321)
.....|+||++.+.+|+.++ |||.||..||..|+......||.||..+...
T Consensus 330 ~~~~~C~ICle~~~~pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCCccCcCCCCeEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34579999999999999999 9999999999999985577999999998743
No 56
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.79 E-value=1.6e-09 Score=78.48 Aligned_cols=54 Identities=9% Similarity=0.183 Sum_probs=44.8
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccccccCCCC
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRAD 99 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n 99 (321)
.+.||||+++|.+||.++.|||+|++.||.+|+.. ...||+++.++. ..++.++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~-~~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLS-IEEIVEI 56 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCC-GGGCEEC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCC-hhhcEEC
Confidence 47899999999999999339999999999999985 457999999997 4444443
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.9e-09 Score=80.96 Aligned_cols=48 Identities=27% Similarity=0.594 Sum_probs=40.1
Q ss_pred CcccccccccCccc--------------ceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKK--------------TMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~--------------Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
++..|+||++.|.+ ++.++.|||.||..||.+|+.. ...||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcc
Confidence 46679999998876 4555559999999999999986 579999999875
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1e-09 Score=82.24 Aligned_cols=48 Identities=29% Similarity=0.663 Sum_probs=41.8
Q ss_pred ccCCCCcccccccccCcccceecCCCCCc-ccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTTKECLHR-FCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl~~CgHt-FC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.+.+.+++.|+||++.+.+|+.++ |||. ||..|+.+ ...||.||..+.
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~~p-CgH~~~C~~C~~~-----~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVFVP-CGHLVTCKQCAEA-----VDKCPMCYTVIT 67 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCCSS-SCCCCBCHHHHHH-----CSBCTTTCCBCC
T ss_pred HHcCCCCCCCCcCCCCCCCEEEec-CCCHHHHHHHhhC-----CCCCccCCceec
Confidence 344567889999999999999999 9999 99999963 468999999986
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.72 E-value=3.2e-09 Score=86.57 Aligned_cols=48 Identities=42% Similarity=1.007 Sum_probs=43.6
Q ss_pred CCcccccccccCcccc-------eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 42 HSELMCPICLDMLKKT-------MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~P-------vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.+.+.|+||++.+.+| +.++ |||.||..||.+|+.. .+.||+||..+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKN-ANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHc-CCCCCCCCCcCC
Confidence 4678999999999987 7777 9999999999999986 679999999987
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=5.8e-09 Score=81.26 Aligned_cols=47 Identities=28% Similarity=0.661 Sum_probs=39.3
Q ss_pred CcccccccccCcccceec--CCCCCcccHhHHHHHHhc----C---CCCCCC--cccc
Q psy17011 43 SELMCPICLDMLKKTMTT--KECLHRFCSDCIITALRS----G---NKECPT--CRKK 89 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl--~~CgHtFC~~CI~~~l~~----~---~~~CP~--Cr~~ 89 (321)
+.++|+||++.+..|.++ .+|||.||+.||..++.. + ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 578999999999988765 249999999999999863 2 348999 9988
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.61 E-value=1.5e-08 Score=73.63 Aligned_cols=47 Identities=30% Similarity=0.530 Sum_probs=42.0
Q ss_pred CcccccccccCcccceec--CCCCCc-ccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKKTMTT--KECLHR-FCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl--~~CgHt-FC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
++..|+||++...+++.+ + |||. ||..|+.+|+.. ...||+||..+.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGK-TGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETT-EEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCC-CCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 567899999999999977 8 9999 899999999874 678999999885
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.56 E-value=2.6e-08 Score=72.16 Aligned_cols=47 Identities=19% Similarity=0.461 Sum_probs=41.5
Q ss_pred CcccccccccCcccceec--CCCCCc-ccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKKTMTT--KECLHR-FCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl--~~CgHt-FC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
....|+||++..++++.+ + |||. ||..|+.+++.. ...||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGR-TGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETT-EEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecC-CCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 456899999999999877 8 9999 999999998875 578999999885
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.55 E-value=6.3e-09 Score=78.97 Aligned_cols=48 Identities=25% Similarity=0.723 Sum_probs=41.6
Q ss_pred cCCCCcccccccccCcccceecCCCCCc-ccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 39 RSLHSELMCPICLDMLKKTMTTKECLHR-FCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 39 ~~l~~~l~C~IC~~~l~~Pvtl~~CgHt-FC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
+.+.++..|+||++.+.+|+.++ |||. ||..|+..+ ..||.||..+..
T Consensus 13 ~~l~~~~~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 13 RKLKEAMLCMVCCEEEINSTFCP-CGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHTBCTTTSSSBCCEEEET-TCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred HcCCCCCEeEEeCcccCcEEEEC-CCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 44556789999999999999999 9999 999999754 489999999864
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.54 E-value=4.8e-08 Score=78.32 Aligned_cols=48 Identities=23% Similarity=0.450 Sum_probs=39.7
Q ss_pred CcccccccccCcccc-----------------eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKKT-----------------MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~P-----------------vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
++-.|+||++.|.++ +.+.+|||.|+..||..|+.. ...||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 356899999998866 333349999999999999985 779999999864
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.45 E-value=1.8e-08 Score=96.65 Aligned_cols=48 Identities=29% Similarity=0.723 Sum_probs=43.0
Q ss_pred ccCCCCcccccccccCcccceecCCCCCc-ccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTTKECLHR-FCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl~~CgHt-FC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.+.+.+++.|+||++.+.+|+.++ |||. ||..|+..+ ..||.||..+.
T Consensus 289 ~~~l~~~~~C~IC~~~~~~~v~lp-CgH~~fC~~C~~~~-----~~CP~CR~~i~ 337 (345)
T 3t6p_A 289 LRRLQEERTCKVCMDKEVSVVFIP-CGHLVVCQECAPSL-----RKCPICRGIIK 337 (345)
T ss_dssp HHHHHTTCBCTTTSSSBCCEEEET-TCCEEECTTTGGGC-----SBCTTTCCBCC
T ss_pred HHhCcCCCCCCccCCcCCceEEcC-CCChhHhHHHHhcC-----CcCCCCCCCcc
Confidence 455678899999999999999998 9999 999999865 68999999986
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.6e-07 Score=69.18 Aligned_cols=44 Identities=23% Similarity=0.632 Sum_probs=39.5
Q ss_pred CcccccccccCcccceecCCCCCc-ccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 43 SELMCPICLDMLKKTMTTKECLHR-FCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~CgHt-FC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
+...|.||++...+++.++ |||. ||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLP-CRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETT-TTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEEC-CCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 5789999999999999999 9999 99999983 4689999999863
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=5.2e-07 Score=68.59 Aligned_cols=54 Identities=22% Similarity=0.504 Sum_probs=42.7
Q ss_pred CcccccccccCcc--cceecCCCC-----CcccHhHHHHHHhcC-CCCCCCccccccccccCC
Q psy17011 43 SELMCPICLDMLK--KTMTTKECL-----HRFCSDCIITALRSG-NKECPTCRKKLVSKRSLR 97 (321)
Q Consensus 43 ~~l~C~IC~~~l~--~Pvtl~~Cg-----HtFC~~CI~~~l~~~-~~~CP~Cr~~~~~~~~l~ 97 (321)
++..|.||++-+. +++.++ |. |.|+..||.+|+... ...||+||..+.....+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS 75 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred CCCCCeEcCccccCCCeeEec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence 4678999998763 577766 96 999999999999863 368999999987444433
No 68
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.28 E-value=9.4e-08 Score=77.97 Aligned_cols=47 Identities=23% Similarity=0.466 Sum_probs=0.4
Q ss_pred cccccccccCcccc-----------------eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 44 ELMCPICLDMLKKT-----------------MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~~P-----------------vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+-.|+||++.|.++ +...+|+|.||..||..|+.. ...||+||..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 35899999999874 222349999999999999986 678999999864
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.92 E-value=6.9e-06 Score=61.51 Aligned_cols=48 Identities=23% Similarity=0.567 Sum_probs=40.3
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcC-CCCCCCcccccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSG-NKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~-~~~CP~Cr~~~~ 91 (321)
.-.|.||..++..-.....|+|.|...||.+||+.. ...||.|+....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 468999999998666665699999999999999853 378999998875
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.69 E-value=2.3e-05 Score=61.60 Aligned_cols=46 Identities=33% Similarity=0.686 Sum_probs=38.9
Q ss_pred cccccccCcccce-ecCCCCCcccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 46 MCPICLDMLKKTM-TTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 46 ~C~IC~~~l~~Pv-tl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
.|++|.-.+..-. +++ |+|.||..|+..|...+.+.||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5889988777654 555 999999999999988778899999999874
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.33 E-value=0.00019 Score=51.25 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=38.7
Q ss_pred CcccccccccCcccceecCCCCC-----cccHhHHHHHHhc-CCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKKTMTTKECLH-----RFCSDCIITALRS-GNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~CgH-----tFC~~CI~~~l~~-~~~~CP~Cr~~~~ 91 (321)
+.-.|.||++-..++...| |.+ .|...||.+|+.. ++..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 5668999998766776555 654 7999999999974 5689999999875
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.19 E-value=7.7e-05 Score=70.99 Aligned_cols=50 Identities=24% Similarity=0.604 Sum_probs=38.7
Q ss_pred CCcccccccccCccc----cee---cCCCCCcccHhHHHHHHhcCC----------CCCCCcccccc
Q psy17011 42 HSELMCPICLDMLKK----TMT---TKECLHRFCSDCIITALRSGN----------KECPTCRKKLV 91 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~----Pvt---l~~CgHtFC~~CI~~~l~~~~----------~~CP~Cr~~~~ 91 (321)
.....|+||..++.+ |.. ...|||.|...||.+|++... ..||.||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 356789999998876 311 124999999999999997411 47999999886
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.00 E-value=0.00064 Score=72.34 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=62.9
Q ss_pred ccCCCCcccccccccCcccceecCCCC-CcccHhHHHHHHhcCCCCCCCccccccccccCCCChHHHHHHHHHc
Q psy17011 38 PRSLHSELMCPICLDMLKKTMTTKECL-HRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIY 110 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pvtl~~Cg-HtFC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~kl~ 110 (321)
..++.+++.|||-.++|.|||.++ -| ++|=+.+|.+|+.. ..+||.-|.++. ...+.||..|+..|..|.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilp-sG~~TydR~~I~~wl~~-~~tdP~Tr~~L~-~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILP-ASKMNIDRSTIKAHLLS-DSTDPFNRMPLK-LEDVTPNEELRQKILCFK 955 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECT-TTCCEEEHHHHHHHHTT-CCBCTTTCCBCC-GGGCEECHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcC-CCCEEECHHHHHHHHhc-CCCCCCCCCCCC-cccccccHHHHHHHHHHH
Confidence 456778999999999999999999 87 69999999999986 678999999997 568899999999999884
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.42 E-value=0.0013 Score=51.17 Aligned_cols=33 Identities=15% Similarity=0.660 Sum_probs=28.3
Q ss_pred Cccccccccc-Cccccee--cCCCCCcccHhHHHHHH
Q psy17011 43 SELMCPICLD-MLKKTMT--TKECLHRFCSDCIITAL 76 (321)
Q Consensus 43 ~~l~C~IC~~-~l~~Pvt--l~~CgHtFC~~CI~~~l 76 (321)
+++.|+||.+ ++.+|+. +. |+|+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHh
Confidence 5789999996 5788988 77 99999999999743
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.83 E-value=0.0056 Score=55.41 Aligned_cols=48 Identities=23% Similarity=0.567 Sum_probs=41.0
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcC-CCCCCCcccccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSG-NKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~-~~~CP~Cr~~~~ 91 (321)
-..|.||.++...-+..+.|+|.|...|+.+|++.. ...||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 567999999998877776799999999999999753 469999999764
No 76
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=94.22 E-value=0.27 Score=37.79 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=51.6
Q ss_pred CCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeeec
Q psy17011 241 DDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWK 319 (321)
Q Consensus 241 ~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~~ 319 (321)
.+-.+.|+. .||.++.+||+.||.|+..+- +.+||- +.| .-+.+.|+.+|++.|= .+.=|-+.|+-.
T Consensus 21 k~KflVp~~---~tv~~~~~~lRkrL~l~~~~a----lFlyVn---n~~-~P~~d~~~~~Ly~~~k-~DGfLyv~Ys~~ 87 (91)
T 4gdk_A 21 TKKWAVERT---RTIQGLIDFIKKFLKLVASEQ----LFIYVN---QSF-APSPDQEVGTLYECFG-SDGKLVLHYCKS 87 (91)
T ss_dssp CCEEEEETT---CBHHHHHHHHHHHTTCCSSSC----CEEEET---TTB-CCCTTCBHHHHHHHHC-BTTEEEEEEESS
T ss_pred ccEEEcCCC---CCHHHHHHHHHHHhCCCCCCe----EEEEEC---Ccc-CCChhhHHHHHHHHhC-CCCEEEEEEeCc
Confidence 355677888 999999999999999975333 455663 333 3355899999999995 899999999864
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.06 E-value=0.094 Score=50.27 Aligned_cols=67 Identities=21% Similarity=0.414 Sum_probs=50.7
Q ss_pred CCCcccccccccCcccceecCCCCCcccHhH--HHHHHh-cCCCCCCCccccccccccCCCChHHHHHHHH
Q psy17011 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDC--IITALR-SGNKECPTCRKKLVSKRSLRADPNFDLLISK 108 (321)
Q Consensus 41 l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~C--I~~~l~-~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~k 108 (321)
+.-.|.|||-...+..|+....|.|.-|-+- +..+.. .+...||+|.+.+. ..++..|..+..++..
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~-~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA-LENLAISEFVDDILQN 315 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC-GGGEEEBHHHHHHHTT
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC-HHHeeEcHHHHHHHHh
Confidence 4456999999999999999888999966433 333322 35679999999886 6788888877776543
No 78
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=93.00 E-value=0.26 Score=40.38 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=51.7
Q ss_pred CCCCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 239 ETDDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 239 ~~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
.+.+|+ .|+. .||.++-.+|..||.|+..+-- |++|| ++- +.+.+.||.+|.+.|=-.+.=|-|.|+-
T Consensus 53 dk~Kfl-Vp~~---~tv~qf~~~iRkrL~l~~~~al---Fl~~v----n~~-~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 120 (130)
T 2zjd_A 53 DKTKFL-VPDH---VNMSELIKIIRRRLQLNANQAF---FLLVN----GHS-MVSVSTPISEVYESEKDEDGFLYMVYAS 120 (130)
T ss_dssp SCCEEE-EETT---CBHHHHHHHHHHHHTCCTTCCE---EEEET----TTE-ECCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred cccEEE-cCCC---CcHHHHHHHHHHHhCCCCCceE---EEEEE----CCc-cCCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 444675 8888 9999999999999999864443 44243 332 5677999999999992277889999975
No 79
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=92.44 E-value=0.41 Score=36.81 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=48.7
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeeec
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWK 319 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~~ 319 (321)
+-.+.|+. .||.++-+||+.||.|+. +.+||- +.| .-+.+.|+.+|++.|= .+.=|.+.|+-.
T Consensus 25 ~KflV~~~---~t~~~~v~~lRkrL~l~a-------lFlyVN---n~f-~Ps~d~~~~~Ly~~fk-~dg~Lyv~Ys~~ 87 (91)
T 3w1s_C 25 SVCKISMS---QSFAMVILFLKRRLKMDH-------VYCYIN---NSF-APSPQQNIGELWMQFK-TNDELIVSYCAS 87 (91)
T ss_dssp -EEEEETT---SBHHHHHHHHHHHHTCSC-------CEEEET---TTB-CCCTTSBHHHHHHHHC-BTTEEEEEEEC-
T ss_pred cEEEcCCC---CCHHHHHHHHHHhhCCce-------EEEEEC---Ccc-CCCcccHHHHHHHHhC-CCCEEEEEEeCc
Confidence 55668889 999999999999999952 566763 334 3455899999999986 788899999854
No 80
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=92.09 E-value=0.092 Score=50.14 Aligned_cols=68 Identities=29% Similarity=0.427 Sum_probs=51.8
Q ss_pred CCCCcccccccccCcccceecCCCCCcccHh--HHHHHHh-cCCCCCCCccccccccccCCCChHHHHHHHH
Q psy17011 40 SLHSELMCPICLDMLKKTMTTKECLHRFCSD--CIITALR-SGNKECPTCRKKLVSKRSLRADPNFDLLISK 108 (321)
Q Consensus 40 ~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~--CI~~~l~-~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~k 108 (321)
.+.-.|.|||-...+..|+....|.|.-|-+ -+..+.. .+...||+|.+.+. ..+++.|..+.+++..
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~-~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA-YESLILDGLFMEILND 281 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC-GGGEEEBHHHHHHHTT
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC-HHHeEEcHHHHHHHHh
Confidence 3445789999999999999988899995543 3333322 35679999999886 6788889888877654
No 81
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=91.50 E-value=0.25 Score=38.17 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=47.3
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEe
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYY 316 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y 316 (321)
--|.|.+. .||..||+-|+.+.+++.. .+.+|| +|. +|.++.||.+-. =....-|.|||
T Consensus 34 ~~v~v~p~---DTI~~LK~~I~~k~Gip~~----qQrLif----~Gk--~LkD~~TL~dY~---I~dgstLhL~~ 92 (93)
T 3plu_A 34 VRVKCLGE---DSVGDFKKVLSLQIGTQPN----KIVLQK----GGS--VLKDHISLEDYE---VHDQTNLELYY 92 (93)
T ss_dssp EEEEEETT---SBHHHHHHHHHHHHTCCGG----GEEEEE----TTE--ECCTTSBTGGGT---CCTTCEEEEEE
T ss_pred EEEEECCc---CHHHHHHHHHHHHhCCCHH----HEEEEe----CCE--EccCcCCHHHcC---CCCCCEEEEEe
Confidence 55889999 9999999999999999863 345776 577 899999997633 34567888888
No 82
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=91.06 E-value=0.89 Score=36.54 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=52.6
Q ss_pred CCCCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 239 ETDDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 239 ~~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
.+.+|+ .|+. .||.++..+|..||.|...+- +.+|| + + + +.+.+.||.+|.+.|=-.+.=|-|.|+-
T Consensus 47 dk~Kfl-Vp~~---~tv~qf~~~iRkrl~l~~~~a----lFl~V--n-~-~-~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 47 DKRKYL-VPAD---LTVGQFVYVIRKRIMLPPEKA----IFIFV--N-D-T-LPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp SCCEEE-EETT---SBHHHHHHHHHHHTTCCTTCC----EEEEB--T-T-B-CCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred ccceEE-cCCC---CCHHHHHHHHHHHhCcCCCcc----EEEEE--C-C-c-cCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 444676 8889 999999999999999975332 44455 3 3 3 6677899999999996678889999985
Q ss_pred c
Q psy17011 319 K 319 (321)
Q Consensus 319 ~ 319 (321)
.
T Consensus 114 ~ 114 (118)
T 3rui_B 114 E 114 (118)
T ss_dssp C
T ss_pred c
Confidence 4
No 83
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=89.57 E-value=1.6 Score=34.94 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=50.9
Q ss_pred CCCCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 239 ETDDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 239 ~~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
.+.+|+ .|+. .||.++-.+|..||.|+..+-- |+ || + +- ..+.+.||.+|.++|=-.+.=|-|.|+-
T Consensus 45 ~k~Kfl-Vp~~---~tv~~f~~~iRk~l~l~~~~al---fl-~v--n-~~--~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 45 DKRKYL-VPSD---ITVAQFMWIIRKRIQLPSEKAI---FL-FV--D-KT--VPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp SCCEEE-EETT---SBHHHHHHHHHHHHTCCTTSCC---EE-EB--T-TB--CCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred cceEEE-cCCC---CCHHHHHHhhHHhhcCCCCCcE---EE-EE--C-CE--ecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 344664 7888 9999999999999999864433 43 44 2 32 5677899999999993357889999975
Q ss_pred c
Q psy17011 319 K 319 (321)
Q Consensus 319 ~ 319 (321)
.
T Consensus 112 ~ 112 (117)
T 1eo6_A 112 E 112 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 84
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=88.95 E-value=0.23 Score=37.26 Aligned_cols=43 Identities=33% Similarity=0.828 Sum_probs=34.4
Q ss_pred CCcccccccccCcccceecCCC----CCcccHhHHHHHHhc----CCCCCCC
Q psy17011 42 HSELMCPICLDMLKKTMTTKEC----LHRFCSDCIITALRS----GNKECPT 85 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pvtl~~C----gHtFC~~CI~~~l~~----~~~~CP~ 85 (321)
...|.|.+|.+-|.+...+. | +|.||-.|-..+++. ....||.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 46789999999999986666 5 799999999998873 2346765
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=88.38 E-value=0.5 Score=36.12 Aligned_cols=49 Identities=27% Similarity=0.661 Sum_probs=38.0
Q ss_pred CcccccccccCccc-----c-eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKK-----T-MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~-----P-vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
..-.|.||.+-.-- + |-..+|+-..|+.|..--.+.++..||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34689999986331 1 2234699999999998878888999999999885
No 86
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=87.92 E-value=2.6 Score=32.49 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=50.0
Q ss_pred CCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeeec
Q psy17011 241 DDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWK 319 (321)
Q Consensus 241 ~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~~ 319 (321)
.+-.+.++. .||.++-+||+.||.|+ . +.+||-. -| .-+.+.|+.+|++.|=- +.=|-+.|+-.
T Consensus 29 k~KflV~~~---~t~~~~~~~lRkrL~l~----a---lFlyvn~---~~-~Ps~d~~m~~LY~~~kd-DGfLyi~Ys~~ 92 (96)
T 1wz3_A 29 QSKFKVSGS---DKFANVIDFLRRQLHSD----S---LFVYVNS---AF-SPNPDESVIDLYNNFGF-DGKLVVNYACS 92 (96)
T ss_dssp CCEEEEETT---SBTHHHHHHHHHHHTCS----S---CEEEEEE---EE-CCCTTSBHHHHHHHHCB-TTBEEEEEESC
T ss_pred ccEEEeCCC---CcHHHHHHHHHHhcCCc----e---EEEEECC---cc-cCChhhHHHHHHHHhCC-CCEEEEEEeCC
Confidence 356678888 99999999999999987 2 5556632 14 45669999999999954 77799999854
No 87
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=86.72 E-value=0.69 Score=36.11 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=44.6
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEe
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYY 316 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y 316 (321)
-|.+... .||..||+-|+.+.+++..+ +.+|| +|. +|.++.||.+-.. +...-|.|+|
T Consensus 42 ~lev~p~---dTV~~lK~~Ia~k~Gip~~q----QrLi~----~Gk--~L~D~~TL~dygI---~~gstlhL~~ 99 (100)
T 1uh6_A 42 RVKCNTD---DTIGDLKKLIAAQTGTRWNK----IVLKK----WYT--IFKDHVSLGDYEI---HDGMNLELYY 99 (100)
T ss_dssp EEEEETT---SBHHHHHHHHHHHHCCCGGG----CEEEE----TTE--ECCSSCBHHHHTC---CTTEEEEEEC
T ss_pred EEEeCCC---CcHHHHHHHHHHHhCCCHHH----EEEEE----CCE--ECCCCCCHHHcCC---CCCCEEEEEe
Confidence 3888999 99999999999999998533 34665 577 9999999997432 3344577777
No 88
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=85.57 E-value=4.2 Score=32.59 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=52.4
Q ss_pred CCCCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 239 ETDDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 239 ~~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
.+.+| ..|+. .||.++..+|..||.|...+- +.+|| + + - +.+.+.||.+|.+.|=-.+.=|-|.|+-
T Consensus 48 dk~Kf-lVp~~---~tv~qf~~~iRkrl~l~~~~a----lFl~V--n-~-~-~p~~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 48 DRCKF-LVPSD---LTVGQFVSVLRKRVQLEAESA----LFVYT--N-D-T-VLPSSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp SSCEE-EEETT---CBHHHHHHHHHHHHTCCTTSC----CEEEE--T-T-E-ECCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred CcceE-EcCCC---CCHHHHHHHHHHHhCCCccce----EEEEE--C-C-c-CCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 44466 58888 999999999999999986443 34455 2 3 2 6778999999999986678889999985
Q ss_pred c
Q psy17011 319 K 319 (321)
Q Consensus 319 ~ 319 (321)
.
T Consensus 115 e 115 (119)
T 3h9d_A 115 E 115 (119)
T ss_dssp C
T ss_pred c
Confidence 4
No 89
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.48 E-value=1 Score=32.41 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=42.6
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~ 317 (321)
..|..+.+ +||..||+.|+.+.+++...+ -++| .|. +|.++.||.+... +.+.-+.|..+
T Consensus 20 ~~~~v~~~---~tV~~LK~~i~~~~~i~~~~q----rL~~----~gk--~L~d~~tL~~~~i---~~g~~i~l~~~ 79 (81)
T 2dzi_A 20 CSLQVPED---ELVSTLKQLVSEKLNVPVRQQ----RLLF----KGK--ALADGKRLSDYSI---GPNSKLNLVVK 79 (81)
T ss_dssp EEEEECSS---CBHHHHHHHHHHHTCCCTTTC----EEEE----TTE--ECCTTSBGGGGTC---CSSBCCEEECC
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCcCHHHE----EEEE----CCe--ECCCCCcHHHcCC---CCCCEEEEEEe
Confidence 34788888 999999999999999985433 3554 477 8999999987533 23344444443
No 90
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=85.41 E-value=5 Score=31.55 Aligned_cols=64 Identities=22% Similarity=0.273 Sum_probs=47.5
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~ 317 (321)
+-...++. .||.++-.+|..||.|+..+-- |+ || + +- ..+.+.||.+|.+.|=-...=|-|.|+
T Consensus 46 ~KflVp~~---~tv~~~~~~iRk~l~l~~~~al---fl-~v--n-~~--~p~~~~~m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 46 RKYLVPSD---LTVGQFYFLIRKRIHLRPEDAL---FF-FV--N-NT--IPPTSATMGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp CEEEEETT---CBHHHHHHHHHHHTTCCTTSCC---EE-EB--T-TB--CCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred eEEEeCCC---CcHHHHHHHHHHHhcCCCCCcE---EE-EE--C-CE--ecCccChHHHHHHHcCCCCCEEEEEEe
Confidence 34456778 9999999999999999864433 43 44 2 32 567789999999999335778888886
No 91
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=85.11 E-value=0.83 Score=32.27 Aligned_cols=60 Identities=10% Similarity=0.152 Sum_probs=42.5
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~ 317 (321)
..+..+.+ +||..||+.|+.+.+++...+ -++| .|. .|.++.||.+.. .+.+.-+.|..+
T Consensus 13 ~~i~v~~~---~tv~~lK~~i~~~~~i~~~~q----~L~~----~g~--~L~d~~tL~~~~---i~~g~~i~l~~~ 72 (76)
T 3a9j_A 13 ITLEVEPS---DTIENVKAKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYN---IQRESTLHLVLR 72 (76)
T ss_dssp EEEECCTT---CBHHHHHHHHHHHHCCCGGGE----EEEE----TTE--ECCTTCBTGGGT---CCTTCEEEEEEC
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCcCHHHe----EEEE----CCe--ECCCCCcHHHcC---CCCCCEEEEEEe
Confidence 45788888 999999999999999985333 3444 476 899999998753 234444554444
No 92
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=84.99 E-value=0.64 Score=33.86 Aligned_cols=60 Identities=8% Similarity=0.115 Sum_probs=43.5
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~ 317 (321)
-.|.++.. .||..||+.|+.+.+++.... -++| .|. +|.++.||.+.. .+...-+.|..+
T Consensus 16 ~~~~v~~~---~tV~~lK~~i~~~~~ip~~~q----rL~~----~g~--~L~d~~tL~~~~---i~~~~~i~l~~r 75 (85)
T 3n3k_B 16 IILEVEPS---DTIENVKAKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYN---IHNHSALYLLLK 75 (85)
T ss_dssp EEEECCTT---CBHHHHHHHHHHHHCCCGGGE----EEEE----TBE--ECCTTCBTTTTT---CCTTCEEEEEEC
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCCCHHHE----EEEE----CCe--ECCCCCCHHHCC---CCCCCEEEEEEe
Confidence 45788888 999999999999999985333 3444 466 899999998753 344445555544
No 93
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=84.97 E-value=0.87 Score=35.17 Aligned_cols=54 Identities=20% Similarity=0.450 Sum_probs=40.8
Q ss_pred cCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCccccccc
Q psy17011 36 VSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92 (321)
Q Consensus 36 ~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~~ 92 (321)
.+...+-.-+.|..|.-..+.= +....|-+|..|+...+.. ...||+|+.++..
T Consensus 20 ~~d~s~~G~~nCKsCWf~~k~L--V~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPt 73 (99)
T 2ko5_A 20 IPDATHLGPQFCKSCWFENKGL--VECNNHYLCLNCLTLLLSV-SNRCPICKMPLPT 73 (99)
T ss_dssp SSSCCCSCCCCCCSSCSCCSSE--EECSSCEEEHHHHHHTCSS-SSEETTTTEECCC
T ss_pred cCCccccCcccChhhccccCCe--eeecchhhHHHHHHHHHhh-ccCCcccCCcCCc
Confidence 3445566778899998666643 3435788899999998875 6789999999973
No 94
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=84.73 E-value=0.92 Score=32.02 Aligned_cols=60 Identities=10% Similarity=0.104 Sum_probs=42.5
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~ 317 (321)
..+..+.+ .||..||.-|+.+.+++.... -++| .|. +|.++.||.+... +...-+.|..+
T Consensus 13 ~~~~v~~~---~tv~~lK~~i~~~~~i~~~~q----~L~~----~g~--~L~d~~tL~~~~i---~~g~~i~l~~~ 72 (76)
T 1ndd_A 13 IEIDIEPT---DKVERIKERVEEKEGIPPQQQ----RLIY----SGK--QMNDEKTAADYKI---LGGSVLHLVLA 72 (76)
T ss_dssp EEEECCTT---CBHHHHHHHHHHHHCCCGGGE----EEEE----TTE--ECCTTSBGGGGTC---CTTCEEEEEEC
T ss_pred EEEEECCC---ChHHHHHHHHHHHHCcChHHE----EEEE----CCE--ECCCCCcHHHcCC---CCCCEEEEEEe
Confidence 45778888 999999999999999985333 3444 477 8999999987532 33444444443
No 95
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=84.45 E-value=0.93 Score=32.89 Aligned_cols=60 Identities=8% Similarity=0.092 Sum_probs=43.6
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~ 317 (321)
..|.++.. .||..||..|+.+.+++.... .++| .|. +|.++.||.+.. .+...-+.|..+
T Consensus 16 ~~~~v~~~---~tV~~lK~~i~~~~~i~~~~q----rL~~----~g~--~L~d~~tL~~~~---i~~~~~l~l~~r 75 (85)
T 3mtn_B 16 ITLEVEPS---DTIENVKAKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYN---IQKWSTLFLLLR 75 (85)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHHCCCGGGC----EEEE----TTE--ECCTTSBTGGGT---CCTTCEEEEECC
T ss_pred EEEEECCC---CCHHHHHHHHHHHHCcChHHE----EEEE----CCE--ECCCCCCHHHcC---CCCCCEEEEEEE
Confidence 56788888 999999999999999985333 3444 476 899999998853 234444555444
No 96
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=84.33 E-value=1.2 Score=32.62 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=38.5
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..+.. .||..||..|+.+.+++.... -++| .|. +|.++.||.+..
T Consensus 25 ~~~~v~~~---~tV~~lK~~i~~~~gip~~~q----rL~~----~G~--~L~d~~tL~~~~ 72 (88)
T 3dbh_I 25 IEIDIEPT---DKVERIKERVEEKEGIPPQQQ----RLIY----SGK--QMNDEKTAADYK 72 (88)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHHCCCGGGC----CEEE----TTE--ECCTTSBGGGGT
T ss_pred EEEEECCC---CCHHHHHHHHHHHHCcCHHHE----EEEE----CCe--ECCCCCcHHHcC
Confidence 46788888 999999999999999985433 3444 577 899999999853
No 97
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=83.98 E-value=0.94 Score=32.26 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=37.5
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..+.+ .||..||+.|+.+.+++.... -++| .|. +|.++.||.+..
T Consensus 16 ~~~~v~~~---~tV~~LK~~i~~~~~i~~~~q----rL~~----~gk--~L~d~~tL~~~~ 63 (77)
T 2bwf_A 16 WEVNVAPE---STVLQFKEAINKANGIPVANQ----RLIY----SGK--ILKDDQTVESYH 63 (77)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHHCCCGGGE----EEEE----TTE--ECCTTSBTGGGT
T ss_pred EEEEECCC---CcHHHHHHHHHHHhCCCHHHE----EEEE----CCe--EcCCCCCHHHcC
Confidence 45778888 999999999999999985333 3444 476 899999998754
No 98
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.98 E-value=1.7 Score=31.74 Aligned_cols=48 Identities=8% Similarity=-0.069 Sum_probs=38.0
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
..|..+.. .||..||+.|+.+.+++.... -++| .|. +|.++.||.+..
T Consensus 20 ~~~~v~~~---~tV~~lK~~i~~~~gi~~~~q----rL~~----~Gk--~L~d~~tL~~~~ 67 (87)
T 1wh3_A 20 YAYAINPN---SFILGLKQQIEDQQGLPKKQQ----QLEF----QGQ--VLQDWLGLGIYG 67 (87)
T ss_dssp EEEEECSS---SBHHHHHHHHHHHTCCCTTTE----EEEE----TTE--ECCSSSBHHHHT
T ss_pred EEEEeCCC---ChHHHHHHHHHHHhCCChHHE----EEEE----CCE--EccCCCCHHHCC
Confidence 45778888 999999999999999885333 3444 476 899999998864
No 99
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=83.52 E-value=1.1 Score=32.23 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=38.2
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
..|..+.. .||..||+.|+.+.+++... +-++| .|. .|.++.||.+..
T Consensus 17 ~~~~v~~~---~tV~~lK~~i~~~~gip~~~----qrL~~----~G~--~L~d~~tL~~~~ 64 (79)
T 3phx_B 17 STYEVRLT---QTVAHLKQQVSGLEGVQDDL----FWLTF----EGK--PLEDQLPLGEYG 64 (79)
T ss_dssp EEEEECTT---SBHHHHHHHHHHHHTCCGGG----EEEEE----TTE--ECCTTSBGGGGT
T ss_pred EEEEECCc---ChHHHHHHHHHhhcCCCHHH----EEEEE----CCE--ECCCCCcHHHCC
Confidence 45788888 99999999999999998533 34554 577 899999998854
No 100
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.03 E-value=1.6 Score=33.95 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=39.0
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
--|.+... .||..||.-|+.+.+++.. .+-+|| .|. +|.++.||.+-+
T Consensus 32 ~~lev~~~---~TV~~lK~kI~~k~gip~~----qQrLI~----~GK--iL~D~~TL~~y~ 79 (100)
T 1wju_A 32 NLLETRLH---ITGRELRSKIAETFGLQEN----YIKIVI----NKK--QLQLGKTLEEQG 79 (100)
T ss_dssp EEEEEESS---SBHHHHHHHHHHHTTCCST----TCEEEE----TTE--ECCTTSBHHHHT
T ss_pred EEEEeCCc---CHHHHHHHHHHHHHCcCHH----HeEEEe----CCe--ECCCCCcHHHcC
Confidence 45778888 9999999999999999853 335775 587 999999998854
No 101
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.94 E-value=1.8 Score=32.51 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=38.1
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..... .||..||+.|+.+.+++....- +|| .|. +|.++.||.+..
T Consensus 29 ~~~~v~~~---~TV~~LK~~I~~~~gip~~~qr----L~~----~Gk--~L~D~~tL~~~g 76 (96)
T 1wx8_A 29 HEFFLAEN---SNVRRFKKQISKYLHCNADRLV----LIF----TGK--ILRDQDILSQRG 76 (96)
T ss_dssp EEEEEETT---CCHHHHHHHHHHHTCSCTTTBC----CEE----TTE--ECCTTSCHHHHT
T ss_pred EEEEECCC---CCHHHHHHHHHHHhCCCHHHEE----EEE----CCE--ECCCcCCHHHCC
Confidence 45778888 9999999999999999864443 444 477 899999999854
No 102
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=82.90 E-value=1.4 Score=31.61 Aligned_cols=48 Identities=6% Similarity=0.118 Sum_probs=38.7
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.+..... .||..|++.++.+.+++..++- ++| +|. .|.++.||.+..
T Consensus 16 ~~~~v~~~---~tv~~lk~~i~~~~gi~~~~qr----L~~----~G~--~L~d~~tl~~~~ 63 (79)
T 2uyz_B 16 IHFKVKMT---THLKKLKESYCQRQGVPMNSLR----FLF----EGQ--RIADNHTPKELG 63 (79)
T ss_dssp EEEEEETT---SCTHHHHHHHHHHHTCCGGGEE----EEE----TTE--ECCTTCCHHHHT
T ss_pred EEEEECCC---ChHHHHHHHHHHHHCCCcccEE----EEE----CCE--EeCCCCCHHHcC
Confidence 46788888 9999999999999999854333 444 587 899999999864
No 103
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=82.81 E-value=1.1 Score=33.56 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=44.6
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
-.|..+.. .||..||+.|+.+.+++.... -++| .|. +|.++.||.+.. .+.+.-+.|..+.
T Consensus 14 ~~~~v~~~---~TV~~LK~~i~~~~gip~~~q----rL~~----~G~--~L~d~~tL~~~~---i~~~~~i~l~~r~ 74 (96)
T 3k9o_B 14 ITLEVEPS---DTIENVKAKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYN---IQKESTLHLVLRL 74 (96)
T ss_dssp EEEECCTT---CBHHHHHHHHHHHHCCCGGGE----EEEE----TTE--ECCTTSBTGGGT---CCTTCEEEEEECC
T ss_pred EEEEECCC---CCHHHHHHHHHhhhCCChhHE----EEEE----CCE--ECCCCCcHHHcC---CCCCCEEEEEEEc
Confidence 45788888 999999999999999985333 3444 476 899999999854 3445555555543
No 104
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.39 E-value=2.1 Score=32.04 Aligned_cols=47 Identities=30% Similarity=0.288 Sum_probs=37.1
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHh--ccCCCCcCCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRL--RLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl--~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
-.|.++.. .||..||+.|+.+. +++.. .+-+|| .|. +|.++.||.+.
T Consensus 22 ~~v~v~~~---~TV~~lK~~I~~~~~~~i~~~----~QrLi~----~Gk--~L~D~~tL~~~ 70 (93)
T 1wgd_A 22 LELSGDRG---WSVGHLKAHLSRVYPERPRPE----DQRLIY----SGK--LLLDHQCLRDL 70 (93)
T ss_dssp EEEECCTT---SCHHHHHHHHHHHSTTCCCTT----TCEEEE----TTE--ECCSSSCHHHH
T ss_pred EEEecCCC---CcHHHHHHHHHHHhcCCCChH----HeEEEE----CCE--ECcCcCCHHHH
Confidence 34567788 99999999999998 88743 334665 577 89999999986
No 105
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=82.35 E-value=7.4 Score=31.42 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=52.3
Q ss_pred CCCCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 239 ETDDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 239 ~~~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
.+.+| ..|+. .||..+..+|..||.|...+-- | +|| + ++ +.+.+.||.+|.+.|=-.+.=|-|.|+-
T Consensus 53 dK~Kf-lVp~~---~tv~qf~~~IRkrl~L~~~~al---F-l~V--n--n~-lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 53 DKKKY-LVPSD---LTVGQFYFLIRKRIHLRPEDAL---F-FFV--N--NV-IPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp SCCEE-EEETT---SBHHHHHHHHHHHTTCCTTSCC---E-EEB--T--TB-CCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred cCCEE-EcCCC---CEeeeehhhhHhhcCCCccccE---E-EEE--C--Cc-cCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 34466 47888 9999999999999999864433 3 344 2 33 6678999999999986678889999985
Q ss_pred c
Q psy17011 319 K 319 (321)
Q Consensus 319 ~ 319 (321)
.
T Consensus 120 e 120 (125)
T 3m95_A 120 E 120 (125)
T ss_dssp S
T ss_pred c
Confidence 4
No 106
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=81.59 E-value=1.2 Score=32.95 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=38.5
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
..|..... .||..||+.|+.+.+++... +-+|| .|. .|.++.||.+..
T Consensus 18 ~~~~v~~~---~tV~~lK~~i~~~~gip~~~----qrLi~----~Gk--~L~d~~tL~~~~ 65 (90)
T 4dwf_A 18 RTFIVGAQ---MNVKEFKEHIAASVSIPSEK----QRLIY----QGR--VLQDDKKLQEYN 65 (90)
T ss_dssp EEEEEETT---CBHHHHHHHHHHHHTCCGGG----EEEEE----TTE--ECCTTSBGGGGT
T ss_pred EEEEECCC---CCHHHHHHHHHHHhCCCHHH----EEEEE----CCe--ECCCCCCHHHcC
Confidence 45788888 99999999999999997533 34555 477 899999999865
No 107
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=81.35 E-value=1.5 Score=32.62 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=38.3
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..+.. .||..||+.|+.+.+++.... -++| .|. +|.++.||.+..
T Consensus 30 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~q----rL~~----~Gk--~L~D~~tL~~~g 77 (91)
T 3v6c_B 30 ITLEVEPS---DTIENVKAKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYN 77 (91)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHHCCCGGGC----EEEE----TTE--ECCTTCBTGGGT
T ss_pred EEEEECCC---CCHHHHHHHHHhhhCCChhhE----EEEE----CCe--ECCCcCcHHHCC
Confidence 56788888 999999999999999985333 4554 577 899999998753
No 108
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=81.24 E-value=1.5 Score=33.30 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=38.3
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..... .||..||+.|+.+.+++.... -++| .|. +|.++.||.+..
T Consensus 35 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~q----rLi~----~Gk--~L~D~~tL~~~~ 82 (98)
T 4hcn_B 35 ITLEVESS---DTIDNVKSKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYN 82 (98)
T ss_dssp EEEECCTT---CBHHHHHHHHHHHHCCCGGGC----EEEE----TTE--ECCTTCBSGGGT
T ss_pred EEEEECCC---CcHHHHHHHHHHHhCCChhHE----EEEE----CCE--ECCCCCcHHHCC
Confidence 46788888 999999999999999985333 4554 577 899999998753
No 109
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=80.51 E-value=2 Score=33.02 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=37.9
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHD 303 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~ 303 (321)
.|..... .||..||+.|+.+.+++...+ -+|| .|. +|.++.||.+...
T Consensus 30 ~l~v~~~---~TV~~LK~~I~~~~gip~~~q----rLi~----~Gk--~L~D~~tL~~~gi 77 (106)
T 1wx7_A 30 DFSVTDT---CTIQQLKEEISQRFKAHPDQL----VLIF----AGK--ILKDPDSLAQCGV 77 (106)
T ss_dssp EEEEETT---CCHHHHHHHHHHHHTCCTTTE----EEEE----TTE--ECCTTSCHHHHTC
T ss_pred EEEECCC---CcHHHHHHHHHHHHCcChhhE----EEEE----CCE--ECCCcCcHHHcCC
Confidence 5777888 999999999999999985333 4554 476 8999999998654
No 110
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=79.70 E-value=1.7 Score=32.23 Aligned_cols=61 Identities=10% Similarity=0.123 Sum_probs=44.3
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
-.|.++.. .||..||+.|+.+.+++... +-+|| .|. +|.++.||.+.. .+.+.-+.|..|.
T Consensus 13 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~----qrLi~----~Gk--~L~D~~tL~~~~---i~~g~~l~l~~rl 73 (88)
T 4fbj_B 13 IEIDIEPT---DKVERIKERVEEKEGIPPQQ----QRLIY----SGK--QMNDEKTAADYK---ILGGSVLHLVLAL 73 (88)
T ss_dssp EEEECCTT---CBHHHHHHHHHHHHCCCGGG----CEEEE----TTE--ECCTTSBTTTTT---CCTTCEEEEECBC
T ss_pred EEEEECCC---CCHHHHHHHHHHHHCcChhH----EEEEE----CCe--ECCCCCcHHHcC---CCCCCEEEEEEEC
Confidence 45788888 99999999999999998533 34555 477 899999998753 3444455555443
No 111
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=79.69 E-value=1.5 Score=32.21 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=38.3
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
..|..... .||..||+.|+.+.+++... +-+|| .|. +|.++.||.+..
T Consensus 30 ~~~~v~~~---~tV~~lK~~i~~~~gip~~~----qrLi~----~Gk--~L~D~~tL~~~~ 77 (88)
T 4eew_A 30 RTFIVGAQ---MNVKEFKEHIAASVSIPSEK----QRLIY----QGR--VLQDDKKLQEYN 77 (88)
T ss_dssp EEEEEETT---CBHHHHHHHHHHHHTCCGGG----EEEEE----TTE--ECCTTSBGGGGT
T ss_pred EEEEECCC---CCHHHHHHHHHHHhCCCHHH----EEEEE----CCE--ECCCCCcHHHcC
Confidence 45788888 99999999999999998533 34555 577 899999998753
No 112
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=79.54 E-value=2.8 Score=31.53 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=38.3
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHD 303 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~ 303 (321)
..|..+.. .||..||+.|+.+.+++.... -++| .|. +|.++.||.+...
T Consensus 30 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~q----rLi~----~Gk--~L~D~~tL~~y~I 78 (93)
T 2l7r_A 30 HTFEVTGQ---ETVAQIKAHVASLEGIAPEDQ----VVLL----AGA--PLEDEATLGQCGV 78 (93)
T ss_dssp EEEECCSS---CBHHHHHHHHHHHHTCCGGGC----EEEE----TTE--ECCTTSBHHHHTC
T ss_pred EEEEeCCC---CcHHHHHHHHHHHhCcChhHE----EEEE----CCE--ECCCCCcHHHCCC
Confidence 45778888 999999999999999985333 4554 476 8999999988643
No 113
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=78.98 E-value=2.2 Score=32.33 Aligned_cols=48 Identities=6% Similarity=0.111 Sum_probs=38.9
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
..|.+... .||..|++.++.+.+++...+ -+|| .|+ .|.++.||.+..
T Consensus 34 ~~l~v~~~---~tv~~lK~~i~~~~gip~~~q----rLif----~Gk--~L~d~~tl~dy~ 81 (97)
T 1wyw_B 34 IHFKVKMT---THLKKLKESYCQRQGVPMNSL----RFLF----EGQ--RIADNHTPKELG 81 (97)
T ss_dssp EEEEEETT---SCTHHHHHHHHHHHTCCGGGE----EEEE----TTE--ECCTTCCHHHHT
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCCChhhE----EEEE----CCe--EcCCCCCHHHCC
Confidence 56888888 999999999999999985433 3444 587 899999999864
No 114
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=78.72 E-value=1.9 Score=32.00 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=42.4
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~ 317 (321)
-.|.++.. .||..||+-|+.+.+++.... -++| .|. +|.++.||.+... +...-+.|..+
T Consensus 22 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~q----rL~~----~Gk--~L~D~~tL~~~gi---~~g~~i~l~~r 81 (88)
T 1sif_A 22 FTVEMEPS---DTIENLKAKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYNI---QKESTLHLVLR 81 (88)
T ss_dssp EEEECCTT---SBHHHHHHHHHHHHCCCGGGC----EEEE----TTE--ECCTTSBSGGGTC---CTTCEEEEEC-
T ss_pred EEEEECCC---ChHHHHHHHHHHHHCcChhhE----EEEE----CCE--ECCCCCcHHHcCC---CCCCEEEEEEe
Confidence 45788888 999999999999999985333 3454 476 8999999987543 23344444444
No 115
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.72 E-value=3 Score=30.63 Aligned_cols=61 Identities=8% Similarity=0.015 Sum_probs=43.3
Q ss_pred CeE-EcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 242 DKI-STVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 242 ryi-~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
-.| ..+.. .||..||+.|+.+.+++.... -++| .|. +|.++.||.+.... ...-+.|..+.
T Consensus 21 ~~l~~v~~~---~tV~~lK~~i~~~~gip~~~q----rL~~----~gk--~L~d~~tL~~~~i~---~g~~i~l~~~~ 82 (89)
T 1wy8_A 21 CTIEDVSRK---ATIEELRERVWALFDVRPECQ----RLFY----RGK--QLENGYTLFDYDVG---LNDIIQLLVRP 82 (89)
T ss_dssp EEEEEECTT---CBHHHHHHHHHHHSCCCTTTE----EEEE----TTE--ECCSSSBHHHHTCC---TTCEEEEEECC
T ss_pred EEEEecCCC---CCHHHHHHHHHHHHCcChhhE----EEEE----CCe--ECCCCCCHHHCCCC---CCCEEEEEEeC
Confidence 346 48888 999999999999999985333 4554 476 89999999886432 34445555543
No 116
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=78.43 E-value=2.3 Score=31.44 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=43.5
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
..|..+.. .||..||+.|+.+.+++.... -++| .|. +|.++.||.+... +...-+.|.++.
T Consensus 17 ~~~~v~~~---~TV~~LK~~I~~~~gip~~~q----rL~~----~Gk--~L~D~~tL~~~~I---~~g~~i~l~~~~ 77 (88)
T 2hj8_A 17 STYEVRLT---QTVAHLKQQVSGLEGVQDDLF----WLTF----EGK--PLEDQLPLGEYGL---KPLSTVFMNLRL 77 (88)
T ss_dssp EEEEEESS---SBHHHHHHHHHHHTCSCTTTE----EEES----SSS--CCCTTSBHHHHHC---STTCEEEEEEC-
T ss_pred EEEEECCC---CcHHHHHHHHHHHhCCChhHE----EEEE----CCE--ECCCCCcHHHcCC---CCCCEEEEEEEc
Confidence 45777888 999999999999999985333 3543 466 8999999988654 334445555443
No 117
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=76.72 E-value=2.2 Score=32.14 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=37.4
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
..|..+.. .||..||+.|+.+.+++...+ -++| .|. +|.++.||.+..
T Consensus 13 ~~~~v~~~---~TV~~LK~~I~~~~gi~~~~q----rL~~----~Gk--~L~D~~tL~~~g 60 (98)
T 1yx5_B 13 ITLEVEPS---DTIENVKAKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYN 60 (98)
T ss_dssp EEEECCTT---CBHHHHHHHHHHHTCCCGGGE----EEEE----TTE--ECCTTSBTGGGT
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCcChhhE----EEEE----CCE--ECCCCCCHHHcC
Confidence 45778888 999999999999999985333 3444 476 889999998754
No 118
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=76.46 E-value=3.8 Score=31.51 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=38.4
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHD 303 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~ 303 (321)
-.|..... .||..||+.|+.+.+++.... -++| .|. .|.++.||.+...
T Consensus 36 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~q----rLi~----~Gk--~L~D~~tL~~ygI 84 (106)
T 1ttn_A 36 LKLVVRST---DTVFHMKRRLHAAEGVEPGSQ----RWFF----SGR--PLTDKMKFEELKI 84 (106)
T ss_dssp EEEEECTT---SHHHHHHHHHHHTTCCCSTTC----EEEE----TTE--ECCTTSHHHHCCC
T ss_pred EEEEeCCC---CcHHHHHHHHHHHHCcCcccE----EEEE----CCE--ECCCCCcHHHcCC
Confidence 45788888 999999999999999985333 4554 477 8999999987643
No 119
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=76.44 E-value=2.6 Score=31.13 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=37.4
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..+.. .||.-||+.|+.+.+++.... -++| .|. +|.++.||.+..
T Consensus 24 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~q----rL~~----~Gk--~L~D~~tL~~~g 71 (85)
T 2kd0_A 24 IPLSVSPD---CTVKDLKSQLQPITNVLPRGQ----KLIF----KGK--VLVETSTLKQSD 71 (85)
T ss_dssp EEEEECTT---SBHHHHHHHHHHHHCCCTTTC----EEEE----TTE--ECCTTCBTTTTT
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCcChHHE----EEEE----CCe--ECCCcCCHHHCC
Confidence 34778888 999999999999999985333 3454 476 899999998753
No 120
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=76.33 E-value=1.9 Score=33.03 Aligned_cols=60 Identities=12% Similarity=0.253 Sum_probs=42.9
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~ 317 (321)
-.|.++.. .||..||+.|+.+.+++...+ -+|| .|. +|.++.||.+... +...-+.|..+
T Consensus 37 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~q----rLi~----~Gk--~L~D~~tL~~~gI---~~g~~I~l~~~ 96 (101)
T 2klc_A 37 EEFAVPEN---SSVQQFKEEISKRFKSHTDQL----VLIF----AGK--ILKDQDTLSQHGI---HDGLTVHLVIK 96 (101)
T ss_dssp EEEEECSC---CCHHHHHHHHHHHHTCCGGGE----EEEE----TTE--EECTTCCTGGGTC---CTTCEEEEEEC
T ss_pred EEEEECCC---CCHHHHHHHHHHHHCcChhhE----EEEE----CCE--ECCCcCcHHHcCC---CCCCEEEEEEc
Confidence 45788888 999999999999999985333 3554 477 8899999988643 23344444444
No 121
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=76.03 E-value=3.2 Score=30.63 Aligned_cols=49 Identities=8% Similarity=-0.031 Sum_probs=38.3
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceee-CCCCchHHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFIL-LPGNQSLRQIHD 303 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~-L~~~~TL~~V~~ 303 (321)
-.|..+.. .||..||.-|+.+.+++..+ +-+|| .|. + |.++.||.+...
T Consensus 23 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~----QrLi~----~Gk--~lL~D~~tL~~y~I 72 (84)
T 2kk8_A 23 FELEVDYR---DTLLVVKQKIERSQHIPVSK----QTLIV----DGI--VILREDLTVEQCQI 72 (84)
T ss_dssp EEEEECTT---SBHHHHHHHHHHHHTCCGGG----EEEEE----TTE--ECCCSSSBHHHHTC
T ss_pred EEEEECCC---ChHHHHHHHHHHHHCcChHH----EEEEE----CCE--EecCCcCCHHHcCC
Confidence 44778888 99999999999999998533 34554 476 7 999999988653
No 122
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=75.63 E-value=2.3 Score=32.63 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=37.7
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..+.. .||..||+.|+.+.+++....- ++| .|. +|.++.||.+..
T Consensus 40 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~Qr----Li~----~Gk--~L~D~~tL~~~g 87 (101)
T 3m63_B 40 WEVNVAPE---STVLQFKEAINKANGIPVANQR----LIY----SGK--ILKDDQTVESYH 87 (101)
T ss_dssp CCBCCCTT---SBHHHHHHHHHHHHSCCSTTCC----EEE----TTE--ECCTTSBTTTTT
T ss_pred EEEEeCCC---CCHHHHHHHHHHHHCcChHHEE----EEE----CCE--ECCCcCcHHHCC
Confidence 44677888 9999999999999999854433 554 577 899999998753
No 123
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=75.18 E-value=3.6 Score=31.05 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=38.1
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCC-chHHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGN-QSLRQIHD 303 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~-~TL~~V~~ 303 (321)
-.|..+.. .||..||+.|+.+.+++.... -+|| .|. +|.++ .||.+...
T Consensus 27 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~Q----rLi~----~Gk--~L~D~~~tL~~ygI 76 (94)
T 2kan_A 27 FTVEVDRT---ETVSSLKDKIHIVENTPIKRM----QLYY----SGI--ELADDYRNLNEYGI 76 (94)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHSSSCTTTE----EEEE----TTE--EECCTTSBHHHHTC
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCcCHHHE----EEEE----CCE--ECCCCcccHHHCCC
Confidence 45778888 999999999999999985333 4554 476 88888 99988653
No 124
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=75.09 E-value=2.3 Score=33.17 Aligned_cols=60 Identities=10% Similarity=0.154 Sum_probs=43.9
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~ 317 (321)
-.|..+.. .||..||+.|+.+.+++.... -++| .|. +|.++.||.+.. .+.+.-+.|..|
T Consensus 48 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~Q----rLi~----~Gk--~L~D~~tL~~~g---I~~gs~I~l~~r 107 (111)
T 3vdz_A 48 ITLEVEPS---DTIENVKAKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYN---IQKESTLHLVLR 107 (111)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHHCCCGGGE----EEEE----TTE--ECCTTSBTTTTT---CCTTCEEEEEEC
T ss_pred EEEEeCCC---CCHHHHHHHHHHHhCCChHHE----EEEE----CCE--ECCCCCcHHHCC---CCCCCEEEEEEe
Confidence 56888888 999999999999999985333 4554 577 899999998743 344444555444
No 125
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=74.94 E-value=3.2 Score=31.74 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=38.0
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHD 303 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~ 303 (321)
.|..+.. .||..||+.|+.+.+++... +-+|| .|. +|.++.||.+...
T Consensus 35 ~l~v~~~---~TV~~LK~~I~~~~gip~~~----QrLi~----~Gk--~L~D~~tL~~ygI 82 (100)
T 1yqb_A 35 DFSVTDT---CTIQQLKEEISQRFKAHPDQ----LVLIF----AGK--ILKDPDSLAQCGV 82 (100)
T ss_dssp EEEEETT---CBHHHHHHHHHHHHTCCGGG----EEEEE----TTE--ECCTTSBHHHHTC
T ss_pred EEEECCC---CcHHHHHHHHHHHHCcChhh----EEEEE----CCE--ECCCcCcHHHCCC
Confidence 5777888 99999999999999998533 34554 476 8999999998653
No 126
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.91 E-value=3.6 Score=33.01 Aligned_cols=47 Identities=21% Similarity=0.126 Sum_probs=37.9
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHH
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHD 303 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~ 303 (321)
|-.+.. +||..||..|+.+++++...+. +|| +|. +|.++-||++...
T Consensus 31 v~v~~d---~TV~dLKe~ls~~~~iP~e~qr----LIy----~GK--iLKD~eTL~~~gI 77 (118)
T 2daf_A 31 IPFKVD---TILKYLKDHFSHLLGIPHSVLQ----IRY----SGK--ILKNNETLVQHGV 77 (118)
T ss_dssp EEECSS---SCSHHHHHHHHHHHTCCTTTEE----EEE----TTE--EECSSCCHHHHSC
T ss_pred EEeCCC---CcHHHHHHHHHhhhCCChHHEE----EEE----CCe--EcCCcchHHHcCC
Confidence 446667 9999999999999999864444 565 688 9999999998653
No 127
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=73.85 E-value=3.6 Score=32.97 Aligned_cols=50 Identities=16% Similarity=0.030 Sum_probs=41.0
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHh
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDK 304 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~ 304 (321)
-+|.+... .||..||.-|+.+.+++.. .+.+|| +|. +|.++.||.+-+..
T Consensus 14 i~lev~~s---dTV~~lK~kI~~~egIP~~----qQrLi~----~Gk--~LeD~~TLsdy~I~ 63 (118)
T 2fnj_B 14 IFTDAKES---STVFELKRIVEGILKRPPE----EQRLYK----DDQ--LLDDGKTLGECGFT 63 (118)
T ss_dssp EEEEEETT---SBHHHHHHHHHHHHCCCGG----GEEEEE----TTE--ECCTTSBHHHHTCC
T ss_pred EEEEeCCc---ChHHHHHHHHHHHhCCCHH----HeEEEE----CCe--ECCCCCCHHHcCcc
Confidence 57888899 9999999999999999852 345665 587 99999999986544
No 128
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=73.71 E-value=2.9 Score=29.84 Aligned_cols=59 Identities=8% Similarity=0.126 Sum_probs=42.0
Q ss_pred eEE-cCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEee
Q psy17011 243 KIS-TVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317 (321)
Q Consensus 243 yi~-~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~ 317 (321)
.|. .+.. .||..||+-|+.+.+++.... -++| .|. +|.++.||.+... +...-+.|..|
T Consensus 17 ~l~~v~~~---~tv~~lK~~i~~~~gip~~~q----rL~~----~g~--~L~d~~tL~~~~i---~~g~~i~l~~r 76 (78)
T 2faz_A 17 TVDSLSRL---TKVEELRRKIQELFHVEPGLQ----RLFY----RGK--QMEDGHTLFDYEV---RLNDTIQLLVR 76 (78)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHHCCCGGGE----EEEE----TTE--ECCTTCBTTTTTC---CTTCEEEEEEC
T ss_pred EEeccCCC---CCHHHHHHHHHHHHCcChhhE----EEEE----CCE--ECCCCCCHHHcCC---CCCCEEEEEEe
Confidence 477 8888 999999999999999985333 3554 476 8999999987543 23444555444
No 129
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.56 E-value=3.1 Score=33.33 Aligned_cols=49 Identities=14% Similarity=0.303 Sum_probs=38.2
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHD 303 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~ 303 (321)
-.|..+.+ .||..||+.|+.+.+++...+ -+|| .|. +|.++.||.+...
T Consensus 44 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~Q----rLi~----~Gk--~L~D~~tL~dygI 92 (125)
T 1j8c_A 44 EEFAVPEN---SSVQQFKEAISKRFKSQTDQL----VLIF----AGK--ILKDQDTLIQHGI 92 (125)
T ss_dssp EEEEECTT---CCHHHHHHHHHHHHCSCSSSE----EEEE----TTE--EESTTSCGGGTTC
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCcCcceE----EEEE----CCE--EcCCCCCHHHcCC
Confidence 45778888 999999999999999985333 3554 476 8899999988643
No 130
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=72.55 E-value=2.6 Score=32.61 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=37.7
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..... .||..||+.|+.+.+++..+ +-+|| .|. +|.++.||.+..
T Consensus 14 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~----QrLi~----~Gk--~L~D~~tL~~~~ 61 (106)
T 3m62_B 14 VPLDLEPS---NTILETKTKLAQSISCEESQ----IKLIY----SGK--VLQDSKTVSECG 61 (106)
T ss_dssp EEECCCTT---SBHHHHHHHHHHTTTSCGGG----CEEEE----TTE--ECCTTSBTTTTT
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCCChhh----EEEEE----CCE--ECCCcCCHHHcC
Confidence 35677778 99999999999999987533 34555 577 899999998854
No 131
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=69.82 E-value=3.9 Score=31.72 Aligned_cols=60 Identities=10% Similarity=0.143 Sum_probs=42.4
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~ 317 (321)
..|..+.. .||..||+-|+.+.+++...+ -++| .|. +|.++.||.+... +...-+.|..|
T Consensus 48 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~q----rLi~----~Gk--~L~D~~tL~~~gI---~~gs~I~l~~r 107 (111)
T 2ojr_A 48 ITLEVEPS---DTIENVKAKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYNI---QKESTLHLVLR 107 (111)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHHCCCTTTE----EEEE----TTE--ECCSSCBTTTTTC---CTTCEEEEEEC
T ss_pred EEEEeCCC---CCHHHHHHHHHHHHCcCcccE----EEEE----CCE--ECCCCCcHHHcCC---CCCCEEEEEEe
Confidence 45778888 999999999999999985333 3444 476 8899999987543 23344444444
No 132
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=69.16 E-value=4.5 Score=29.24 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=40.6
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHh---ccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRL---RLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl---~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
-.|..+.. .||..||+.|+.++ +++.. .+-+|| .|. +|.++.||.+... +...-+.|..+.
T Consensus 18 ~~~~v~~~---~TV~~lK~~i~~~~~~~gip~~----~qrLi~----~Gk--~L~D~~tL~~~~i---~~g~~i~l~~~~ 81 (85)
T 2wyq_A 18 FKIRMEPD---ETVKVLKEKIEAEKGRDAFPVA----GQKLIY----AGK--ILSDDVPIRDYRI---DEKNFVVVMVTK 81 (85)
T ss_dssp EEEEECTT---SBHHHHHHHHHHHHCTTTCCGG----GEEEEE----TTE--ECCTTSBGGGGCC---CTTSEEEEEEC-
T ss_pred EEEEECCC---CCHHHHHHHHHhhccccCCCHH----HeEEEE----CCE--ECcCCCCHHHcCC---CCCCEEEEEEcC
Confidence 34778888 99999999999984 56532 334554 477 8999999987542 233344444443
No 133
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=67.60 E-value=7.1 Score=28.96 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=34.9
Q ss_pred EcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEE---EeecCCCceeeCCCCchHHHHH
Q psy17011 245 STVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGI---YVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 245 ~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~i---yi~~~~~~~~~L~~~~TL~~V~ 302 (321)
..+.. +||..||.-|+.+.+++.... -++ | .|. +|.++.||.+..
T Consensus 23 ~v~~~---~TV~~lK~~I~~~~gip~~~Q----kLi~~k~----~Gk--~L~D~~~L~~~~ 70 (90)
T 1v5t_A 23 TLSED---DTVLDLKQFLKTLTGVLPERQ----KLLGLKV----KGK--PAENDVKLGALK 70 (90)
T ss_dssp SCCSS---SBHHHHHHHHHHHTCCCTTTC----EEESCEE----TTE--ECCTTSBHHHHT
T ss_pred EeCCC---CCHHHHHHHHHHHHCcCHHHe----EEEeecc----CCc--CcCCCCCHHHcC
Confidence 56777 999999999999999985333 354 3 465 899999998854
No 134
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=70.77 E-value=1.1 Score=31.88 Aligned_cols=48 Identities=8% Similarity=0.179 Sum_probs=36.5
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHD 303 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~ 303 (321)
.|..+.. .||..||+.|+.+.+++....- ++| .|. .|.++.||.+...
T Consensus 14 ~~~v~~~---~tV~~lK~~i~~~~gi~~~~qr----L~~----~gk--~L~d~~tL~~~~i 61 (76)
T 3b1l_X 14 PVEVDSD---TSILQLKEVVAKQQGVPADQLR----VIF----AGK--ELPNHLTVQNCDL 61 (76)
Confidence 4677778 9999999999999998854333 443 466 8888999987643
No 135
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=67.40 E-value=5.9 Score=30.48 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=32.8
Q ss_pred chhhhHHHHHHHHh--ccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHH
Q psy17011 253 GEVDHLTKYLTMRL--RLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHD 303 (321)
Q Consensus 253 aTV~HL~KyLa~rl--~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~ 303 (321)
.||..||+.|+.+. +++.... +-+|| .|. +|.++.||.+...
T Consensus 45 ~TV~~LK~~i~~~~~~gip~~~~---qrLi~----~Gk--~L~D~~tL~~y~i 88 (107)
T 1x1m_A 45 YSISFLKQLIAGKLQESVPDPEL---IDLIY----CGR--KLKDDQTLDFYGI 88 (107)
T ss_dssp CBHHHHHHHHHHHCTTTCCCSSS---EEEEE----TTE--ECCTTCBHHHHTC
T ss_pred CCHHHHHHHHHHHhccCCChhhc---EEEEE----CCe--ECCCCCcHHHcCC
Confidence 89999999999999 8885330 34554 477 8999999998653
No 136
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=67.18 E-value=6.9 Score=30.47 Aligned_cols=60 Identities=8% Similarity=0.015 Sum_probs=42.8
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYS 317 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~ 317 (321)
--|.++.. .||..||..|+.+.+++... +-+|| .|. +|.++.||.+.... ...-|.|..+
T Consensus 48 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~----QrL~~----~Gk--~L~D~~tL~~y~i~---~g~~i~lv~r 107 (115)
T 1we7_A 48 LVFTLPLT---DQVSVIKVKIHEATGMPAGK----QKLQY----EGI--FIKDSNSLAYYNMA---SGAVIHLALK 107 (115)
T ss_dssp EEEEECSC---SBTHHHHHHHHHHSSCCTTT----EEEEE----TTE--EECTTSBHHHHTCC---SSCEEEEEEC
T ss_pred EEEEECCC---CCHHHHHHHHHHHHCCChHH----EEEEE----CCE--ECCCCCCHHHCCCC---CCCEEEEEEE
Confidence 44788888 99999999999999988533 34555 476 88999999876432 3334444444
No 137
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=66.87 E-value=7.7 Score=29.51 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=35.7
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCC-chHHHHH
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGN-QSLRQIH 302 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~-~TL~~V~ 302 (321)
|..+.. .||..||..|+.+.+++..+.- +|| .|. +|.++ .||.+..
T Consensus 26 i~v~~~---~TV~~LK~~I~~~~gip~~~qr----L~~----~gk--~L~D~~~tL~~yg 72 (102)
T 1v5o_A 26 LQVNPD---FELSNFRVLCELESGVPAEEAQ----IVY----MEQ--LLTDDHCSLGSYG 72 (102)
T ss_dssp EEECTT---CBHHHHHHHHHHHTCCCGGGBC----EEE----TTE--EECCSSSBHHHHT
T ss_pred EEcCCC---CCHHHHHHHHHHHHCcChHHeE----EEE----CCE--ECCCCcccHHHCC
Confidence 778888 9999999999999999854333 454 466 78776 6998764
No 138
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=66.58 E-value=7.6 Score=29.75 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=36.5
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHh-ccCCCCcCCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRL-RLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl-~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
.-|.++.. .||..||.-|+.++ +.+. .+.+-+|| .|. +|.++.||.+.
T Consensus 38 i~l~v~~~---~TV~~LK~~I~~~~~g~pp---~~~QrLIy----~Gk--~L~D~~tL~~y 86 (99)
T 2kdb_A 38 QTISCFLN---WTVGKLKTHLSNVYPSKPL---TKDQRLVY----SGR--LLPDHLQLKDI 86 (99)
T ss_dssp EEEEECTT---SBHHHHHHHHHHHSTTCCC---TTTCCEEE----TTE--EECTTSBTHHH
T ss_pred EEEEcCCC---CHHHHHHHHHHHHhcCCCC---hhhEEEEE----CCE--ECCCCCCHHHH
Confidence 35777888 99999999999986 3432 13345776 587 89999999876
No 139
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=66.24 E-value=4.6 Score=31.64 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=37.4
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..+.. .||..||.-|+.+.+++.... -++| .|. +|.++.||.+..
T Consensus 22 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~q----rLi~----~Gk--~L~D~~tL~~yg 69 (114)
T 2kdi_A 22 ITLEVESS---DTIDNVKSKIQDKEGIPPDQQ----RLIW----AGK--QLEDGRTLSDYN 69 (114)
T ss_dssp EEEECCTT---CBHHHHHHHHHHHHCCCGGGE----EEEE----TTE--ECCTTCBTTTTT
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCcChHHE----EEEE----CCE--ECCCCCcHHHCC
Confidence 45778888 999999999999999985333 3444 476 888899988754
No 140
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=65.73 E-value=7.1 Score=29.21 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=36.0
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHh---ccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRL---RLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl---~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..+.. .||..||+.|+.++ +++... +-+|| .|. +|.++.||.+..
T Consensus 13 ~~~~v~~~---~TV~~LK~~I~~~~~~~gip~~~----qrLi~----~Gk--~L~D~~tL~~yg 63 (95)
T 1uel_A 13 FKIDIDPE---ETVKALKEKIESEKGKDAFPVAG----QKLIY----AGK--ILNDDTALKEYK 63 (95)
T ss_dssp EEEECCTT---SBHHHHHHHHHHHHCTTTCCTTT----EEEEE----TTE--ECCTTSBGGGGT
T ss_pred EEEEECCC---CHHHHHHHHHHhhcccCCCChhh----EEEEE----CCE--ECCCcCcHHHCC
Confidence 35777888 99999999999994 566433 33554 476 899999998764
No 141
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=64.27 E-value=8.1 Score=28.86 Aligned_cols=44 Identities=14% Similarity=0.054 Sum_probs=34.8
Q ss_pred cCCCCCcchhhhHHHHH-HHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 246 TVESATDGEVDHLTKYL-TMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 246 ~sa~~~~aTV~HL~KyL-a~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
.+.. .||..||..| +.+-+++..+ +-+|| .|. +|.++.||.+.+
T Consensus 20 v~~~---~TV~~lK~~I~~~~~gip~~~----QrLi~----~Gk--~L~D~~tL~~y~ 64 (87)
T 2lxa_A 20 FSPS---DTILQIKQHLISEEKASHISE----IKLLL----KGK--VLHDNLFLSDLK 64 (87)
T ss_dssp CCTT---CBHHHHHHHHHHTTSCSSSTT----EEEEE----TTE--ECCTTCBHHHHC
T ss_pred CCCC---CcHHHHHHHHHHHhcCCChHH----EEEEE----CCE--ECcCcCCHHHcC
Confidence 4477 9999999999 8888887533 34665 587 999999999754
No 142
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=63.29 E-value=5.6 Score=31.13 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=41.1
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEE
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVY 315 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~ 315 (321)
--|...+. .||.+||.-|..+++++....- +.+ +++ +|.++.||.+- .-.+....+.||
T Consensus 39 i~l~V~ps---~TV~~LK~~I~~k~Gipp~~QR---li~-----ggk--ll~D~~TL~~y--gI~~~G~t~hL~ 97 (105)
T 4dbg_A 39 IWLTVRPD---MTVASLKDMVFLDYGFPPVLQQ---WVI-----GQR--LARDQETLHSH--GVRQNGDSAYLY 97 (105)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHHCCCGGGEE---EEE-----TTE--EECTTCBTGGG--TCCSTTCEEEEE
T ss_pred EEEEECCc---ChHHHHHHHHHHHhCCCHHHEE---Eec-----cCe--EccCcCcHHHc--CCCCCCCEEEEE
Confidence 45666778 9999999999999999963332 444 577 88899999762 112344455444
No 143
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=63.16 E-value=5.1 Score=32.06 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=46.8
Q ss_pred CCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhh--cCCCCCeEEEeee
Q psy17011 241 DDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKY--WKSEKPLEVYYSW 318 (321)
Q Consensus 241 ~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~--Wk~~~Pl~l~Y~~ 318 (321)
+-+|-+... .||..||+-|.-+.+++.. .+-+|| +|+ +|.++-||.+-+..- =|--.|-.|+..+
T Consensus 13 TI~ldve~s---dTV~~lK~kI~~~~giPp~----qQrLI~----~Gk--~LeD~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 13 TIFTDAKES---STVFELKRIVEGILKRPPD----EQRLYK----DDQ--LLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp EEEEEEETT---SBHHHHHHHHHHHHCCCGG----GEEEEE----TTE--ECCTTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred EEEEEcCCC---ChHHHHHHHHHHHHCCCHH----HeEEEe----CCe--ECCCcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 457778888 9999999999999999853 345775 577 999999999844322 1123365555554
Q ss_pred c
Q psy17011 319 K 319 (321)
Q Consensus 319 ~ 319 (321)
+
T Consensus 80 r 80 (118)
T 4ajy_B 80 R 80 (118)
T ss_dssp C
T ss_pred e
Confidence 3
No 144
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=62.74 E-value=7.5 Score=32.64 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=38.4
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..... .||..||+-|+.+.+++..+ |-++| .|. +|.++.||.+..
T Consensus 13 ~~l~v~~~---~TV~~LK~~I~~~~gip~~~----QrLi~----~Gk--~L~D~~tL~~y~ 60 (169)
T 3l0w_B 13 ITLEVESS---DTIDNVKSKIQDKEGIPPDQ----QRLIF----AGK--QLEDGRTLSDYN 60 (169)
T ss_dssp EEEECCTT---CBHHHHHHHHHHHHCCCTTT----EEEEE----TTE--ECCTTSBGGGGT
T ss_pred EEEEeCCC---CCHHHHHHHHHHHHCcCHHH----EEEEE----CCc--cccCcCcHHHcC
Confidence 45788888 99999999999999998533 34554 577 899999998854
No 145
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=62.65 E-value=15 Score=26.69 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=40.6
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-+++.... .++..|.+..+.|.+++...+- |++ +|+ .|.++.|+.+..
T Consensus 21 i~~~i~~~---t~l~kl~~~y~~~~gi~~~~~r---f~f-----dG~--~l~~~~Tp~~l~ 68 (79)
T 3a4r_A 21 LEISLSPD---SPLKVLMSHYEEAMGLSGHKLS---FFF-----DGT--KLSGKELPADLG 68 (79)
T ss_dssp EEEEECTT---SCHHHHHHHHHHHHTCTTCCCE---EEE-----TTE--ECCSCCCHHHHT
T ss_pred EEEEECCC---ChHHHHHHHHHHHhCCCcccEE---EEE-----CCE--EcCCCCCHHHcC
Confidence 57888888 9999999999999999865555 776 688 899999998864
No 146
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=61.40 E-value=16 Score=27.37 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=46.9
Q ss_pred CCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCC--CCCeEEE
Q psy17011 241 DDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKS--EKPLEVY 315 (321)
Q Consensus 241 ~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~--~~Pl~l~ 315 (321)
+--|+.|.. ++...|.--|+.||.+....+. +-|=.+.+++++ +.++-.|+.+ |++ |.=|.|+
T Consensus 15 tvairvp~~---~~y~~L~~~l~~kL~l~~~~~~----LsYk~~~s~~~v-i~~d~dl~~a----w~~~~n~~LtL~ 79 (83)
T 1oey_A 15 TVVMKTQPG---LPYSQVRDMVSKKLELRLEHTK----LSYRPRDSNELV-PLSEDSMKDA----WGQVKNYCLTLW 79 (83)
T ss_dssp EEEEEECTT---CCHHHHHHHHHHHTTCCGGGCC----EEECCTTCSSCE-ECCTTTHHHH----HTTCBTTEEEEE
T ss_pred EEEEECCCC---CCHHHHHHHHHHHhCCCcceeE----EEeeCCCCCCee-ccChHHHHHH----HHhccCCcEEEE
Confidence 467899999 9999999999999999754443 447776678887 6667788766 654 4436655
No 147
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=60.81 E-value=13 Score=27.33 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=30.5
Q ss_pred chhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCC-CchHHHHH
Q psy17011 253 GEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPG-NQSLRQIH 302 (321)
Q Consensus 253 aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~-~~TL~~V~ 302 (321)
+||..||+-|+.+.+++.... -+|| .|. +|.+ +.||.+..
T Consensus 32 ~TV~~LK~~i~~~~gip~~~q----rL~~----~Gk--~L~D~~~~L~~~~ 72 (92)
T 1wxv_A 32 PVVQDLAQVVEEVIGVPQSFQ----KLIF----KGK--SLKEMETPLSALG 72 (92)
T ss_dssp CBHHHHHHHHHHHTCCCTTTC----EEEE----TTE--EECCSSSBHHHHT
T ss_pred CcHHHHHHHHHHHHCcCHHHE----EEEE----CCe--ecCCCcccHHHCC
Confidence 999999999999999985333 3554 466 7777 66898764
No 148
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=60.17 E-value=7.3 Score=31.77 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=38.2
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..... .||..||+-|+.+.+++... +.++| .|. +|.++.||.+.+
T Consensus 94 ~~~~v~~~---~tV~~lK~~i~~~~gip~~~----q~L~~----~G~--~L~d~~tL~~y~ 141 (159)
T 3rt3_B 94 STYEVRLT---QTVAHLKQQVSGLEGVQDDL----FWLTF----EGK--PLEDQLPLGEYG 141 (159)
T ss_dssp EEEEECTT---SBHHHHHHHHHHHHTCCGGG----EEEEE----TTE--ECCTTSBGGGGT
T ss_pred EEEEeCCC---CCHHHHHHHHHHHHCCCHHH----EEEEE----CCe--ecCCCCCHHHcC
Confidence 45778888 99999999999999998533 34555 577 899999998754
No 149
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=60.07 E-value=17 Score=34.65 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=57.1
Q ss_pred CCeEEcCCCCCcchhhhHHHHHH--HHhccCCCCcCCcceEEEeec-CCCceeeCCCCchHHHHHHhhcC--CCCCeEEE
Q psy17011 241 DDKISTVESATDGEVDHLTKYLT--MRLRLEGSDICDSNFGIYVSP-SSNNFILLPGNQSLRQIHDKYWK--SEKPLEVY 315 (321)
Q Consensus 241 ~ryi~~sa~~~~aTV~HL~KyLa--~rl~l~~~~~~~~~~~iyi~~-~~~~~~~L~~~~TL~~V~~~~Wk--~~~Pl~l~ 315 (321)
.+=|+|-.. .||..+-.-|+ .|+|+..... .-|.++... ..+++..|..+.+|.+|..+||. .+.+..|+
T Consensus 39 ~k~v~~d~~---ttV~dVi~~i~~~~kiG~~i~~~--~~FgL~~~~~~~~~~~wL~~~~~l~~v~~k~~~~~~~~~~~~~ 113 (392)
T 4eku_A 39 FKLVKCTVQ---TEIREIITSILLSGRIGPNIRLA--ECYGLRLKHMKSDEIHWLHPQMTVGEVQDKYECLHVEAEWRYD 113 (392)
T ss_dssp EEEEEEETT---CBHHHHHHHHHHTTTTCSSCCCG--GGEEEEEEESSSCCEEEECTTSBHHHHHHHSTTTSCGGGEEEE
T ss_pred eEEEEeCCC---CcHHHHHHHHHHHhhcCCCcCcc--ceEEEEEEECCCCceEECCCCCcHHHHHhhhhhccCCCceEEE
Confidence 477999999 99999999998 6888753222 136666543 34677799999999999999986 34688899
Q ss_pred eeec
Q psy17011 316 YSWK 319 (321)
Q Consensus 316 Y~~~ 319 (321)
||++
T Consensus 114 fRvr 117 (392)
T 4eku_A 114 LQIR 117 (392)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8875
No 150
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=59.56 E-value=10 Score=39.58 Aligned_cols=70 Identities=20% Similarity=0.326 Sum_probs=47.5
Q ss_pred CCcccccccccCcccc---------eecCCCCCcc--------------------cHhHHHHHHhc-------CCCCCCC
Q psy17011 42 HSELMCPICLDMLKKT---------MTTKECLHRF--------------------CSDCIITALRS-------GNKECPT 85 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~P---------vtl~~CgHtF--------------------C~~CI~~~l~~-------~~~~CP~ 85 (321)
.+--+|+-|+.-+.|| +....||.+| |..|-..|-.. ....||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 3567999999999988 3334599877 99999998542 2458999
Q ss_pred ccccccccccCCCChHHHHHHHHHcC
Q psy17011 86 CRKKLVSKRSLRADPNFDLLISKIYP 111 (321)
Q Consensus 86 Cr~~~~~~~~l~~n~~l~~lv~kl~~ 111 (321)
|+=.+.....-.....+...+..+..
T Consensus 189 CGP~l~l~~~~~~~~~i~~aa~~L~~ 214 (761)
T 3vth_A 189 CGPSLSFVGEGCFDDEIKCVAKALKE 214 (761)
T ss_dssp TSCCEEEESSCCCSCHHHHHHHHHHT
T ss_pred cCCeeEEeCCCCchHHHHHHHHHHHc
Confidence 98776422111123456677766654
No 151
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=59.03 E-value=9 Score=33.00 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=38.0
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..+.. .||..||.-|+.+.+++..+. -+|| .|. +|.++.||.+..
T Consensus 118 ~~l~V~~s---~TV~~LK~kI~~~~gIp~~~Q----rLi~----~Gk--~L~D~~tL~dyg 165 (189)
T 3q3f_A 118 ITLEVEPS---DTIENVKAKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYN 165 (189)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHHCCCGGGC----CEEE----TTE--ECCTTCBGGGGT
T ss_pred EEEEeCCC---CcHHHHHHHHHhccCCCHHHE----EEEE----CCE--ECCCCCCHHHCC
Confidence 45777788 999999999999999985433 3444 577 899999998854
No 152
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=58.96 E-value=8.1 Score=30.84 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=37.6
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHD 303 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~ 303 (321)
..+..+.. +||..||+-|+.+.+++.... -++| .|. .|.++.||.+...
T Consensus 13 ~~~~v~~~---~tv~~lK~~i~~~~gip~~~q----~L~~----~g~--~L~d~~tL~~~~i 61 (152)
T 3b08_A 13 ITLEVEPS---DTIENVKAKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYNI 61 (152)
T ss_dssp EEEECCTT---CBHHHHHHHHHHHHCCCGGGE----EEEE----TTE--ECCTTSBTGGGTC
T ss_pred EEEEECCC---CCHHHHHHHHHHHHCcChHHe----EEEE----CCe--ECcCcccHHHhcc
Confidence 45778888 999999999999999985333 3444 466 7889999987643
No 153
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=58.64 E-value=7.7 Score=29.93 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=36.4
Q ss_pred eEEcCC-CCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 243 KISTVE-SATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 243 yi~~sa-~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-|..+. . .||..||..|+.+.+++.... -++| .|. +|.++.||.+..
T Consensus 44 ~l~v~~l~---~TV~~LK~~I~~~~gip~~~Q----rL~~----~Gk--~L~D~~tL~~y~ 91 (111)
T 1we6_A 44 EITVQSLS---ENVGSLKEKIAGEIQIPANKQ----KLSG----KAG--FLKDNMSLAHYN 91 (111)
T ss_dssp EEEESCSS---SBHHHHHHHHHHHTTCCTTTS----EEEC----SSS--BCCTTSBTTTTT
T ss_pred EEEecCCC---CcHHHHHHHHHHHHCCCHHHe----EEEE----CCE--ECCCCCcHHHCC
Confidence 377776 8 999999999999999985333 4554 466 899999998654
No 154
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=57.75 E-value=26 Score=32.91 Aligned_cols=72 Identities=10% Similarity=0.170 Sum_probs=56.2
Q ss_pred CCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeec-CCCceeeCCCCchHHHHHHhhcC--CCCCeEEEee
Q psy17011 241 DDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSP-SSNNFILLPGNQSLRQIHDKYWK--SEKPLEVYYS 317 (321)
Q Consensus 241 ~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~-~~~~~~~L~~~~TL~~V~~~~Wk--~~~Pl~l~Y~ 317 (321)
.+-+++... .||..|=.-++.+++|.. .. -|.++... ..++..-|..+.+|.+|..+||+ ...|+.|+||
T Consensus 23 ~~~~~~~~~---tt~~dl~~~v~~~lgL~~--~~--~FgL~~~~~~~~~~~wL~~~~~l~~~~~k~~~~~~~~~~~l~fR 95 (375)
T 2al6_A 23 ASIIRHGDA---TDVRGIIQKIVDCHKVKN--VA--CYGLRLSHLQSEEVHWLHLDMGVSNVREKFELAHPPEEWKYELR 95 (375)
T ss_dssp EEEEEECTT---CBHHHHHHHHHHHTTCSC--GG--GEEEEEEETTSSCEEEECTTSBHHHHHHHHHTTSCGGGEEEEEE
T ss_pred eEEEEeCCC---CCHHHHHHHHHHHcCCCe--Ee--EEEEEEEEcCCCceEeeCCccchhhhhhhhhcccCCCceEEEEE
Confidence 377888889 999999999999999943 21 25555543 23666689999999999999887 4579999999
Q ss_pred ec
Q psy17011 318 WK 319 (321)
Q Consensus 318 ~~ 319 (321)
++
T Consensus 96 vr 97 (375)
T 2al6_A 96 IR 97 (375)
T ss_dssp EC
T ss_pred EE
Confidence 75
No 155
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=57.50 E-value=8.4 Score=30.73 Aligned_cols=61 Identities=10% Similarity=0.137 Sum_probs=43.8
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeee
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSW 318 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~ 318 (321)
-.+..+.. .||..|++-|+.+.+++.... -++| .|. .|.++.||.+... +...-+.|.+|.
T Consensus 89 ~~~~v~~~---~tv~~lK~~i~~~~gi~~~~q----rL~~----~g~--~L~d~~tL~~~~i---~~~~~i~l~~r~ 149 (152)
T 3b08_A 89 ITLEVEPS---DTIENVKAKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYNI---QKESTLHLVLRL 149 (152)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHHCCCGGGE----EEEE----TTE--ECCTTSBTGGGTC---CTTCEEEEEECC
T ss_pred EEEEeCCC---CcHHHHHHHHHHHhCcChhhE----EEEE----CCE--ECCCCCCHHHcCC---CCCCEEEEEEec
Confidence 45677788 999999999999999985333 3554 477 8999999987643 234455555553
No 156
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=56.92 E-value=6.7 Score=30.71 Aligned_cols=62 Identities=18% Similarity=0.339 Sum_probs=43.6
Q ss_pred ccccCccccccCccCCC-CcccccccccCccc-ceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 26 EAITDNTEIAVSPRSLH-SELMCPICLDMLKK-TMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 26 ~~i~~~~~~~~~~~~l~-~~l~C~IC~~~l~~-Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
..|.++....+..+.++ +-|.|..|...|.. +.... =|..||..|..+.+ ...|..|++++.
T Consensus 11 ~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~cy~~~~---~~~C~~C~~~I~ 74 (126)
T 2xqn_T 11 ELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMV-NDKPVCKPCYVKNH---AVVCQGCHNAID 74 (126)
T ss_dssp SBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEE-TTEEEEHHHHHHHS---CCBCTTTCSBCC
T ss_pred CEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeE-CCEEechHHhCcCc---CccCcccCCcCC
Confidence 34444433444555666 44899999998876 44445 78899999987654 357999999886
No 157
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=56.63 E-value=6.6 Score=30.07 Aligned_cols=45 Identities=13% Similarity=0.038 Sum_probs=34.3
Q ss_pred EcCCCCCcchhhhHHHHH-HHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 245 STVESATDGEVDHLTKYL-TMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 245 ~~sa~~~~aTV~HL~KyL-a~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
.++.. .||..||..| +.+-+++.. .+-+|| .|. +|.++.||.+.+
T Consensus 37 ~v~~~---~TV~~lK~~I~~~~~gip~~----~QrLi~----~Gk--~L~D~~tL~dy~ 82 (98)
T 4a20_A 37 DFSPS---DTILQIKQHLISEEKASHIS----EIKLLL----KGK--VLHDNLFLSDLK 82 (98)
T ss_dssp EECTT---CBHHHHHHHHHHTTSCSCGG----GEEEEE----TTE--EECTTCBGGGSC
T ss_pred ecCCC---ChHHHHHHHHHHHhcCCChh----hEEEEE----CCE--ECcCcCCHHHcC
Confidence 56788 9999999999 766677642 334665 577 899999998854
No 158
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=56.61 E-value=6.8 Score=27.46 Aligned_cols=41 Identities=29% Similarity=0.703 Sum_probs=29.1
Q ss_pred ccccccccCcccc--eecCCCCCcccHhHHHHHHhcCCCCCCCc
Q psy17011 45 LMCPICLDMLKKT--MTTKECLHRFCSDCIITALRSGNKECPTC 86 (321)
Q Consensus 45 l~C~IC~~~l~~P--vtl~~CgHtFC~~CI~~~l~~~~~~CP~C 86 (321)
..|--|+..+.+. ..-+.|++.||..|=. ++.+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHhhccCCcCC
Confidence 3588898888654 3345699999999953 333345789988
No 159
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=55.15 E-value=11 Score=28.20 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=34.2
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
.|..+.. +||..||.-|+.+.+++....- ++| .|. +| ++.||.+..
T Consensus 30 ~i~v~~~---~TV~~LK~~I~~~tgip~~~Qr----L~~----~Gk--~L-dd~tL~~~~ 75 (95)
T 1v86_A 30 DVKVPLD---STGSELKQKIHSITGLPPAMQK----VMY----KGL--VP-EDKTLREIK 75 (95)
T ss_dssp EEEECTT---SBHHHHHHHHHHHHCSCSTTCC----CBS----SSB--CC-SSSBHHHHC
T ss_pred EEEECCC---CcHHHHHHHHHHHHCcCHHHeE----EEE----CCe--eC-CcCcHHHCC
Confidence 4788888 9999999999999999864333 332 365 67 455888754
No 160
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=54.98 E-value=13 Score=26.33 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=39.7
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-+++.... .++..|....+.|.+++...+- |.+ +|+ .|.++.|+.+..
T Consensus 14 v~~~v~~~---t~l~kl~~~y~~~~gi~~~~~r---f~f-----dG~--~l~~~~Tp~~l~ 61 (72)
T 1wm3_A 14 VQFKIKRH---TPLSKLMKAYCERQGLSMRQIR---FRF-----DGQ--PINETDTPAQLE 61 (72)
T ss_dssp EEEEECTT---SCTHHHHHHHHHHHTCCTTTCE---EEE-----TTE--ECCTTCCTTTTT
T ss_pred EEEEECCC---ChHHHHHHHHHHHhCCCcceEE---EEE-----CCE--EcCCCCCHHHcC
Confidence 57788888 9999999999999999865555 776 688 899999987753
No 161
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.43 E-value=8.5 Score=29.05 Aligned_cols=44 Identities=7% Similarity=-0.046 Sum_probs=34.3
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
|..+.. +||..||.-|+.+.+++....- +|| .|. +|.++ ||.+.
T Consensus 22 l~v~~~---~TV~~lK~~I~~~tgip~~~Qk----Li~----~Gk--~L~D~-tL~~~ 65 (96)
T 1wgg_A 22 VELNTD---EPPMVFKAQLFALTGVQPARQK----VMV----KGG--TLKDD-DWGNI 65 (96)
T ss_dssp EEEESS---SCHHHHHHHHHHHTCCCTTTSC----CEE----TTE--ECCSS-CCCSC
T ss_pred EEECCC---CcHHHHHHHHHHHHCcCHHHeE----EEE----CCc--CCCCC-CHHHC
Confidence 788888 9999999999999999864443 444 466 78887 88764
No 162
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=52.93 E-value=8.5 Score=40.24 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=48.8
Q ss_pred CCcccccccccCcccc---------eecCCCCCcc--------------------cHhHHHHHHhc-------CCCCCCC
Q psy17011 42 HSELMCPICLDMLKKT---------MTTKECLHRF--------------------CSDCIITALRS-------GNKECPT 85 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~P---------vtl~~CgHtF--------------------C~~CI~~~l~~-------~~~~CP~ 85 (321)
.+--+|+-|+.-+.+| +....||.+| |..|-..|-.. ....||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 3667999999999988 3344599988 99999998642 2458999
Q ss_pred cccccccc---ccCCCChHHHHHHHHHcC
Q psy17011 86 CRKKLVSK---RSLRADPNFDLLISKIYP 111 (321)
Q Consensus 86 Cr~~~~~~---~~l~~n~~l~~lv~kl~~ 111 (321)
|+=.+... ........+...+..+..
T Consensus 184 CGP~l~l~~~~~~~~~~~~i~~a~~~l~~ 212 (772)
T 4g9i_A 184 CGPSYRLYTSDGQEIYGDPLRKAAELIDK 212 (772)
T ss_dssp TSCCEEEESSSCBCCTTHHHHHHHHHHTT
T ss_pred CCceEEEEcCCCCeechHHHHHHHHHHHc
Confidence 98876421 122234466666666654
No 163
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=52.51 E-value=11 Score=28.08 Aligned_cols=50 Identities=4% Similarity=-0.065 Sum_probs=37.7
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCcee--eCCCCchHHHH
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFI--LLPGNQSLRQI 301 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~--~L~~~~TL~~V 301 (321)
+|.+.. .||..||.-|..+.|++.. .+-+||.... +.|. .|.++.||.+-
T Consensus 19 ~r~~~s---~TI~~lK~ki~~~~Gip~~----~QrLi~~~~~-~~~~g~~l~d~~tL~~Y 70 (86)
T 4b6w_A 19 KRYGLA---QTIESIKENVFTHFATPPE----YMQLQLIDDR-GITIEKNMANDKQLGYY 70 (86)
T ss_dssp EEEETT---SBHHHHHHHHHTTSCCCGG----GEEEEEECTT-SCEEESSCCTTSBGGGG
T ss_pred EEcCcc---CcHHHHHHHHHHHHCCCHH----HEEEEEecCC-CCceeeEcCCCCCHHHC
Confidence 667888 9999999999999999853 3357776543 3443 78899998753
No 164
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.27 E-value=8.3 Score=30.23 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=43.6
Q ss_pred cccCccccccCccCCC-CcccccccccCccc---ceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 27 AITDNTEIAVSPRSLH-SELMCPICLDMLKK---TMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 27 ~i~~~~~~~~~~~~l~-~~l~C~IC~~~l~~---Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.|.+.....+....++ +-|.|..|...|.+ ..... =|..||..|..+.+.. ...|..|..++.
T Consensus 14 ~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~-~g~~yC~~cy~~~f~~-~~~C~~C~~~I~ 80 (122)
T 1m3v_A 14 KIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIRLFGN-SGAGGSGGHMGS 80 (122)
T ss_dssp CCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEE-TTEEECHHHHHHHHCC-CCSSSCSSCCSC
T ss_pred EeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEE-CCeeecHHHHHHHcCC-CCccccCCCCcC
Confidence 3444333344455566 45899999999863 34445 7888999999887752 237999999886
No 165
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=51.69 E-value=3.1 Score=33.24 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=0.0
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCC
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEG 270 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~ 270 (321)
-.|..+.. .||..|+.-|+.+.+++.
T Consensus 13 ~~l~v~~~---~TV~~LK~~I~~~~gip~ 38 (128)
T 3u5e_m 13 ITLEVESS---DTIDNVKSKIQDKEGIPP 38 (128)
T ss_dssp -----------------------------
T ss_pred EEEEeCCC---CCHHHHHHHHHHHhCcCh
Confidence 34667777 999999999999999886
No 166
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=51.15 E-value=17 Score=30.06 Aligned_cols=62 Identities=19% Similarity=0.373 Sum_probs=42.7
Q ss_pred ccccCccccccCccCCC-CcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 26 EAITDNTEIAVSPRSLH-SELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 26 ~~i~~~~~~~~~~~~l~-~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
..|.+.....+..+.++ +-|.|..|...|....... =|..||..|..+.+. ..|..|...+.
T Consensus 14 ~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~-~g~~yC~~~y~~~f~---~~C~~C~~~I~ 76 (169)
T 2rgt_A 14 QHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSR-GESVYCKDDFFKRFG---TKCAACQLGIP 76 (169)
T ss_dssp SBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCEES-SSCEECHHHHHHHHS---CBCTTTCCBCC
T ss_pred CccCCcEEEEECCcEEccccCccCCCCCcCCCCCccc-CCeeeeccccccccc---ccccccccccC
Confidence 34444333334455565 5689999999887654445 688999999887663 46888888775
No 167
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=50.98 E-value=12 Score=30.98 Aligned_cols=48 Identities=8% Similarity=0.151 Sum_probs=38.0
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..+.. .||..||+.|..+.+++... +.++| .|. .|.++.||.+..
T Consensus 33 ~~l~v~~~---~tV~~lK~~I~~~~gip~~~----QrL~~----~g~--~L~d~~tL~~~~ 80 (172)
T 3u30_A 33 ITLEVEPS---DTIENVKAKIQDKEGIPPDQ----QRLIF----AGK--QLEDGRTLSDYN 80 (172)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHHCCCGGG----EEEEE----TTE--ECCTTCBTGGGT
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCcChHH----EEEEE----CCc--cccccCCHhHcC
Confidence 45788888 99999999999999998533 34554 466 899999998864
No 168
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=49.65 E-value=49 Score=33.29 Aligned_cols=72 Identities=10% Similarity=0.159 Sum_probs=57.6
Q ss_pred CCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecC-CCceeeCCCCchHHHHHHhhcC--CCCCeEEEee
Q psy17011 241 DDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPS-SNNFILLPGNQSLRQIHDKYWK--SEKPLEVYYS 317 (321)
Q Consensus 241 ~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~-~~~~~~L~~~~TL~~V~~~~Wk--~~~Pl~l~Y~ 317 (321)
.+=|++..+ .||..|=--++.+++|-. .+ -|.++.... .++..-|+.+.|+..|.++|+. +..|..+++|
T Consensus 23 ~~~v~~~~~---~~~~~i~~~v~~~l~i~~--~~--~fgL~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~r 95 (656)
T 2j0j_A 23 ASIIRHGDA---TDVRGIIQKIVDCHKVKN--VA--CYGLRLSHLQSEEVHWLHLDMGVSNVREKFELAHPPEEWKYELR 95 (656)
T ss_dssp EEEEEECTT---CBHHHHHHHHHHHTTCSC--GG--GEEEEEEESSSCCEEEECTTSBHHHHHHHHTTTSCTTSEEEEEE
T ss_pred eeEEEeCCC---CcHHHHHHHHHHhcCcce--ee--eEEEEEeecccCceeeeCCCCcHHHHHhhhcccCCCcceEEEEE
Confidence 477999999 999999999999999843 11 245544332 4778899999999999999976 5679999999
Q ss_pred ec
Q psy17011 318 WK 319 (321)
Q Consensus 318 ~~ 319 (321)
++
T Consensus 96 vr 97 (656)
T 2j0j_A 96 IR 97 (656)
T ss_dssp EC
T ss_pred EE
Confidence 86
No 169
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=47.65 E-value=0.85 Score=35.40 Aligned_cols=49 Identities=33% Similarity=0.644 Sum_probs=28.8
Q ss_pred cCccCCCCcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 36 VSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 36 ~~~~~l~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
...+..+-++.||.|...+.. . =++.+|..|-..+.. ...||.|.+++.
T Consensus 24 ~~~~~~~M~~~CP~Cq~eL~~----~-g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 24 LVPRGSHMELHCPQCQHVLDQ----D-NGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp -------CCCBCSSSCSBEEE----E-TTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred cccCcccccccCccCCCccee----c-CCEEECccccchhhc--cccCcchhhHHH
Confidence 334444455999999987653 1 234458888554332 357999999875
No 170
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=47.22 E-value=4.1 Score=25.45 Aligned_cols=15 Identities=27% Similarity=0.775 Sum_probs=9.2
Q ss_pred cccccccccCcccce
Q psy17011 44 ELMCPICLDMLKKTM 58 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pv 58 (321)
.+.||+|+..+..+-
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 466777766665553
No 171
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=45.86 E-value=9.3 Score=32.31 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=44.2
Q ss_pred ccccCccccccCccCCC-CcccccccccCccc---ceecCCCCCcccHhHHHHHHhcCCC-CCCCcccccc
Q psy17011 26 EAITDNTEIAVSPRSLH-SELMCPICLDMLKK---TMTTKECLHRFCSDCIITALRSGNK-ECPTCRKKLV 91 (321)
Q Consensus 26 ~~i~~~~~~~~~~~~l~-~~l~C~IC~~~l~~---Pvtl~~CgHtFC~~CI~~~l~~~~~-~CP~Cr~~~~ 91 (321)
..|.+.....+..+.++ +-|.|..|...|.. +.... =|..||..|..+.+. .. .|..|.+.+.
T Consensus 13 ~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~-~g~~yC~~cy~~~~~--~~~~C~~C~~~I~ 80 (188)
T 1rut_X 13 GKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIRLFG--NSGACSACGQSIP 80 (188)
T ss_dssp CBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEE-TTEEECHHHHHHHHS--CCEECTTTCCEEC
T ss_pred CEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEe-CCccccccccccccc--cCCccccCCCccc
Confidence 34444333344455566 45899999998875 55555 688999999987664 22 6999999886
No 172
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=45.85 E-value=20 Score=29.62 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=37.8
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..... .||..||+-|+.+.+++.... .+|| .|. .|.++.||.+..
T Consensus 109 ~~l~v~~~---~tV~~lK~~I~~~~gip~~~q----~L~~----~g~--~L~D~~tL~~y~ 156 (172)
T 3u30_A 109 ITLEVEPS---DTIENVKAKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYN 156 (172)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHHCCCGGGC----CEEE----TTE--ECCTTSBSGGGT
T ss_pred eeEEecCC---CCHHHHHHHHHHHhCCCceeE----EEEE----CCc--cCCCCCcHHHhC
Confidence 56777888 999999999999999985333 3554 476 899999998754
No 173
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=45.08 E-value=4.5 Score=33.63 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=0.0
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-.|..+.. .||..|+.-|+.+.+++..+. -+|| .|. +|.++.||.+..
T Consensus 13 ~~l~V~~~---~TV~~LK~~I~~~~gip~~~Q----rLi~----~Gk--~L~D~~tL~dyg 60 (152)
T 3u5c_f 13 ITLEVESS---DTIDNVKSKIQDKEGIPPDQQ----RLIF----AGK--QLEDGRTLSDYN 60 (152)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEECCC---CCHHHHHHHHHHHhCCCHHHE----EEEE----CCE--EccccCcHHHcC
Confidence 34667778 999999999999999985333 3443 466 788888888765
No 174
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=44.48 E-value=8.4 Score=28.61 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=19.9
Q ss_pred cccccccCcc-----cceecCCCCCcccHhHHHHH
Q psy17011 46 MCPICLDMLK-----KTMTTKECLHRFCSDCIITA 75 (321)
Q Consensus 46 ~C~IC~~~l~-----~Pvtl~~CgHtFC~~CI~~~ 75 (321)
-||-|...+. .+++-+.|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3887777543 23555559999988886654
No 175
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=43.67 E-value=37 Score=29.43 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=38.0
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCC-CchHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPG-NQSLRQI 301 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~-~~TL~~V 301 (321)
..++.|.. .||..|.|.++..++++.. .++-++.-...+.+..|.+ +.||++.
T Consensus 142 ~~~~~Sk~---~ti~~l~~~~~~~~~i~~~----~~~RlW~~~~~~~~~~L~~~~~tl~~~ 195 (217)
T 4a3p_A 142 VTRRFSKA---DTIDTIEKEIRKIFSIPDE----KETRLWNKYMSNTFEPLNKPDSTIQDA 195 (217)
T ss_dssp EEEEECTT---SBHHHHHHHHHHHTTCCTT----SCEEEEEEEETTEEEECCCTTSBHHHH
T ss_pred eEEEEccc---chHHHHHHHHHHHhCCCCC----CceEEEEecCCCCeeecCCCCCCHHHh
Confidence 45777889 9999999999999999842 1244443333355667776 6799875
No 176
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=43.54 E-value=15 Score=27.67 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=39.4
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-+++.-.. .++..|..-.+.|.+++...+- |++ +|+ .|.++.|+.+..
T Consensus 20 i~~~v~~~---t~l~kl~~~y~~~~gi~~~~~r---f~F-----dG~--~l~~~~Tp~dl~ 67 (94)
T 2io1_B 20 VQFKIKRH---TPLSKLMKAYCERQGLSMRQIR---FRF-----DGQ--PINETDTPAQLE 67 (94)
T ss_dssp EEEEEETT---SCTHHHHHHHHHHHTCCGGGEE---EEE-----TTE--ECCTTCCTTTTT
T ss_pred EEEEECCC---CHHHHHHHHHHHHhCCCcccEE---EEE-----CCE--EcCCCCCHHHcC
Confidence 57788888 9999999999999999865444 666 688 899999988764
No 177
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.17 E-value=21 Score=28.16 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=36.2
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccC-CCCc---CCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLE-GSDI---CDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~-~~~~---~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
.-|..... .||..||..|+.+..-+ ...+ .+.+-+|| .|. +|.++.||.+-
T Consensus 29 ~~lev~~s---~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy----~GK--~LeD~~TL~~y 83 (116)
T 1wgh_A 29 KEFLFSPN---DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY----QGR--FLHGNVTLGAL 83 (116)
T ss_dssp EEEEECTT---CBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE----TTE--EECSSCBTTTT
T ss_pred EEEEECCc---CHHHHHHHHHHHhcccccccCCCCChHHEEEEE----CCc--CCCCCCcHHHc
Confidence 45677788 99999999999954322 1111 23456776 587 89999999874
No 178
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=43.12 E-value=34 Score=26.67 Aligned_cols=48 Identities=4% Similarity=0.052 Sum_probs=40.7
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-+++.-.. .++..|.+..+.|.+++...+- |++ +|+ .|.++.|+.+..
T Consensus 39 i~fkVk~~---t~l~kL~~ay~ek~gi~~~~~r---fiF-----dG~--~L~~~~Tp~dl~ 86 (110)
T 2k8h_A 39 MFFRIKSR---TALKKLIDTYCKKQGISRNSVR---FLF-----DGT--PIDETKTPEELG 86 (110)
T ss_dssp EEEEECTT---SSHHHHHHHHHHHHTCCSSSCE---EES-----SSC--BCCSSSHHHHHH
T ss_pred EEEEECCC---ChHHHHHHHHHHHhCCCcccEE---EEE-----CCE--EcCCCCCHHHcC
Confidence 57888888 9999999999999999865555 666 688 899999999875
No 179
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=42.84 E-value=32 Score=27.64 Aligned_cols=49 Identities=10% Similarity=0.052 Sum_probs=36.3
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcC---CcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDIC---DSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~---~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
+..... .||..||.-|+....-+...++ +.+-+|| +|. +|.++.||.+-
T Consensus 32 l~v~ps---dTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy----~GK--~LeD~~TLsdy 83 (126)
T 1se9_A 32 KAFPDA---TTVSALKETVISEWPREKENGPKTVKEVKLIS----AGK--VLENSKTVKDY 83 (126)
T ss_dssp EEECTT---CBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE----TTE--ECCTTSBGGGG
T ss_pred eecCcc---CHHHHHHHHHHhhcccccccCCCChhhEEEEE----CCe--ECcCCCcHHHc
Confidence 677778 9999999999876543332333 3557786 687 99999999973
No 180
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=42.61 E-value=20 Score=26.94 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=39.3
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-+++.... .++..|.+..+.|.+++...+- |++ +|+ .|.++.|+.+..
T Consensus 18 v~~~vk~~---t~l~kl~~~y~~~~gi~~~~~r---f~F-----dG~--~l~~~~Tp~dl~ 65 (91)
T 2io0_B 18 VQFKIKRH---TPLSKLMKAYCERQGLSMRQIR---FRF-----DGQ--PINETDTPAQLE 65 (91)
T ss_dssp EEEEEETT---SCTHHHHHHHHHHTTCCSTTEE---EEE-----TTE--ECCTTCCTTTTT
T ss_pred EEEEECCC---ChHHHHHHHHHHHhCCCcccEE---EEE-----CCE--EcCCCCCHHHcC
Confidence 57788888 9999999999999999865555 776 688 889999987754
No 181
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=42.28 E-value=13 Score=29.19 Aligned_cols=63 Identities=19% Similarity=0.357 Sum_probs=42.6
Q ss_pred cccCccccccCccCCC-CcccccccccCccc---ceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 27 AITDNTEIAVSPRSLH-SELMCPICLDMLKK---TMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 27 ~i~~~~~~~~~~~~l~-~~l~C~IC~~~l~~---Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.|.+.....+..+.++ +-|.|..|...|.. +.... =|..||..|..+.+.. ...|..|.+++.
T Consensus 11 ~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~-~g~~yC~~~y~~~~~~-~~~C~~C~~~I~ 77 (131)
T 2xjy_A 11 NIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYK-LGRKLCRRDYLRLFGQ-DGLCASCDKRIR 77 (131)
T ss_dssp BCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEE-TTEEECHHHHHHHHCC-CEECTTTCCEEC
T ss_pred EeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEE-CCEEeecCchhhhCCC-ccChhhcCCccC
Confidence 3444333334445555 55899999998853 44555 6888999999876642 227999999885
No 182
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=42.26 E-value=16 Score=30.03 Aligned_cols=45 Identities=22% Similarity=0.550 Sum_probs=30.3
Q ss_pred CcccccccccCcccceecCCCCCcccHhHHHHHHh----------cCCCCCCCccc
Q psy17011 43 SELMCPICLDMLKKTMTTKECLHRFCSDCIITALR----------SGNKECPTCRK 88 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~----------~~~~~CP~Cr~ 88 (321)
.+-.|.+|.+-=. =+.-..|-..||..||..-+. .+...||.|..
T Consensus 62 ~~d~C~vC~~GG~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3567888876221 122234999999999996552 35679999964
No 183
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=39.48 E-value=26 Score=28.30 Aligned_cols=51 Identities=16% Similarity=0.022 Sum_probs=38.5
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEE-EeecCCCceeeCCCCchHHHHHHh
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGI-YVSPSSNNFILLPGNQSLRQIHDK 304 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~i-yi~~~~~~~~~L~~~~TL~~V~~~ 304 (321)
-.|..+.. .||..||+-|+.+.+++..+ +-++ | .+|. .|.++.||.+....
T Consensus 15 ~~l~v~~~---~tV~~lK~~I~~~~gip~~~----QrL~~~---~~g~--~L~d~~tL~~y~i~ 66 (159)
T 3rt3_B 15 FQVSLSSS---MSVSELKAQITQKIGVHAFQ----QRLAVH---PSGV--ALQDRVPLASQGLG 66 (159)
T ss_dssp EEEECCTT---CCHHHHHHHHHHHHCCCGGG----EEEEEE---TTCC--BCCTTSCGGGGTCC
T ss_pred EEEEeCCC---CcHHHHHHHHHHHhCCCHHH----EEEEEc---CCCC--CCCCCCCHHHcCCC
Confidence 45778888 99999999999999998522 3444 3 1255 78999999987644
No 184
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.19 E-value=25 Score=27.13 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=40.1
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-+++.-.. .++..|.+..+.|.+++...+- |++ +|+ .|.++.|+.+..
T Consensus 37 i~~kVk~~---t~l~kL~~~y~ek~gi~~~~~r---f~F-----dG~--~l~~~~Tp~dl~ 84 (104)
T 1wz0_A 37 VQFKIKRH---TPLSKLMKAYCERQGLSMRQIR---FRF-----DGQ--PINETDTPAQLE 84 (104)
T ss_dssp EEEEECTT---SCHHHHHHHHHHHHTCCTTTSC---EES-----SSS--BCCTTSCTTTTT
T ss_pred EEEEEcCC---ChHHHHHHHHHHHhCCCcceEE---EEE-----CCE--EcCCCCCHHHcC
Confidence 67888888 9999999999999999865555 776 688 899999987764
No 185
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.91 E-value=17 Score=26.89 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=34.2
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCC-chHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGN-QSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~-~TL~~V~ 302 (321)
..|..... .||..||+.|+.+. .+.+-+|| .|. +|.++ .||.+..
T Consensus 20 ~~~~v~~~---~TV~~LK~~i~~~~-------~~~qrLi~----~Gk--~L~D~~~tL~~y~ 65 (95)
T 1wia_A 20 ELAVARPE---DTVGTLKSKYFPGQ-------ESQMKLIY----QGR--LLQDPARTLSSLN 65 (95)
T ss_dssp EEEEECSS---SBHHHHHHHHSSST-------TTTCEEEE----TTE--ECCCSSCBTTTTT
T ss_pred EEEEECCC---CcHHHHHHHHHhhC-------cCcEEEEE----CCE--EccCCcCCHHHcC
Confidence 45778888 99999999998875 23345665 477 89888 9998754
No 186
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=38.60 E-value=17 Score=30.42 Aligned_cols=61 Identities=20% Similarity=0.378 Sum_probs=41.3
Q ss_pred cccCccccccCccCCC-CcccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 27 AITDNTEIAVSPRSLH-SELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 27 ~i~~~~~~~~~~~~l~-~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.|.+........+.++ .-|.|..|...|....... =|..||..|..+.+ ...|..|+..+.
T Consensus 69 ~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~-~g~~yC~~~y~~~f---~~kC~~C~~~I~ 130 (182)
T 2jtn_A 69 HILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSR-GESVYCKDDFFKRF---GTKCAACQLGIP 130 (182)
T ss_dssp BCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCEEE-TTEEECHHHHHHTT---SCCCTTTCCCCC
T ss_pred CccCceeEEecCCeEccccCccCCCCCccCCCceeE-CCEeeecCcccccc---ccccccCCCccC
Confidence 4444333334455565 5589999998887644444 68889999987654 347999998875
No 187
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=38.39 E-value=11 Score=38.64 Aligned_cols=48 Identities=27% Similarity=0.658 Sum_probs=37.3
Q ss_pred CcccccccccCcccc---------eecCCCCCcc--------------------cHhHHHHHHhc-------CCCCCCCc
Q psy17011 43 SELMCPICLDMLKKT---------MTTKECLHRF--------------------CSDCIITALRS-------GNKECPTC 86 (321)
Q Consensus 43 ~~l~C~IC~~~l~~P---------vtl~~CgHtF--------------------C~~CI~~~l~~-------~~~~CP~C 86 (321)
+--+|+-|+.-+.+| +....||.+| |..|-..|-.. ....||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 567899999988888 3333599888 99999998642 24589999
Q ss_pred cccc
Q psy17011 87 RKKL 90 (321)
Q Consensus 87 r~~~ 90 (321)
+=.+
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 8776
No 188
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=36.95 E-value=59 Score=24.36 Aligned_cols=50 Identities=8% Similarity=-0.020 Sum_probs=35.9
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCcee--eCCCCchHHHHH
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFI--LLPGNQSLRQIH 302 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~--~L~~~~TL~~V~ 302 (321)
++.+.. .||..||.-|..+.+++.. .+-+||-. +|.++ ++.++.||.+.+
T Consensus 32 ~~v~~~---~TV~~LK~kI~~~~GiP~~----~QrL~~~~--~g~~~~~L~~D~~tL~~Y~ 83 (95)
T 2kjr_A 32 VKLAKD---LTVAQLKTKLEILTGGCAG----TMKVQVFK--GDTCVSTMDNNDAQLGYYA 83 (95)
T ss_dssp EEEETT---CBHHHHHHHHHHHHCSCTT----TEEEEEEE--TTEEEEECCCTTSBHHHHC
T ss_pred EEeCcc---CHHHHHHHHHHHHHCcCHH----HeEEEEec--CCcccceeCCCCCCHhHCC
Confidence 566677 9999999999999999863 33466643 24432 358899997643
No 189
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=36.83 E-value=34 Score=25.35 Aligned_cols=51 Identities=12% Similarity=-0.003 Sum_probs=34.7
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCcee--eCCCCchHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFI--LLPGNQSLRQI 301 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~--~L~~~~TL~~V 301 (321)
-++.+.. .||..||.-|+.+.+++.... -++|-.. +|..+ +|.++.||.+.
T Consensus 22 ~~~v~~~---~TV~~lK~ki~~~~gip~~~q----rL~~~~~-~g~~~~~l~~D~~tL~~y 74 (95)
T 1v6e_A 22 EKRYSRS---LTIAEFKCKLELVVGSPASCM----ELELYGA-DDKFYSKLDQEDALLGSY 74 (95)
T ss_dssp EEEECTT---SBHHHHHHHHHHHTCSCTTTC----BCEEECS-SSCEEEECCCSSSBTTSS
T ss_pred EEEcCcc---CHHHHHHHHHHHHHCCCHHHe----EEEEeCC-CCccccccCCCcCCHhHC
Confidence 3677888 999999999999999986433 3555332 13321 25777787653
No 190
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=36.62 E-value=71 Score=28.37 Aligned_cols=66 Identities=15% Similarity=0.113 Sum_probs=49.5
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeeec
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWK 319 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~~ 319 (321)
+.+... +|+.-|=.-|+.+++|...+ -|.+++....|+...|..+-++.+.. ++...|+.|++|.+
T Consensus 15 ~~v~~~---tt~~el~~~v~~~l~L~e~~----~FgL~~~~~~~~~~wLd~~~~l~~q~---~~~~~~~~l~fr~k 80 (294)
T 1ef1_A 15 FAIQPN---TTGKQLFDQVVKTIGLREVW----FFGLQYQDTKGFSTWLKLNKKVTAQD---VRKESPLLFKFRAK 80 (294)
T ss_dssp EEECTT---CBHHHHHHHHHHHHTCCCGG----GEEEEEEBTTSCEEECCSSSBGGGSC---BCCCSSEEEEEEES
T ss_pred EEECCC---CcHHHHHHHHHHHcCCCCcc----eeEEEEECCCCceeecccccCHHhhc---cCCCCCEEEEEEEE
Confidence 677788 99999999999999997522 26666654446666787777776532 56788999999875
No 191
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=36.56 E-value=27 Score=27.61 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=40.2
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-+++.-.. .++..|.+..+.|.+++...+- |++ +|+ .|.++.|..++.
T Consensus 53 v~fkIk~t---t~L~KLm~aY~er~Gl~~~~ir---FlF-----DG~--rI~~~~TP~dL~ 100 (115)
T 3kyd_D 53 IHFKVKMT---THLKKLKESYCQRQGVPMNSLR---FLF-----EGQ--RIADNHTPKELG 100 (115)
T ss_dssp EEEEEETT---SCTHHHHHHHHHHHTCCTTSEE---EEE-----TTE--ECCTTCCTTTTT
T ss_pred EEEEEccC---ChHHHHHHHHHHHhCCChhhEE---EEE-----CCe--ECCCCCCHHHcC
Confidence 57788888 9999999999999999866666 887 688 899999987653
No 192
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=35.39 E-value=15 Score=28.52 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=11.5
Q ss_pred cccHhHHHHHHhc
Q psy17011 66 RFCSDCIITALRS 78 (321)
Q Consensus 66 tFC~~CI~~~l~~ 78 (321)
.||+-|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999874
No 193
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=35.28 E-value=15 Score=28.46 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=11.5
Q ss_pred cccHhHHHHHHhc
Q psy17011 66 RFCSDCIITALRS 78 (321)
Q Consensus 66 tFC~~CI~~~l~~ 78 (321)
.||+-|+.+|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999874
No 194
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.02 E-value=8.3 Score=30.23 Aligned_cols=29 Identities=21% Similarity=0.542 Sum_probs=18.2
Q ss_pred cceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 56 KTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 56 ~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.|.... ||+.|+. -+. ....||.|+..-.
T Consensus 67 p~~C~~-CG~~F~~-----~~~-kPsrCP~CkSe~I 95 (105)
T 2gmg_A 67 PAQCRK-CGFVFKA-----EIN-IPSRCPKCKSEWI 95 (105)
T ss_dssp CCBBTT-TCCBCCC-----CSS-CCSSCSSSCCCCB
T ss_pred CcChhh-CcCeecc-----cCC-CCCCCcCCCCCcc
Confidence 344444 9999931 111 3578999998654
No 195
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.75 E-value=17 Score=28.24 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=35.3
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCc------C-----CcceEEEeecCCCceeeCC-CCchHHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDI------C-----DSNFGIYVSPSSNNFILLP-GNQSLRQIH 302 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~------~-----~~~~~iyi~~~~~~~~~L~-~~~TL~~V~ 302 (321)
-|-...+ +||..||+-|..+.+++...- + +.+.+|| .|+ +|. ++-||.+..
T Consensus 21 ~v~V~~~---~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~----~Gk--~L~dD~~tL~dyg 83 (105)
T 1v2y_A 21 PVVVVQN---ATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS----AGE--KLTEDRKKLRDYG 83 (105)
T ss_dssp EEEECTT---CBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES----SSC--EECCSSSBHHHHT
T ss_pred EEEECCC---ChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEe----CCc--CccCCcCCHHHcC
Confidence 3566677 999999999999998864211 0 1224554 477 775 679999864
No 196
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=34.56 E-value=30 Score=31.97 Aligned_cols=49 Identities=8% Similarity=0.122 Sum_probs=38.1
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHD 303 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~ 303 (321)
-.|..+.. .||..||+-|+.+.+++..+ +-+|| .|. +|.++.||.+...
T Consensus 246 ~~leV~~s---~TV~dLK~kI~~~~GIp~~~----QRLi~----~Gk--~L~D~~TLsdygI 294 (307)
T 3ai5_A 246 ITLEVEPS---DTIENVKAKIQDKEGIPPDQ----QRLIF----AGK--QLEDGRTLSDYNI 294 (307)
T ss_dssp EEEEECTT---CBHHHHHHHHHHHHCCCGGG----CEEEE----TTE--ECCTTSBTGGGTC
T ss_pred EEEEECCC---CcHHHHHHHHHHHHCcChHH----EEEEe----CCe--ecCCCCCHHHcCC
Confidence 45777788 99999999999999998533 34554 476 8999999987643
No 197
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=34.35 E-value=22 Score=25.10 Aligned_cols=47 Identities=19% Similarity=0.448 Sum_probs=32.9
Q ss_pred CcccccccccCcccceecCCCCCcccHhHHHHHHh---cCCCCCCCccccc
Q psy17011 43 SELMCPICLDMLKKTMTTKECLHRFCSDCIITALR---SGNKECPTCRKKL 90 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~---~~~~~CP~Cr~~~ 90 (321)
..-.|.||.+- -+-+.-..|...|...|+...+. .+...||.|....
T Consensus 11 ~~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45569999863 23344456999999999976554 2457999997644
No 198
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=34.20 E-value=27 Score=26.16 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=39.2
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-+++.-.. .++..|....+.|.+++...+- |++ +|+ .|.++.|+.+..
T Consensus 30 i~~~v~~~---t~l~kl~~~y~~~~gi~~~~~r---f~f-----dG~--~l~~~~Tp~dl~ 77 (93)
T 2d07_B 30 VQFKIKRH---TPLSKLMKAYCERQGLSMRQIR---FRF-----DGQ--PINETDTPAQLE 77 (93)
T ss_dssp EEEEEETT---SCHHHHHHHHHHHHTCCGGGEE---EEE-----TTE--ECCTTCCTTTTT
T ss_pred EEEEEccC---CHHHHHHHHHHHHhCCCccceE---EEE-----CCE--EcCCCCCHHHcC
Confidence 57777788 8999999999999999865444 776 688 899999987753
No 199
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=32.80 E-value=19 Score=29.97 Aligned_cols=30 Identities=27% Similarity=0.594 Sum_probs=22.0
Q ss_pred CcccccccccCcc----cceecCCCCCcccHhHH
Q psy17011 43 SELMCPICLDMLK----KTMTTKECLHRFCSDCI 72 (321)
Q Consensus 43 ~~l~C~IC~~~l~----~Pvtl~~CgHtFC~~CI 72 (321)
.+-.|.+|...|. .......|.|.+|+.|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 5789999999653 23444459999999885
No 200
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=32.51 E-value=54 Score=24.69 Aligned_cols=51 Identities=16% Similarity=0.422 Sum_probs=33.3
Q ss_pred ccCCCCcccccccccCcccce-ecCCCCCcccHhHHHHHH------------h---cCCCCCCCccc
Q psy17011 38 PRSLHSELMCPICLDMLKKTM-TTKECLHRFCSDCIITAL------------R---SGNKECPTCRK 88 (321)
Q Consensus 38 ~~~l~~~l~C~IC~~~l~~Pv-tl~~CgHtFC~~CI~~~l------------~---~~~~~CP~Cr~ 88 (321)
...+..+-+|.||...-.+-. ....|+..|...|+.+.- . .....||.|..
T Consensus 9 ~e~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 9 REPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred ccCCCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 344556789999985433221 122499999999999861 1 12358999944
No 201
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=32.33 E-value=17 Score=29.02 Aligned_cols=30 Identities=20% Similarity=0.515 Sum_probs=20.9
Q ss_pred cccccccccCccc---ceecCCCCCcccHhHHH
Q psy17011 44 ELMCPICLDMLKK---TMTTKECLHRFCSDCII 73 (321)
Q Consensus 44 ~l~C~IC~~~l~~---Pvtl~~CgHtFC~~CI~ 73 (321)
...|.+|...|.- -.-...||+.||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 3479999886652 22233599999999964
No 202
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=32.00 E-value=21 Score=28.57 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=36.1
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccC-CCCc---CCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLE-GSDI---CDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~-~~~~---~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
--|..... .||..||..|+....-+ ...+ .+.+-+|| .|. +|.++.||.+-
T Consensus 30 ~~lev~~s---~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy----~GK--~LeD~~TL~~y 84 (125)
T 2gow_A 30 KEFLFSPN---DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY----QGR--FLHGNVTLGAL 84 (125)
T ss_dssp EEEEECTT---SBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES----SSS--EEESSCBTGGG
T ss_pred EEEEeCCc---cHHHHHHHHHHHHCCcccccCCCCChHHEEEEE----CCc--CCCCCCcHHHc
Confidence 45677788 99999999999854322 1122 23456775 587 89999999874
No 203
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=31.89 E-value=18 Score=29.43 Aligned_cols=31 Identities=19% Similarity=0.588 Sum_probs=20.5
Q ss_pred CCcccccccccCcc----cceecCCCCCcccHhHH
Q psy17011 42 HSELMCPICLDMLK----KTMTTKECLHRFCSDCI 72 (321)
Q Consensus 42 ~~~l~C~IC~~~l~----~Pvtl~~CgHtFC~~CI 72 (321)
..+-.|.+|...|- .......|.|.+|..|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 35778999999772 12333347777777774
No 204
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=31.77 E-value=56 Score=24.67 Aligned_cols=51 Identities=12% Similarity=-0.044 Sum_probs=36.5
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCcee--eCCCCchHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFI--LLPGNQSLRQI 301 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~--~L~~~~TL~~V 301 (321)
=++.+.. .||..||.-|..+.+++.. .+-+||.... +..+ .+.++.||.+.
T Consensus 30 e~~v~~~---~TV~~LK~kIe~~~Gip~~----~QrLi~~g~~-g~~~~~L~~D~~tL~~Y 82 (97)
T 2kj6_A 30 DARFSPQ---MSVEAVKEKLWKKCGTSVN----SMALELYDDS-GSKVAVLSDDSRPLGFF 82 (97)
T ss_dssp EEEECTT---CCHHHHHHHHHHHHCCCTT----SEEEEEECSS-SCBCCCSSGGGSCHHHH
T ss_pred EEEeCCC---ChHHHHHHHHHHHHCcCHH----HeEEEEecCC-CcccceecCCcCCHHHC
Confidence 3677788 9999999999999999853 3457765432 3321 25888888764
No 205
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.28 E-value=63 Score=22.11 Aligned_cols=42 Identities=19% Similarity=0.515 Sum_probs=29.7
Q ss_pred ccCccCCC-CcccccccccCcccc-eecCCCCCcccHhHHHHHHh
Q psy17011 35 AVSPRSLH-SELMCPICLDMLKKT-MTTKECLHRFCSDCIITALR 77 (321)
Q Consensus 35 ~~~~~~l~-~~l~C~IC~~~l~~P-vtl~~CgHtFC~~CI~~~l~ 77 (321)
......++ .-|.|..|...|... .... =|..||..|..+.+.
T Consensus 23 ~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 23 VALDRVFHVGCFVCSTCRAQLRGQHFYAV-ERRAYCEGCYVATLE 66 (72)
T ss_dssp ECSSSEECTTTCBCSSSCCBCTTSCEEES-SSCEEEHHHHHHHHH
T ss_pred EECCCeEcccCCcccccCCcCCcCcCEee-CCeEECHHHHHHHHc
Confidence 34444555 448999999888653 4444 688899999988775
No 206
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=29.94 E-value=34 Score=27.65 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=28.8
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHH----------hcCCCCCCCccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITAL----------RSGNKECPTCRK 88 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l----------~~~~~~CP~Cr~ 88 (321)
+..|.+|.+=-.= +.-..|-..||..||.+.+ ..+...|+.|+-
T Consensus 57 ~~~C~vC~dGG~L-lcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGNL-ICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSEE-EECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCee-EecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4458888753111 1123499999999998752 235679999955
No 207
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=28.88 E-value=11 Score=28.05 Aligned_cols=57 Identities=25% Similarity=0.501 Sum_probs=38.8
Q ss_pred ccccccCccCCC-CcccccccccCcccc-eecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 31 NTEIAVSPRSLH-SELMCPICLDMLKKT-MTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 31 ~~~~~~~~~~l~-~~l~C~IC~~~l~~P-vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
+..+....+.++ .-|.|..|...|... .... =|..||..|..+.+ ...|..|.+++.
T Consensus 19 ~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~cy~~~~---~~~C~~C~~~I~ 77 (101)
T 2cup_A 19 SKEVHYKNRFWHDTCFRCAKCLHPLANETFVAK-DNKILCNKCTTRED---SPKCKGCFKAIV 77 (101)
T ss_dssp SCEEEETTEEEETTTCCCSSSCCCTTSSCCEEE-TTEEECHHHHTTCC---CCBCSSSCCBCC
T ss_pred ceEEEECccChhhcCCcccccCCCCCcCeeECc-CCEEEChhHhhhhc---CCccccCCCccc
Confidence 333344444555 448999999988654 3344 68889999975432 358999999886
No 208
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=28.41 E-value=25 Score=28.03 Aligned_cols=48 Identities=25% Similarity=0.504 Sum_probs=27.6
Q ss_pred CCcccccccccCcccc---eecCCCCCcccHhHHHHHHhcCCCCCCCccccc
Q psy17011 42 HSELMCPICLDMLKKT---MTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~P---vtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~ 90 (321)
.....|..|..-|.-- .-...||..||..|...... ....|-.|-..+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~~~ 67 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQRFR 67 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHHHH
Confidence 3456899998866422 22235999999999754433 244566665433
No 209
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.97 E-value=35 Score=32.65 Aligned_cols=28 Identities=21% Similarity=0.653 Sum_probs=22.0
Q ss_pred CCCCcccHhHHHHHHhc---------CCCCCCCcccc
Q psy17011 62 ECLHRFCSDCIITALRS---------GNKECPTCRKK 89 (321)
Q Consensus 62 ~CgHtFC~~CI~~~l~~---------~~~~CP~Cr~~ 89 (321)
.|...||..||.+.+.. ....|=.|.-.
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 48899999999998732 35689999754
No 210
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=27.80 E-value=32 Score=24.06 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=35.3
Q ss_pred cCccCCC-CcccccccccCccc-ceecCCCCCcccH-hHHHHHHhcCCCCCCCccccc
Q psy17011 36 VSPRSLH-SELMCPICLDMLKK-TMTTKECLHRFCS-DCIITALRSGNKECPTCRKKL 90 (321)
Q Consensus 36 ~~~~~l~-~~l~C~IC~~~l~~-Pvtl~~CgHtFC~-~CI~~~l~~~~~~CP~Cr~~~ 90 (321)
...+.++ +-|.|..|...|.. +.... =|..||. .|..+.+. ..|..|...+
T Consensus 18 a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~~cy~~~f~---~~C~~C~~~~ 71 (76)
T 1iml_A 18 SLGKDWHRPCLKCEKCGKTLTSGGHAEH-EGKPYCNHPCYSAMFG---PKGFGRGGAE 71 (76)
T ss_dssp ETTEEEETTTCBCTTTCCBCCTTTEEEE-TTEEEETTTHHHHHSS---CCCSSCCCSS
T ss_pred ECCccccCCCCCccccCccCCCCceECc-CCeEeeCHHHHHHHhC---ccCCCcCCce
Confidence 3344444 45899999998876 44445 6888999 69876553 4688887654
No 211
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.75 E-value=3.2 Score=31.11 Aligned_cols=10 Identities=40% Similarity=1.255 Sum_probs=5.3
Q ss_pred ccccccccCc
Q psy17011 45 LMCPICLDML 54 (321)
Q Consensus 45 l~C~IC~~~l 54 (321)
+.||.|...+
T Consensus 3 ~~CP~C~~~l 12 (81)
T 2jrp_A 3 ITCPVCHHAL 12 (81)
T ss_dssp CCCSSSCSCC
T ss_pred CCCCCCCCcc
Confidence 4555555544
No 212
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=27.71 E-value=53 Score=23.71 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=31.5
Q ss_pred EE-cCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCC-CCchHHHHH
Q psy17011 244 IS-TVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLP-GNQSLRQIH 302 (321)
Q Consensus 244 i~-~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~-~~~TL~~V~ 302 (321)
|. .++. +||..|+.+|+.+.+++..... ++|=-| +.-+.|. ++.||.+..
T Consensus 14 v~~l~~~---~Tv~~Lk~~I~~~~gi~~~~qr----L~~~~p--~k~l~l~~~~~tL~~~g 65 (86)
T 2kzr_A 14 LQGLSSR---TRLRELQGQIAAITGIAPGSQR----ILVGYP--PECLDLSDRDITLGDLP 65 (86)
T ss_dssp ECSCCTT---CBHHHHHHHHHHHTCCCTTTCC----CEESSC--CCCCCCCCSSCBTTTSS
T ss_pred eeecCCC---CCHHHHHHHHHHHhCCCccceE----EEeCCC--CcccccCCCCCCHHHcC
Confidence 44 5677 9999999999999998753333 333212 2311233 577887653
No 213
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=27.69 E-value=63 Score=25.17 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=34.1
Q ss_pred eEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCcee--eCCCCchHHHH
Q psy17011 243 KISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFI--LLPGNQSLRQI 301 (321)
Q Consensus 243 yi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~--~L~~~~TL~~V 301 (321)
=++.+.. .||..||.-|..+.+++... +-++|.... +.++ ++.++.||.+-
T Consensus 21 e~~v~~~---~TV~~lK~ki~~~~Gip~~~----qrL~~~g~~-~~~~~~l~~D~~tL~~y 73 (122)
T 1t0y_A 21 EKKYPAG---MSLNDLKKKLELVVGTTVDS----MRIQLFDGD-DQLKGELTDGAKSLKDL 73 (122)
T ss_dssp EEEEETT---SBHHHHHHHHHHHHCCCTTT----EEEEEECSS-SSEEEECCCCSSBTTTT
T ss_pred EEEeCCC---CcHHHHHHHHHHHhCCCHHH----eEEEEecCC-CccccccCCCcCCHHHC
Confidence 3677788 99999999999999998633 345554322 3332 24667777543
No 214
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=27.24 E-value=31 Score=23.77 Aligned_cols=47 Identities=19% Similarity=0.577 Sum_probs=32.5
Q ss_pred CCcccccccccCcccceecCCCCCcccHhHHHHHHh---cCCCCCCCcccc
Q psy17011 42 HSELMCPICLDMLKKTMTTKECLHRFCSDCIITALR---SGNKECPTCRKK 89 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~---~~~~~CP~Cr~~ 89 (321)
..+..|.+|... -+=+.-..|...|...|+..-+. .+...||.|...
T Consensus 9 ~~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG-GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC-CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 356789999873 23333345888999999976443 355789999764
No 215
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=27.09 E-value=40 Score=26.07 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=39.8
Q ss_pred CCeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 241 DDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 241 ~ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
..+++.-.. .++.-|.+..+.|.+++...+- |++ +|+ .|.++.|..++.
T Consensus 42 ~i~fkIk~t---t~l~kL~~ay~ek~gi~~~~~r---F~F-----dG~--rl~~~~Tp~dl~ 90 (106)
T 2eke_C 42 EIFFKIKKT---TPLRRLMEAFAKRQGKEMDSLR---FLY-----DGI--RIQADQTPEDLD 90 (106)
T ss_dssp EEEEEEETT---SCTHHHHHHHHHHHTCCGGGEE---EEE-----TTE--ECCTTCCTTTTT
T ss_pred EEEEEeCCC---CHHHHHHHHHHHHhCCCcccEE---EEE-----CCe--EcCCCCCHHHcC
Confidence 367888888 8999999999999999865555 776 688 899999987754
No 216
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=26.37 E-value=1.2e+02 Score=30.23 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=50.3
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeeec
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWK 319 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~~ 319 (321)
|.+... +|+.-|-..|+.+|+|... .-|.+|+....|++..|..+.++... -|+...|+.|+||.+
T Consensus 18 ~~vd~~---tt~~ell~~V~~~LgL~e~----~~FGL~~~d~~~~~~WLd~~k~i~~q---~~~~~~~~~L~FRvk 83 (575)
T 2i1j_A 18 FAIQQT---TTGKQLFDQVVKTIGLREV----WFFGLQYTDSKGDLTWIKLYKKVMQQ---DVKKENPLQFKFRAK 83 (575)
T ss_dssp EEEETT---CBHHHHHHHHHHHHTCCCG----GGEEEEEEBTTSCEEECCTTSBGGGS---CBCCCSSEEEEEEES
T ss_pred EEECCC---CCHHHHHHHHHHHcCCCCc----cceeEEEEecCcchhHhhccccHHHh---cccCCCCeEEEEEEE
Confidence 777788 9999999999999999742 12666665445777788888777542 267889999999875
No 217
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=26.28 E-value=44 Score=28.93 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=40.4
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-+++.-.. .++..|.+..+.|.+++...+- |++ +|+ .|.++.|.+++.
T Consensus 41 v~fkIk~~---t~l~kL~~ay~er~Gi~~~~~R---F~F-----dG~--rI~~~~TP~dL~ 88 (200)
T 3pge_A 41 IFFKIKKT---TPLRRLMEAFAKRQGKEMDSLR---FLY-----DGI--RIQADQTPEDLD 88 (200)
T ss_dssp EEEEECTT---SCTHHHHHHHHHHHSSCGGGEE---EEE-----TTE--ECCTTCCTTTTT
T ss_pred EEEEEecC---CHHHHHHHHHHHHhCCChhhEE---EEE-----CCE--EcCCCCCHHHcC
Confidence 68888888 9999999999999999865555 777 688 899999987653
No 218
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=26.27 E-value=25 Score=26.30 Aligned_cols=30 Identities=20% Similarity=0.466 Sum_probs=20.1
Q ss_pred cccccccccCcc---cceecCCCCCcccHhHHH
Q psy17011 44 ELMCPICLDMLK---KTMTTKECLHRFCSDCII 73 (321)
Q Consensus 44 ~l~C~IC~~~l~---~Pvtl~~CgHtFC~~CI~ 73 (321)
...|.+|..-|. .-.--..||+.||..|..
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~ 52 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCN 52 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccC
Confidence 356888887554 222223499999999964
No 219
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=25.83 E-value=42 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=19.6
Q ss_pred cccccccCccc---ceecCCCCCcccHhHHH
Q psy17011 46 MCPICLDMLKK---TMTTKECLHRFCSDCII 73 (321)
Q Consensus 46 ~C~IC~~~l~~---Pvtl~~CgHtFC~~CI~ 73 (321)
.|.+|...|.- -.--..||..||..|..
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccC
Confidence 79999886642 22223599999999963
No 220
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=25.62 E-value=67 Score=23.45 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=21.3
Q ss_pred CcccccccccCccc---ceecCCCCCcccHhHHH
Q psy17011 43 SELMCPICLDMLKK---TMTTKECLHRFCSDCII 73 (321)
Q Consensus 43 ~~l~C~IC~~~l~~---Pvtl~~CgHtFC~~CI~ 73 (321)
+...|.+|...|.- -.--..||..||..|..
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 45578888886642 22233599999999964
No 221
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=25.40 E-value=14 Score=23.66 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=21.4
Q ss_pred cccccccccCcccceecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.+.|++|...|.....+. .| +..........|+.|...+.
T Consensus 4 ~~~C~~C~~~f~~~~~l~--~H------~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN--IH------LRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH--HH------HHHHHCCCCEECSSSSCEES
T ss_pred CccCCCCcchhCChHHHH--HH------HHHcCCCCCcCCCCCcchhC
Confidence 356777766665543332 01 11111223468999998875
No 222
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=25.19 E-value=24 Score=25.71 Aligned_cols=32 Identities=28% Similarity=0.677 Sum_probs=21.5
Q ss_pred cccccc--cccCcc-----cceecC-----CCCCcccHhHHHHH
Q psy17011 44 ELMCPI--CLDMLK-----KTMTTK-----ECLHRFCSDCIITA 75 (321)
Q Consensus 44 ~l~C~I--C~~~l~-----~Pvtl~-----~CgHtFC~~CI~~~ 75 (321)
..-||- |...+. ..+.-+ .||+.||..|-..|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 556776 766543 234553 49999999998665
No 223
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.77 E-value=15 Score=25.09 Aligned_cols=38 Identities=11% Similarity=0.260 Sum_probs=24.4
Q ss_pred CCcccccccccCcccceecCCCCCcccHhHHHHHHh----cCCCCCCCcccccc
Q psy17011 42 HSELMCPICLDMLKKTMTTKECLHRFCSDCIITALR----SGNKECPTCRKKLV 91 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pvtl~~CgHtFC~~CI~~~l~----~~~~~CP~Cr~~~~ 91 (321)
...+.|.+|...|.....+. .+.+ .....|+.|.+.+.
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~------------~H~~~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLA------------SHKTVHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHH------------HHHHHHCCCCSEECTTTCCEES
T ss_pred CCCeECCCCCceeCCHHHHH------------HHHHHcCCCCCEECCCCCchhC
Confidence 34678888888776553332 2222 23468999999886
No 224
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.68 E-value=44 Score=28.89 Aligned_cols=33 Identities=18% Similarity=0.532 Sum_probs=22.5
Q ss_pred CCCcccccccccCcc---cceecCCCCCcccHhHHH
Q psy17011 41 LHSELMCPICLDMLK---KTMTTKECLHRFCSDCII 73 (321)
Q Consensus 41 l~~~l~C~IC~~~l~---~Pvtl~~CgHtFC~~CI~ 73 (321)
+.+.-.|.+|..-|. .-.-...||+.||..|..
T Consensus 158 W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 158 WADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 345679999998664 222223499999998854
No 225
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=24.42 E-value=1.2e+02 Score=22.91 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=39.6
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-+++.-.. .++.-|-+..|.|.+++...+- |++ +|+ .|.++.|.+++.
T Consensus 39 v~fkIk~~---t~l~kLm~aY~~~~g~~~~~vr---F~F-----DG~--rI~~~~TP~dLd 86 (97)
T 2jxx_A 39 LEVSLSRD---SPLKTLMSHYEEAMGLSGRKLS---FFF-----DGT--KLSGRELPADLG 86 (97)
T ss_dssp EEEEEETT---SCHHHHHHHHHHHTTCSSSCCE---EEE-----TTE--ECCSCSCHHHHT
T ss_pred EEEEECCC---ChHHHHHHHHHHHHCCCcccEE---EEE-----CCE--EcCCCCCHHHcC
Confidence 47777777 8899999999999999865555 887 688 899999988763
No 226
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=24.36 E-value=22 Score=25.35 Aligned_cols=49 Identities=18% Similarity=0.409 Sum_probs=33.1
Q ss_pred CcccccccccCcccc--eecCCCCCcccHhHHHHHHhc---CCCCCCCcccccc
Q psy17011 43 SELMCPICLDMLKKT--MTTKECLHRFCSDCIITALRS---GNKECPTCRKKLV 91 (321)
Q Consensus 43 ~~l~C~IC~~~l~~P--vtl~~CgHtFC~~CI~~~l~~---~~~~CP~Cr~~~~ 91 (321)
+...|++|......- +.-..|..-|...|+.-.... +...||.|...+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 567899998764332 333458888889998643321 4578999987664
No 227
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=24.02 E-value=35 Score=28.64 Aligned_cols=42 Identities=21% Similarity=0.449 Sum_probs=30.5
Q ss_pred ccCccCCC-CcccccccccCcccc-eecCCCCCcccHhHHHHHHh
Q psy17011 35 AVSPRSLH-SELMCPICLDMLKKT-MTTKECLHRFCSDCIITALR 77 (321)
Q Consensus 35 ~~~~~~l~-~~l~C~IC~~~l~~P-vtl~~CgHtFC~~CI~~~l~ 77 (321)
....+.++ +-|.|..|...|..- .... =|..||..|..+.+.
T Consensus 24 ~a~g~~wH~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 24 QCEGSSFHKSCFLCMVCKKNLDSTTVAVH-GDEIYCKSCYGKKYG 67 (192)
T ss_dssp EETTEEECTTTCBCTTTCCBCCSSSEEEE-TTEEEEHHHHHHHHS
T ss_pred EeCCceecCCCCcCcccCCcCCCCeeEec-CCEeeChhhhHhhcC
Confidence 34445565 568999999988764 3334 688899999988775
No 228
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.57 E-value=52 Score=24.19 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=33.8
Q ss_pred E-EcCCCCCcchhhhHHHHHHHH-hccCCCCcCCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 244 I-STVESATDGEVDHLTKYLTMR-LRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 244 i-~~sa~~~~aTV~HL~KyLa~r-l~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
| ..+.. +||..|++-|+.+ -+++.... -++|+ . .|. +|.++.||.+-
T Consensus 27 l~~v~~~---~TV~~lK~~I~~~~~~i~~~~Q----rL~~~-~-~Gk--~L~D~~tL~~y 75 (88)
T 2dzj_A 27 LDKVEPH---ATIAEIKNLFTKTHPQWYPARQ----SLRLD-P-KGK--SLKDEDVLQKL 75 (88)
T ss_dssp EEEECSS---CBHHHHHHHHHHHCSSSCTTTC----CEESS-T-TSC--CCCTTCBTTTS
T ss_pred EeEcCCC---CcHHHHHHHHHHHhcCCChHHe----EEEec-C-CCc--CcCCCCCHHHc
Confidence 6 78888 9999999999995 57764333 35543 2 255 88888888763
No 229
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.35 E-value=32 Score=25.81 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=26.7
Q ss_pred cccccccccCcc--cceecCCCCCcccHhHHHHHHhcCCCCCCCcccc
Q psy17011 44 ELMCPICLDMLK--KTMTTKECLHRFCSDCIITALRSGNKECPTCRKK 89 (321)
Q Consensus 44 ~l~C~IC~~~l~--~Pvtl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~ 89 (321)
.-.|..|..-+- .+.... ||..||..=- +- ....|+.--+.
T Consensus 25 ~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HR--y~--e~H~C~fDyK~ 67 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECR-CGNNFCASHR--YA--EAHGCNYDYKS 67 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECT-TCCEECTTTC--ST--GGGTCCSCCSS
T ss_pred CccchhhCCeecccCCeEcC-CCCEecccCC--Cc--cCCCCcchhhH
Confidence 368999997433 488888 9999997321 11 13468765443
No 230
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.78 E-value=81 Score=23.25 Aligned_cols=51 Identities=22% Similarity=0.118 Sum_probs=32.4
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCC-ceeeC-CCCchHHHH
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSN-NFILL-PGNQSLRQI 301 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~-~~~~L-~~~~TL~~V 301 (321)
++.+.. .||..||.-|+..++++....- ++|.....+ ..+.| +++.||.+.
T Consensus 27 ~~l~~~---~TV~~LK~~i~~~~gip~~~q~----L~~~~~~~~~~~~~L~~d~~~L~~y 79 (97)
T 1wjn_A 27 KQLPDS---MTVQKVKGLLSRLLKVPVSELL----LSYESSKMPGREIELENDLQPLQFY 79 (97)
T ss_dssp EEEETT---SBHHHHHHHHHTTTTCCTTTCE----EEEECTTSCSCEEECCCSSSBSGGG
T ss_pred EECCCC---CCHHHHHHHHHHHHCCChhHeE----EEEEcCCCCceeeccCCCcccHhhc
Confidence 456677 9999999999999999864333 444432112 22224 566666553
No 231
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.51 E-value=8.2 Score=26.93 Aligned_cols=32 Identities=28% Similarity=0.609 Sum_probs=18.5
Q ss_pred ccccccccCcccc-----eecCC--CCCcccHhHHHHHH
Q psy17011 45 LMCPICLDMLKKT-----MTTKE--CLHRFCSDCIITAL 76 (321)
Q Consensus 45 l~C~IC~~~l~~P-----vtl~~--CgHtFC~~CI~~~l 76 (321)
-.||-|..++... |+... |++.||-.|...|-
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 4688888776643 22222 66666666655443
No 232
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=22.33 E-value=1.2e+02 Score=27.09 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=49.1
Q ss_pred EEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHHHhhcCCCCCeEEEeeec
Q psy17011 244 ISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWK 319 (321)
Q Consensus 244 i~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~~~~Wk~~~Pl~l~Y~~~ 319 (321)
+.+... +|+.-|-.-|+.+|+|...+ -|.+++.. .++..-|..+-+|.+.. ++...|+.|++|.+
T Consensus 36 ~~v~~~---t~~~el~~~v~~~l~L~e~~----~FgL~~~~-~~~~~wL~~~~~i~~q~---~~~~~~~~l~fr~k 100 (314)
T 1h4r_A 36 FNCEMK---WKGKDLFDLVCRTLGLRETW----FFGLQYTI-KDTVAWLKMDKKVLDHD---VSKEEPVTFHFLAK 100 (314)
T ss_dssp EEEETT---CBHHHHHHHHHHHHTCCCGG----GEEEEEEE-TTEEEECCTTSBGGGSS---CCCSSSEEEEEEES
T ss_pred EEeCCC---CcHHHHHHHHHHHhCCCCCc----cceEEEEe-CCcCeeCCCccCHHHcC---CCCCCCEEEEEEEE
Confidence 778888 99999999999999997421 24444443 47766788888877632 67788999999875
No 233
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.02 E-value=55 Score=25.60 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=26.4
Q ss_pred cccccccccCcccce-ecCCCCCcccHhHHHHHHhcCCCCCCCcccccc
Q psy17011 44 ELMCPICLDMLKKTM-TTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91 (321)
Q Consensus 44 ~l~C~IC~~~l~~Pv-tl~~CgHtFC~~CI~~~l~~~~~~CP~Cr~~~~ 91 (321)
.-.|.-|...+.+.. ... -+..|...| +.|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a-~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA-MDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE-TTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe-CCcEEcccc---------cCcCcCCCccc
Confidence 468999998777663 334 666666655 46888888775
No 234
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=21.97 E-value=1.2e+02 Score=22.57 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=39.4
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCC-CcCCcceEEEeecCCCceeeCCCCchHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGS-DICDSNFGIYVSPSSNNFILLPGNQSLRQI 301 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~-~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V 301 (321)
=+++...+ +||.-|-|--+.+-+++.. .|- |++ +|. .|.++.|+.+.
T Consensus 22 l~f~I~~~---t~v~kLi~ayc~~~~I~~~~~Ir---llF-----DGd--RLdp~~tp~Dl 69 (82)
T 3goe_A 22 LRLSIPVD---FTVKDLIKRYCTEVKISFHERIR---LEF-----EGE--WLDPNDQVQST 69 (82)
T ss_dssp EEEEEETT---SBHHHHHHHHHHHHTCCCCTTCE---EEE-----TTE--ECCTTSBGGGS
T ss_pred eEEEecCC---CCHHHHHHHHHHHcCCCcCceEE---EEE-----cCc--ccCccCChhhh
Confidence 56788888 9999999999999999975 566 777 688 99999998763
No 235
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.69 E-value=58 Score=28.41 Aligned_cols=31 Identities=19% Similarity=0.502 Sum_probs=21.3
Q ss_pred CcccccccccCcc---cceecCCCCCcccHhHHH
Q psy17011 43 SELMCPICLDMLK---KTMTTKECLHRFCSDCII 73 (321)
Q Consensus 43 ~~l~C~IC~~~l~---~Pvtl~~CgHtFC~~CI~ 73 (321)
+.-.|.+|..-|. .-.-...||+.||..|..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 4568999987654 122223499999999964
No 236
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=21.50 E-value=1.4e+02 Score=21.30 Aligned_cols=16 Identities=25% Similarity=0.687 Sum_probs=11.1
Q ss_pred CCcccccccccCcccc
Q psy17011 42 HSELMCPICLDMLKKT 57 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~P 57 (321)
...+.|.+|...|...
T Consensus 15 ~~~~~C~~C~~~f~~~ 30 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKS 30 (106)
T ss_dssp CCCCBCSSSCCBCSSH
T ss_pred CcCeECCCCCCccCCH
Confidence 3457888888877643
No 237
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=21.22 E-value=20 Score=33.92 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=0.0
Q ss_pred cccccccccCcccc---eecCCCCCcccHhHHHHH
Q psy17011 44 ELMCPICLDMLKKT---MTTKECLHRFCSDCIITA 75 (321)
Q Consensus 44 ~l~C~IC~~~l~~P---vtl~~CgHtFC~~CI~~~ 75 (321)
.-.|.+|..-|.-- .-...||+.||..|....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp -----------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 45799998866411 122249999999998654
No 238
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.14 E-value=9.6 Score=35.40 Aligned_cols=47 Identities=23% Similarity=0.387 Sum_probs=32.2
Q ss_pred CCcccccccccCcccceecC---CCC--CcccHhHHHHHHhcCCCCCCCcccc
Q psy17011 42 HSELMCPICLDMLKKTMTTK---ECL--HRFCSDCIITALRSGNKECPTCRKK 89 (321)
Q Consensus 42 ~~~l~C~IC~~~l~~Pvtl~---~Cg--HtFC~~CI~~~l~~~~~~CP~Cr~~ 89 (321)
...-.||+|...-.-.+... .=| +-+|..|-..|--. ...||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 45679999999766544331 234 45688887777543 5689999886
No 239
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=21.12 E-value=67 Score=27.96 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=40.2
Q ss_pred CeEEcCCCCCcchhhhHHHHHHHHhccCCCCcCCcceEEEeecCCCceeeCCCCchHHHHH
Q psy17011 242 DKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH 302 (321)
Q Consensus 242 ryi~~sa~~~~aTV~HL~KyLa~rl~l~~~~~~~~~~~iyi~~~~~~~~~L~~~~TL~~V~ 302 (321)
-+++.-.. .++..|.+..+.|.+++...+- |++ +|+ .|.++.|.+++.
T Consensus 69 V~FKIKrt---TpL~KLmeAYcERqGL~~~sIR---FLF-----DGq--RI~~ddTPeDLd 116 (207)
T 3tix_A 69 IFFKIKKT---TPLRRLMEAFAKRQGKEMDSLT---FLY-----DGI--EIQADQTPEDLD 116 (207)
T ss_dssp EEEEEETT---SCTHHHHHHHHHHTTCCGGGSC---EEE-----TTE--ECCSSCCTTTTT
T ss_pred EEEEEccC---ChHHHHHHHHHHHhCCCcccEE---EEE-----CCe--ecCCCCCHHHcC
Confidence 67888888 9999999999999999876666 887 688 888898887653
No 240
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=20.59 E-value=40 Score=24.12 Aligned_cols=32 Identities=19% Similarity=0.480 Sum_probs=21.8
Q ss_pred CcccccccccCcccceecCCC-CCcccHhHHHHHH
Q psy17011 43 SELMCPICLDMLKKTMTTKEC-LHRFCSDCIITAL 76 (321)
Q Consensus 43 ~~l~C~IC~~~l~~Pvtl~~C-gHtFC~~CI~~~l 76 (321)
+.--|-||.+--. +...-| |-.||..|+...-
T Consensus 7 e~pWC~ICneDAt--lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT--LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC--EEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe--EEecCCCCceehHHHHHHHc
Confidence 3456889988622 333338 8889999987754
Done!