RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17011
(321 letters)
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain,
a specialized type of Zn-finger of 40 to 60 residues
that binds two atoms of zinc; defined by the
'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)-
H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved
in mediating protein-protein interactions; identified
in a proteins with a wide range of functions such as
viral replication, signal transduction, and
development; has two variants, the C3HC4-type and a
C3H2C3-type (RING-H2 finger), which have different
cysteine/histidine pattern; a subset of RINGs are
associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
Length = 45
Score = 65.9 bits (161), Expect = 2e-14
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 46 MCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90
CPICL+ ++ + C H FC CI L+SG CP CR +
Sbjct: 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger). The
C3HC4 type zinc-finger (RING finger) is a cysteine-rich
domain of 40 to 60 residues that coordinates two zinc
ions, and has the consensus sequence:
C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C
where X is any amino acid. Many proteins containing a
RING finger play a key role in the ubiquitination
pathway.
Length = 40
Score = 64.8 bits (158), Expect = 6e-14
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 47 CPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTC 86
CPICL+ K +T C H FCS CI++ L SGN CP C
Sbjct: 1 CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVTCPLC 40
>gnl|CDD|214546 smart00184, RING, Ring finger. E3 ubiquitin-protein ligase
activity is intrinsic to the RING domain of c-Cbl and
is likely to be a general function of this domain;
Various RING fingers exhibit binding activity towards
E2 ubiquitin-conjugating enzymes (Ubc' s).
Length = 40
Score = 58.3 bits (141), Expect = 1e-11
Identities = 19/40 (47%), Positives = 20/40 (50%)
Query: 47 CPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTC 86
CPICL+ K C H FC CI L SGN CP C
Sbjct: 1 CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger).
Length = 45
Score = 56.0 bits (135), Expect = 9e-11
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 43 SELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRK 88
EL CPICLD+L+ + C H FC +CI+ L+ +CP CR
Sbjct: 1 EELECPICLDLLRDPVVLTPCGHVFCRECILRYLKK-KSKCPICRT 45
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain.
Length = 46
Score = 49.7 bits (119), Expect = 2e-08
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 46 MCPICLD--MLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKK 89
CPICLD + + C H F +C+ LRS + CP CR
Sbjct: 2 ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRS-SNTCPLCRAP 46
>gnl|CDD|227547 COG5222, COG5222, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 427
Score = 47.8 bits (113), Expect = 4e-06
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 25 QEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECP 84
+A+ + + + + L CP+C +L+ M T C H FC +CI TAL + +CP
Sbjct: 255 TKAVAEIPDQVYKMQPPNISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCP 314
Query: 85 TCRKKLVSKRSLRADPNFDLLISKI 109
C +K V L D + L + K
Sbjct: 315 NCSRKDVLLDGLTPDIDKKLEVEKA 339
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger).
Length = 49
Score = 40.1 bits (94), Expect = 5e-05
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 43 SELMCPICLDMLKKTMTTKECLHR-FCSDCIITALRSGNKECPTCRKK 89
+ +C ICL+ + + C H C +C LRS K+CP CR+
Sbjct: 1 EDDLCVICLER-PRNVVFLPCGHLCLCEECA-KRLRS-KKKCPICRQP 45
>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18. All proteins in this
family for which functions are known are involved in
nucleotide excision repair.This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 397
Score = 38.8 bits (90), Expect = 0.002
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCR 87
L + L C IC D + T C H FCS CI L + K CP CR
Sbjct: 23 LDTSLRCHICKDFFDVPVLT-SCSHTFCSLCIRRCLSNQPK-CPLCR 67
>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional.
Length = 238
Score = 36.3 bits (84), Expect = 0.012
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 47 CPICLDML-KKTMTTK------ECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLR 97
C IC++ + K + C H FC +CI + CP CR +S R
Sbjct: 177 CAICMEKVYDKEIKNMYFGILSNCNHVFCIECI-DIWKKEKNTCPVCRTPFISVIKSR 233
>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation
motif. This zinc-finger is the dimerisation motif for
LisH proteins, and is also a typical RING-type of plant
ubiquitin ligases.
Length = 55
Score = 32.3 bits (74), Expect = 0.031
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 42 HSELMCPICLDMLKKTMTTKE-------CLHRFCSDCIITALRSGNK-ECPT 85
HS +CPI K+ MT +E C H + + ++G K +CP
Sbjct: 8 HSIFVCPIS----KEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCPY 55
>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 271
Score = 34.5 bits (79), Expect = 0.046
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 13/97 (13%)
Query: 9 TTKSWELSMYELNRTPQEAITDNTEIAVSPRSLHS-----------ELMCPICLDMLKKT 57
T + L L Q + +T V + S + C +CL+ +
Sbjct: 169 TAVALSLDESRLQPILQPSNNLHTLFQVITKENLSKKNGLPFIPLADYKCFLCLEEPEVP 228
Query: 58 MTTKECLHRFCSDCIITALRSGNKE-CPTCRKKLVSK 93
T C H FC C++ + E CP CR K+ K
Sbjct: 229 SCT-PCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 34.6 bits (80), Expect = 0.051
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 141 NEGIKLQSQHRLQRTKKNIQGNEENTPDISNTDQTSVQQQPSPQPTTSNAIKNQLSPAVP 200
NE + +Q ++ Q T+ Q QP P + A +PA
Sbjct: 108 NEQTPQVPRSTVQIQQQAQQQQPP---------ATTAQPQPVTPPRQTTAPVQPQTPAPV 158
Query: 201 KSPEARPSSAASSSTTKVSKKTAKSDVM 228
++ A P + A + ++K + M
Sbjct: 159 RTQPAAPVTQAVEAPKVEAEKEKEQRWM 186
>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit.
Nse1 and Nse2 are novel non-SMC subunits of the fission
yeast Smc5-6 DNA repair complex. This family is the
zinc-finger domain similar to the MIZ type of
zinc-finger.
Length = 57
Score = 31.5 bits (72), Expect = 0.051
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 33 EIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGN-KECP 84
E+ V ++ L CP+ L ++ +T+K+C H F D I++ LR +CP
Sbjct: 2 ELVVEGGTI--SLTCPLTLQPFEEPVTSKKCNHVFEKDAILSMLRRNKTVKCP 52
>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 1525
Score = 35.0 bits (80), Expect = 0.052
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 47 CPIC---LDMLKKTMTTKEC---LHRFCSDCIITALRSGNKE-CPTCRKKLVS 92
C IC LDM+ +++ +K C ++F + C+ S + CP CR ++
Sbjct: 1472 CAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 34.5 bits (79), Expect = 0.072
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 175 TSVQQQPSPQPTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAKSDVMTSELET 234
T P+ PT++ + A P+SA + S+++A + S T
Sbjct: 81 TGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSP--SEESATATAPESP-ST 137
Query: 235 DDTSETDDKISTVESATDGEV 255
S D ST+ ++ E
Sbjct: 138 SVPSSGSDAASTLVVGSERET 158
>gnl|CDD|227545 COG5220, TFB3, Cdk activating kinase (CAK)/RNA polymerase II
transcription initiation/nucleotide excision repair
factor TFIIH, subunit TFB3 [Cell division and
chromosome partitioning / Transcription / DNA
replication, recombination, and repair].
Length = 314
Score = 33.8 bits (77), Expect = 0.099
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 44 ELMCPIC-----LDMLKKTMTTKECLHRFCSDCIITALRSGNKECPT--CRKKL 90
+ CP+C L+ K + EC HR C C+ G +CP C K L
Sbjct: 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63
>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase
[Signal transduction mechanisms].
Length = 391
Score = 33.5 bits (76), Expect = 0.14
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCR 87
S + L S L C IC + T C H FCS CI L + CP CR
Sbjct: 18 SLKGLDSMLRCRICDCRISIPCETT-CGHTFCSLCIRRHLGT-QPFCPVCR 66
>gnl|CDD|227481 COG5152, COG5152, Uncharacterized conserved protein, contains RING
and CCCH-type Zn-fingers [General function prediction
only].
Length = 259
Score = 32.4 bits (73), Expect = 0.23
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 46 MCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLL 105
+C IC + + T EC H FCS C I + G+ EC C K + + +
Sbjct: 198 LCGICKKDYESPVVT-ECGHSFCSLCAIRKYQKGD-ECGVCGKA--TYGRFWVVSDLQKM 253
Query: 106 ISK 108
++K
Sbjct: 254 LNK 256
>gnl|CDD|111745 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger. This domain has SUMO
(small ubiquitin-like modifier) ligase activity and is
involved in DNA repair and chromosome organisation.
Length = 50
Score = 28.4 bits (64), Expect = 0.59
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 45 LMCPICLDMLKKTMTTKECLHRFCSDC---IITALRSGNKECPTCRK 88
L CPI + + + C H C D + + R+ CP C K
Sbjct: 3 LKCPISYLRISIPVRGRFCKHIQCFDLLSFLESNERTPTWNCPVCDK 49
>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau;
Validated.
Length = 451
Score = 31.3 bits (71), Expect = 0.64
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 163 EENTPDISNTDQTSVQQQPSPQPTTSNAIKNQLSPAVPKS-PEARPSSAASSSTTKVS 219
E P I +++ P PQP + L+ A P++ E S S +K +
Sbjct: 373 ESCPPQIKSSNSQQTVSSPQPQPVAKLEQGSLLTAASPQTKKETIHQEVPSPSLSKSA 430
>gnl|CDD|215430 PLN02800, PLN02800, imidazoleglycerol-phosphate dehydratase.
Length = 261
Score = 31.0 bits (70), Expect = 0.65
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 198 AVPKSPEARPSSAASSSTTKVSKKTAKSDVMTSELETDDTSETDDKISTVESATDGEVDH 257
PK ++ + S + M S+L + S+ GEV
Sbjct: 13 LRPKLSFIDLLPRRAAIVSSPSSSLPRFLRMESQLRQSISCAASSS-SSNALGRIGEVKR 71
Query: 258 LTK--YLTMRLRLEGSDICDSNFGI 280
+TK +++++ L+G+ + DS+ GI
Sbjct: 72 VTKETNVSVKINLDGTGVADSSTGI 96
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 31.4 bits (71), Expect = 0.68
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 46 MCPICLDMLKKT------MTTKECLHRFCSDCIITALRSGNKECPTCRKK 89
C IC D ++ T + EC C C R GN+ CP C+ +
Sbjct: 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score
[Energy metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 30.9 bits (70), Expect = 0.90
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Query: 161 GNEENTPDISNTDQTSVQQQPSPQPTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSK 220
+E+ D + P+P+P+ +P +P+ S SS +S
Sbjct: 76 EEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQ--KQSPEPSSPAPLSD 133
Query: 221 KTAKSDVMTSELETDDTSETDDKISTV 247
K + + S L E +S V
Sbjct: 134 KESGDRIFASPLAKKLAKEKGIDLSAV 160
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 31.1 bits (70), Expect = 0.96
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 135 ALVQSINEGIKLQSQHRLQRTKK-----NIQGNEENT-----PDISNTDQTSVQQQPSPQ 184
A+ +S+ ++L QH+ + K N+Q + + ++ V Q P Q
Sbjct: 1081 AIPESLQRSMELFHQHQAETLKVHEQYLNLQTDSNIVKLSPLATQAPVIKSVVTQAPVVQ 1140
Query: 185 PTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAKSDVMTSELETDD 236
T S A + PAV P + A S +T A+ + ++ D
Sbjct: 1141 VTISVAPAAPVLPAVVSPPVVSAAPAQSVATAVAMAPVAEVPIAVPVQQSVD 1192
>gnl|CDD|144881 pfam01452, Rota_NSP4, Rotavirus non structural protein. This
protein has been called NSP4, NSP5, NS28, and NCVP5. The
final steps in the assembly of rotavirus occur in the
lumen of the endoplasmic reticulum (ER). Targeting of
the immature inner capsid particle (ICP) to this
compartment is mediated by the cytoplasmic tail of NSP4,
located in the ER membrane.
Length = 174
Score = 29.9 bits (67), Expect = 1.2
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 54 LKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSR 113
+K TT C ++ ++T T + K + + + S+I
Sbjct: 54 MKVAKTTSGCSYKVIKVVVVTIFN-------TLLRLFGYKTEVTSKDEIEKQASRIVKEI 106
Query: 114 DEYEAHQVRVLEKLNKSH-SQAALVQSINEGIKLQSQHRLQRTKKNIQGNEENTPD 168
E Q++++EKL Q L++ I + +K+ S + + +K+ + + +
Sbjct: 107 RE----QLKMIEKLTTREIEQVELLKRIYDMLKVTSDNEIDMSKETNRKAYKTLHE 158
>gnl|CDD|227502 COG5175, MOT2, Transcriptional repressor [Transcription].
Length = 480
Score = 30.4 bits (68), Expect = 1.3
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 44 ELMCPICL---DMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKK 89
E CP+C+ D+ K C ++ C C ++ N CP CR+K
Sbjct: 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRK 62
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are
components of TFIIH, a complex that is involved in
nucleotide excision repair and transcription
initiation. Also known as MAT1 (menage a trois 1). This
family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 309
Score = 30.2 bits (68), Expect = 1.4
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 44 ELMCPICLDMLKKTMTTK----ECLHRFCSDCIITALRSGNKECPTCRKKL 90
+ CP C + + K C H C C+ G+ CP C L
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPL 53
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein.
Length = 1135
Score = 30.4 bits (69), Expect = 1.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 58 MTTKECLHRFCSDCIITALRSGNKECPTCRK 88
+ EC + C DC I A++SG CP C++
Sbjct: 145 LLPCECGFKICRDCYIDAVKSGGI-CPGCKE 174
>gnl|CDD|219314 pfam07160, DUF1395, Protein of unknown function (DUF1395). This
family consists of several hypothetical eukaryotic
proteins of around 250 residues in length. The function
of this family is unknown.
Length = 243
Score = 29.8 bits (67), Expect = 1.5
Identities = 41/183 (22%), Positives = 66/183 (36%), Gaps = 38/183 (20%)
Query: 88 KKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNKSHSQAALVQSINEGIKLQ 147
K+L+S R++ DP +SKI + +INE
Sbjct: 6 KELLSARNMYPDPAIPTTLSKIGDE------------------------LSAINE----- 36
Query: 148 SQHRLQRTKKNIQGNEENTPDISNTDQTSVQQQPSPQPTTSNAIKNQLSPAVPKSPEARP 207
LQ + +Q E P + + S++QQ Q +K P +P+ +A P
Sbjct: 37 ---LLQDFELRLQEQRETNPKLKKLCECSLEQQNDLQ-----HLKENAPPHMPEKVQAVP 88
Query: 208 SSAASSSTTKVSKKTAK-SDVMTSELETDDTSETDDKISTVESATDGEVDHLTKYLTMRL 266
S AS + ++ K SD + I ++ T E D + Y+ RL
Sbjct: 89 QSTASQCLVQENEPDPKASDKPKEQGLPKKPPRKGRGIKEMQFITVEEFDSIPSYMKGRL 148
Query: 267 RLE 269
LE
Sbjct: 149 TLE 151
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 29.0 bits (65), Expect = 1.6
Identities = 6/47 (12%), Positives = 15/47 (31%)
Query: 177 VQQQPSPQPTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTA 223
+ P+P T ++ P + P+ + + + A
Sbjct: 82 LTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAA 128
>gnl|CDD|222981 PHA03096, PHA03096, p28-like protein; Provisional.
Length = 284
Score = 29.8 bits (67), Expect = 1.7
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 16/97 (16%)
Query: 47 CPICLDMLKKTM-------TTKECLHRFCSDCI---ITALRSGN--KECPTCRKKLVSKR 94
C ICL+ +K E H F CI +T E +V
Sbjct: 181 CGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVIVFIE 240
Query: 95 SLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNKSH 131
+ D I Y D+Y+ + + + K H
Sbjct: 241 KINED--LKNNIPSRYWIDDKYDKNLLSF--RYKKMH 273
>gnl|CDD|235361 PRK05184, PRK05184, pyrroloquinoline quinone biosynthesis protein
PqqB; Provisional.
Length = 302
Score = 29.8 bits (68), Expect = 1.7
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 251 TDGEVDHLTKYLTMRLRLEGS 271
TDG++DH T LT+R EG
Sbjct: 87 TDGQIDHTTGLLTLR---EGQ 104
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 29.9 bits (67), Expect = 2.1
Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 6/126 (4%)
Query: 106 ISKIYPSRDEYEAHQVRVLEKLNKSHSQAALVQSINEGI--KLQSQHRLQR--TKKNIQG 161
S EY N H + ++ KLQ+ ++ K
Sbjct: 245 SSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNHHSKHADSKLQTIEVIENHSNKSRPSS 304
Query: 162 NEENTPDISNTDQTSV--QQQPSPQPTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVS 219
+ N + ++ +S S ++ S + PKS + S SSS +
Sbjct: 305 SSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNE 364
Query: 220 KKTAKS 225
K ++
Sbjct: 365 SKQKRA 370
>gnl|CDD|223025 PHA03253, PHA03253, UL35; Provisional.
Length = 609
Score = 29.9 bits (67), Expect = 2.1
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 156 KKNIQGNEENTPDISNTDQTSVQQQP-SPQPTTSNAIKNQLSPAVPKSPEARPSSAASSS 214
+ NI D+ D+ ++ P SPQ +SN ++ S A+ S RP + SS
Sbjct: 525 ETNISDYSYPMADLDLEDEEPMEDHPHSPQSISSNNSMSRTSRALQNSQRRRPPTMFPSS 584
Query: 215 TTK 217
+ +
Sbjct: 585 SER 587
>gnl|CDD|233199 TIGR00939, 2a57, Equilibrative Nucleoside Transporter (ENT).
[Transport and binding proteins, Nucleosides, purines
and pyrimidines].
Length = 437
Score = 29.7 bits (67), Expect = 2.2
Identities = 9/56 (16%), Positives = 14/56 (25%)
Query: 145 KLQSQHRLQRTKKNIQGNEENTPDISNTDQTSVQQQPSPQPTTSNAIKNQLSPAVP 200
KL TK ++ E DQ S + + + Q
Sbjct: 208 KLDKGAGEDETKGELRSKAEQNGIPHGGDQPSPTLVLDWEKEPESPDEPQKPLKTS 263
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 29.9 bits (67), Expect = 2.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 181 PSPQPTTSNAIKNQLSPAVPKSPEARPSSAASSST 215
PSP T + + +VP P+ P++AA+ +
Sbjct: 453 PSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAA 487
>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 374
Score = 29.6 bits (66), Expect = 2.3
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 47 CPICLDMLKKT--MTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90
C IC+ K + C HRF C+ L + +CP CR +
Sbjct: 326 CAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 29.3 bits (65), Expect = 2.9
Identities = 12/72 (16%), Positives = 25/72 (34%)
Query: 160 QGNEENTPDISNTDQTSVQQQPSPQPTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVS 219
+E+ P + S P+ P + A K + A + +A + A + ++
Sbjct: 77 AASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASK 136
Query: 220 KKTAKSDVMTSE 231
K + S
Sbjct: 137 KPDPAAHTQHSP 148
Score = 27.8 bits (61), Expect = 9.6
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 167 PDISNTDQTSVQQQPSPQPTTSNAIKNQLSPAV-PKSPEARPSSAASSSTTKVSKKTAKS 225
PD++ + ++ P P A PAV P+ A AA + T+ A +
Sbjct: 68 PDLAQAPTPAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPA 127
Query: 226 DVMTS 230
D TS
Sbjct: 128 DAGTS 132
>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger. There are 8 cysteine/
histidine residues which are proposed to be the
conserved residues involved in zinc binding. The
protein, of which this domain is the conserved region,
participates in diverse functions relevant to
chromosome metabolism and cell cycle control.
Length = 73
Score = 27.0 bits (60), Expect = 3.3
Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 13/53 (24%)
Query: 47 CPIC---LDMLKKTMTTK---------ECLHRFCSDCIITALRSGNKECPTCR 87
C IC D + EC H F CI L++ CP CR
Sbjct: 22 CAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKT-RNTCPLCR 73
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 29.2 bits (66), Expect = 3.4
Identities = 12/68 (17%), Positives = 30/68 (44%)
Query: 182 SPQPTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAKSDVMTSELETDDTSETD 241
+ +P + NA+K +L + +A A +++ +K ++ + D T
Sbjct: 4 NGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRA 63
Query: 242 DKISTVES 249
+++ VE+
Sbjct: 64 NRLKKVEA 71
>gnl|CDD|213844 TIGR03657, IsdB, heme uptake protein IsdB. Isd proteins are
iron-regulated surface proteins found in Bacillus,
Staphylococcus and Listeria species and are responsible
for heme scavenging from hemoproteins. The IsdB protein
is only observed in Staphylococcus and consists of an
N-terminal hydrophobic signal sequence, a pair of tandem
NEAT (NEAr Transporter, pfam05031) domains which confers
the ability to bind heme and a C-terminal sortase
processing signal which targets the protein to the cell
wall. IsdB is believed to make a direct contact with
methemoglobin facilitating transfer of heme to IsdB. The
heme is then transferred to other cell wall-bound NEAT
domain proteins such as IsdA and IsdC.
Length = 644
Score = 29.1 bits (64), Expect = 4.0
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 170 SNTDQTSVQQQPSPQPTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAKSDVMT 229
+N D+T+ ++Q N+ K + +PA P P S + S+K +
Sbjct: 456 ANADKTNKKEQ------QDNSAKKETTPATPSKPT--TPPVEKESQKQDSQKDDNKQSPS 507
Query: 230 SELETDDTSETDDKISTVESATDGEVD 256
E E D +SE+ + GEV+
Sbjct: 508 VEKENDASSESGKDKTPATKPAKGEVE 534
>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase.
Length = 1040
Score = 28.8 bits (64), Expect = 4.2
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 39 RSLHSELMCPICLDMLKKTM------TTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92
R+L ++ C IC D + T+ EC C C R G + CP C+ +
Sbjct: 30 RNLDGQV-CEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRY-- 86
Query: 93 KRSLRADP 100
+ L+ P
Sbjct: 87 -KRLKGSP 93
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 29.0 bits (65), Expect = 4.3
Identities = 15/115 (13%), Positives = 37/115 (32%), Gaps = 15/115 (13%)
Query: 147 QSQHRLQRTKKNIQGNEENTPDISNTDQTS-VQQQPSPQPTTSNAIKNQLSPAVPKSPEA 205
S + + N Q ++ + T T+ QP T + ++ ++PE
Sbjct: 234 ISINSENIQRINSQPSKRPNNTTTTTTTTTTTTFQP---RTRKRKSIDDHKLSLNQAPEK 290
Query: 206 RPSSAASSSTT--KVSKKTAKS---------DVMTSELETDDTSETDDKISTVES 249
++ S K ++ D ++ + + + + T+ S
Sbjct: 291 FKNNTKPDDDPQSDFSDKGSRKSGSLKDVRIDNISCSVSHNGVNISISPTETIIS 345
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 28.8 bits (65), Expect = 4.3
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 162 NEENTPDISNTDQTSVQQQPSPQPTTSNAIKNQLSPAV--PKSPEARPSSAA--SSSTTK 217
N + + + T P+P N +PAV +P P A + S
Sbjct: 157 NSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQAN 216
Query: 218 VSKKTAKSDVMTSELETDDTSETDDK-ISTVESATDGEVDHLT 259
V + + + TD +ST + + V + T
Sbjct: 217 VDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPNALVMNFT 259
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 28.9 bits (64), Expect = 4.3
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 5/79 (6%)
Query: 150 HRLQRTKKNIQGNEENTPDISNTDQTSVQQQPSPQPTTSNAIKNQLSPAVPKSPEARPSS 209
HR + K Q P + N Q Q P+ QP + P
Sbjct: 195 HRHRHAPKPTQ-----QPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQP 249
Query: 210 AASSSTTKVSKKTAKSDVM 228
+ K S++ + +
Sbjct: 250 PQTEQGHKRSREQGNQEFL 268
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 28.7 bits (64), Expect = 5.0
Identities = 14/61 (22%), Positives = 21/61 (34%)
Query: 166 TPDISNTDQTSVQQQPSPQPTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAKS 225
+ D T QQ+ S T ++ PKSPE P + K + + K
Sbjct: 230 SRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKE 289
Query: 226 D 226
Sbjct: 290 S 290
>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide
formyltransferase PurN [Nucleotide transport and
metabolism].
Length = 200
Score = 27.9 bits (63), Expect = 5.1
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 70 DCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLN 128
D I A+ S + +R+ +A +L K +PSR+ ++ V L++
Sbjct: 27 DAEIVAVISDKADAY------ALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYG 79
>gnl|CDD|221242 pfam11816, DUF3337, Domain of unknown function (DUF3337). This
family of proteins are functionally uncharacterized.
This family is only found in eukaryotes. This presumed
domain is typically between 285 to 342 amino acids in
length.
Length = 320
Score = 28.3 bits (63), Expect = 5.3
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 291 LLPGNQSLRQIHDKYWKSEKPLEVYYSWKK 320
+L + +L + WKS + + Y K
Sbjct: 290 VLDPDMTLATVRALIWKSSGDIVLEYRRKG 319
>gnl|CDD|232847 TIGR00155, pqiA_fam, integral membrane protein, PqiA family. This
family consists of uncharacterized predicted integral
membrane proteins found, so far, only in the
Proteobacteria. Of two members in E. coli, one is
induced by paraquat and is designated PqiA,
paraquat-inducible protein A [Unknown function,
General].
Length = 403
Score = 28.3 bits (63), Expect = 5.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 66 RFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKI 109
R CS C T L + CP C L +R + LL++ I
Sbjct: 216 RSCSACHTTILPAQEPVCPRCSTPLYVRRRNSLQWTWALLVASI 259
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 28.6 bits (63), Expect = 5.4
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 198 AVPKSPEARPSSA-----ASSSTTKVSKKTAKSDVMTSELETDDTSETDDK 243
A+P P+ SS+ +SSS++ S ++ SD +SE + D+ +E +D+
Sbjct: 1237 AMPPCPDLSESSSTMHSSSSSSSSSCSSSSSSSDSSSSEEDGDEKNEKEDR 1287
>gnl|CDD|233731 TIGR02108, PQQ_syn_pqqB, coenzyme PQQ biosynthesis protein B. This
model describes coenzyme PQQ biosynthesis protein B, a
gene required for the biosynthesis of
pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is
required for some glucose dehydrogenases and alcohol
dehydrogenases. Note that this gene appears to be
required for PQQ in biosynthesis in Methylobacterium
extorquens (under the name pqqG) and in Klebiella
pneumoniae but that the equivalent pqqV in Acinetobacter
calcoaceticus is not necessary for heterologous
expression of PQQ biosynthesis in E. coli. Based on this
latter finding, it is suggested (Goosen, et al. 1989)
that PqqB might be a transporter or a PQQ-dependent
enzyme rather than a PQQ biosynthesis enzyme
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 302
Score = 28.2 bits (63), Expect = 6.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 251 TDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPS 285
TDGE+DH T LT+R EG F +Y +
Sbjct: 86 TDGEIDHTTGLLTLR---EGQP-----FTLYATEM 112
>gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1. Rec10 / Red1 is involved in meiotic
recombination and chromosome segregation during
homologous chromosome formation. This protein localises
to the synaptonemal complex in S. cerevisiae and the
analogous structures (linear elements) in S. pombe. This
family is currently only found in fungi.
Length = 706
Score = 28.3 bits (63), Expect = 6.1
Identities = 21/150 (14%), Positives = 48/150 (32%), Gaps = 7/150 (4%)
Query: 154 RTKKNIQGNEENTPDISNTDQTSVQQQPSPQPTTSNAIKNQLSPAVPKSPEAR--PSSAA 211
++KK + N N V + + + SP K + +S++
Sbjct: 483 KSKKQLANNNS-----QNIKSKKVVKAKTNNKANLQDVGECSSPPNNKEKNDKQTSTSSS 537
Query: 212 SSSTTKVSKKTAKSDVMTSELETDDTSETDDKISTVESATDGEVDHLTKYLTMRLRLEGS 271
+ + S + + +LE + +S + T ++ +
Sbjct: 538 VLKSDRSSIEVRNPNANVKKLEDTTYNAKFPTVSKNNAYTLVDISTSEDAVNSADDTRSV 597
Query: 272 DICDSNFGIYVSPSSNNFILLPGNQSLRQI 301
+I D + +S S+ F ++ QI
Sbjct: 598 NITDISESTTISGLSSKFPSSFTSKLQEQI 627
>gnl|CDD|235574 PRK05711, PRK05711, DNA polymerase III subunit epsilon;
Provisional.
Length = 240
Score = 27.9 bits (63), Expect = 6.3
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 109 IYPSRDEYEAHQVRVLEKLNKS 130
+ + +E AH+ R L+ L+K
Sbjct: 209 VRATDEELAAHEAR-LDLLDKK 229
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic
subunit.
Length = 1079
Score = 28.4 bits (63), Expect = 7.0
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 14/105 (13%)
Query: 31 NTEIAVSPRSLHSELMCPICLDMLKKTMTTKE------CLHRFCSDCIITALRSGNKECP 84
E P +C IC D + KT+ + C C C + GN+ CP
Sbjct: 4 EGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCP 63
Query: 85 TCR---KKLVSKRSLRADPNFDLLISKI-----YPSRDEYEAHQV 121
C+ K+ ++ D D YPS ++ + ++
Sbjct: 64 QCKTKYKRHKGSPAILGDEEEDGDADDGASDFNYPSSNQDQKQKI 108
>gnl|CDD|237798 PRK14714, PRK14714, DNA polymerase II large subunit; Provisional.
Length = 1337
Score = 28.1 bits (63), Expect = 8.1
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 47 CPICLDMLKKTMTTKECLHRFCSDC--IITALRSGNKECPTCRKKLVSKRSLRADPN 101
CP C T C DC + SG ECP C +L + +
Sbjct: 682 CPDC--------GTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVK 730
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 27.8 bits (62), Expect = 8.1
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 166 TPDISNTDQTSVQQQPSPQPTTSN-AIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAK 224
+ Q++ Q +P + + ++P RP+ VSK ++
Sbjct: 407 AAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSL 466
Query: 225 SDVMTSELETDDTSETDDKISTVESATDGEV 255
T + + I + T E+
Sbjct: 467 G-PSTLRPIQEKAEQATGNIKEAPTGTQKEI 496
>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein. SOG2 proteins in
Saccharomyces cerevisiae are involved in cell separation
and cytokinesis.
Length = 419
Score = 27.8 bits (62), Expect = 8.2
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 13/105 (12%)
Query: 152 LQRTKKNIQGNEENTPDISNTDQTSVQQQ-PSPQPTTSNAIK--NQLSPAVPKSPEARPS 208
R+ N E + TD S T S++ S A P+S E+ S
Sbjct: 194 SPRSLSNPTTLESPSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRS 253
Query: 209 SAASSSTTKVSKKTAKSDVMTSELETDDTSETDDKI-STVESATD 252
+ S S S S L+ + D+++ + +ATD
Sbjct: 254 TPTSGS---------SSINPVSGLDEAEEDRIDEQLFLKLRTATD 289
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid
protein may act as a link between the external capsid
and the internal DNA-protein core. The C-terminal 11
residues may function as a protease cofactor leading to
enzyme activation.
Length = 238
Score = 27.5 bits (61), Expect = 8.5
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 126 KLNKSHSQAALVQSINEGI-------KLQSQHRLQRTKKNIQGNEENTPDISNTDQTSVQ 178
L S Q +V+ +GI + + + L++ + + G EE P
Sbjct: 69 GLKDSGLQRKVVEGAGQGIHGLVDIGRQKVEKDLEKLLEKVLGEEEPAPQEETVADPIQA 128
Query: 179 QQPSPQPTTSNAIKNQLSPAVPKSPEARPS 208
QP P+P + L PA P+ P +
Sbjct: 129 LQPRPRPDV----EEVLVPAAPEPPSYEET 154
>gnl|CDD|236469 PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase; Provisional.
Length = 387
Score = 27.6 bits (62), Expect = 8.8
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 5 EQSGTTKSWELSMYELNRTPQEAITDN-TEIA 35
+ G TK ++LS Y L E + D EIA
Sbjct: 348 IKPGATKEFKLSTYGLTWEQVEYVADAFKEIA 379
>gnl|CDD|227418 COG5086, COG5086, Uncharacterized conserved protein [Function
unknown].
Length = 218
Score = 27.2 bits (60), Expect = 9.5
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 86 CRKKLVSKRS--LRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNKS 130
R K + K +D N +L+S YE H + ++ L S
Sbjct: 96 TRLKKIDKNLYYDLSDENSLILLSG--GELAYYEKHSLIYIDLLKDS 140
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 27.3 bits (61), Expect = 9.8
Identities = 8/52 (15%), Positives = 15/52 (28%)
Query: 166 TPDISNTDQTSVQQQPSPQPTTSNAIKNQLSPAVPKSPEARPSSAASSSTTK 217
P+ + + + P P+P K + V P +P
Sbjct: 92 PPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKA 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.123 0.348
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,726,559
Number of extensions: 1287744
Number of successful extensions: 1360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1324
Number of HSP's successfully gapped: 121
Length of query: 321
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 224
Effective length of database: 6,635,264
Effective search space: 1486299136
Effective search space used: 1486299136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (26.7 bits)