RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17011
(321 letters)
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 192 bits (490), Expect = 1e-61
Identities = 118/154 (76%), Positives = 132/154 (85%)
Query: 1 MTSTEQSGTTKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTT 60
+ + +K+WELS+YEL RTPQEAITD EI VSPRSLHSELMCPICLDMLK TMTT
Sbjct: 11 VQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTT 70
Query: 61 KECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQ 120
KECLHRFC+DCIITALRSGNKECPTCRKKLVSKRSLR DPNFD LISKIYPSRDEYEAHQ
Sbjct: 71 KECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQ 130
Query: 121 VRVLEKLNKSHSQAALVQSINEGIKLQSQHRLQR 154
RVL ++NK ++Q AL SI EG+K+Q+ +RLQR
Sbjct: 131 ERVLARINKHNNQQALSHSIEEGLKIQAMNRLQR 164
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 105 bits (263), Expect = 2e-28
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 36 VSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKR- 94
+ L+ LMC +C T ECLH FC CI+ L + +K CP C ++ R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRP 65
Query: 95 --SLRADPNFDLLISKIYPSRDEYEAHQVRVLEKLNKSHSQA 134
++R+D ++ K+ P + E + R + S A
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAHPSADAA 107
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 88.9 bits (220), Expect = 4e-22
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 4 TEQSGTTKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKEC 63
E K W + L P ++ + C C +++ + +TT C
Sbjct: 16 REDKSNAKLWNEVLASLKDRPASGSPFQLFLS----KVEETFQCICCQELVFRPITT-VC 70
Query: 64 LHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYP 111
H C DC+ + R+ CP CR L +++ + ++++++P
Sbjct: 71 QHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 87.1 bits (216), Expect = 5e-22
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 35 AVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITAL-RSGNKECPTCRKKLVSK 93
+ + EL+C IC D++ + C + +C +CI TAL S CPTC + VS
Sbjct: 6 SGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65
Query: 94 RSLRADPN 101
+L +
Sbjct: 66 DALSGPSS 73
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 87.8 bits (217), Expect = 2e-21
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 25 QEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECP 84
E ++ E + L MC C +++ + +TT EC H C DC+ + ++ CP
Sbjct: 59 DEVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKAQVFSCP 117
Query: 85 TCRKKLVSKRSLRADPNFDLLISKIYPSRDE 115
CR L + + L+ +P +
Sbjct: 118 ACRHDLGQNYIMIPNEILQTLLDLFFPGYSK 148
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 79.4 bits (196), Expect = 3e-19
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 32 TEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91
+ + + L ++C IC L T ECLH FC CI+ + CP C +
Sbjct: 3 SGSSGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVH 61
Query: 92 SKRSLRA 98
+ L
Sbjct: 62 QTQPLSG 68
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 78.3 bits (193), Expect = 2e-18
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 39 RSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRA 98
+++ L C IC + M +C H +CS CI L S +CPTC V++ L+
Sbjct: 17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFL-SYKTQCPTCCVT-VTEPDLKN 74
Query: 99 DPNFDLLISKIYPSRDE 115
+ D L+ + +R+
Sbjct: 75 NRILDELVKSLNFARNH 91
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 77.5 bits (191), Expect = 2e-18
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 34 IAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITAL-RSGNKECPTCRKKLVS 92
+ + EL+C IC D++ + C + +C +CI TAL S CPTC + VS
Sbjct: 3 LGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62
Query: 93 KRSLRADPNFDLLISKIYPSRDE 115
+L A+ ++
Sbjct: 63 PDALIANKFLRQAVNNFKNETGY 85
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb,
E3-ligase, chromosomal protein transcription regulation,
chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A*
3h8h_A*
Length = 111
Score = 72.4 bits (176), Expect = 3e-16
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 238 SETDDKISTVESATDGEVDHLTKYLTMRLRLEG------------SDICDSNFGIYVSPS 285
+ + ++++ + VDHL+KYL +RL LE + + IY++ +
Sbjct: 17 KDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATA 76
Query: 286 SNNFILLPGNQSLRQIHDKYWKSEKPLEVYYSWKK 320
S F +L G+ SL + +KYWK KP+E+YY+ K
Sbjct: 77 SGQFTVLDGSFSLELVSEKYWKVNKPMELYYAPTK 111
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 70.6 bits (173), Expect = 4e-16
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 40 SLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSK 93
++ + C C +L T EC HRFC C+ L S + +C C++ +V
Sbjct: 11 TVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSSSSPKCTACQESIVKD 63
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 70.6 bits (173), Expect = 2e-15
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 38 PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLR 97
L S+ CPICL L++ + T C HRFC CII ++R +CP + L + L
Sbjct: 12 DPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAGHKCPVDNEIL-LENQLF 69
Query: 98 ADPNFDLLISKIY-----------PSRDEYEAHQ 120
D I + E HQ
Sbjct: 70 PDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQ 103
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 69.9 bits (171), Expect = 2e-15
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSL 96
S S+ C IC++ L+ C C CI L +CP CR + R L
Sbjct: 15 SVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAP-LQLREL 73
Query: 97 RADPNFDLLISKI 109
+ + ++
Sbjct: 74 VNCRWAEEVTQQL 86
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 65.6 bits (160), Expect = 3e-14
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 43 SELMCPICLDMLK------KTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKR 94
+ + CPIC+D + + + EC H FCS C+ +L++ CPTCRKK+ KR
Sbjct: 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 58
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 66.1 bits (161), Expect = 8e-14
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSL 96
SE C IC+++L + +T C H C C + + + CP CR+++ S
Sbjct: 8 DAIPSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRY 66
Query: 97 RADPNFDL------LISKIYPSRDEYEAHQVRVLEKLNKSHSQAALV 137
N + +I K YP + + E++ + L+
Sbjct: 67 HTRRNSLVNVELWTIIQKHYPRECK-LRASGQESEEVADDYQPVRLL 112
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 62.6 bits (152), Expect = 4e-13
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 37 SPRSLHSELMCPICLDMLK------KTMTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90
+ + CPIC+D + + + EC H FCS C+ +L++ N CPTCRKK+
Sbjct: 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-CPTCRKKI 66
Query: 91 VSK 93
K
Sbjct: 67 NHK 69
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 63.8 bits (155), Expect = 5e-13
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 39 RSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRA 98
L L C C ++L++ + C H FCS+C+ CP C + L+
Sbjct: 17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCV---SDCIGTGCPVCYTP-AWIQDLKI 72
Query: 99 DPNFDLLISKI 109
+ D +I
Sbjct: 73 NRQLDSMIQLC 83
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 61.8 bits (150), Expect = 9e-13
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 43 SELMCPICLDMLKKTM------TTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSL 96
+ CPIC+D + + + EC H FCS C+ +L++ CPTCRKK+ KR
Sbjct: 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH 67
Query: 97 R 97
Sbjct: 68 P 68
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 61.9 bits (150), Expect = 2e-12
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 38 PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLR 97
P + C IC +L + T C H FC CI+ L+ CP+CR
Sbjct: 17 PAHFVKSISCQICEHILADPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75
Query: 98 ADPNFDLLISKIYPSRDEYEAHQVRVLEKLNKSH 131
+F +++ + + ++ LEK H
Sbjct: 76 PVKSFLNILNSLMVKCPAQDCNEEVSLEKY-NHH 108
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 60.5 bits (147), Expect = 2e-12
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 35 AVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS--GNKECPTCRKKLVS 92
L E++CPICLD+L+K +T +C H FC CI + G +CP C+ V
Sbjct: 11 GQFVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTS-VR 68
Query: 93 KRSLR 97
K ++R
Sbjct: 69 KNAIR 73
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 59.7 bits (145), Expect = 4e-12
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 47 CPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS-KRSLRADPNFD 103
CPICL+ CLH FC CI +R N CP C+ + S ++ +D F
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESVVHTIESDSEFG 64
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 61.3 bits (148), Expect = 7e-12
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 41 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADP 100
L ++ +C C ++L++ + C HR+CS C+ + L SG + C C + + + +
Sbjct: 28 LEAKYLCSACRNVLRRPFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE-----EG 81
Query: 101 NFDLLISKIYPSR 113
L S +P
Sbjct: 82 ISILESSSAFPDN 94
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 58.7 bits (142), Expect = 1e-11
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 40 SLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRAD 99
+ C ICL ++ C H FC C+ A G K C CR+++ + L +
Sbjct: 11 PSLTVPECAICLQTCVHPVSLP-CKHVFCYLCVKGASWLG-KRCALCRQEI-PEDFLDSG 67
Query: 100 P 100
P
Sbjct: 68 P 68
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 60.9 bits (147), Expect = 2e-11
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 43 SELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNF 102
S+ CPICL L++ + T C HRFC CII ++R +CP + L + L D
Sbjct: 17 SKYECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEIL-LENQLFPDNFA 74
Query: 103 DLLISKIY---PSRDEYEAHQVRVLEKLNKSHSQA 134
I + P+ ++R LE A
Sbjct: 75 KREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFA 109
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 58.0 bits (141), Expect = 2e-11
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKE------CPTCRKKL 90
S ++ E+ CPICL++L + ++ +C H C CI + + CP C
Sbjct: 5 SSGNVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS- 62
Query: 91 VSKRSLRADPNFDL 104
S L+ N L
Sbjct: 63 YSFEHLQ--ANQHL 74
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 58.2 bits (141), Expect = 2e-11
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKE-----CPTCRKKLV 91
+ E+ CPICL++LK+ ++ +C H FC CI S CP CR
Sbjct: 12 VLEMIKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVP-Y 69
Query: 92 SKRSLRADPNFDL 104
+L+ PN +
Sbjct: 70 PFGNLK--PNLHV 80
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 59.0 bits (143), Expect = 3e-11
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 39 RSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITAL--RSGNKECPTCRKKLVSKRSL 96
++ L CPICL+++K+ ++T +C H FC C++ L + G +CP C+ ++KRSL
Sbjct: 16 NAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKND-ITKRSL 73
Query: 97 RADPNFDL 104
+ +
Sbjct: 74 Q--ESTRF 79
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 59.3 bits (143), Expect = 4e-11
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 40 SLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSK-RSLRA 98
L +EL C IC + + +T C H FCS CI ++ ECP CRK + SK SL
Sbjct: 60 VLENELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKR-KIECPICRKDIKSKTYSLVL 117
Query: 99 DPNFDLLISKIYPSRDEYEAHQVR 122
D + +++ + E +R
Sbjct: 118 DNCINKMVNNLSSEVKERRIVLIR 141
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 56.6 bits (137), Expect = 6e-11
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS 92
+ L E C IC+D + C H FC CI ++ CP CR ++
Sbjct: 8 RVKQLTDEEECCICMDGRADLILP--CAHSFCQKCIDKWSDR-HRNCPICRLQMTG 60
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 56.8 bits (137), Expect = 7e-11
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRK 88
C IC + + TK C H FC C + R+ C C +
Sbjct: 16 FRCFICRQAFQNPVVTK-CRHYFCESCALEHFRA-TPRCYICDQ 57
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 56.5 bits (137), Expect = 8e-11
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 37 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCII-----TALRSGNKECPTCRKKLV 91
++ E+ CPICL++L + ++ +C H FC C+ + L G CP CR
Sbjct: 12 ILVNVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRIS-Y 69
Query: 92 SKRSLRADPNFDL 104
++R PN +
Sbjct: 70 QPENIR--PNRHV 80
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 60.4 bits (145), Expect = 1e-10
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 30 DNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALR-SGNKECPT--C 86
D ++ + + EL CPI + + +++C H F D I L+ ++CP C
Sbjct: 169 DEDDLQIEGGKI--ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAAC 226
Query: 87 RKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQ 120
+ + S R DP +L KI ++ E +
Sbjct: 227 SQVV-SMRDFVRDPIMELRC-KIAKMKESQEQDK 258
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 55.1 bits (133), Expect = 1e-10
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90
L C C K CLH CS C L + +CP C+
Sbjct: 6 FLRCQQCQAEAKCPKLL-PCLHTLCSGC----LEASGMQCPICQAPW 47
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 60.2 bits (145), Expect = 2e-10
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 14 ELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCII 73
+L+ + + + +C IC + K C H C+ C+
Sbjct: 302 DLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEP-CGHLMCTSCLT 360
Query: 74 TALRSGNKECPTCRKKLVSKRSLRADPNFD 103
+ S + CP CR ++ + D FD
Sbjct: 361 SWQESEGQGCPFCRCEIKGTEPIVVD-PFD 389
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 51.9 bits (125), Expect = 2e-09
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 35 AVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKE--CPTC 86
+ + +L E C +CL+ LK+ + EC H FC CI ++ CP C
Sbjct: 6 SGALENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVC 58
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 52.0 bits (125), Expect = 2e-09
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 35 AVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRS--GNKECPTC 86
L E++CPICLD+L+K +T +C H FC CI + G +CP C
Sbjct: 11 GQFVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 52.4 bits (126), Expect = 2e-09
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 40 SLHSELMCPICLDMLKKTMTT---KECLHRFCSDCIITALRSGNK--ECPTCRK--KLVS 92
+L L CPIC++ + C H C C+ L S CP C K ++ S
Sbjct: 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70
Query: 93 KRSLRADPNFDLL 105
L N +L
Sbjct: 71 LTQLT--DNLTVL 81
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 51.7 bits (123), Expect = 1e-08
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 44 ELMCPICLDMLK------KTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKR 94
+ CPIC+D + + + EC H FCS C+ +L++ CPTCRKK+ KR
Sbjct: 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 62
Score = 46.7 bits (110), Expect = 9e-07
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 24 PQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMT------TKECLHRFCSDCIITALR 77
P N + + CPIC+D + + + EC H FCS C+ +L+
Sbjct: 52 PTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 111
Query: 78 SGNKECPTCRKKLVSKR 94
CPTCRKK+ KR
Sbjct: 112 -NANTCPTCRKKINHKR 127
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 49.6 bits (118), Expect = 2e-08
Identities = 12/51 (23%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
Query: 44 ELMCPICLDML----KKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90
+ CP C + C H C C+ G CP C L
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 49.5 bits (118), Expect = 2e-08
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 47 CPICLDMLKKTMTTKECLHRFCSDCIITALR-SGNKECPTCRKKL 90
C IC +L + + + C R C+ + + CP C
Sbjct: 18 CNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 48.6 bits (116), Expect = 5e-08
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 43 SELMCPICLDMLKKTMTTKE--CLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADP 100
S L CP+C + + ++ C H F CI+ L + CP CRK L + + P
Sbjct: 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATNPP 72
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 47.6 bits (114), Expect = 7e-08
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 40 SLHSELMCPICLDMLK---KTMTTKECLHRFCSDCIITALRSGNKECPTCRK 88
S S CPICL+ + C H C L+ G + CP C
Sbjct: 3 SGSSG--CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR-CPLCSG 51
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 47.7 bits (114), Expect = 1e-07
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 43 SELMCPICLDMLKKTMTTKE--CLHRFCSDCIITALRSGNKECPTCRKKL 90
E+ CPIC K E C H F C+ L+ + CP CR
Sbjct: 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMF 87
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 47.2 bits (112), Expect = 1e-07
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 42 HSELMCPICLDMLK---KTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKR 94
C C K + EC H F + C+ ++ N CP C++ V +R
Sbjct: 24 QVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQR 78
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 45.9 bits (108), Expect = 5e-07
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 34 IAVSPRSLHSELMCPICLDMLKKTMTT---KECLHRFCSDCIITALRSGNKECPTCRKK 89
++ SP + + CP+C++ L+ C ++ C C N CP CRK
Sbjct: 1 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKP 59
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 45.6 bits (107), Expect = 9e-07
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 47 CPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLI 106
C C +K C H FC DC I + G+K CP C + F I
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFMCSI 63
Query: 107 S----KIYPSRDEYEAH 119
+ Y S+ + +AH
Sbjct: 64 VQGCKRTYLSQRDLQAH 80
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 42.8 bits (101), Expect = 4e-06
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 39 RSLHSELMCPICLDMLKKTMTTKE--CLHRFCSDCIITALRSGNKECPTCRKKLVS 92
+ L+ +C +CL+ K C H F C+I L K CP C ++
Sbjct: 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene,
phosphorylation, alternative splicing, HOST-virus
interaction, UBL conjugation pathway, zinc-finger,
polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB:
2vjf_A* 2hdp_A
Length = 64
Score = 41.7 bits (98), Expect = 9e-06
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 37 SPRSLHSELMCPICLDMLKKT-MTTKECLHRF-CSDCIITALRSGNKECPTCRKK 89
S L++ C IC K + + H C C L+ NK CP CR+
Sbjct: 1 SSLPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCA-KKLKKRNKPCPVCRQP 54
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 41.1 bits (96), Expect = 4e-05
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNK-----ECPT--CRKKLVSKRSL 96
CPI + +KK + K C H + D I+ + S K CP C + K L
Sbjct: 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66
Query: 97 RADPNFDLLI 106
D I
Sbjct: 67 IQDEALRRAI 76
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 43.2 bits (101), Expect = 4e-05
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 42 HSELMCPICLDMLKKTMTTKECLHRFCSDCIITALR-SGNKECPTCRKKL 90
+ +C IC +L + + + C R C+ + + CP C
Sbjct: 178 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase,
Zn binding domain, metal zinc, zinc-finger, metal
binding protein; NMR {Homo sapiens}
Length = 69
Score = 39.3 bits (92), Expect = 9e-05
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 43 SELMCPICLDMLKKTMTTKE--CLHRFCSDCIITALRSGNKECPTCRKKLVSKRS 95
+E C ICL +L++ + C+H F C+ L + NK+CP CR + ++
Sbjct: 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQLP 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 39.1 bits (91), Expect = 1e-04
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 43 SELMCPICLDMLK--KTMTTKECLHRFCSDCIITALRS 78
C +CL + T +C FC+ C+ +
Sbjct: 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL 41
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 38.3 bits (89), Expect = 2e-04
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 46 MCPICLDMLKKT-MTTKECLHRF-CSDCIITALRSGNKECPTCRKK 89
C +C + + H C C L+ CP C+K+
Sbjct: 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCA-RRLKKAGASCPICKKE 53
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 56/381 (14%), Positives = 110/381 (28%), Gaps = 83/381 (21%)
Query: 5 EQSGTTKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSEL------MCP---ICLD-ML 54
+ S T+ + L Q N VS + +L + P + +D +L
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 55 ---KKTMTTKECL-HRF--CSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISK 108
K + CL ++ D I L N P +++ K + DPN+
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 109 IYPSRDEYEAHQVRVLEKL-NKSHSQAALV------QSINEGIKLQSQHRLQRTKKNIQG 161
+ + Q + L +K + LV L + L T+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-ILLTTR----- 273
Query: 162 NEENTPDISNTDQTSVQQQPSPQPTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVS-- 219
++ T +S T + T + +K+ L + P+ P +++ ++S
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 220 -----------------KKTAKSDVMTSELETDDTSET------------DDKISTV--- 247
+ ++ S L + +E I T+
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 248 ---ESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSSNNFILLPGNQSLRQIH-- 302
+V + L +E +S I S L ++ +H
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTISIP----SIYLELKVKLENEYALHRS 448
Query: 303 --DKYWKSEKPLEVYYSWKKV 321
D Y + + S +
Sbjct: 449 IVDHY----NIPKTFDSDDLI 465
Score = 39.8 bits (92), Expect = 0.001
Identities = 58/371 (15%), Positives = 101/371 (27%), Gaps = 125/371 (33%)
Query: 44 ELMCPICLDMLKKTMTTKECLHRFCS-------DCIITALRSGNKECPTCRKKLVSKRSL 96
C DM K ++ +E H S + L S +E +K V + L
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE---MVQKFV-EEVL 87
Query: 97 RADPNFDLLISKIY-----PS--RDEYEAHQ------VRVLEKLN----KSHSQ--AALV 137
R N+ L+S I PS Y + +V K N + + + AL+
Sbjct: 88 R--INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 138 Q-SINEGIKLQ---------------SQHRLQRTKKN----IQGNEENTPD--------- 168
+ + + + +++Q + N+P+
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 169 ISNTDQTSVQQ--QPSPQPTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAKS- 225
+ D + S ++I+ +L SK
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAEL------------------RRLLKSKPYENCL 247
Query: 226 ----DVMTSE------------LETDDTSETDD-------KISTVESA---TDGEVDHL- 258
+V ++ L T TD IS + T EV L
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 259 TKYLTMR---LRLEGSDICDSN------FG--IYVSPSSNNFILLPGNQSLRQIHDKYWK 307
KYL R L E + +N I ++ + L I +
Sbjct: 308 LKYLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 308 SEKPLEV--YY 316
+P E +
Sbjct: 365 VLEPAEYRKMF 375
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 39.4 bits (91), Expect = 2e-04
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 21/63 (33%)
Query: 47 CPICLDMLKKTMTTKE-----------------CLHRFCSDCIITALRSGNKE----CPT 85
C IC++ L + C H F C++ +GNK+ CP+
Sbjct: 28 CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87
Query: 86 CRK 88
C+
Sbjct: 88 CKT 90
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 37.6 bits (88), Expect = 2e-04
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 47 CPICL------DMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91
C +CL + + + C H F ++C+ L S + CP CR +V
Sbjct: 8 CAVCLAELEDGEEAR-FLP--RCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 41.5 bits (96), Expect = 2e-04
Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 25 QEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDC---IITALRSGNK 81
++ + ++ E+ ++ S L CPI +K + C H C D + + L+
Sbjct: 230 KKTLREDEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTW 289
Query: 82 ECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYE 117
+CP C+ ++ +L D ++ + ++ E
Sbjct: 290 QCPVCQID-IALENLAISEFVDDILQNCQKNVEQVE 324
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 41.1 bits (95), Expect = 3e-04
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 25 QEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDC---IITALRSGNK 81
+E +T + + ++ SL LMCP+ L C H C D + +
Sbjct: 196 KEKLTADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTW 255
Query: 82 ECPTCRKKLVSKRSLRADPNFDLLISKI 109
CP C KK + SL D F +++
Sbjct: 256 ICPVCDKK-AAYESLILDGLFMEILNDC 282
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 36.2 bits (84), Expect = 0.001
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 44 ELMCPICLDMLKKTMTTKE--CLHRFCSDCIITALRSGNKECPTCRKKL 90
+ +C +C+ + + C H F + C+ L++ N+ CP CR
Sbjct: 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADS 70
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 35.9 bits (83), Expect = 0.001
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 39 RSLHSELMCPICLDMLKKTMTTKECLHRF-CSDCIITALRSGNKECPTCRKKLVSK 93
R L ++C +C + + T C H C C A + + CP CR ++
Sbjct: 13 RKLKEAMLCMVCCEE-EINSTFCPCGHTVCCESC---AAQL--QSCPVCRSRVEHV 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 37.1 bits (85), Expect = 0.005
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 17/67 (25%)
Query: 44 ELMCPICLDMLKKTMTTKE-------CLHRFCSDCIITALRSGNK----------ECPTC 86
EL C IC C+ + + C+ ++ +CP C
Sbjct: 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFC 367
Query: 87 RKKLVSK 93
+ KL +
Sbjct: 368 KAKLSTS 374
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics,
ring-finger, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
g.44.1.1
Length = 93
Score = 34.3 bits (78), Expect = 0.009
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 30 DNTEIAVSPRSLHSELMCPICLDMLKKTMTTK------ECLHRFCSDCIITALRSGNKEC 83
+ P C IC D + T+ EC C C R G + C
Sbjct: 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNC 61
Query: 84 PTCR 87
P C+
Sbjct: 62 PQCK 65
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.44.1.3
Length = 93
Score = 34.0 bits (77), Expect = 0.011
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 37 SPRSLHSELMCPICLDMLKKTMTTK---ECLHRFCSDCIITALRS----GNKECPTCRK 88
SP + L C IC + L+ T + H+FC C ++++ G CP+ K
Sbjct: 8 SPMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEK 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 33.2 bits (76), Expect = 0.011
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 39 RSLHSELMCPICLDMLKKTMTTKECLHRF-CSDCIITALRSGNKECPTCRKKLVSK 93
R L E +C IC+D + C H C C A +CP C + K
Sbjct: 20 RRLQEEKLCKICMDR-NIAIVFVPCGHLVTCKQC---AEAV--DKCPMCYTVITFK 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.012
Identities = 32/237 (13%), Positives = 61/237 (25%), Gaps = 82/237 (34%)
Query: 23 TPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTT-----KECLHRFCSD------- 70
P E + E +P L + + + + + CL F +
Sbjct: 43 EPTEGFAADDEPT-TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 71 -CIITALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSRDEYEAHQV--RVLEKL 127
+ L N K+L+ K Y A + R +K
Sbjct: 102 HALAAKLLQENDTTLVKTKELI----------------KNY-----ITARIMAKRPFDKK 140
Query: 128 NKSHSQAALVQSINEGIKLQSQHRLQRTKKNI------QGNEENT-PDISNTDQTSVQQQ 180
+ S AL +++ EG + QGN ++ ++ + QT
Sbjct: 141 SNS----ALFRAVGEG------------NAQLVAIFGGQGNTDDYFEELRDLYQTY---H 181
Query: 181 PSPQPTTSNAIK--NQLSPAVPKS----------------PEARPSSAASSSTTKVS 219
+ + ++L + P P S +S
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-IS 237
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 35.5 bits (81), Expect = 0.025
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 4/89 (4%)
Query: 16 SMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITA 75
+ +E + E + + E + P+ ++K + I
Sbjct: 863 KLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAH 922
Query: 76 LRSGNKECPTCRKKLVSKRSLRADPNFDL 104
L S + P R L + PN +L
Sbjct: 923 LLSDST-DPFNRMPL-KLEDVT--PNEEL 947
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3
ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2
PDB: 1n87_A
Length = 61
Score = 31.6 bits (72), Expect = 0.041
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 43 SELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90
S ++C I + ++ + + + F + ++ P + L
Sbjct: 2 SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPL 48
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 32.1 bits (72), Expect = 0.069
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 46 MCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKR 94
+ T+ C H F CI L++ + CP ++ ++
Sbjct: 56 ANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQK 103
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural
genomics, PSI-2, protein structure initiative; NMR
{Escherichia coli} SCOP: g.41.18.1
Length = 101
Score = 31.5 bits (71), Expect = 0.085
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 34 IAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90
+ PR H EL CP C +L ++ H C C CP C + L
Sbjct: 22 SGLVPRGSHMELHCPQCQHVL-----DQDNGHARCRSCGEFIEMKAL--CPDCHQPL 71
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 31.7 bits (71), Expect = 0.11
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 46 MCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKR 94
+ T+ C H F CI L++ + CP ++ ++
Sbjct: 67 ANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQK 114
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 30.5 bits (69), Expect = 0.11
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 37 SPRSLHSELMCPICLDMLKKTMTTKECLHR-FCSDCIITALRSGNKECPTCRKKLVSK 93
S + C +C + C H C C ++CP CR+ +
Sbjct: 8 VEPSEENSKDCVVCQNG-TVNWVLLPCRHTCLCDGC---VKYF--QQCPMCRQFVQES 59
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 30.9 bits (69), Expect = 0.16
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 22 RTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNK 81
+ P+ + + + + C C K + H C +C+ L N+
Sbjct: 7 KAPESKDSPRASL-IPDATHLGPQFCKSCWFENKGLVECNN--HYLCLNCLTLLLSVSNR 63
Query: 82 ECPTCRKKLVSKRSLRADP 100
CP C+ L +K A P
Sbjct: 64 -CPICKMPLPTKLRPSAAP 81
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.6 bits (71), Expect = 0.26
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 23 TPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDC 71
T + +L+ L CP C K + C+ C
Sbjct: 3 TRESIDKRAGRRG---PNLNIVLTCPECKVYPPKIVERFSEGDVVCALC 48
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 30.7 bits (68), Expect = 0.30
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 37 SPRSLHSELMCPICLDMLKKTMTTK----ECLHRFCSDCIITALRSGNKECPTCRKKLVS 92
S + +E C CL + + ++ EC C C C C V
Sbjct: 61 SDTAHLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARVV 120
Query: 93 K 93
K
Sbjct: 121 K 121
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 30.7 bits (67), Expect = 0.61
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 38 PRSLHSELMCPICLDMLKKTMTTKECLHR-FCSDCIITALRSGNKECPTCRKKLVSK 93
R L E C +C+D + ++ C H C +C + ++CP CR +
Sbjct: 289 LRRLQEERTCKVCMDK-EVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGT 339
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 29.1 bits (64), Expect = 0.84
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 7/80 (8%)
Query: 17 MYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTK----ECLHRFCSDCI 72
M + + + D E + C +C + L + +C C+ C
Sbjct: 28 METMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87
Query: 73 ITALRSGNKE---CPTCRKK 89
+ + C C ++
Sbjct: 88 VETSNNRPHPVWLCKICLEQ 107
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 76
Score = 28.0 bits (62), Expect = 1.0
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 35 AVSPRSLHSELMCPICLDMLKKTMTTK----ECLHRFCSDCIITALRSGNKECPTCRKK 89
A +S+ C C + L + C H C DC I +G C C
Sbjct: 16 AKRGSQHYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE-SNGTWRCKVCSGP 73
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 28.4 bits (63), Expect = 3.5
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 178 QQQPSPQPTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTAKSDVMTSELETDDT 237
+ P+ T S A + LS K + S + + ++ M E + D
Sbjct: 17 RGSHMPKETPSKAAADALSDLEIKDSK----SNLNKELETLREENRVKSDMLKEKLSKDA 72
Query: 238 SETDDKISTVE 248
+ + +
Sbjct: 73 ENHKAYLKSHQ 83
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.2
Length = 98
Score = 26.7 bits (59), Expect = 3.8
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNFD 103
E + PI ++ + I L S P R L + +R PN +
Sbjct: 22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQT-DPFNRSPL-TMDQIR--PNTE 77
Query: 104 L 104
L
Sbjct: 78 L 78
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 4.4
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 5 EQSGTTKSWE--LSMYELNRTPQEAITDNTE 33
+Q+ K + L +Y + P AI E
Sbjct: 19 KQA--LKKLQASLKLYADDSAPALAIKATME 47
Score = 26.8 bits (58), Expect = 7.0
Identities = 5/27 (18%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 189 NAIKNQLSPAV-PKSPEARPSSAASSS 214
A+K +L ++ + ++ P+ A ++
Sbjct: 20 QALK-KLQASLKLYADDSAPALAIKAT 45
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 26.9 bits (59), Expect = 4.4
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 14/56 (25%)
Query: 46 MCPICLDMLKKTMTTKECLHRFCSDC--------------IITALRSGNKECPTCR 87
+C CL ++ K C+DC + +++ +C C+
Sbjct: 7 ICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic
transcription factor, zinc binding protein, ring
finger; NMR {Homo sapiens} SCOP: g.49.1.2
Length = 59
Score = 25.6 bits (56), Expect = 4.8
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 36 VSPRSLHSELMCPICLDMLKKT--MTTKECLHRFCSDC 71
+ + E C C LK C + FC DC
Sbjct: 7 IPLEEYNGERFCYGCQGELKDQHVYVCAVCQNVFCVDC 44
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA
binding, structure; NMR {Human immunodeficiency virus 1}
SCOP: j.40.1.1
Length = 86
Score = 26.0 bits (58), Expect = 5.9
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 166 TPDISNTDQTSVQQQPSPQP 185
T Q + +QPS QP
Sbjct: 58 PSQGGQTHQDPIPKQPSSQP 77
>3p28_A Green fluorescent protein; circular permutation, fluorescence, beta
barrel; HET: CSY; 1.80A {Aequorea victoria}
Length = 239
Score = 27.3 bits (60), Expect = 6.1
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 227 VMTSELETDDTSETDDKISTVESATDGEVDHLTKYLTMRLRLEGSDICDSNFGIYVSPSS 286
++ +LE + S V D + + + +R +E + ++ +P
Sbjct: 86 ILGHKLEYNYNSHN------VYITADKQKNGIKANFKIRHNIEDGSVQLADHYQQNTPIG 139
Query: 287 NNFILLPGN 295
+ +LLP N
Sbjct: 140 DGPVLLPDN 148
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin
ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana}
SCOP: g.44.1.2
Length = 78
Score = 25.6 bits (57), Expect = 6.3
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 43 SELMCPICLDMLKKTMT---TKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRAD 99
CPI L++ M + I L +G+K CP ++ L+ L
Sbjct: 7 EYFRCPISLEL----MKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA-GLT-- 59
Query: 100 PNFDL 104
PN+ L
Sbjct: 60 PNYVL 64
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human
immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A
1tbc_A 1tiv_A 1k5k_A
Length = 86
Score = 25.7 bits (57), Expect = 6.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 166 TPDISNTDQTSVQQQPSPQP 185
S T Q S+ +QP+ Q
Sbjct: 58 AHQNSQTHQASLSKQPTSQS 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.123 0.348
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,245,727
Number of extensions: 224679
Number of successful extensions: 565
Number of sequences better than 10.0: 1
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 97
Length of query: 321
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 227
Effective length of database: 4,077,219
Effective search space: 925528713
Effective search space used: 925528713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.5 bits)