RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17011
(321 letters)
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 65.0 bits (158), Expect = 3e-14
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 23 TPQEAITDNTEIAVSPRSLHSEL-MCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNK 81
TPQ+ I E + S +C IC + K C H C+ C+ + S +
Sbjct: 1 TPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEP-CGHLMCTSCLTSWQESEGQ 59
Query: 82 ECPTCRKKLVSKRSLRADP 100
CP CR ++ + DP
Sbjct: 60 GCPFCRCEIKGTEPIVVDP 78
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 64.5 bits (157), Expect = 4e-14
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 38 PRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLR 97
P + C IC +L + T C H FC CI+ L+ CP+CR L
Sbjct: 17 PAHFVKSISCQICEHILADPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPC-FPTDLE 74
Query: 98 ADPNF 102
+
Sbjct: 75 SPVKS 79
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 57.3 bits (138), Expect = 1e-11
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 47 CPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVS-KRSLRADPNFD 103
CPICL+ CLH FC CI +R N CP C+ + S ++ +D F
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESVVHTIESDSEFG 64
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 58.2 bits (140), Expect = 2e-11
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 39 RSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITAL--RSGNKECPTCRKKLVSKRSL 96
++ L CPICL+++K+ ++TK C H FC C++ L + G +CP C+ + +KRSL
Sbjct: 16 NAMQKILECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDI-TKRSL 73
Query: 97 RADPNFDLLISKI 109
+ F L+ ++
Sbjct: 74 QESTRFSQLVEEL 86
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 54.5 bits (131), Expect = 1e-10
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 44 ELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90
L C C K CLH CS C+ + +CP C+
Sbjct: 6 FLRCQQCQAEAKCPKLLP-CLHTLCSGCL----EASGMQCPICQAPW 47
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 53.3 bits (128), Expect = 2e-10
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 40 SLHSELMCPICLDMLK---KTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLV 91
++ + C +CL L+ + C H F ++C+ L S + CP CR +V
Sbjct: 1 AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 50.5 bits (120), Expect = 3e-09
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 44 ELMCPICLDMLKKTMTTK----ECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRAD 99
+ CP C + + K C H C C+ G CP C L K + R
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL-RKSNFR-V 60
Query: 100 PNFD 103
F+
Sbjct: 61 QLFE 64
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 49.8 bits (118), Expect = 1e-08
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 39 RSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRA 98
L L C C ++L++ + C H FCS+C+ + CP C + L+
Sbjct: 17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI---GTGCPVCYTP-AWIQDLKI 72
Query: 99 DPNFDLLISKIYPSRDEYEAHQV 121
+ D +I R+ +++
Sbjct: 73 NRQLDSMIQLCSKLRNLLHDNEL 95
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 45.1 bits (106), Expect = 2e-07
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 45 LMCPICLDMLK---KTMTTKECLHRFCSDCIITALRSGNKECPTCRKKL 90
+ CP+C++ L+ C ++ C C N CP CRK
Sbjct: 1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 45.1 bits (106), Expect = 3e-07
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 43 SELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPNF 102
CPI L+++K + + I L +G+K CP ++ L L PN+
Sbjct: 7 EYFRCPISLELMKDPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETL-LHAGLT--PNY 62
Query: 103 DL 104
L
Sbjct: 63 VL 64
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 43.7 bits (102), Expect = 8e-07
Identities = 11/51 (21%), Positives = 14/51 (27%), Gaps = 5/51 (9%)
Query: 44 ELMCPICLDMLKKTMTT----KECLHRFCSDCIITALRSG-NKECPTCRKK 89
+C IC + L L C+ T L N C C
Sbjct: 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 41.7 bits (97), Expect = 3e-06
Identities = 6/57 (10%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 45 LMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKKLVSKRSLRADPN 101
++C I + ++ + + + F + ++ P + L + + P+
Sbjct: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVPS 56
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 41.0 bits (95), Expect = 1e-05
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 39 RSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKK 89
R + L I +++++ T + I L+ P R
Sbjct: 2 RDIPDYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSP 51
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 40.9 bits (95), Expect = 1e-05
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 25 QEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECP 84
+ I D + ++ + C + C H F CI L++ + CP
Sbjct: 28 RNHIMDLCIECQANQASATSEECTVA---------WGVCNHAFHFHCISRWLKT-RQVCP 77
Query: 85 TCRKKLVSKR 94
++ ++
Sbjct: 78 LDNREWEFQK 87
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human
(Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 36.7 bits (84), Expect = 5e-04
Identities = 6/44 (13%), Positives = 11/44 (25%)
Query: 43 SELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTC 86
E + PI ++ + I L S +
Sbjct: 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNR 64
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 34.6 bits (78), Expect = 0.004
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 7 SGTTKSWELSMYELNRTPQEAITDNTEIAVSPRSLHSELMCPICLDMLKKTMTTK--ECL 64
SG++ E + + + A ++ I + ++ S L + + +C
Sbjct: 3 SGSSGEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS 62
Query: 65 HRFCSDCIITALRSGNKE----CPTCRKKLVSKR 94
H F C++ +GNK+ CP+C+ K
Sbjct: 63 HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 30.8 bits (69), Expect = 0.047
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 9/54 (16%)
Query: 43 SELMCPICLDMLKKTMTTK--ECLHRFCSDCIITALRSGNKE-------CPTCR 87
C +CL T +C FC+ C+ + KE CP
Sbjct: 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 30.9 bits (69), Expect = 0.090
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 46 MCPICLDMLKKTMTTK----ECLHRFCSDCIITALRSGNKE---CPTCRKKLVSK 93
C +C + L + +C C+ C + + C C ++
Sbjct: 50 RCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVW 104
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7,
IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 93
Score = 27.5 bits (61), Expect = 0.66
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Query: 38 PRSLHSELMCPICLDMLKKTMTTK------ECLHRFCSDCIITALRSGNKECPTCR 87
P C IC D + T+ EC C C R G + CP C+
Sbjct: 10 PLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCK 65
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 26.5 bits (58), Expect = 0.97
Identities = 7/30 (23%), Positives = 8/30 (26%), Gaps = 5/30 (16%)
Query: 47 CPICLDMLKKT-----MTTKECLHRFCSDC 71
C C T +C FC C
Sbjct: 21 CAQCSFGFIYEREQLEATCPQCHQTFCVRC 50
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 27.0 bits (59), Expect = 1.2
Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 47 CPIC---LDMLKKTMTTKECLHRFCSDC---IITALRSGNKE---CPTCRKKLVSKRSLR 97
C C + KK K C FC+ C R+GN + C C L S
Sbjct: 12 CYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGSSDN 71
Query: 98 ADPN 101
A
Sbjct: 72 ASKW 75
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 26.5 bits (58), Expect = 1.2
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 10/55 (18%)
Query: 46 MCPIC---LDMLKKTMTTKECLHRFCSDCI---ITALRSGNKE----CPTCRKKL 90
+C C + + C FC C + G ++ C C L
Sbjct: 15 VCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAAL 69
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C
[TaxId: 556]}
Length = 353
Score = 27.8 bits (61), Expect = 1.8
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 195 LSPAVPKSPEARPSSAASSSTTKVSKKTAKSDVMTSELETDDTSETDDKISTVESATDGE 254
++ AV K+ + ++ K L T D I+ + G+
Sbjct: 15 VTGAVSKTATSMQDIVNIIDAARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQ 74
Query: 255 V-----DHLTKYLTMRLRLEGSDICDSNFGIYVSPSSN 287
K T + + G++ +NFGI++ SS+
Sbjct: 75 WSKDPRGVEIKEFTKGITIIGANGSSANFGIWIKKSSD 112
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain
{Physarum polycephalum [TaxId: 5791]}
Length = 342
Score = 27.6 bits (61), Expect = 2.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 185 PTTSNAIKNQLSPAVPKSPEARPSSAASSSTTKVSKKTA 223
P S+AI + L PA PK P+ +PS + KV TA
Sbjct: 16 PAPSSAINSHLQPAKPKVPQKKPSKWDPPAEFKVDLSTA 54
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 25.0 bits (54), Expect = 2.9
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 46 MCPIC---LDMLKKTMTTKECLHRFCSDCI---ITALRSGNKE--CPTCRKKL 90
C C + + ++C + FC++C S C C L
Sbjct: 10 NCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDL 62
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 61
Score = 24.5 bits (53), Expect = 3.9
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 65 HRFCSDCIITALRSGNKECPTCRKKLVSKR 94
H C + + + +G CP C + +
Sbjct: 32 HIHCLNPPLPEIPNGEWLCPRCTCPALKGK 61
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 163
Score = 25.8 bits (56), Expect = 5.6
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 42 HSELMCPICLDMLKKTMTTKECLHRFCSDCIITALRSGNKECPTCRKK 89
H + M P+ + + L D ++ R+G E K+
Sbjct: 32 HGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLKQ 79
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 22.7 bits (48), Expect = 8.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 82 ECPTCRKKLVSKRSLR 97
ECPTC KK +SK L+
Sbjct: 2 ECPTCHKKFLSKYYLK 17
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 23.8 bits (51), Expect = 9.7
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 47 CPIC---LDMLKKTMTTKECLHRFCSDC 71
C IC +L + + C FC +
Sbjct: 8 CMICSKKFSLLNRKHHCRSCGGVFCQEH 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.123 0.348
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,039,203
Number of extensions: 43221
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 34
Length of query: 321
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,240,546
Effective search space: 292768856
Effective search space used: 292768856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.7 bits)