Query psy17017
Match_columns 442
No_of_seqs 210 out of 1560
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 19:38:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0466 Lon ATP-dependent Lon 100.0 1.8E-61 3.9E-66 512.6 36.7 289 83-442 9-301 (782)
2 PRK10787 DNA-binding ATP-depen 100.0 1.6E-58 3.4E-63 511.4 37.1 287 83-442 10-300 (784)
3 KOG2004|consensus 100.0 5.8E-57 1.3E-61 475.8 32.8 327 72-442 57-389 (906)
4 TIGR00763 lon ATP-dependent pr 100.0 1.2E-55 2.5E-60 490.6 38.2 287 85-442 1-298 (775)
5 PF02190 LON: ATP-dependent pr 100.0 9.9E-28 2.1E-32 223.6 19.9 193 83-343 1-205 (205)
6 COG2802 Uncharacterized protei 99.8 9.6E-20 2.1E-24 172.0 19.7 191 83-346 11-209 (221)
7 smart00464 LON Found in ATP-de 98.9 1.8E-08 3.8E-13 83.7 10.4 39 84-122 2-40 (92)
8 KOG4159|consensus 98.2 5E-06 1.1E-10 86.4 8.4 94 81-176 174-268 (398)
9 PRK10865 protein disaggregatio 97.9 3.8E-05 8.2E-10 87.6 10.3 102 296-404 383-490 (857)
10 TIGR01242 26Sp45 26S proteasom 95.8 0.00028 6.1E-09 72.7 -6.8 69 369-441 9-77 (364)
11 TIGR02903 spore_lon_C ATP-depe 82.8 5.6 0.00012 44.3 9.0 60 326-385 62-121 (615)
12 PF01988 VIT1: VIT family; In 66.8 14 0.00031 35.2 6.2 52 364-419 57-108 (213)
13 KOG1400|consensus 66.6 4.8 0.0001 41.3 2.9 48 300-347 273-320 (371)
14 PF14335 DUF4391: Domain of un 57.5 34 0.00075 32.9 6.9 49 329-382 173-221 (221)
15 PF08580 KAR9: Yeast cortical 55.8 1.9E+02 0.0041 32.9 13.2 100 323-422 200-320 (683)
16 PRK03992 proteasome-activating 54.2 0.33 7.1E-06 50.8 -8.2 69 372-440 17-85 (389)
17 PF04568 IATP: Mitochondrial A 52.4 9.2 0.0002 32.6 1.8 29 373-401 72-100 (100)
18 PF04949 Transcrip_act: Transc 51.7 97 0.0021 28.4 8.2 57 343-402 39-95 (159)
19 PF13870 DUF4201: Domain of un 49.5 1.9E+02 0.0041 26.6 10.3 72 343-421 61-132 (177)
20 COG1460 Uncharacterized protei 49.0 92 0.002 27.2 7.4 80 261-345 29-112 (114)
21 PF08776 VASP_tetra: VASP tetr 42.3 85 0.0018 22.4 5.0 34 345-383 3-36 (40)
22 PRK13979 DNA topoisomerase IV 39.2 2.5E+02 0.0055 33.2 11.3 78 301-384 412-492 (957)
23 COG5493 Uncharacterized conser 39.1 3.6E+02 0.0079 26.0 12.3 47 373-419 77-128 (231)
24 TIGR03499 FlhF flagellar biosy 37.6 96 0.0021 30.9 6.8 29 391-419 134-162 (282)
25 TIGR01837 PHA_granule_1 poly(h 37.2 2.7E+02 0.0058 24.2 8.6 32 368-402 76-107 (118)
26 PF05591 DUF770: Protein of un 36.6 1E+02 0.0022 28.4 6.1 44 367-418 113-156 (157)
27 TIGR01061 parC_Gpos DNA topois 34.0 1E+02 0.0022 35.3 6.9 96 323-421 364-468 (738)
28 PF05266 DUF724: Protein of un 33.3 1.4E+02 0.003 28.3 6.7 21 331-351 92-112 (190)
29 PF04977 DivIC: Septum formati 31.8 70 0.0015 24.9 3.8 24 391-414 38-62 (80)
30 KOG2391|consensus 31.4 1.4E+02 0.003 31.0 6.6 77 350-429 215-292 (365)
31 KOG0871|consensus 30.2 4.3E+02 0.0094 24.2 9.9 94 275-379 23-128 (156)
32 COG2433 Uncharacterized conser 30.1 3E+02 0.0066 30.8 9.3 30 392-424 482-511 (652)
33 PF06894 Phage_lambd_GpG: Bact 29.8 1.2E+02 0.0025 27.1 5.1 42 387-429 76-117 (127)
34 TIGR03358 VI_chp_5 type VI sec 29.3 1.5E+02 0.0032 27.4 6.0 48 363-418 110-157 (159)
35 PF00619 CARD: Caspase recruit 29.0 2.2E+02 0.0048 22.3 6.4 44 300-343 15-58 (85)
36 TIGR00634 recN DNA repair prot 28.8 8.1E+02 0.018 26.9 14.6 15 407-421 378-392 (563)
37 PF10163 EnY2: Transcription f 28.7 1.1E+02 0.0023 25.1 4.5 25 395-419 22-46 (86)
38 PF05511 ATP-synt_F6: Mitochon 28.6 57 0.0012 27.8 2.9 33 391-423 43-80 (99)
39 PF00521 DNA_topoisoIV: DNA gy 28.0 3.4E+02 0.0074 28.8 9.3 25 97-121 146-171 (426)
40 PF12711 Kinesin-relat_1: Kine 27.8 2.3E+02 0.0049 23.6 6.2 39 339-380 27-65 (86)
41 PF05794 Tcp11: T-complex prot 27.6 7.3E+02 0.016 26.0 12.0 83 262-350 53-162 (441)
42 PF07106 TBPIP: Tat binding pr 27.2 2.8E+02 0.0062 25.2 7.6 31 392-422 124-159 (169)
43 KOG4709|consensus 25.1 3.4E+02 0.0073 26.1 7.5 65 320-384 22-94 (217)
44 PF08703 PLC-beta_C: PLC-beta 24.4 3.7E+02 0.008 25.5 7.8 90 337-428 94-184 (185)
45 PF04065 Not3: Not1 N-terminal 24.2 3E+02 0.0065 27.0 7.4 80 352-440 41-130 (233)
46 PRK10869 recombination and rep 24.0 9.9E+02 0.021 26.3 12.9 15 407-421 373-387 (553)
47 TIGR01069 mutS2 MutS2 family p 23.9 9.6E+02 0.021 27.7 12.5 116 305-422 483-610 (771)
48 TIGR03044 PS_II_psb27 photosys 23.7 2.8E+02 0.0061 25.0 6.4 20 403-422 111-130 (135)
49 PF05278 PEARLI-4: Arabidopsis 23.4 7.7E+02 0.017 24.8 12.1 128 260-401 95-231 (269)
50 TIGR01061 parC_Gpos DNA topois 23.2 8.4E+02 0.018 28.0 11.8 20 365-384 454-473 (738)
51 COG4942 Membrane-bound metallo 23.2 9.4E+02 0.02 25.8 11.3 108 305-423 18-127 (420)
52 COG4550 Predicted membrane pro 23.1 5.2E+02 0.011 22.7 8.6 57 356-412 28-92 (120)
53 PF08581 Tup_N: Tup N-terminal 22.7 2E+02 0.0043 23.5 4.9 17 333-349 1-17 (79)
54 TIGR01062 parC_Gneg DNA topois 22.3 6.7E+02 0.014 28.9 10.7 85 286-383 383-469 (735)
55 cd02434 Nodulin-21_like_3 Nodu 22.3 2.4E+02 0.0052 27.3 6.4 31 390-420 80-110 (225)
56 PLN03229 acetyl-coenzyme A car 22.3 5.6E+02 0.012 29.5 9.8 33 391-423 558-590 (762)
57 PF14357 DUF4404: Domain of un 22.3 3.1E+02 0.0068 22.4 6.1 68 371-441 2-81 (85)
58 PHA02562 46 endonuclease subun 22.1 8.3E+02 0.018 26.3 11.2 11 108-118 42-52 (562)
59 smart00076 IFabd Interferon al 21.9 3.3E+02 0.0071 23.8 6.5 29 391-419 83-115 (117)
60 smart00787 Spc7 Spc7 kinetocho 21.7 6.7E+02 0.014 25.6 9.7 69 328-402 143-215 (312)
61 PF09432 THP2: Tho complex sub 21.6 3.1E+02 0.0067 24.5 6.2 17 367-383 79-95 (132)
62 PF05529 Bap31: B-cell recepto 21.4 3.5E+02 0.0076 25.1 7.1 13 390-402 160-172 (192)
63 PF12128 DUF3584: Protein of u 20.9 5.6E+02 0.012 31.1 10.3 72 370-441 729-805 (1201)
64 PF09004 DUF1891: Domain of un 20.6 33 0.00072 24.7 0.0 14 364-377 12-25 (42)
65 COG2916 Hns DNA-binding protei 20.5 4.4E+02 0.0095 23.6 7.0 47 329-375 12-59 (128)
66 PF13228 DUF4037: Domain of un 20.5 1.4E+02 0.0029 25.3 3.7 39 390-434 22-61 (100)
67 KOG0681|consensus 20.2 1.4E+02 0.0031 32.9 4.5 36 390-425 345-380 (645)
68 cd02433 Nodulin-21_like_2 Nodu 20.2 2.8E+02 0.0061 27.1 6.3 31 390-420 97-127 (234)
No 1
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-61 Score=512.59 Aligned_cols=289 Identities=30% Similarity=0.473 Sum_probs=265.5
Q ss_pred ceeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEe-cc--CcCCCccccccccceEEEEEEeecCCc-e
Q psy17017 83 HLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDH-KV--SLVKDLSEVYSVGSFVHIREVLTLPDR-L 158 (442)
Q Consensus 83 ~lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl-~~--~~v~~~~dly~vGTla~I~~~~~l~d~-~ 158 (442)
.||+||||++|+||+|+.||+|+|++++++|+.+++.++.++++++ ++ ...++.+|+|+|||+|+|.++.++||| +
T Consensus 9 ~lpvlplr~~vvfP~m~~pl~vgr~~si~ale~a~~~~~k~i~l~~qk~~~~d~p~~~dly~vGt~a~I~q~~~lpdg~~ 88 (782)
T COG0466 9 ELPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKNDQKYILLVTQKDASTDEPTEDDLYEVGTLAKILQILKLPDGTV 88 (782)
T ss_pred cceeEEecCceeCCCceeeEEcCChhHHHHHHHHHhCCCCEEEEEEecccccCCCChhhhhhcchheeeeeeeeCCCCcE
Confidence 5999999999999999999999999999999999998778888887 42 234678999999999999999999997 9
Q ss_pred EEEEEeeeEEEEeeeeccCCCCccccccCCCCCCCCccchhhhccCCCccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q psy17017 159 RLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPGP 238 (442)
Q Consensus 159 rvlV~G~~RvrI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (442)
+|+|+|+.|++|.++....
T Consensus 89 kvlveg~~R~~I~~~~~~~------------------------------------------------------------- 107 (782)
T COG0466 89 KVLVEGLQRVRISKLSDEE------------------------------------------------------------- 107 (782)
T ss_pred EEEEEeeeeEEEEeeccCC-------------------------------------------------------------
Confidence 9999999999999998763
Q ss_pred CCCCCceEEEEEeecCCCcCCcHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHhccCCCCCCChHHHHHHHHHhcCCCH
Q psy17017 239 DEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEG 318 (442)
Q Consensus 239 ~~~~p~l~a~Ve~l~~~~~~~~~e~kAL~~eIi~~~~~~i~l~~~~~e~~~~~l~~~g~~~~ddp~~LaD~vAa~l~~~~ 318 (442)
+++.|+++.+++.+.+.+.+++|+++.++..|++|+.+++.++.+..+.+.. +++|.+|||++|++++++.
T Consensus 108 ----~~~~a~~~~i~~~~~~~~~~~~al~~~i~~~~~~~~~l~~~~~~e~l~~~~~-----i~~~~klad~iaa~l~~~~ 178 (782)
T COG0466 108 ----EFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYAKLNKKIPPEELQSLNS-----IDDPGKLADTIAAHLPLKL 178 (782)
T ss_pred ----CceEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHhc-----ccchHHHHHHHHHhCCCCH
Confidence 6889999999876655567899999999999999999999665444444445 9999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCCChhHHHHHHHH
Q psy17017 319 TEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRE 398 (442)
Q Consensus 319 ~ekQ~lLe~~di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~e~dd~~~ei~elre 398 (442)
+++|++||+.|+.+||++++.+|.+|+++.++|++|+.+|+++|+|+|||||||||||+||+|||++ ++..+++++|++
T Consensus 179 ~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~-~d~~~e~~~~~~ 257 (782)
T COG0466 179 EEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGED-DDDKDEVEELRE 257 (782)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999954 344589999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhC
Q psy17017 399 RIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTK 442 (442)
Q Consensus 399 kl~~~~lpeev~k~~~kEL~RL~~m~~~S~E~~ViRnYLD~l~~ 442 (442)
||+++.||++|++++++||+||++|+|+||||+|+|||||||++
T Consensus 258 kie~~~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwll~ 301 (782)
T COG0466 258 KIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWLLD 301 (782)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999985
No 2
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=100.00 E-value=1.6e-58 Score=511.36 Aligned_cols=287 Identities=24% Similarity=0.419 Sum_probs=261.8
Q ss_pred ceeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEe-ccCc--CCCccccccccceEEEEEEeecCCc-e
Q psy17017 83 HLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDH-KVSL--VKDLSEVYSVGSFVHIREVLTLPDR-L 158 (442)
Q Consensus 83 ~lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl-~~~~--v~~~~dly~vGTla~I~~~~~l~d~-~ 158 (442)
.+|+|||+++|+|||+++||+|+++++++||+.+++.+ ..||+++ +++. .+..+++|+|||+|+|.++.++||| +
T Consensus 10 ~LPLfPLr~~VLFPg~~lPL~Ife~R~i~~Ve~al~~~-~~~gvv~~k~~~~~~p~~~dLy~VGtla~I~~~~~l~DG~~ 88 (784)
T PRK10787 10 EIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD-KKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTV 88 (784)
T ss_pred eEEEEECCCceeCCCceeeeecCCHHHHHHHHHHHhcC-CEEEEEEecCCCCCCCCcccccCccEEEEEEEeeECCCCeE
Confidence 49999999999999999999999999999999999875 4677777 3322 2456899999999999999999998 9
Q ss_pred EEEEEeeeEEEEeeeeccCCCCccccccCCCCCCCCccchhhhccCCCccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q psy17017 159 RLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPGP 238 (442)
Q Consensus 159 rvlV~G~~RvrI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (442)
+|+|+|++||+|.++.+.
T Consensus 89 ~Ilv~Gl~RfrI~~~~~~-------------------------------------------------------------- 106 (784)
T PRK10787 89 KVLVEGLQRARISALSDN-------------------------------------------------------------- 106 (784)
T ss_pred EEEEEEEEEEEEEEEEcC--------------------------------------------------------------
Confidence 999999999999998554
Q ss_pred CCCCCceEEEEEeecCCCcCCcHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHhccCCCCCCChHHHHHHHHHhcCCCH
Q psy17017 239 DEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEG 318 (442)
Q Consensus 239 ~~~~p~l~a~Ve~l~~~~~~~~~e~kAL~~eIi~~~~~~i~l~~~~~e~~~~~l~~~g~~~~ddp~~LaD~vAa~l~~~~ 318 (442)
.||+.|+|++++++. ..+.+.+++.+++++.|++++.+++.++.++...+.+ ++||.+|+|++|++++++.
T Consensus 107 ---~py~~A~Ve~l~~~~-~~~~e~~al~~~ll~~~~~~~~l~~~~~~e~~~~~~~-----~ddp~~Lad~iA~~Lpl~~ 177 (784)
T PRK10787 107 ---GEHFSAKAEYLESPT-IDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNS-----IDDPARLADTIAAHMPLKL 177 (784)
T ss_pred ---CCCEEEEEEEecCCC-CCchHHHHHHHHHHHHHHHHHHhcccCCHHHHhhhhc-----cccHHHHHHHHHHHCCCCH
Confidence 399999999998643 2345678999999999999999998887776665655 8999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCCChhHHHHHHHH
Q psy17017 319 TEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRE 398 (442)
Q Consensus 319 ~ekQ~lLe~~di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~e~dd~~~ei~elre 398 (442)
++||+|||+.|+.+||++++.+|++|+++.+++++|+++|+++|+|+|||||||||||+||+|||+ +++.++++++|++
T Consensus 178 ~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~elg~-~~~~~~~~~~~~~ 256 (784)
T PRK10787 178 ADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGE-MDDAPDENEALKR 256 (784)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccccC-CCcchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999994 5566789999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhC
Q psy17017 399 RIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTK 442 (442)
Q Consensus 399 kl~~~~lpeev~k~~~kEL~RL~~m~~~S~E~~ViRnYLD~l~~ 442 (442)
||++++||++|++++.+||+||++|+++||||+|+|||||||++
T Consensus 257 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~ 300 (784)
T PRK10787 257 KIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQ 300 (784)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999985
No 3
>KOG2004|consensus
Probab=100.00 E-value=5.8e-57 Score=475.82 Aligned_cols=327 Identities=52% Similarity=0.755 Sum_probs=277.7
Q ss_pred ccccCCCCCCCceeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEe-ccCc-----CCCccccccccce
Q psy17017 72 IAAVAVPPVWPHLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDH-KVSL-----VKDLSEVYSVGSF 145 (442)
Q Consensus 72 ~~~~~vp~~~p~lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl-~~~~-----v~~~~dly~vGTl 145 (442)
++++.+|+.+|+||+||++..||||||+++|.|.+++++++|++.+...+||+|+|+ +++. +.+.+++|
T Consensus 57 ~s~~~~~~~~~~l~~Lpi~~~pL~PGf~~~i~v~~~~~~~~i~~~l~~~qpyiG~fl~kdd~~~~~~~t~~~~vy----- 131 (906)
T KOG2004|consen 57 MSPVSVPDVPPRLPALPITRGPLFPGFYKRIEVKSPKVLALIREKLRRQQPYIGAFLLKDDSSGDSVITSINEVY----- 131 (906)
T ss_pred CCCCCCcccCcccceeeccCCCcCCCceeEEEecCHHHHHHHHHHHHhcCcccceeeeccCCCCCcceeeccccc-----
Confidence 788889999999999999999999999999999999999999999999999999999 3322 23566777
Q ss_pred EEEEEEeecCCceEEEEEeeeEEEEeeeeccCCCCccccccCCCCCCCCccchhhhccCCCccccccccccCCCCCCCCC
Q psy17017 146 VHIREVLTLPDRLRLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPT 225 (442)
Q Consensus 146 a~I~~~~~l~d~~rvlV~G~~RvrI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (442)
|.++.+..+..+.++.+|||+++....+... |+.+. ....... .. +.+.-....
T Consensus 132 --i~~~~~~~~~~~~~l~~hRr~~~~~~~~~~~-----------g~~~~--~~~~~~~---~~--------~~~r~~i~e 185 (906)
T KOG2004|consen 132 --ILEVFPGKDKLRMVLYPHRRIRITELAPISE-----------GKEDA--EVEYSLL---VT--------GLSRLNITE 185 (906)
T ss_pred --eeeeecCCcchhhhhhhhhheeeeeeccccc-----------ccccc--ccceeec---cc--------ccccccchh
Confidence 7888877778999999999999997766531 12210 0000000 00 000000000
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEeecCCCcCCcHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHhccCCCCCCChHH
Q psy17017 226 ESEEAPPVPGPGPDEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIY 305 (442)
Q Consensus 226 ~~~~~~~~~~~~~~~~~p~l~a~Ve~l~~~~~~~~~e~kAL~~eIi~~~~~~i~l~~~~~e~~~~~l~~~g~~~~ddp~~ 305 (442)
..++ ....+++++|+++.+++++.+.+++|++.++++++++++++|+++++++..+... .+.++|.+
T Consensus 186 ~~~e----------~~~~vl~v~v~~v~~e~~~~~~~~ka~~~ei~~t~rdii~~n~l~r~~v~~~~~~---~~~~~~~~ 252 (906)
T KOG2004|consen 186 MKEE----------KEAEVLSVEVENVKDEPFKKDEEIKALTSEILKTLRDIIAVNSLFREQVATLSQL---IVEDNPIK 252 (906)
T ss_pred hhcc----------ccCCceeeeeecccCCccCcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hcccChhH
Confidence 0000 0026789999999999999888899999999999999999999999998776654 35899999
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCC
Q psy17017 306 LADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLE 385 (442)
Q Consensus 306 LaD~vAa~l~~~~~ekQ~lLe~~di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~e 385 (442)
|||++|+.+.++.+++|++|++.|+++||++++.+|+||++.++||++|.+.|++++.+.||+|+||||||+||+|||.|
T Consensus 253 LaD~~aai~~~~~~elq~vL~~~di~~Rl~~al~llkke~e~~klq~ki~k~vE~k~~~~~r~ylL~eQlk~IKkeLg~e 332 (906)
T KOG2004|consen 253 LADFGAAISGAEFHELQEVLEETDIEKRLEKALELLKKELELAKLQQKIGKEVEEKIKQDHREYLLREQLKAIKKELGIE 332 (906)
T ss_pred HHHHHHHHhccCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhC
Q psy17017 386 KDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTK 442 (442)
Q Consensus 386 ~dd~~~ei~elrekl~~~~lpeev~k~~~kEL~RL~~m~~~S~E~~ViRnYLD~l~~ 442 (442)
+|+++...++|++|++...||++|.+++++||.||+.|+++||||+|+|||||||++
T Consensus 333 ~Ddkd~~~~~~~er~~~~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~ 389 (906)
T KOG2004|consen 333 KDDKDALVEKFRERIKSLKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTS 389 (906)
T ss_pred ccchhhHHHHHHHHhhhccCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHh
Confidence 888888999999999999999999999999999999999999999999999999985
No 4
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=100.00 E-value=1.2e-55 Score=490.56 Aligned_cols=287 Identities=45% Similarity=0.662 Sum_probs=258.7
Q ss_pred eEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEe-ccCcC--CCccccccccceEEEEEEeecCC---c-
Q psy17017 85 PLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDH-KVSLV--KDLSEVYSVGSFVHIREVLTLPD---R- 157 (442)
Q Consensus 85 PlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl-~~~~v--~~~~dly~vGTla~I~~~~~l~d---~- 157 (442)
|+||||++|||||+++||+|++++|++||++++..++.++++++ ++... +..+++|+|||+|+|.++.++|| |
T Consensus 1 Pl~PLr~~VLfPg~~lpL~Ife~r~i~mV~~al~~~~~~~~vv~~k~~~~~~p~~~~ly~VGt~a~I~~~~~~~d~~dG~ 80 (775)
T TIGR00763 1 PLLPLRRRPLFPGMIKPIDVGREKSIKLIKEALRLKQPYLGLFLQKDDDNEEPEEDDIYSVGVVAQILEMLPLPSSGTAT 80 (775)
T ss_pred CeEcCCCCccCCCcceeEecCCHHHHHHHHHHHhcCCcEEEEEEecCcccCCCCcccccCCceEEEEEEeccCCCCCCCe
Confidence 89999999999999999999999999999999998777765776 33322 46789999999999999999554 7
Q ss_pred eEEEEEeeeEEEEeeeeccCCCCccccccCCCCCCCCccchhhhccCCCccccccccccCCCCCCCCCCCCCCCCCCCCC
Q psy17017 158 LRLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPG 237 (442)
Q Consensus 158 ~rvlV~G~~RvrI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (442)
++|+|+|++||+|.++.+.
T Consensus 81 ~~Ilv~G~~R~rI~~~~~~------------------------------------------------------------- 99 (775)
T TIGR00763 81 YKVVVEGLRRIRIKELSDK------------------------------------------------------------- 99 (775)
T ss_pred EEEEEEEEEEEEEEEEecC-------------------------------------------------------------
Confidence 9999999999999998765
Q ss_pred CCCCCCceEEEEEeecCCCc-CCcHHHHHHHHHHHHHHHHHHHhCcc--cHHHHHHHHhccCCCCCCChHHHHHHHHHhc
Q psy17017 238 PDEPKPVTMVEVVNLKHEKF-KQSEEFKALMQEVIKTVRDIISMNPL--YKEQLMILLQQENSPVVDNPIYLADLGAALT 314 (442)
Q Consensus 238 ~~~~~p~l~a~Ve~l~~~~~-~~~~e~kAL~~eIi~~~~~~i~l~~~--~~e~~~~~l~~~g~~~~ddp~~LaD~vAa~l 314 (442)
.||+.|+|+++++++. ....+++++.+++++.+++|+.+++. ...+....+.+ ++||.+|||++|+++
T Consensus 100 ----~p~~~A~V~~l~~~~~~~~~~e~~al~~~l~~~~~el~~l~~l~~~~~e~~~~~~~-----~~dp~~Lad~ia~~L 170 (775)
T TIGR00763 100 ----GGYLVVRVDNLKEEPFDKDDEEIKALTREIKETFRELISLSKLFREQPALLSALED-----IDEPGRLADFVAASL 170 (775)
T ss_pred ----CCcEEEEEEEecCcCCCCCcHHHHHHHHHHHHHHHHHHHhCccccCCHHHHHHHhc-----cCCHHHHHHHHHHhc
Confidence 3999999999987543 24567899999999999999999984 34444444554 899999999999999
Q ss_pred CCC-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCCChhHHH
Q psy17017 315 GAE-GTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIE 393 (442)
Q Consensus 315 ~~~-~~ekQ~lLe~~di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~e~dd~~~ei 393 (442)
+++ .++||+|||+.|+.+||++++.+|++|+++.+++++|+++|+++|+|+|||||||||||+||+|||+ +++.++++
T Consensus 171 ~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~-~~~~~~~~ 249 (775)
T TIGR00763 171 QLKEKDELQEVLETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGI-EKDDKDEL 249 (775)
T ss_pred CCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCchhHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999994 45667789
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhC
Q psy17017 394 EKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTK 442 (442)
Q Consensus 394 ~elrekl~~~~lpeev~k~~~kEL~RL~~m~~~S~E~~ViRnYLD~l~~ 442 (442)
++|++||++++||+++++++.|||+||++|+++|+||+|+||||||+++
T Consensus 250 ~~~~~k~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ 298 (775)
T TIGR00763 250 EKLKEKLEELKLPEEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTD 298 (775)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999975
No 5
>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.
Probab=99.96 E-value=9.9e-28 Score=223.65 Aligned_cols=193 Identities=32% Similarity=0.473 Sum_probs=143.1
Q ss_pred ceeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEec-c-----CcCCCccccccccceEEEEEEeecCC
Q psy17017 83 HLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDHK-V-----SLVKDLSEVYSVGSFVHIREVLTLPD 156 (442)
Q Consensus 83 ~lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl~-~-----~~v~~~~dly~vGTla~I~~~~~l~d 156 (442)
+||+||+++.|+|||++.||+|+++++++|+++++..++++||+|+. . +. ++.+++|++||+|+|.++..++|
T Consensus 1 ~lPv~pl~~~vlfPg~~~~i~i~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~G~~~~I~~~~~~~d 79 (205)
T PF02190_consen 1 ELPVFPLRNQVLFPGQTLPIHIFEPRYIALLKRALDNNNPYFGIFLVKSNKDDSDE-PSIDDLYSVGTLARIIRVEELPD 79 (205)
T ss_dssp EEEEEEESSS---TTBEEEEEE-SHHHHHHHHHHHTTTSE-EEEEEE-EBSSTSSS-S-GGGB-SEEEEEEEEEEEESTT
T ss_pred CEEEEEeCCcccCCCeeEEEEECCHHHHHHHHHHHhcCCCceeEEeecccCCcccC-CcccccccceEEEEEEEEEecCC
Confidence 48999999999999999999999999999999999887667888874 1 22 57889999999999999999998
Q ss_pred c-eEEEEEeeeEEEEeeeeccCCCCccccccCCCCCCCCccchhhhccCCCccccccccccCCCCCCCCCCCCCCCCCCC
Q psy17017 157 R-LRLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPG 235 (442)
Q Consensus 157 ~-~rvlV~G~~RvrI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (442)
| +.++++|++||||.++.....
T Consensus 80 g~~~v~~~g~~R~ki~~~~~~~~--------------------------------------------------------- 102 (205)
T PF02190_consen 80 GTYKVLVQGLQRFKILKINNETQ--------------------------------------------------------- 102 (205)
T ss_dssp S-EEEEEEEEEEEEEEEEEE--E---------------------------------------------------------
T ss_pred CCEEEEEEEEEEEEEEEEecccc---------------------------------------------------------
Confidence 7 999999999999999954210
Q ss_pred CCCCCCCCceEEEEEeecC-CCcC---CcHHHHHHHHHHHHHHHHHHHhCccc-HHHHHHHHhccCCCCCCChHHHHHHH
Q psy17017 236 PGPDEPKPVTMVEVVNLKH-EKFK---QSEEFKALMQEVIKTVRDIISMNPLY-KEQLMILLQQENSPVVDNPIYLADLG 310 (442)
Q Consensus 236 ~~~~~~~p~l~a~Ve~l~~-~~~~---~~~e~kAL~~eIi~~~~~~i~l~~~~-~e~~~~~l~~~g~~~~ddp~~LaD~v 310 (442)
.+||+.|+|+.+++ .+.. ...+++++..++++.++++......+ +......+.. .++|..|+|++
T Consensus 103 -----~~~~~~a~v~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~ 172 (205)
T PF02190_consen 103 -----EDPYLVAEVEPLEDVEPPESDELDEEIKALLRELIKKIKEAYENLKELLPWDLLLKINN-----PDNPPELADFV 172 (205)
T ss_dssp -----CSSCEEEEEEEE-----GCGHHHHHHHHHHHHHHHHHHH---HHHCCC-CHHHHHHTTT-----HHHHHHHHHHH
T ss_pred -----cCCceEEEEEEecccCccchhhhHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhc-----cCCHHHHHHHH
Confidence 04899999999965 2222 23578888888888887533333333 3444444544 78899999999
Q ss_pred HHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17017 311 AALTGAEGTEQQAILEEMDIPKRLMLSLSLLKK 343 (442)
Q Consensus 311 Aa~l~~~~~ekQ~lLe~~di~~RL~~~l~lLkk 343 (442)
|++++++.++||++|++.|+.+||++++++|+|
T Consensus 173 ~~~l~~~~~ek~~lL~~~~~~~Rl~~l~~~L~~ 205 (205)
T PF02190_consen 173 ASLLPLSPEEKQELLETDDLKERLKLLIELLKK 205 (205)
T ss_dssp HHHS---HHHHHHHHC--SHHHHHHHHHHHHH-
T ss_pred HHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999986
No 6
>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]
Probab=99.84 E-value=9.6e-20 Score=171.97 Aligned_cols=191 Identities=20% Similarity=0.233 Sum_probs=149.7
Q ss_pred ceeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEe-cc-C-c-CCCccccccccceEEEEEEeecCCc-
Q psy17017 83 HLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDH-KV-S-L-VKDLSEVYSVGSFVHIREVLTLPDR- 157 (442)
Q Consensus 83 ~lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl-~~-~-~-v~~~~dly~vGTla~I~~~~~l~d~- 157 (442)
.||+|||++.|+|||.-.|++||+++|..|++.+++.+ +.||+++ +. . . .++...+..|||+++|+++..++||
T Consensus 11 ~LplFPL~~~vLlPg~~LpL~IFEpRY~~Mv~~~~~~~-r~fGvv~i~~~~~~~~~~~~~ls~VGcla~I~~~~~~~DGr 89 (221)
T COG2802 11 ELPLFPLPGAVLLPGGLLPLNIFEPRYLAMVRTCLAEG-RRFGVVLIDRGREVGGGLPPELSDVGCLARITEFEELGDGR 89 (221)
T ss_pred eeeccccccccccCCCCCchhhccHHHHHHHHHHHhcC-CceeEEEecccccccCCCcchhhccceeEEEeEeeEcCCCc
Confidence 49999999999999999999999999999999999965 5679999 22 1 2 2356789999999999999999998
Q ss_pred eEEEEEeeeEEEEeeeeccCCCCccccccCCCCCCCCccchhhhccCCCccccccccccCCCCCCCCCCCCCCCCCCCCC
Q psy17017 158 LRLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPG 237 (442)
Q Consensus 158 ~rvlV~G~~RvrI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (442)
+.|.++|.+||||.++....
T Consensus 90 ~~I~~~G~~RFRv~~~~~~~------------------------------------------------------------ 109 (221)
T COG2802 90 YLILVRGGQRFRVLEELADD------------------------------------------------------------ 109 (221)
T ss_pred EEEEEEeEEEEEEEEEeccc------------------------------------------------------------
Confidence 99999999999999998753
Q ss_pred CCCCCCceEEEEEeecCCCcCCc--HHHHHHHH-HHHHHHHHHHHhCcccHHHHHHHHhccCCCCCCChHHHHHHHHHhc
Q psy17017 238 PDEPKPVTMVEVVNLKHEKFKQS--EEFKALMQ-EVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALT 314 (442)
Q Consensus 238 ~~~~~p~l~a~Ve~l~~~~~~~~--~e~kAL~~-eIi~~~~~~i~l~~~~~e~~~~~l~~~g~~~~ddp~~LaD~vAa~l 314 (442)
.||..+.+.+++|++.... .+++.... -+...++.|...+... .+ ... ....++.++++-++.++
T Consensus 110 ----~pyr~~~~~~~~D~~~~~~~a~evdr~~~~~l~~~~r~~~~~~~l~-~d----~~~---~~~~~~~~l~n~L~~ll 177 (221)
T COG2802 110 ----DPYRRARVPFWPDLPSDPDGAEEVDRRLDALLMRAARAYLQRLELL-AD----WES---YERASNADLANRLYMLL 177 (221)
T ss_pred ----CcceeeccccCCCCccCcchHHHHHHHHHHHHHHHHHHHhhhcchh-hh----hcc---cccccHHHHHHHHHHhC
Confidence 3999999988887643322 44443322 2334445555433221 11 111 12678999999999999
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy17017 315 GAEGTEQQAILEEMDIPKRLMLSLSLLKKELE 346 (442)
Q Consensus 315 ~~~~~ekQ~lLe~~di~~RL~~~l~lLkkEle 346 (442)
+.++.+||++|+..|+..|+..++.+++.-..
T Consensus 178 p~~~~~k~~ll~a~d~~~r~~~L~~~~e~l~a 209 (221)
T COG2802 178 PFDPAEKQALLEAPDLPTRAERLIRLLEQLLA 209 (221)
T ss_pred CCChhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988776443
No 7
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=98.87 E-value=1.8e-08 Score=83.70 Aligned_cols=39 Identities=31% Similarity=0.610 Sum_probs=36.3
Q ss_pred eeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCC
Q psy17017 84 LPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQP 122 (442)
Q Consensus 84 lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~ 122 (442)
+|+||+++.|+|||++.||.|++++++++++++++.+++
T Consensus 2 lpviPl~~~vlfP~~~~pl~v~~~~~i~~i~~~~~~~~~ 40 (92)
T smart00464 2 LPLLPIRRRPLFPGFVLPIPVKRPKSVAAIKEALRRSQP 40 (92)
T ss_pred ceEEEcCCCccCCCceEEEEeCCHHHHHHHHHHHhcCCC
Confidence 799999999999999999999999999999998886654
No 8
>KOG4159|consensus
Probab=98.17 E-value=5e-06 Score=86.37 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=77.1
Q ss_pred CCceeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEeccCcCCCccccccccceEEEEEEeecCCc-eE
Q psy17017 81 WPHLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDHKVSLVKDLSEVYSVGSFVHIREVLTLPDR-LR 159 (442)
Q Consensus 81 ~p~lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl~~~~v~~~~dly~vGTla~I~~~~~l~d~-~r 159 (442)
...+|+|++ .+..||+.+.|++|+++++--++++++..+...+|+.+.+..- +-...+.+|++..|..+..++|| .-
T Consensus 174 e~~~p~f~v-~~~~~p~v~cpl~vfe~~y~lm~~r~~~~~~~rf~i~~sd~~~-~~~~~~e~g~i~ei~~v~~l~dgrsv 251 (398)
T KOG4159|consen 174 ECESPLFPV-CTLAFPEVPCPLQVFEPRYRLMIRRLLETGDKRFGICLSDSSK-GSGQAAEIGCILEIRKVESLGDGRSV 251 (398)
T ss_pred cccCCcccc-cccccccccCcHHHccchHHHHHHHHHhhcceeeeeecccccC-Ccchhhhccchhhhcccccccccchh
Confidence 346899996 8999999999999999999999999998877677888833221 11146899999999999999998 55
Q ss_pred EEEEeeeEEEEeeeecc
Q psy17017 160 LVLLAHRRIKIVAPYED 176 (442)
Q Consensus 160 vlV~G~~RvrI~~~~~~ 176 (442)
+...|-.|+|+......
T Consensus 252 ~~~~gk~r~r~~~~~~~ 268 (398)
T KOG4159|consen 252 VDSIGKSRFRVLLFSQT 268 (398)
T ss_pred hhhhcCcceeeeeecCC
Confidence 66789999998777665
No 9
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.93 E-value=3.8e-05 Score=87.58 Aligned_cols=102 Identities=23% Similarity=0.208 Sum_probs=88.3
Q ss_pred CCCCCCChHHHHHHHHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhHHH
Q psy17017 296 NSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIG-----REVEEKVKQQHRKYI 370 (442)
Q Consensus 296 g~~~~ddp~~LaD~vAa~l~~~~~ekQ~lLe~~di~~RL~~~l~lLkkEle~~klq~~I~-----~~V~~k~~k~QRey~ 370 (442)
+++..+....|+|.+|+.+.++...+|+.| +|++..+..|+.|++..+.++++. +++++++++.|++|+
T Consensus 383 ~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L------~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~ 456 (857)
T PRK10865 383 DRQLPDKAIDLIDEAASSIRMQIDSKPEEL------DRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYS 456 (857)
T ss_pred CCCCChHHHHHHHHHhcccccccccChHHH------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356688899999999999999999999988 899999999999999999888777 688899999999999
Q ss_pred -HHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCC
Q psy17017 371 -LQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKK 404 (442)
Q Consensus 371 -LrEQLK~IkkELG~e~dd~~~ei~elrekl~~~~ 404 (442)
|++|++++++++|. .++..+++++++++++++.
T Consensus 457 ~L~eq~k~~k~el~~-~~~~~~ele~l~~kie~a~ 490 (857)
T PRK10865 457 ELEEEWKAEKASLSG-TQTIKAELEQAKIAIEQAR 490 (857)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999993 4455567778887777653
No 10
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.82 E-value=0.00028 Score=72.68 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhh
Q psy17017 369 YILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLT 441 (442)
Q Consensus 369 y~LrEQLK~IkkELG~e~dd~~~ei~elrekl~~~~lpeev~k~~~kEL~RL~~m~~~S~E~~ViRnYLD~l~ 441 (442)
-.|++|+|+|++|++ +...++++++++|+..+.|+.+...+.++++++..+-++|++++++++|++|+.
T Consensus 9 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (364)
T TIGR01242 9 RKLEDEKRSLEKEKI----RLERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFID 77 (364)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCC
Confidence 357899999999987 456789999999999999999999999999999999999999999999999973
No 11
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=82.77 E-value=5.6 Score=44.29 Aligned_cols=60 Identities=23% Similarity=0.430 Sum_probs=49.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCC
Q psy17017 326 EEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLE 385 (442)
Q Consensus 326 e~~di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~e 385 (442)
.+.++++-|..+-+.+...+..--++.+|.++|+++|.+.|.||+=.=.+.+|+++-|-|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (615)
T TIGR02903 62 DPRELPEILEDTEDHIADILARRTVENRIERKVETRMQERQNKYLEEIRLQVLKEEKGPE 121 (615)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 344566667777788888888889999999999999999999998766778888887743
No 12
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=66.84 E-value=14 Score=35.21 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy17017 364 QQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAK 419 (442)
Q Consensus 364 k~QRey~LrEQLK~IkkELG~e~dd~~~ei~elrekl~~~~lpeev~k~~~kEL~R 419 (442)
+.||+++.+|.-+ .+.|+-. +.+.+.+++.+.+++++++++..+.+-+++.|
T Consensus 57 ~se~~~~~~e~~r-e~~e~~~---~pe~e~~el~~iy~~~Gl~~~~a~~i~~~l~~ 108 (213)
T PF01988_consen 57 KSERDLYEAERER-EEWELEN---NPEEEKEELVEIYRAKGLSEEDAEEIAEELSK 108 (213)
T ss_pred HhhhhHHHHHhHH-HHHHHHh---ChHhHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 4556666665544 4566652 44567889999999999999999999999887
No 13
>KOG1400|consensus
Probab=66.59 E-value=4.8 Score=41.32 Aligned_cols=48 Identities=21% Similarity=0.034 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy17017 300 VDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELEL 347 (442)
Q Consensus 300 ~ddp~~LaD~vAa~l~~~~~ekQ~lLe~~di~~RL~~~l~lLkkEle~ 347 (442)
...|..|+..+|..++....-++.+|.+-.+..||.+-+..++++--.
T Consensus 273 ~~kpivlSf~~a~kihv~e~~~~hL~~~g~v~tRlq~e~~~~~k~ti~ 320 (371)
T KOG1400|consen 273 PGKPIVLSFKYAWKIHVCERCREHLLWEGSVMTRLQREFFGIQKETIT 320 (371)
T ss_pred CCCceEeehhhhhhhhhhHHHHHHHHhhcccccchheeeecccchhhh
Confidence 678999999999999999999999999999999999999999887544
No 14
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=57.46 E-value=34 Score=32.88 Aligned_cols=49 Identities=41% Similarity=0.463 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17017 329 DIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKEL 382 (442)
Q Consensus 329 di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkEL 382 (442)
++.+|..+.-.+-+-+-++.+|+.++.++ .+.-|+.=|+-+||.+++||
T Consensus 173 ~~~~~~~~~~~i~~L~kei~~L~~~~~kE-----kq~nrkveln~elk~l~~eL 221 (221)
T PF14335_consen 173 SLWERIERLEQIEKLEKEIAKLKKKIKKE-----KQFNRKVELNTELKKLKKEL 221 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHhcC
Confidence 88888888888888888888888887754 34445566888999999986
No 15
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=55.77 E-value=1.9e+02 Score=32.89 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=57.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhhHH-HHHHHHHHHHhhcCCCC---------C
Q psy17017 323 AILEEMDIPKRLMLSLSLLKKELELNKLQQK-----IGREVEEKVKQQHRKY-ILQEQLKAIKKELGLEK---------D 387 (442)
Q Consensus 323 ~lLe~~di~~RL~~~l~lLkkEle~~klq~~-----I~~~V~~k~~k~QRey-~LrEQLK~IkkELG~e~---------d 387 (442)
.+|+...=..=|+..|++|=..|+..+-..+ ....++.+-..-.++| +|..+++.+|+|||++. .
T Consensus 200 ~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~ 279 (683)
T PF08580_consen 200 SLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGR 279 (683)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4444333333356677777777766554332 1244444444444454 89999999999999421 0
Q ss_pred Ch---hHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHcC
Q psy17017 388 DK---DAIEEKFRERIKDK---KVPPPVMEVLNEELAKLGF 422 (442)
Q Consensus 388 d~---~~ei~elrekl~~~---~lpeev~k~~~kEL~RL~~ 422 (442)
.- -+.+++.-.|+.+. ++..+....+.++|.-++.
T Consensus 280 q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~ 320 (683)
T PF08580_consen 280 QAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEK 320 (683)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHH
Confidence 11 12344444555555 5666666777777766654
No 16
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=54.21 E-value=0.33 Score=50.75 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHh
Q psy17017 372 QEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWL 440 (442)
Q Consensus 372 rEQLK~IkkELG~e~dd~~~ei~elrekl~~~~lpeev~k~~~kEL~RL~~m~~~S~E~~ViRnYLD~l 440 (442)
.+|++.+.++|+.+.+....+++++++.++...-|+.+...+.++++.-+-+-..++.++++.+|..|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~g~~~~~~~~~~~ 85 (389)
T PRK03992 17 IRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDGRVVVKSSGGPQFLVNVSPFI 85 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCCeEEEEECCCCEEEEeccccC
Confidence 367777777777443455677888999999888888888877777777655555666665566655554
No 17
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=52.38 E-value=9.2 Score=32.62 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=16.1
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHH
Q psy17017 373 EQLKAIKKELGLEKDDKDAIEEKFRERIK 401 (442)
Q Consensus 373 EQLK~IkkELG~e~dd~~~ei~elrekl~ 401 (442)
|||+.+++.|-.+......+++++.+.|+
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56777776665221224455666666653
No 18
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=51.67 E-value=97 Score=28.37 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHc
Q psy17017 343 KELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKD 402 (442)
Q Consensus 343 kEle~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~e~dd~~~ei~elrekl~~ 402 (442)
+|-++.+-+.++..+|..++..-+-+- .+|-.|+.||-.-.|+--.+++-+|.||..
T Consensus 39 kEeeIErkKmeVrekVq~~LgrveEet---krLa~ireeLE~l~dP~RkEv~~vRkkID~ 95 (159)
T PF04949_consen 39 KEEEIERKKMEVREKVQAQLGRVEEET---KRLAEIREELEVLADPMRKEVEMVRKKIDS 95 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 566666777788888888877666542 467777777764456777889999999874
No 19
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=49.55 E-value=1.9e+02 Score=26.57 Aligned_cols=72 Identities=31% Similarity=0.412 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc
Q psy17017 343 KELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLG 421 (442)
Q Consensus 343 kEle~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~e~dd~~~ei~elrekl~~~~lpeev~k~~~kEL~RL~ 421 (442)
+..++.+|+..+...|..=-.-..+-.++...+..++.+|. +....+.++++.+...+ .-+.++.+...+|.
T Consensus 61 Rn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~----~~~~~~~~~r~~l~~~k---~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 61 RNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELK----DREEELAKLREELYRVK---KERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34455555555555554433333444556666666666665 23344555555554432 23444555555554
No 20
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.04 E-value=92 Score=27.24 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHhccCCCCCC-ChHHHHHHHHHhcCCCHHHHHHHHhcCCHH---HHHHH
Q psy17017 261 EEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVD-NPIYLADLGAALTGAEGTEQQAILEEMDIP---KRLML 336 (442)
Q Consensus 261 ~e~kAL~~eIi~~~~~~i~l~~~~~e~~~~~l~~~g~~~~d-dp~~LaD~vAa~l~~~~~ekQ~lLe~~di~---~RL~~ 336 (442)
.++.-..++..+-++.+..++|.-..++..-+.+ +. -+..+|.-+|.++|-++.+.-.||+..... +-+..
T Consensus 29 ~eL~y~~~~al~y~~kFakldpe~a~e~veEL~~-----i~~~~e~~avkIadI~P~t~~ElRsIla~e~~~~s~E~l~~ 103 (114)
T COG1460 29 EELTYEQREALEYAEKFAKLDPEKARELVEELLS-----IVKMSEKIAVKIADIMPRTPDELRSILAKERVMLSDEELDK 103 (114)
T ss_pred ccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hccccHHHHHHHHHhCCCCHHHHHHHHHHccCCCCHHHHHH
Confidence 3455556666777778777776554444333333 33 488999999999999999999999988877 88888
Q ss_pred HHHHHHHHH
Q psy17017 337 SLSLLKKEL 345 (442)
Q Consensus 337 ~l~lLkkEl 345 (442)
+++++.|-.
T Consensus 104 Ildiv~Ky~ 112 (114)
T COG1460 104 ILDIVDKYR 112 (114)
T ss_pred HHHHHHHHh
Confidence 888887743
No 21
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=42.34 E-value=85 Score=22.37 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q psy17017 345 LELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELG 383 (442)
Q Consensus 345 le~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG 383 (442)
.++-+++++|-.+|+..+.|.-. |=|.||+.||.
T Consensus 3 ~dle~~KqEIL~EvrkEl~K~K~-----EIIeA~~~eL~ 36 (40)
T PF08776_consen 3 SDLERLKQEILEEVRKELQKVKE-----EIIEAIRQELS 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 35567778888888888877654 44667777664
No 22
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=39.24 E-value=2.5e+02 Score=33.22 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHH
Q psy17017 301 DNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLS--LSLLKKELELNKLQQKIGREVEEKV-KQQHRKYILQEQLKA 377 (442)
Q Consensus 301 ddp~~LaD~vAa~l~~~~~ekQ~lLe~~di~~RL~~~--l~lLkkEle~~klq~~I~~~V~~k~-~k~QRey~LrEQLK~ 377 (442)
++......-+.....++...-++||+. ||+.+ ++..+-+-|..+|+.+|..- ++=+ ++....-++.++|+.
T Consensus 412 ~~~~~a~~~l~~~f~~s~~qa~aIl~m-----rL~~Lt~le~~kl~~E~~eL~~~I~~l-~~iL~~~~~l~~vi~~EL~e 485 (957)
T PRK13979 412 KSKKDASENLIEKFGFTDEQAEAILEL-----MLYRLTGLEIVAFEKEYKELEKLIKKL-TKILSSEKELLKVIKKELKE 485 (957)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHhC-----cHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH
Confidence 333333333334445555555566553 44443 22333344444555555432 2222 455566789999999
Q ss_pred HHhhcCC
Q psy17017 378 IKKELGL 384 (442)
Q Consensus 378 IkkELG~ 384 (442)
|++..|.
T Consensus 486 ik~kygd 492 (957)
T PRK13979 486 VKEKYGD 492 (957)
T ss_pred HHHHhCC
Confidence 9999993
No 23
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=39.12 E-value=3.6e+02 Score=25.97 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=25.2
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHH
Q psy17017 373 EQLKAIKKELGLEKDDKDAIEEKFRERIKDKK-----VPPPVMEVLNEELAK 419 (442)
Q Consensus 373 EQLK~IkkELG~e~dd~~~ei~elrekl~~~~-----lpeev~k~~~kEL~R 419 (442)
|.+|..+++.-.+.---.+++..+.-+|..++ +++++.-..-+|+=|
T Consensus 77 e~lk~l~~~~~~~f~a~~edi~rlE~~i~~lgaRwGilsEdAFR~gv~eil~ 128 (231)
T COG5493 77 EDLKLLQRFQEEEFRATKEDIKRLETIITGLGARWGILSEDAFRQGVREILR 128 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 45666665542111112245666666666543 677777776666644
No 24
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=37.60 E-value=96 Score=30.87 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy17017 391 AIEEKFRERIKDKKVPPPVMEVLNEELAK 419 (442)
Q Consensus 391 ~ei~elrekl~~~~lpeev~k~~~kEL~R 419 (442)
.+.++|+++|.+.++++++.+.+.+++..
T Consensus 134 ~~l~~l~~~L~~~gv~~~la~~L~~~l~~ 162 (282)
T TIGR03499 134 PEGAKLLERLLRAGVSPELARELLEKLPE 162 (282)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHhhc
Confidence 46788999999999999999999999874
No 25
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=37.17 E-value=2.7e+02 Score=24.21 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHc
Q psy17017 368 KYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKD 402 (442)
Q Consensus 368 ey~LrEQLK~IkkELG~e~dd~~~ei~elrekl~~ 402 (442)
+..+.++++.+=..||. ...+++++|+.||..
T Consensus 76 e~~~~~~v~~~L~~lg~---~tk~ev~~L~~RI~~ 107 (118)
T TIGR01837 76 EKAFDERVEQALNRLNI---PSREEIEALSAKIEQ 107 (118)
T ss_pred HHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHH
Confidence 45788899999899995 456689999999873
No 26
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=36.62 E-value=1e+02 Score=28.42 Aligned_cols=44 Identities=30% Similarity=0.443 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy17017 367 RKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELA 418 (442)
Q Consensus 367 Rey~LrEQLK~IkkELG~e~dd~~~ei~elrekl~~~~lpeev~k~~~kEL~ 418 (442)
+=+-||++|+.++.-||. ...|++.|++.--.++.++.+.+|+.
T Consensus 113 ~LlelR~~L~~L~~~l~~--------~~~~r~~l~~~l~~~~~~~~l~~el~ 156 (157)
T PF05591_consen 113 KLLELREQLRDLKGPLDN--------NPAFRKLLQEILSDPEALEKLKSELG 156 (157)
T ss_pred HHHHHHHHHHHHHHHhhc--------hHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 334588999999998883 34688888888888999999988875
No 27
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=34.01 E-value=1e+02 Score=35.33 Aligned_cols=96 Identities=10% Similarity=0.199 Sum_probs=54.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHhhcCCCCCChhHHHHHHH
Q psy17017 323 AILEEMDIPKRLMLSLSLLKKELELNK---LQQKIGREVEE--KVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFR 397 (442)
Q Consensus 323 ~lLe~~di~~RL~~~l~lLkkEle~~k---lq~~I~~~V~~--k~~k~QRey~LrEQLK~IkkELG~e~dd~~~ei~elr 397 (442)
++.+..++-+-+.+++..+..-+++.+ -..+...++.+ ++.+.|-+|+|.=+|..+-++ +-+.-..|.+++.
T Consensus 364 k~~~r~~il~g~~~~~~~id~~i~iir~~~~~~~~~~~l~~~f~~~~~q~~~il~m~l~~lt~~---e~~kl~~e~~~l~ 440 (738)
T TIGR01061 364 KASKRLEIVEGLIKAISIIDEIIKLIRSSEDKSDAKENLIDNFKFTENQAEAIVSLRLYRLTNT---DIFELKEEQNELE 440 (738)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhhHHHHHhHH---HHHHHHHHHHHHH
Confidence 334444444455555555555555522 12234444444 356778999998777776543 1122334555666
Q ss_pred HHHHcC----CCCHHHHHHHHHHHHHHc
Q psy17017 398 ERIKDK----KVPPPVMEVLNEELAKLG 421 (442)
Q Consensus 398 ekl~~~----~lpeev~k~~~kEL~RL~ 421 (442)
+.|+.. +=+....+.+.+||..++
T Consensus 441 ~~i~~l~~iL~~~~~~~~~i~~el~~ik 468 (738)
T TIGR01061 441 KKIISLEQIIASEKARNKLLKKQLEEYK 468 (738)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 666653 235677788888887765
No 28
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.29 E-value=1.4e+02 Score=28.32 Aligned_cols=21 Identities=29% Similarity=0.186 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17017 331 PKRLMLSLSLLKKELELNKLQ 351 (442)
Q Consensus 331 ~~RL~~~l~lLkkEle~~klq 351 (442)
..||..+|.+-........-.
T Consensus 92 ~~RL~kLL~lk~~~~~~~e~~ 112 (190)
T PF05266_consen 92 RSRLNKLLSLKDDQEKLLEER 112 (190)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 455566666655544444433
No 29
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.81 E-value=70 Score=24.91 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHcC-CCCHHHHHHHH
Q psy17017 391 AIEEKFRERIKDK-KVPPPVMEVLN 414 (442)
Q Consensus 391 ~ei~elrekl~~~-~lpeev~k~~~ 414 (442)
.+.+++++.++.. +=|+.+.+.|.
T Consensus 38 ~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 38 KENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3455566666666 43444433333
No 30
>KOG2391|consensus
Probab=31.43 E-value=1.4e+02 Score=30.97 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHcCCCCCCc
Q psy17017 350 LQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEE-LAKLGFLESHSS 428 (442)
Q Consensus 350 lq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~e~dd~~~ei~elrekl~~~~lpeev~k~~~kE-L~RL~~m~~~S~ 428 (442)
...++..+++++|+.+|. +++-||--.+||-+..-.-+.+.+.|+.++...+..-+|.+.=.+| +.+++.+...+.
T Consensus 215 ~~eklR~r~eeeme~~~a---eq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~ 291 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQA---EQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDI 291 (365)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCc
Confidence 334455555555555554 3344444444444210001123344444444455555554443333 444444444433
Q ss_pred h
Q psy17017 429 E 429 (442)
Q Consensus 429 E 429 (442)
+
T Consensus 292 D 292 (365)
T KOG2391|consen 292 D 292 (365)
T ss_pred h
Confidence 3
No 31
>KOG0871|consensus
Probab=30.24 E-value=4.3e+02 Score=24.22 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=53.2
Q ss_pred HHHHHhCcccHHHHHHHHhccCCCCCCChHHHHHHHHHhc----------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17017 275 RDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALT----------GAEGTEQQAILEEMDIPKRLMLSLSLLKKE 344 (442)
Q Consensus 275 ~~~i~l~~~~~e~~~~~l~~~g~~~~ddp~~LaD~vAa~l----------~~~~~ekQ~lLe~~di~~RL~~~l~lLkkE 344 (442)
++++..+-.+..+...++ +..-..+..++++-. .+.++.-++-|+.+...+=+.-+.+.+...
T Consensus 23 ke~lP~d~rvakeareli-------incCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF~eYiee~~~vl~~~ 95 (156)
T KOG0871|consen 23 KEMLPKDVRVAKEARELI-------INCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGFGEYIEEAEEVLENC 95 (156)
T ss_pred HHhCCcccccchHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 344433334444444444 235566666665543 467778888899999988888888777665
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHH
Q psy17017 345 LELNKLQQKIGREVEEKVK--QQHRKYILQEQLKAIK 379 (442)
Q Consensus 345 le~~klq~~I~~~V~~k~~--k~QRey~LrEQLK~Ik 379 (442)
-...+-.. +-..+++ ..=.|-+||+|.+-++
T Consensus 96 K~~~~~~~----~kssk~e~~Gi~eEEL~~qQqeLf~ 128 (156)
T KOG0871|consen 96 KEEAKKRR----RKSSKFEKSGIPEEELLRQQQELFA 128 (156)
T ss_pred HHHHHHhh----hhhhhHHhcCCCHHHHHHHHHHHHH
Confidence 54444222 2222332 2335566666655544
No 32
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=30.12 E-value=3e+02 Score=30.77 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCC
Q psy17017 392 IEEKFRERIKDKKVPPPVMEVLNEELAKLGFLE 424 (442)
Q Consensus 392 ei~elrekl~~~~lpeev~k~~~kEL~RL~~m~ 424 (442)
.++.|+.+|++. ....+.+.++|++|++|.
T Consensus 482 ~I~~L~~~L~e~---~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 482 RIERLEKELEEK---KKRVEELERKLAELRKMR 511 (652)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 455555555543 344556666666666543
No 33
>PF06894 Phage_lambd_GpG: Bacteriophage lambda minor tail protein (GpG); InterPro: IPR010027 This entry is represented by Bacteriophage lambda, GpG, a minor tail protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of bacteriophage proteins including G of phage lambda. This protein has been described as undergoing a translational frameshift at a Gly-Lys dipeptide near the C terminus of protein G from phage lambda, with about 4% efficiency, to produce tail assembly protein G-T.
Probab=29.76 E-value=1.2e+02 Score=27.10 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=35.4
Q ss_pred CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCCCCch
Q psy17017 387 DDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSE 429 (442)
Q Consensus 387 dd~~~ei~elrekl~~~~lpeev~k~~~kEL~RL~~m~~~S~E 429 (442)
++...+++++.+-+. .+||.++...+...+.+|+-|.|..+|
T Consensus 76 ~~~~~~v~~lq~eVm-~tWp~eaI~~a~~~V~~LSGM~~~~~e 117 (127)
T PF06894_consen 76 PDPEEDVEELQQEVM-STWPPEAIGAAEEVVKSLSGMVPPVEE 117 (127)
T ss_pred CchhHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcCCCCCCCC
Confidence 455678889998887 789999999999999999999665544
No 34
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=29.34 E-value=1.5e+02 Score=27.43 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=36.6
Q ss_pred HhhhhHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy17017 363 KQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELA 418 (442)
Q Consensus 363 ~k~QRey~LrEQLK~IkkELG~e~dd~~~ei~elrekl~~~~lpeev~k~~~kEL~ 418 (442)
..-.+=+=||++|+.++.-||. ...|+++|++.-=.++.++.+..|+.
T Consensus 110 p~L~~LlelR~~L~~L~~~l~~--------~~~~~~~l~~~l~d~~~~~~L~~el~ 157 (159)
T TIGR03358 110 PELKKLLEAREALRDLKGPLDN--------NPDLRKLLQELLKDKDLLEKLLSELG 157 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhccC--------cHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 3333445589999999999883 23588888888788899999988875
No 35
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=28.97 E-value=2.2e+02 Score=22.31 Aligned_cols=44 Identities=18% Similarity=0.066 Sum_probs=39.9
Q ss_pred CCChHHHHHHHHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17017 300 VDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKK 343 (442)
Q Consensus 300 ~ddp~~LaD~vAa~l~~~~~ekQ~lLe~~di~~RL~~~l~lLkk 343 (442)
++++..+.|...+.=-++.++...|.......+|...++++|.+
T Consensus 15 l~~~~~ild~L~~~~vlt~~e~e~I~~~~t~~~k~~~LLd~l~~ 58 (85)
T PF00619_consen 15 LDDLDDILDHLLSRGVLTEEEYEEIRSEPTRQDKARKLLDILKR 58 (85)
T ss_dssp SSHHHHHHHHHHHTTSSSHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHCCCCCHHHHHHHHccCChHHHHHHHHHHHHH
Confidence 55788899998888889999999999999999999999999884
No 36
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=28.78 E-value=8.1e+02 Score=26.88 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHc
Q psy17017 407 PPVMEVLNEELAKLG 421 (442)
Q Consensus 407 eev~k~~~kEL~RL~ 421 (442)
+...+.+.++|+.|.
T Consensus 378 ~~l~~~v~~~l~~L~ 392 (563)
T TIGR00634 378 ERLAKRVEQELKALA 392 (563)
T ss_pred HHHHHHHHHHHHhCC
Confidence 455666777777765
No 37
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=28.71 E-value=1.1e+02 Score=25.11 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=11.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH
Q psy17017 395 KFRERIKDKKVPPPVMEVLNEELAK 419 (442)
Q Consensus 395 elrekl~~~~lpeev~k~~~kEL~R 419 (442)
.|++||.+.+|-++|++.+.+.+++
T Consensus 22 ~L~~rL~e~GW~d~vr~~~re~i~~ 46 (86)
T PF10163_consen 22 LLRQRLIECGWRDEVRQLCREIIRE 46 (86)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCChHHHHHHHHHHHHHh
Confidence 3444444444444444444444444
No 38
>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.
Probab=28.63 E-value=57 Score=27.80 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHcCC
Q psy17017 391 AIEEKFRERIKDKK-----VPPPVMEVLNEELAKLGFL 423 (442)
Q Consensus 391 ~ei~elrekl~~~~-----lpeev~k~~~kEL~RL~~m 423 (442)
+-+.||..|-+..+ ..+++.+.+++||.||.++
T Consensus 43 dKIREY~~Ksks~gGklVD~~Pe~~kel~eel~kL~r~ 80 (99)
T PF05511_consen 43 DKIREYNQKSKSSGGKLVDAGPEYEKELNEELEKLARQ 80 (99)
T ss_dssp HHHHHHHHHHTTTSS-STT--THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34667766766543 4899999999999999864
No 39
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=28.04 E-value=3.4e+02 Score=28.76 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=14.5
Q ss_pred CceeEEEeCChh-HHHHHHHHHhcCC
Q psy17017 97 KFIKIVDIFDQP-LIDLIKRKVNLNQ 121 (442)
Q Consensus 97 g~~~~L~I~~~~-~i~ai~~a~~~~~ 121 (442)
|+..-|.-.++. +++++.+.++...
T Consensus 146 G~sT~Ip~hN~~evi~~~~~~l~~~~ 171 (426)
T PF00521_consen 146 GMSTNIPPHNPREVIDAIIRLLDGEE 171 (426)
T ss_dssp SEEEEE--B-HHHHHHHHHHHHHTTT
T ss_pred hhccCCCCCCHHHHHHHHHHHhCCCc
Confidence 566666666654 5677777777654
No 40
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=27.78 E-value=2.3e+02 Score=23.60 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q psy17017 339 SLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKK 380 (442)
Q Consensus 339 ~lLkkEle~~klq~~I~~~V~~k~~k~QRey~LrEQLK~Ikk 380 (442)
.-|++|+++++-|-+=.-+|-.-.-.+.| |+||++-+|.
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~r---L~ee~rrl~~ 65 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIR---LREELRRLQS 65 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34455555544333333344333344444 8899888875
No 41
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=27.62 E-value=7.3e+02 Score=26.01 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccHHH---------HHHHHhccCCCCCCChHHHHHHHHHhc-----CCCHHHHHHHHhc
Q psy17017 262 EFKALMQEVIKTVRDIISMNPLYKEQ---------LMILLQQENSPVVDNPIYLADLGAALT-----GAEGTEQQAILEE 327 (442)
Q Consensus 262 e~kAL~~eIi~~~~~~i~l~~~~~e~---------~~~~l~~~g~~~~ddp~~LaD~vAa~l-----~~~~~ekQ~lLe~ 327 (442)
-+-.|..+|++.+..++ ....+.. +.+.+.. | .-|...|++|++.++ |+-.++-.++.+.
T Consensus 53 ~~~~Ll~~ike~L~~ll--~~~~~~~I~e~LD~~li~Qq~~~-g---~~D~~~l~~~i~~~l~~~CAP~RD~~v~~l~~~ 126 (441)
T PF05794_consen 53 RLPQLLEEIKEILLSLL--PSRLRQEIEEVLDLELIRQQLEH-G---VLDLVKLARFIISLLKKLCAPMRDEEVKALVEK 126 (441)
T ss_pred HHHHHHHHHHHHHHHhc--CHHHHHHHHHHCChHHHHHHHhc-C---CcCHHHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Confidence 45677778887777666 2222222 2334444 3 567899999988886 4566667777775
Q ss_pred C----------CHHHHHHHHHHHH---HHHHHHHHH
Q psy17017 328 M----------DIPKRLMLSLSLL---KKELELNKL 350 (442)
Q Consensus 328 ~----------di~~RL~~~l~lL---kkEle~~kl 350 (442)
. ++.+.|+.++++| |-++.+..|
T Consensus 127 ~~~~~~~~~~~~~V~~lr~if~~le~MklD~AN~~i 162 (441)
T PF05794_consen 127 IEEGCTESSATDIVDGLRFIFEILELMKLDMANFQI 162 (441)
T ss_pred HHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 8888887776653 444444444
No 42
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.15 E-value=2.8e+02 Score=25.20 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=21.3
Q ss_pred HHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHcC
Q psy17017 392 IEEKFRERIKD-----KKVPPPVMEVLNEELAKLGF 422 (442)
Q Consensus 392 ei~elrekl~~-----~~lpeev~k~~~kEL~RL~~ 422 (442)
+++++.+||+. ..++++-++.+.++..++.+
T Consensus 124 e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 124 EIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRK 159 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 34455555553 45788899999998888754
No 43
>KOG4709|consensus
Probab=25.08 E-value=3.4e+02 Score=26.07 Aligned_cols=65 Identities=31% Similarity=0.453 Sum_probs=44.5
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-H-----HhhhhHHHHHHHHHHHHhhcCC
Q psy17017 320 EQQAILE-EMDIPKRLMLSLSLLKKELELNK-LQQKIGREVEEK-V-----KQQHRKYILQEQLKAIKKELGL 384 (442)
Q Consensus 320 ekQ~lLe-~~di~~RL~~~l~lLkkEle~~k-lq~~I~~~V~~k-~-----~k~QRey~LrEQLK~IkkELG~ 384 (442)
.++..|+ .+|-++|+..+-.+=++-++..+ .|..|..+.+++ + -.+||.-+|-|+|++..+|+..
T Consensus 22 kK~~~levsFDeekrkdylTGFHKRKveRrK~Aqeqikeq~ReerielRk~~rqerkr~LeErl~af~eednl 94 (217)
T KOG4709|consen 22 KKRPRLEVSFDEEKRKDYLTGFHKRKVERRKAAQEQIKEQLREERIELRKERRQERKRMLEERLEAFEEEDNL 94 (217)
T ss_pred cccCceeEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3444443 46777888888888777776655 445555554432 2 2577889999999999999875
No 44
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=24.45 E-value=3.7e+02 Score=25.51 Aligned_cols=90 Identities=18% Similarity=0.293 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCCC-hhHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy17017 337 SLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDD-KDAIEEKFRERIKDKKVPPPVMEVLNE 415 (442)
Q Consensus 337 ~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~e~dd-~~~ei~elrekl~~~~lpeev~k~~~k 415 (442)
.++-+++|+....++.-+....+=...+..|.-=|.++-+++...|.++... ......+|.+++. .+|.+|++.+..
T Consensus 94 e~er~KrEin~s~I~e~V~~ikrL~~~qekrqekL~~kh~e~lq~i~ee~~k~q~~l~~eye~k~~--~L~~Ei~~~v~~ 171 (185)
T PF08703_consen 94 EQERLKREINRSHIQEVVQEIKRLEEKQEKRQEKLEEKHEEVLQQIEEEEKKLQAELEQEYEEKMK--RLPQEIRESVQE 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHH
Confidence 3567888888888777665443333333333344555555665555521000 1223455666554 578899999988
Q ss_pred HHHHHcCCCCCCc
Q psy17017 416 ELAKLGFLESHSS 428 (442)
Q Consensus 416 EL~RL~~m~~~S~ 428 (442)
.+..=....|.+|
T Consensus 172 ~~~~~~~~~~~~~ 184 (185)
T PF08703_consen 172 CMKEGSGCFPSEP 184 (185)
T ss_dssp HHHH---H-----
T ss_pred HHHhccccCCCCC
Confidence 8776443334433
No 45
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.19 E-value=3e+02 Score=27.01 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH----------HHc
Q psy17017 352 QKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELA----------KLG 421 (442)
Q Consensus 352 ~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~e~dd~~~ei~elrekl~~~~lpeev~k~~~kEL~----------RL~ 421 (442)
.++...++..|.|-|| ||+|||.-..-=. -+ |+ .-+.++|..|+.. =+-.+.++||.+ .-.
T Consensus 41 EK~E~DLKkEIKKLQR---~RdQIK~W~~~~d-iK-dk-~~L~e~Rk~IE~~---MErFK~vEkesKtKafSkeGL~~~~ 111 (233)
T PF04065_consen 41 EKLEADLKKEIKKLQR---LRDQIKTWLSSND-IK-DK-KKLLENRKLIEEQ---MERFKVVEKESKTKAFSKEGLMAAS 111 (233)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHccCcc-cc-cH-HHHHHHHHHHHHH---HHHHHHHHHHhcccccchhhhhccc
Confidence 4555666777788888 8999998752100 01 22 2355566666530 011222222211 112
Q ss_pred CCCCCCchhHHHHHHHHHh
Q psy17017 422 FLESHSSEFNVTRNYLDWL 440 (442)
Q Consensus 422 ~m~~~S~E~~ViRnYLD~l 440 (442)
++.|...+..=++.||.-.
T Consensus 112 k~dp~e~ek~e~~~wl~~~ 130 (233)
T PF04065_consen 112 KLDPKEKEKEEARDWLKDS 130 (233)
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 4456666666666666543
No 46
>PRK10869 recombination and repair protein; Provisional
Probab=24.03 E-value=9.9e+02 Score=26.30 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHc
Q psy17017 407 PPVMEVLNEELAKLG 421 (442)
Q Consensus 407 eev~k~~~kEL~RL~ 421 (442)
+...+.+.++|+.|.
T Consensus 373 ~~l~~~v~~~L~~L~ 387 (553)
T PRK10869 373 KELAQLITESMHELS 387 (553)
T ss_pred HHHHHHHHHHHHHcC
Confidence 344455556666555
No 47
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.87 E-value=9.6e+02 Score=27.69 Aligned_cols=116 Identities=16% Similarity=0.048 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCCHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-----HHHHHH
Q psy17017 305 YLADLGAALTGAEGTEQ---QAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYI-----LQEQLK 376 (442)
Q Consensus 305 ~LaD~vAa~l~~~~~ek---Q~lLe~~di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey~-----LrEQLK 376 (442)
..|-.+|..++++.+-. .+++.. ...++..+++-|.++....+-+.+--.+.+.++++.+++|- |+++=+
T Consensus 483 S~a~~iA~~~Glp~~ii~~A~~~~~~--~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 483 SYAFEIAQRYGIPHFIIEQAKTFYGE--FKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560 (771)
T ss_pred cHHHHHHHHhCcCHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888876643 344443 34466666666655443333332222233333333333221 111111
Q ss_pred HHHhhcCCC----CCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC
Q psy17017 377 AIKKELGLE----KDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGF 422 (442)
Q Consensus 377 ~IkkELG~e----~dd~~~ei~elrekl~~~~lpeev~k~~~kEL~RL~~ 422 (442)
.+.+++-.+ -.....+++++.+++++.....+..+.+.+++++++.
T Consensus 561 ~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~ 610 (771)
T TIGR01069 561 NKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKE 610 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 111111100 0011234555556666655677777788888877654
No 48
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=23.67 E-value=2.8e+02 Score=24.98 Aligned_cols=20 Identities=30% Similarity=0.394 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHHHHHHcC
Q psy17017 403 KKVPPPVMEVLNEELAKLGF 422 (442)
Q Consensus 403 ~~lpeev~k~~~kEL~RL~~ 422 (442)
..+|++.++.+.+|+++-+.
T Consensus 111 rPlPeklk~Rl~~El~~AE~ 130 (135)
T TIGR03044 111 RPLPEKLKERLEKELKKAEK 130 (135)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999998653
No 49
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=23.39 E-value=7.7e+02 Score=24.80 Aligned_cols=128 Identities=20% Similarity=0.263 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHhccCCCCCCChHHHHHHHHHhc-----CCCHHHHHHHHhcCCHHHHH
Q psy17017 260 SEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALT-----GAEGTEQQAILEEMDIPKRL 334 (442)
Q Consensus 260 ~~e~kAL~~eIi~~~~~~i~l~~~~~e~~~~~l~~~g~~~~ddp~~LaD~vAa~l-----~~~~~ekQ~lLe~~di~~RL 334 (442)
...+..+.+.|+...-++.+.-..-...+..... .-||+++.-+- .++..+.-.++....=-++.
T Consensus 95 k~S~~silq~If~KHGDIAsNc~lkS~~~RS~yL----------e~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa 164 (269)
T PF05278_consen 95 KPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYL----------ECLCDIIQELQSTPLKELSESDLKEMIATLKDLESA 164 (269)
T ss_pred cHhHHHHHHHHHHhCccHhhccccCcHHHHHHHH----------HHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHc
Confidence 4566777777877777766633222333322211 23444444332 23344444555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHH-HHHHHHHHHHhhcCCCCCChhHHHHHHHHHHH
Q psy17017 335 MLSLSLLKKELELNKLQQKIGR---EVEEKVKQQHRKY-ILQEQLKAIKKELGLEKDDKDAIEEKFRERIK 401 (442)
Q Consensus 335 ~~~l~lLkkEle~~klq~~I~~---~V~~k~~k~QRey-~LrEQLK~IkkELG~e~dd~~~ei~elrekl~ 401 (442)
.+=+.||+.-++-.--..++.. ....+.+..-|+- ..++.|+..+.||. ..+.++.++++|+.
T Consensus 165 ~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~----~~Eke~~e~~~~i~ 231 (269)
T PF05278_consen 165 KVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELK----QKEKEVKEIKERIT 231 (269)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6666666655533222222211 1222222222221 22344555555554 23445566666663
No 50
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=23.23 E-value=8.4e+02 Score=28.03 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHhhcCC
Q psy17017 365 QHRKYILQEQLKAIKKELGL 384 (442)
Q Consensus 365 ~QRey~LrEQLK~IkkELG~ 384 (442)
....-++.++|+.|+++.|+
T Consensus 454 ~~~~~~i~~el~~ik~kfg~ 473 (738)
T TIGR01061 454 KARNKLLKKQLEEYKKQFAQ 473 (738)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 44566888999999999994
No 51
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.22 E-value=9.4e+02 Score=25.78 Aligned_cols=108 Identities=20% Similarity=0.126 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhhcC
Q psy17017 305 YLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKY-ILQEQLKAIKKELG 383 (442)
Q Consensus 305 ~LaD~vAa~l~~~~~ekQ~lLe~~di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey-~LrEQLK~IkkELG 383 (442)
....+.|+++...+. ....+ +||.-.-.-+.+--.....+++...+++..+.+..++. =|..||+....+|-
T Consensus 18 ~~~~l~~~~~~~s~s-----~~a~~--~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~ 90 (420)
T COG4942 18 LASLLSAAVLAAAFS-----AAADD--KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLK 90 (420)
T ss_pred HHHHHHhcccccchh-----HHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 444555666666666 22222 66665555444444444555555666666665555442 35555555554443
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHcCC
Q psy17017 384 LEKDDKDAIEEKFRERIKDKKVPP-PVMEVLNEELAKLGFL 423 (442)
Q Consensus 384 ~e~dd~~~ei~elrekl~~~~lpe-ev~k~~~kEL~RL~~m 423 (442)
.-...++.+..+|+.+.--+ +=+..+.+-|.=+-+|
T Consensus 91 ----~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 91 ----KLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRS 127 (420)
T ss_pred ----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11233444444444433322 3444555556666665
No 52
>COG4550 Predicted membrane protein [Function unknown]
Probab=23.07 E-value=5.2e+02 Score=22.71 Aligned_cols=57 Identities=11% Similarity=0.213 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhcCC----CCC----ChhHHHHHHHHHHHcCCCCHHHHHH
Q psy17017 356 REVEEKVKQQHRKYILQEQLKAIKKELGL----EKD----DKDAIEEKFRERIKDKKVPPPVMEV 412 (442)
Q Consensus 356 ~~V~~k~~k~QRey~LrEQLK~IkkELG~----e~d----d~~~ei~elrekl~~~~lpeev~k~ 412 (442)
++.+.+++.+|+=+-..++||.+|||-=. ++. ..+.-+++++++|...++=++.+..
T Consensus 28 q~aE~qin~n~~v~~~~~~iK~lQKeAVn~q~y~K~eAlkqses~i~~le~ei~~~PlVeefr~s 92 (120)
T COG4550 28 QQAEAQINANQKVKTKVDEIKKLQKEAVNLQHYDKEEALKQSESKIDELEAEIDHLPLVEEFRTS 92 (120)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 35566777777777777777777776310 000 1133466667777666665555443
No 53
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.70 E-value=2e+02 Score=23.46 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17017 333 RLMLSLSLLKKELELNK 349 (442)
Q Consensus 333 RL~~~l~lLkkEle~~k 349 (442)
||.-+|+.|+.|++...
T Consensus 1 Rl~elLd~ir~Ef~~~~ 17 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLS 17 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 56677777777776543
No 54
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=22.33 E-value=6.7e+02 Score=28.88 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHhcCCCHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17017 286 EQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSL--SLLKKELELNKLQQKIGREVEEKVK 363 (442)
Q Consensus 286 e~~~~~l~~~g~~~~ddp~~LaD~vAa~l~~~~~ekQ~lLe~~di~~RL~~~l--~lLkkEle~~klq~~I~~~V~~k~~ 363 (442)
+++..++++ .++| ..-+.....++...-++||+. ||+.+- +..+-+-|..+|+.+|..--.-=-+
T Consensus 383 DevI~iIR~-----s~~~---k~~L~~~f~ls~~QaeaIL~m-----rL~~L~~le~~~i~~E~~~l~~e~~~l~~~L~~ 449 (735)
T TIGR01062 383 DEVIEIIRE-----EDEP---KTILMERFKLSAIQAEAILNL-----RLRHLAKLEEHAIIDEQSELEKERAILEKILKS 449 (735)
T ss_pred HHHHHHHHc-----Chhh---HHHHHHhcCCCHHHHHHHHHh-----HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCC
Q ss_pred hhhhHHHHHHHHHHHHhhcC
Q psy17017 364 QQHRKYILQEQLKAIKKELG 383 (442)
Q Consensus 364 k~QRey~LrEQLK~IkkELG 383 (442)
+....-++.++|+.+++..|
T Consensus 450 ~~~~~~~i~~el~~~~~~~g 469 (735)
T TIGR01062 450 ERELNQLVKKEIQADATKYG 469 (735)
T ss_pred HHHHHHHHHHHHHHHHHHhC
No 55
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=22.32 E-value=2.4e+02 Score=27.27 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy17017 390 DAIEEKFRERIKDKKVPPPVMEVLNEELAKL 420 (442)
Q Consensus 390 ~~ei~elrekl~~~~lpeev~k~~~kEL~RL 420 (442)
+.|.+|+.+-.+.++++++..+.+-+++.|-
T Consensus 80 e~E~~el~~iy~~kG~~~~~a~~v~~~l~~~ 110 (225)
T cd02434 80 EGEKSEMVEIYSLKGLSEEVADQVVELLSKY 110 (225)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Confidence 4567777777777888888888877777653
No 56
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=22.31 E-value=5.6e+02 Score=29.48 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Q psy17017 391 AIEEKFRERIKDKKVPPPVMEVLNEELAKLGFL 423 (442)
Q Consensus 391 ~ei~elrekl~~~~lpeev~k~~~kEL~RL~~m 423 (442)
+.-+++.+|+.+.-=-++++++++-++.-..++
T Consensus 558 ~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~ 590 (762)
T PLN03229 558 KLKAEINKKFKEVMDRPEIKEKMEALKAEVASS 590 (762)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 334556666666444445555555444433333
No 57
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=22.27 E-value=3.1e+02 Score=22.45 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcCCCCCC----hhHHHHHHHHHHH----c----CCCCHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHH
Q psy17017 371 LQEQLKAIKKELGLEKDD----KDAIEEKFRERIK----D----KKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLD 438 (442)
Q Consensus 371 LrEQLK~IkkELG~e~dd----~~~ei~elrekl~----~----~~lpeev~k~~~kEL~RL~~m~~~S~E~~ViRnYLD 438 (442)
|+++|..++.||.. .+. ....+..+.+.|+ . ..-.+...+.+..-+.||+.-.|.- .+++|+-++
T Consensus 2 L~~~L~~L~~eL~~-~~~ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~FE~~HP~l--~~~lr~i~~ 78 (85)
T PF14357_consen 2 LQELLEKLHQELEQ-NPPLDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERFEASHPKL--AGILRNIMD 78 (85)
T ss_pred HHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHhCCcH--HHHHHHHHH
Confidence 78899999999984 222 1223344444444 3 2345667788888889999877765 356888888
Q ss_pred Hhh
Q psy17017 439 WLT 441 (442)
Q Consensus 439 ~l~ 441 (442)
+|.
T Consensus 79 sLa 81 (85)
T PF14357_consen 79 SLA 81 (85)
T ss_pred HHH
Confidence 764
No 58
>PHA02562 46 endonuclease subunit; Provisional
Probab=22.12 E-value=8.3e+02 Score=26.28 Aligned_cols=11 Identities=0% Similarity=0.160 Sum_probs=6.5
Q ss_pred hHHHHHHHHHh
Q psy17017 108 PLIDLIKRKVN 118 (442)
Q Consensus 108 ~~i~ai~~a~~ 118 (442)
..++||..++-
T Consensus 42 tll~aI~~~l~ 52 (562)
T PHA02562 42 TMLEALTFALF 52 (562)
T ss_pred HHHHHHHHHHc
Confidence 35666666664
No 59
>smart00076 IFabd Interferon alpha, beta and delta. Interferons produce antiviral and antiproliferative responses in cells. They are classified into five groups, all of them related but gamma-interferon.
Probab=21.87 E-value=3.3e+02 Score=23.76 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=24.3
Q ss_pred HHHHHHHHH----HHcCCCCHHHHHHHHHHHHH
Q psy17017 391 AIEEKFRER----IKDKKVPPPVMEVLNEELAK 419 (442)
Q Consensus 391 ~ei~elrek----l~~~~lpeev~k~~~kEL~R 419 (442)
-.+.+|-.| |++++.+..|.+++..|+.|
T Consensus 83 l~lk~YF~rI~~yLk~K~YS~CAWEiVR~Ei~r 115 (117)
T smart00076 83 LALRKYFQRIQLYLKEKKYSPCAWEVVRAEIRR 115 (117)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 456777666 57899999999999999987
No 60
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.71 E-value=6.7e+02 Score=25.62 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHc
Q psy17017 328 MDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVK----QQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKD 402 (442)
Q Consensus 328 ~di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~----k~QRey~LrEQLK~IkkELG~e~dd~~~ei~elrekl~~ 402 (442)
.++.+.|..-++.|+.+.+.+.-+..+-..+..++. .-+.+. ++|+.++.|+.. =+.++.++++++|++
T Consensus 143 egLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~---~~L~~~~~e~~~---~d~~eL~~lk~~l~~ 215 (312)
T smart00787 143 EGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEEL---RQLKQLEDELED---CDPTELDRAKEKLKK 215 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHh---CCHHHHHHHHHHHHH
Confidence 467777777777787777766544444444433332 222222 345555555541 123455556655554
No 61
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=21.58 E-value=3.1e+02 Score=24.53 Aligned_cols=17 Identities=41% Similarity=0.694 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHhhcC
Q psy17017 367 RKYILQEQLKAIKKELG 383 (442)
Q Consensus 367 Rey~LrEQLK~IkkELG 383 (442)
-+|.|++.|+.+-+|+.
T Consensus 79 Nky~L~~tL~~LtkEVn 95 (132)
T PF09432_consen 79 NKYSLQDTLNQLTKEVN 95 (132)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 36999999999998864
No 62
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.36 E-value=3.5e+02 Score=25.11 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHc
Q psy17017 390 DAIEEKFRERIKD 402 (442)
Q Consensus 390 ~~ei~elrekl~~ 402 (442)
..+++++++.|++
T Consensus 160 ~~ei~~lk~el~~ 172 (192)
T PF05529_consen 160 SEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555554
No 63
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.89 E-value=5.6e+02 Score=31.09 Aligned_cols=72 Identities=26% Similarity=0.467 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhcCCCCC----ChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc-CCCCCCchhHHHHHHHHHhh
Q psy17017 370 ILQEQLKAIKKELGLEKD----DKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLG-FLESHSSEFNVTRNYLDWLT 441 (442)
Q Consensus 370 ~LrEQLK~IkkELG~e~d----d~~~ei~elrekl~~~~lpeev~k~~~kEL~RL~-~m~~~S~E~~ViRnYLD~l~ 441 (442)
-+.+|+..|+.++-.... ....--..|..+|+..++.+.....+.++|..|+ .+..-...-.-+.-|-+|+-
T Consensus 729 ~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~ 805 (1201)
T PF12128_consen 729 ELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQ 805 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345555666555441111 1122234567788889999988888888887665 22222333345677887763
No 64
>PF09004 DUF1891: Domain of unknown function (DUF1891); InterPro: IPR015095 This domain is found at the extreme N terminus of eukaryotic alkylated DNA repair protein homologs. ; GO: 0008168 methyltransferase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 2CQ2_A 3THT_C 3THP_A.
Probab=20.60 E-value=33 Score=24.65 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHH
Q psy17017 364 QQHRKYILQEQLKA 377 (442)
Q Consensus 364 k~QRey~LrEQLK~ 377 (442)
-+||-||||.+-|+
T Consensus 12 a~qRlyFLRkl~k~ 25 (42)
T PF09004_consen 12 AQQRLYFLRKLRKF 25 (42)
T ss_dssp --------------
T ss_pred HHhHHHHHHHHHHc
Confidence 46799999987554
No 65
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=20.50 E-value=4.4e+02 Score=23.57 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHH
Q psy17017 329 DIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYI-LQEQL 375 (442)
Q Consensus 329 di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey~-LrEQL 375 (442)
..+.-+..+-++++++-.+..++++....+...+.+.+.+|. .+|+|
T Consensus 12 ~~e~~~e~lee~~ek~eq~~~~r~~e~~~~~~~i~e~~~~~~~~~e~~ 59 (128)
T COG2916 12 ARETYLELLEEMLEKEEQVVQERQEEEAAAIAEIEERQEKYGTIRELL 59 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888999999999999999998888886 44543
No 66
>PF13228 DUF4037: Domain of unknown function (DUF4037)
Probab=20.45 E-value=1.4e+02 Score=25.27 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHcCCCCCCchhHHHH
Q psy17017 390 DAIEEKFRERIKDKKVPPPVMEV-LNEELAKLGFLESHSSEFNVTR 434 (442)
Q Consensus 390 ~~ei~elrekl~~~~lpeev~k~-~~kEL~RL~~m~~~S~E~~ViR 434 (442)
..++.++|+++ ...|+++++. +..-+.++.. |-+|++-|
T Consensus 22 ~G~~~~~R~~l--~~YP~dl~~~~ia~~~~~~~q----a~~~n~~r 61 (100)
T PF13228_consen 22 LGEFTALRERL--AYYPEDLRLNKIARNLMLLAQ----AGQYNLGR 61 (100)
T ss_pred CchHHHHHHHH--HHChHHHHHHHHHHHHHHhhh----hhHHHHHH
Confidence 34788999999 8999999987 6666666654 55666544
No 67
>KOG0681|consensus
Probab=20.21 E-value=1.4e+02 Score=32.92 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCC
Q psy17017 390 DAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLES 425 (442)
Q Consensus 390 ~~ei~elrekl~~~~lpeev~k~~~kEL~RL~~m~~ 425 (442)
+...++.++||.++..-.-.+-+.+||..|+.+|+.
T Consensus 345 d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~ 380 (645)
T KOG0681|consen 345 DQLKEKKKQRILKASTDARLRARVEKELERLNKLEE 380 (645)
T ss_pred HHHHHHHHHHHHHhhhhhhccccccchHHHhhcccc
Confidence 456788999999999888889999999999988764
No 68
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=20.16 E-value=2.8e+02 Score=27.09 Aligned_cols=31 Identities=6% Similarity=-0.054 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy17017 390 DAIEEKFRERIKDKKVPPPVMEVLNEELAKL 420 (442)
Q Consensus 390 ~~ei~elrekl~~~~lpeev~k~~~kEL~RL 420 (442)
+.|.+++.+-.++++++++..+.+-+++.|-
T Consensus 97 ~~e~~el~~iy~~~G~~~~~a~~~~~~l~~~ 127 (234)
T cd02433 97 LEEAAELALIYRAKGLDEEEAKRVASQLMND 127 (234)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Confidence 3467778888888888888888888888763
Done!