Query psy17017
Match_columns 442
No_of_seqs 210 out of 1560
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 19:39:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ljc_A ATP-dependent protease 100.0 3.8E-51 1.3E-55 397.5 27.3 230 83-384 17-250 (252)
2 3m65_A ATP-dependent protease 100.0 1.8E-37 6.2E-42 292.9 25.6 198 83-352 8-209 (209)
3 1zbo_A Hypothetical protein BP 100.0 3.9E-33 1.3E-37 263.5 22.5 188 83-348 3-203 (210)
4 2ane_A ATP-dependent protease 99.9 1.6E-21 5.4E-26 170.3 14.8 93 83-176 17-113 (125)
5 3u0c_A Invasin IPAB, 62 kDa an 51.4 64 0.0022 28.8 8.4 105 326-437 46-158 (201)
6 4b4t_K 26S protease regulatory 50.0 20 0.00068 36.7 5.7 39 339-380 52-91 (428)
7 4dhx_B Enhancer of yellow 2 tr 38.1 36 0.0012 27.8 4.4 31 390-420 27-57 (101)
8 4b4t_K 26S protease regulatory 36.2 19 0.00063 36.9 2.9 59 322-380 11-70 (428)
9 1use_A VAsp, vasodilator-stimu 33.6 72 0.0025 22.3 4.6 33 346-383 8-40 (45)
10 2kmf_A Photosystem II 11 kDa p 31.4 1.5E+02 0.0052 24.7 7.3 20 402-421 89-108 (115)
11 3lpx_A GYRA, DNA gyrase, A sub 28.8 1.4E+02 0.0049 31.0 8.1 65 314-384 418-485 (500)
12 2y6x_A PSB27, photosystem II 1 27.6 1.9E+02 0.0066 24.0 7.2 19 403-421 86-104 (113)
13 2kl8_A OR15; structural genomi 27.3 32 0.0011 26.0 2.1 20 403-422 47-66 (85)
14 3iv1_A Tumor susceptibility ge 26.5 1.4E+02 0.0047 23.3 5.7 33 348-383 6-38 (78)
15 2gtv_X CM, chorismate mutase; 25.2 2.7E+02 0.0093 22.5 7.7 51 370-420 36-89 (104)
16 2cly_C ATP synthase coupling f 24.8 54 0.0019 25.5 3.1 32 392-423 15-50 (77)
17 3mhs_B Protein SUS1; multi-pro 24.5 88 0.003 25.2 4.5 33 388-420 21-53 (96)
18 2lse_A Four helix bundle prote 30.2 16 0.00054 28.5 0.0 45 376-422 36-82 (101)
19 3a7o_A Autophagy protein 16; c 23.4 60 0.002 24.9 3.0 30 368-401 13-42 (75)
20 4gmq_A Putative ribosome assoc 23.2 1.3E+02 0.0046 24.6 5.3 42 374-421 47-88 (103)
21 1upt_B Golgi autoantigen, golg 23.0 59 0.002 24.1 2.9 33 302-334 22-54 (60)
22 1gmj_A ATPase inhibitor; coile 21.7 37 0.0013 26.9 1.6 10 373-382 40-49 (84)
23 3v57_A Phycoerythrin alpha sub 20.7 1.3E+02 0.0044 26.5 5.2 49 393-441 110-160 (164)
24 1lj2_A NSP3-C, nonstructural R 20.4 43 0.0015 27.6 1.8 39 390-428 34-72 (110)
No 1
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=100.00 E-value=3.8e-51 Score=397.55 Aligned_cols=230 Identities=22% Similarity=0.391 Sum_probs=210.6
Q ss_pred ceeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEe-ccCc--CCCccccccccceEEEEEEeecCCc-e
Q psy17017 83 HLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDH-KVSL--VKDLSEVYSVGSFVHIREVLTLPDR-L 158 (442)
Q Consensus 83 ~lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl-~~~~--v~~~~dly~vGTla~I~~~~~l~d~-~ 158 (442)
.+|+|||+++|+|||+++||+||+++|++||++|++.++ .||+++ ++.. .++.+++|+|||+|+|.++.++||| +
T Consensus 17 ~lPl~PLr~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~~-~~~lv~q~~~~~~~p~~~~l~~vGt~a~I~~~~~lpdG~~ 95 (252)
T 3ljc_A 17 EIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDK-KIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTV 95 (252)
T ss_dssp CCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTTT-EEEEEEBCSSCCSSCCSSSBCSEEEEEEECCCBCCTTSCE
T ss_pred ceeEEEeCCccccCCcceEEEECCHHHHHHHHHHHhcCC-EEEEEEecCCCcCCCCccchhheeEEEEEEEEEECCCCeE
Confidence 499999999999999999999999999999999999765 567777 4333 2467899999999999999999998 9
Q ss_pred EEEEEeeeEEEEeeeeccCCCCccccccCCCCCCCCccchhhhccCCCccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q psy17017 159 RLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPGP 238 (442)
Q Consensus 159 rvlV~G~~RvrI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (442)
+|+|+|++||+|.++...
T Consensus 96 ~v~v~G~~R~rI~~~~~~-------------------------------------------------------------- 113 (252)
T 3ljc_A 96 KVLVEGLQRARISALSDN-------------------------------------------------------------- 113 (252)
T ss_dssp EEEEEEEEEEECSEEEEE--------------------------------------------------------------
T ss_pred EEEEEEEEEEEEEEEEcC--------------------------------------------------------------
Confidence 999999999999998765
Q ss_pred CCCCCceEEEEEeecCCCcCCcHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHhccCCCCCCChHHHHHHHHHhcCCCH
Q psy17017 239 DEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEG 318 (442)
Q Consensus 239 ~~~~p~l~a~Ve~l~~~~~~~~~e~kAL~~eIi~~~~~~i~l~~~~~e~~~~~l~~~g~~~~ddp~~LaD~vAa~l~~~~ 318 (442)
+||+.|+|+.++++.. .+.+.+|+++.+++.|++|+.+++.++.++...+.+ ++||.+|||++|++++++.
T Consensus 114 ---~~~~~a~ve~l~d~~~-~~~e~~al~~~l~~~~~~~~~l~~~~~~e~~~~~~~-----~~dp~~Lad~ia~~l~l~~ 184 (252)
T 3ljc_A 114 ---GEHFSAKAEYLESPTI-DEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNS-----IDDPARLADTIAAHMPLKL 184 (252)
T ss_dssp ---TTEEEEECCCCCCCCS-CHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHTTS-----CCCHHHHHHHHHHTSCCCH
T ss_pred ---CCcEEEEEEeecCCCC-CChHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHc-----cCCHHHHHHHHHHhCCCCH
Confidence 3899999999976543 356889999999999999999999998888777776 8999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCC
Q psy17017 319 TEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGL 384 (442)
Q Consensus 319 ~ekQ~lLe~~di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~ 384 (442)
++||+|||+.|+.+||.+++.+|.+|+++++++++|+++|+++|+|+|||||||||||+||||||+
T Consensus 185 ~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELGe 250 (252)
T 3ljc_A 185 ADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGE 250 (252)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999994
No 2
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.8e-37 Score=292.90 Aligned_cols=198 Identities=18% Similarity=0.341 Sum_probs=178.6
Q ss_pred ceeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEe-ccCc--CCCccccccccceEEEEEEeecCCc-e
Q psy17017 83 HLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDH-KVSL--VKDLSEVYSVGSFVHIREVLTLPDR-L 158 (442)
Q Consensus 83 ~lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl-~~~~--v~~~~dly~vGTla~I~~~~~l~d~-~ 158 (442)
.+|+|||+++|+|||+++||+|++++|++||++|++.+ .+||+++ ++.. .++.+++|+|||+|+|.++.++||| +
T Consensus 8 ~lPl~PLr~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~-~~i~lv~q~~~~~~~p~~~~l~~vGt~a~I~~~~~l~dG~~ 86 (209)
T 3m65_A 8 SIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHD-HMIFLATQQDISIDEPGEDEIFTVGTYTKIKQMLKLPNGTI 86 (209)
T ss_dssp EEEEEEESSCCCCTTCEEEEEECSHHHHHHHHHHTTTT-SEEEEEEBSSTTCSSCCGGGBCSEEEEEEEEEEEECTTSCE
T ss_pred ceEEEEeCCccccCCccEEEEECCHHHHHHHHHHHhcC-CEEEEEEecCCCcCCCCcchhhheeEEEEEEEEEECCCCeE
Confidence 59999999999999999999999999999999999875 5778887 4333 2467899999999999999999997 9
Q ss_pred EEEEEeeeEEEEeeeeccCCCCccccccCCCCCCCCccchhhhccCCCccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q psy17017 159 RLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPGP 238 (442)
Q Consensus 159 rvlV~G~~RvrI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (442)
+|+|+|++||||.++...
T Consensus 87 ~v~v~G~~R~ri~~~~~~-------------------------------------------------------------- 104 (209)
T 3m65_A 87 RVLVEGLKRAHIVKYNEH-------------------------------------------------------------- 104 (209)
T ss_dssp EEEEEEEEEEEEEEEEEC--------------------------------------------------------------
T ss_pred EEEEEEEEEEEEEEEEcC--------------------------------------------------------------
Confidence 999999999999998775
Q ss_pred CCCCCceEEEEEeecCCCcCCcHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHhccCCCCCCChHHHHHHHHHhcCCCH
Q psy17017 239 DEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEG 318 (442)
Q Consensus 239 ~~~~p~l~a~Ve~l~~~~~~~~~e~kAL~~eIi~~~~~~i~l~~~~~e~~~~~l~~~g~~~~ddp~~LaD~vAa~l~~~~ 318 (442)
+||+.|+|+.++++.. .+.+.+|+++.+++.|++|+.+++.++.++...+.+ ++||.+|||++|++++++.
T Consensus 105 ---~~~~~a~v~~~~~~~~-~~~e~~al~~~l~~~~~~~~~~~~~~~~e~~~~~~~-----~~dp~~lad~ia~~l~l~~ 175 (209)
T 3m65_A 105 ---EDYTSVDIQLIHEDDS-KDTEDEALMRTLLDHFDQYIKISKKISAETYAAVTD-----IEEPGRMADIVASHLPLKL 175 (209)
T ss_dssp ---SSSEEEEEEECCCC---CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHHSCCCH
T ss_pred ---CCcEEEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHc-----cCCHHHHHHHHHHhCCCCH
Confidence 3899999999987542 356889999999999999999998888888777776 9999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy17017 319 TEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQ 352 (442)
Q Consensus 319 ~ekQ~lLe~~di~~RL~~~l~lLkkEle~~klq~ 352 (442)
++||+|||+.|+.+||++++.+|++|+++++||+
T Consensus 176 ~ekQ~lLe~~d~~~Rl~~l~~~L~~E~e~~~l~~ 209 (209)
T 3m65_A 176 KDKQDILETADVKDRLNKVIDFINNEKEVLEIEK 209 (209)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999863
No 3
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=100.00 E-value=3.9e-33 Score=263.45 Aligned_cols=188 Identities=14% Similarity=0.112 Sum_probs=158.2
Q ss_pred ceeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEe-ccCc-CC---CccccccccceEEEEEEeecCCc
Q psy17017 83 HLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDH-KVSL-VK---DLSEVYSVGSFVHIREVLTLPDR 157 (442)
Q Consensus 83 ~lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl-~~~~-v~---~~~dly~vGTla~I~~~~~l~d~ 157 (442)
.+|+||| ++|+|||+++||+|++++|++||++|++.++ .||+++ ++.. ++ ..+|+|+|||+|+|.++.++|||
T Consensus 3 ~lPl~PL-~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~~-~~glv~~~~~~~~~~~~~~~dl~~vGt~a~I~~~~~lpdG 80 (210)
T 1zbo_A 3 EIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADGS-EFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPA 80 (210)
T ss_dssp EEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTTC-CEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTT
T ss_pred EeeEEec-CeeecCCCceeeEECCHHHHHHHHHHHhcCC-cEEEEEeCCCcccCcccccCchhceEEEEEEEEEEeCCCc
Confidence 5999999 9999999999999999999999999999764 568887 4332 22 25889999999999999999998
Q ss_pred -eEEEEEeeeEEEEee-eeccCCCCccccccCCCCCCCCccchhhhccCCCccccccccccCCCCCCCCCCCCCCCCCCC
Q psy17017 158 -LRLVLLAHRRIKIVA-PYEDVDEGPKVMNLKFPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPG 235 (442)
Q Consensus 158 -~rvlV~G~~RvrI~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (442)
++|+|+|.+||||.+ +.+.
T Consensus 81 ~~~v~v~G~~R~rI~~~~~~~----------------------------------------------------------- 101 (210)
T 1zbo_A 81 LLELACTGTGRFRLHACTQGK----------------------------------------------------------- 101 (210)
T ss_dssp CEEEEEEEEEEEEEEEEEECG-----------------------------------------------------------
T ss_pred eEEEEEEEEEEEEEEEEeecC-----------------------------------------------------------
Confidence 999999999999965 4443
Q ss_pred CCCCCCCCceEEEEEeecCCCc-CCcHHHHHHHHHHHHHHHHHHHhC-----cccHHHHHHHHhccCCCCCCChHHHHHH
Q psy17017 236 PGPDEPKPVTMVEVVNLKHEKF-KQSEEFKALMQEVIKTVRDIISMN-----PLYKEQLMILLQQENSPVVDNPIYLADL 309 (442)
Q Consensus 236 ~~~~~~~p~l~a~Ve~l~~~~~-~~~~e~kAL~~eIi~~~~~~i~l~-----~~~~e~~~~~l~~~g~~~~ddp~~LaD~ 309 (442)
.||+.|+|+.+++++. ..+.+.+||++.+++.|++|++++ +.++. +. .++||.+|||+
T Consensus 102 ------~~y~~a~ve~l~~~~~~~~~~e~~al~~~l~~~~~~~~~~~~~~~~~~l~~-----~~-----~~~dp~~lad~ 165 (210)
T 1zbo_A 102 ------YGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAA-----PF-----RLDDCGWVADR 165 (210)
T ss_dssp ------GGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCS-----CC-----CTTCHHHHHHH
T ss_pred ------CCcEEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHHHHhccccccccCCC-----cC-----CCCCHHHHHHH
Confidence 3899999999987542 245688999999999999999987 33322 22 38899999999
Q ss_pred HHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q psy17017 310 GAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELN 348 (442)
Q Consensus 310 vAa~l~~~~~ekQ~lLe~~di~~RL~~~l~lLkkEle~~ 348 (442)
+|++++++.++||+|||+ |+.+||++++.+|++|+.-.
T Consensus 166 ia~~l~l~~~ekQ~lLe~-d~~~Rl~~l~~~L~~e~~~~ 203 (210)
T 1zbo_A 166 WAEMLSLPPADKARLLLL-PPLDRLREIDAVLAADGHAL 203 (210)
T ss_dssp HHHHSCCCHHHHHHHHHS-CHHHHHHHHHHHHHC-----
T ss_pred HHHhCCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999 99999999999999987654
No 4
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10
Probab=99.87 E-value=1.6e-21 Score=170.34 Aligned_cols=93 Identities=15% Similarity=0.353 Sum_probs=82.3
Q ss_pred ceeEEeecCCCcCCCceeEEEeCChhHHHHHHHHHhcCCCeEEEEe-ccCc--CCCccccccccceEEEEEEeecCCc-e
Q psy17017 83 HLPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDH-KVSL--VKDLSEVYSVGSFVHIREVLTLPDR-L 158 (442)
Q Consensus 83 ~lPlipLr~~vlFPg~~~~L~I~~~~~i~ai~~a~~~~~~~igvfl-~~~~--v~~~~dly~vGTla~I~~~~~l~d~-~ 158 (442)
.||+|||+++|+|||+++||+|+++++++||++|++.++ .||+++ ++.. .++.+|+|+|||+|+|.++.++||| +
T Consensus 17 ~lPl~PLr~~vlfPg~~~pL~V~~~r~i~~v~~a~~~~~-~i~lv~~k~~~~~~p~~~dl~~vGt~a~I~~~~~lpdG~~ 95 (125)
T 2ane_A 17 EIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDK-KIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTV 95 (125)
T ss_dssp EEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTTS-EEEEEEBCTTCCSSCCGGGBCSEEEEEEEEEEEECTTSCE
T ss_pred eEEEEEeCCeeeCCCccEEEEECCHHHHHHHHHHHhcCC-EEEEEEecCCCccCCCccchhccEEEEEEEEEeeCCCCcE
Confidence 499999999999999999999999999999999998765 466776 4322 2467899999999999999999998 9
Q ss_pred EEEEEeeeEEEEeeeecc
Q psy17017 159 RLVLLAHRRIKIVAPYED 176 (442)
Q Consensus 159 rvlV~G~~RvrI~~~~~~ 176 (442)
+|+|+|++||||.++.+.
T Consensus 96 ~ilv~G~~R~rI~~~~~~ 113 (125)
T 2ane_A 96 KVLVEGLQRARISALSDN 113 (125)
T ss_dssp EEEEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEEEEEEcC
Confidence 999999999999998654
No 5
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=51.43 E-value=64 Score=28.83 Aligned_cols=105 Identities=21% Similarity=0.247 Sum_probs=59.6
Q ss_pred hcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHc
Q psy17017 326 EEMDIPKRLMLSLSLLKKEL---ELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKD 402 (442)
Q Consensus 326 e~~di~~RL~~~l~lLkkEl---e~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG~e~dd~~~ei~elrekl~~ 402 (442)
|+++-+-||-++|--|..=+ -+..|..+|.... ..+++|+-.-+|--.+|+--|+. .+..-+-|...+.+
T Consensus 46 e~Lna~grLTLLLGnL~~IlG~~SlTqL~nrL~~wl---sQ~em~~qks~EFSD~~qTaL~e----AQ~AtD~y~~Ainn 118 (201)
T 3u0c_A 46 KSLNASSQLTLLIGNLIQILGEKSLTALTNKITAWK---SQQQARQQKNLEFSDKINTLLSE----TEGLTRDYEKQINK 118 (201)
T ss_dssp ---CHHHHHHHHHHHHHHHHCSGGGHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hhcCcchhHHHHHHHHHHHhcchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Confidence 88999999999887665422 2344444444333 34455555555655666666652 12223445555555
Q ss_pred CCCCH----HHHHHHHHHHHHHcCCCCCCchhH-HHHHHH
Q psy17017 403 KKVPP----PVMEVLNEELAKLGFLESHSSEFN-VTRNYL 437 (442)
Q Consensus 403 ~~lpe----ev~k~~~kEL~RL~~m~~~S~E~~-ViRnYL 437 (442)
.+--+ ...++++.==.||..|.|.+|+|+ |.|.-+
T Consensus 119 y~~Ads~~~~lekKvn~aq~kLs~L~P~dP~Y~K~~~~~~ 158 (201)
T 3u0c_A 119 LKNADSKIKDLENKINQIQTRLSELDPESPEKKKLSREEI 158 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCSSCTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccHHHH
Confidence 44333 334455555568899999999998 445433
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.04 E-value=20 Score=36.69 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHh
Q psy17017 339 SLLKKELELNKLQQKIGREVEEKVKQQHRKY-ILQEQLKAIKK 380 (442)
Q Consensus 339 ~lLkkEle~~klq~~I~~~V~~k~~k~QRey-~LrEQLK~Ikk 380 (442)
..|.++++.+.+|++ .+++++...++++ .++|++|.||.
T Consensus 52 k~le~~~~~L~~e~e---~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 52 KKLEKEYELLTLQED---YIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 446677777777754 5667777788887 89999999986
No 7
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=38.08 E-value=36 Score=27.81 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy17017 390 DAIEEKFRERIKDKKVPPPVMEVLNEELAKL 420 (442)
Q Consensus 390 ~~ei~elrekl~~~~lpeev~k~~~kEL~RL 420 (442)
+..-+.|++||.+.+|-+++++.+..+++.-
T Consensus 27 erL~~lL~~rL~EcGW~Devr~~~r~~i~~~ 57 (101)
T 4dhx_B 27 ERLKELLRAKLIECGWKDQLKAHCKEVIKEK 57 (101)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHc
Confidence 3444556666666666666666666666543
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.23 E-value=19 Score=36.89 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=12.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHh
Q psy17017 322 QAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKY-ILQEQLKAIKK 380 (442)
Q Consensus 322 Q~lLe~~di~~RL~~~l~lLkkEle~~klq~~I~~~V~~k~~k~QRey-~LrEQLK~Ikk 380 (442)
..++++.....+...++.-+.+..........+..++..++.+.||++ +|.-|-..|+.
T Consensus 11 ~~~~~e~~~~~~~~~l~~~l~~~~~~~~~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~ 70 (428)
T 4b4t_K 11 EKAVEEKPAVKSYASLLAQLNGTVNNNSALSNVNSDIYFKLKKLEKEYELLTLQEDYIKD 70 (428)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHHHHHHHHhhccchhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666677776666666666677777777766664 44444344433
No 9
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=33.56 E-value=72 Score=22.29 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q psy17017 346 ELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELG 383 (442)
Q Consensus 346 e~~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG 383 (442)
++-+++++|-++|+..+.|..- |=|.||+.||.
T Consensus 8 dle~~KqEIL~E~RkElqK~K~-----EIIeAi~~El~ 40 (45)
T 1use_A 8 DLQRVKQELLEEVKKELQKVKE-----EIIEAFVQELR 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 3455666777777777766543 44566666654
No 10
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=31.37 E-value=1.5e+02 Score=24.68 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=17.8
Q ss_pred cCCCCHHHHHHHHHHHHHHc
Q psy17017 402 DKKVPPPVMEVLNEELAKLG 421 (442)
Q Consensus 402 ~~~lpeev~k~~~kEL~RL~ 421 (442)
.+.||+..++++++||++-+
T Consensus 89 ~~PlPek~k~Rl~~el~~AE 108 (115)
T 2kmf_A 89 ARPIPEKLKKRLQLEFTQAE 108 (115)
T ss_dssp SCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 37899999999999999865
No 11
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=28.85 E-value=1.4e+02 Score=31.01 Aligned_cols=65 Identities=20% Similarity=0.162 Sum_probs=36.2
Q ss_pred cCCCHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhhcCC
Q psy17017 314 TGAEGTEQQAILEEMDIPKRLMLS--LSLLKKELELNKLQQKIGREVEEKVK-QQHRKYILQEQLKAIKKELGL 384 (442)
Q Consensus 314 l~~~~~ekQ~lLe~~di~~RL~~~--l~lLkkEle~~klq~~I~~~V~~k~~-k~QRey~LrEQLK~IkkELG~ 384 (442)
..++...-++||+. ||+.+ |+..+-+-|..+|..+|.. .++=+. +....-+++++|+.|+++.|.
T Consensus 418 f~lse~Qa~aIl~m-----rL~rLt~le~~ki~~E~~~l~~~i~~-l~~iL~~~~~~~~~i~~el~~i~~~~g~ 485 (500)
T 3lpx_A 418 YYLTAEQAKAIVDL-----QLYKLSGMEHDKILSEYKALLDLIAE-LMHILATPARLMEVICEELVAIRDEFGD 485 (500)
T ss_dssp ---CHHHHHHHHTC-----BGGGGSHHHHHHHHHHHHHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHh-----HHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 44666666778875 45444 2333333344555555543 233332 334445788999999999993
No 12
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=27.59 E-value=1.9e+02 Score=24.00 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHHHHHHc
Q psy17017 403 KKVPPPVMEVLNEELAKLG 421 (442)
Q Consensus 403 ~~lpeev~k~~~kEL~RL~ 421 (442)
+.||+..++++++||++-+
T Consensus 86 ~PlPek~k~Rl~~el~~AE 104 (113)
T 2y6x_A 86 RPLPEKLKARLEQEFKQVE 104 (113)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 7899999999999999854
No 13
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=27.30 E-value=32 Score=26.03 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHHHHcC
Q psy17017 403 KKVPPPVMEVLNEELAKLGF 422 (442)
Q Consensus 403 ~~lpeev~k~~~kEL~RL~~ 422 (442)
.++|+.|++.+.||-.||.+
T Consensus 47 tgvpeqvrkelakeaerlak 66 (85)
T 2kl8_A 47 TGVPEQVRKELAKEAERLAK 66 (85)
T ss_dssp ESCCHHHHHHHHHHHHHHHH
T ss_pred ecChHHHHHHHHHHHHHHHH
Confidence 57999999999999999975
No 14
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=26.53 E-value=1.4e+02 Score=23.31 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q psy17017 348 NKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELG 383 (442)
Q Consensus 348 ~klq~~I~~~V~~k~~k~QRey~LrEQLK~IkkELG 383 (442)
.-++.++++++++.|++.|-|. +-|+-.+.||-
T Consensus 6 SAVeDKLRrrl~E~~~q~qaEl---~sLrrT~~EL~ 38 (78)
T 3iv1_A 6 SAVSDKLRWRMKEEMDRAQAEL---NALKRTEEDLK 38 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHH
Confidence 4567788888888888888876 66777788886
No 15
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=25.20 E-value=2.7e+02 Score=22.51 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhcCCCCCC---hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy17017 370 ILQEQLKAIKKELGLEKDD---KDAIEEKFRERIKDKKVPPPVMEVLNEELAKL 420 (442)
Q Consensus 370 ~LrEQLK~IkkELG~e~dd---~~~ei~elrekl~~~~lpeev~k~~~kEL~RL 420 (442)
-|-+++-.+|++.|..--| +...++.+++..++.+++++..+.+.++|=.-
T Consensus 36 ~l~~~Va~~K~~~g~pi~dp~RE~~vl~~~~~~~~~~~l~~~~i~~if~~ii~~ 89 (104)
T 2gtv_X 36 SLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIFQRLIEH 89 (104)
T ss_dssp HHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCcChHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 3556777788888842122 23446777777777899999999888887543
No 16
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=24.84 E-value=54 Score=25.54 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcC----CCCHHHHHHHHHHHHHHcCC
Q psy17017 392 IEEKFRERIKDK----KVPPPVMEVLNEELAKLGFL 423 (442)
Q Consensus 392 ei~elrekl~~~----~lpeev~k~~~kEL~RL~~m 423 (442)
-+.+|+.|-+.. ...+++.+.+.+||.||.++
T Consensus 15 KIREYk~Ks~~~G~lVD~~Pe~~kel~~el~kL~~~ 50 (77)
T 2cly_C 15 KIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQM 50 (77)
T ss_dssp HHHHHHHHHTCCSSSSSCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 466777665532 36889999999999999865
No 17
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=24.52 E-value=88 Score=25.21 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy17017 388 DKDAIEEKFRERIKDKKVPPPVMEVLNEELAKL 420 (442)
Q Consensus 388 d~~~ei~elrekl~~~~lpeev~k~~~kEL~RL 420 (442)
+.+..-+-|++||.+.+|-+++++.+..++++=
T Consensus 21 e~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~ 53 (96)
T 3mhs_B 21 NYELISNELKARLLQEGWVDKVKDLTKSEMNIN 53 (96)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhc
Confidence 334445556777777777777777777777654
No 18
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.23 E-value=16 Score=28.47 Aligned_cols=45 Identities=44% Similarity=0.598 Sum_probs=34.5
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcC
Q psy17017 376 KAIKKELGLEKDDKDAIEEKFRERIKD--KKVPPPVMEVLNEELAKLGF 422 (442)
Q Consensus 376 K~IkkELG~e~dd~~~ei~elrekl~~--~~lpeev~k~~~kEL~RL~~ 422 (442)
|-.+.||. ++ |...-+++||..++. +..|-.|++.+.+||.+|-+
T Consensus 36 kdvkdele-eg-daknmiekfrdemeqmykdapnavmeqlleeiekllk 82 (101)
T 2lse_A 36 KDVKDELE-EG-DAKNMIEKFRDEMEQMYKDAPNAVMEQLLEEIEKLLK 82 (101)
Confidence 45677876 33 445678899998887 46899999999999998754
No 19
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=23.40 E-value=60 Score=24.87 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHH
Q psy17017 368 KYILQEQLKAIKKELGLEKDDKDAIEEKFRERIK 401 (442)
Q Consensus 368 ey~LrEQLK~IkkELG~e~dd~~~ei~elrekl~ 401 (442)
+-.|+.+++++|+||- .++.+|..|++.++
T Consensus 13 ~~~~~~~l~~Lr~eL~----~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 13 DDALLNTLAILQKELK----SKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3456778999999987 45667888887665
No 20
>4gmq_A Putative ribosome associated protein; ribosome binding, CO-translational chaperone, ribosome-bindi protein; 1.30A {Chaetomium thermophilum var}
Probab=23.16 E-value=1.3e+02 Score=24.58 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc
Q psy17017 374 QLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLG 421 (442)
Q Consensus 374 QLK~IkkELG~e~dd~~~ei~elrekl~~~~lpeev~k~~~kEL~RL~ 421 (442)
++..|..-|. ++++.+|..+|+.+.-..+|+.++.++.+||-
T Consensus 47 dvdli~~kld------~eeLa~lA~kl~~~~~a~avKav~~e~ak~lv 88 (103)
T 4gmq_A 47 DVDLVITKID------ADEIAALAGKLNGLTVADEIKNVWKEEVSRLV 88 (103)
T ss_dssp HHHHHHHHCC------HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcC------HHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 4556666655 34788999999988788999999999999984
No 21
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=22.98 E-value=59 Score=24.12 Aligned_cols=33 Identities=18% Similarity=0.093 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHhcCCHHHHH
Q psy17017 302 NPIYLADLGAALTGAEGTEQQAILEEMDIPKRL 334 (442)
Q Consensus 302 dp~~LaD~vAa~l~~~~~ekQ~lLe~~di~~RL 334 (442)
.-..++..+++.+-.++++.|.||+..+-..++
T Consensus 22 ~~~~m~kaI~avL~Fs~~e~q~il~~e~~r~~~ 54 (60)
T 1upt_B 22 ETKTMAKVITTVLKFPDDQTQKILEREDARLMS 54 (60)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHhccccc
Confidence 556788899999999999999999987766554
No 22
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.70 E-value=37 Score=26.95 Aligned_cols=10 Identities=60% Similarity=0.660 Sum_probs=5.4
Q ss_pred HHHHHHHhhc
Q psy17017 373 EQLKAIKKEL 382 (442)
Q Consensus 373 EQLK~IkkEL 382 (442)
|||+.+++.|
T Consensus 40 EqL~~LKkkl 49 (84)
T 1gmj_A 40 EQLAALKKHK 49 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566665544
No 23
>3v57_A Phycoerythrin alpha subunit; globin-like, photosynthesis; HET: PEB; 1.70A {Porphyridium purpureum} PDB: 3v58_A* 1eyx_A* 1b8d_A* 1lia_A* 2vjh_A* 3mwn_A*
Probab=20.67 E-value=1.3e+02 Score=26.50 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHc-CCCCCCchhH-HHHHHHHHhh
Q psy17017 393 EEKFRERIKDKKVPPPVMEVLNEELAKLG-FLESHSSEFN-VTRNYLDWLT 441 (442)
Q Consensus 393 i~elrekl~~~~lpeev~k~~~kEL~RL~-~m~~~S~E~~-ViRnYLD~l~ 441 (442)
+.-+++--...++|-...-.+.+.|+.-. .....|+|.. -++.|+||+.
T Consensus 110 l~glrE~y~~lgvp~~~~v~al~~lk~~~~~~~~~~~~a~~e~~~YfD~~I 160 (164)
T 3v57_A 110 IAGAREVYRTLNLPTSAYVASIAYTRDRLCVPRDMSAQAGVEFSAYLDYLI 160 (164)
T ss_dssp TTTHHHHHHHTTCCHHHHHHHHHHHHHHCCTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHH
Confidence 34578888899999999988999998643 3344566665 5799999986
No 24
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=20.38 E-value=43 Score=27.59 Aligned_cols=39 Identities=3% Similarity=0.222 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCCCCc
Q psy17017 390 DAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSS 428 (442)
Q Consensus 390 ~~ei~elrekl~~~~lpeev~k~~~kEL~RL~~m~~~S~ 428 (442)
.+.+...+=+|+.+.+|++++.-++.||+-.-.++|.++
T Consensus 34 ~slisSiEw~l~Smel~de~K~DieQqLnsid~Inp~~a 72 (110)
T 1lj2_A 34 GSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHA 72 (110)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHTTSCSSCHHHH
T ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHhccccccCcchh
Confidence 345667778899999999999999999998888888765
Done!