RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17017
(442 letters)
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme,
ATP-binding, DNA-binding, H nucleotide-binding, serine
protease, stress respo; 2.60A {Escherichia coli}
Length = 252
Score = 89.5 bits (223), Expect = 2e-20
Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 242 KPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNP-LYKEQLMILLQQENSPVV 300
+ L+ E + L++ I I +N + E L L +
Sbjct: 114 GEHFSAKAEYLE-SPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNS------I 166
Query: 301 DNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEE 360
D+P LAD AA + ++Q++LE D+ +RL +++++ E++L +++++I V++
Sbjct: 167 DDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKK 226
Query: 361 KVKQQHRKYILQEQLKAIKKELGLEKD 387
++++ R+Y L EQ+KAI+KELG E D
Sbjct: 227 QMEKSQREYYLNEQMKAIQKELG-EMD 252
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 60.2 bits (147), Expect = 6e-10
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 385 EKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLT 441
+K+ K + E+I++ +P V E +EL + + S S+E +V RNY+DWL
Sbjct: 2 DKEGKTGEVQTLTEKIEEAGMPDHVKETALKELNRYEKIPSSSAESSVIRNYIDWLV 58
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 1e-08
Identities = 59/444 (13%), Positives = 127/444 (28%), Gaps = 120/444 (27%)
Query: 92 IPLF-PKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDHKVSLVKDLSEVY---------- 140
+ +F F+ D D D+ K ++ + +DH + +S
Sbjct: 22 LSVFEDAFVDNFDCKDVQ--DMPKSILSKEE----IDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 141 --SVGSFVH-------------IREVLTLPDRLRLVLLAHRR-----IKIVAPYEDVDEG 180
V FV I+ P + + + R ++ A Y +V
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRL 134
Query: 181 PKVMNLK--FPGVKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGP-- 236
+ L+ ++ +VL++ G G K + + +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSG---KTWV-----ALDVCLSYKVQCKM-DFKIF 185
Query: 237 ----GPDEPKPVTMVEVVNLKH-------EKFKQSEEFKALMQEVIKTVRDIISMNPLYK 285
+ + L + + S K + + +R ++ + Y+
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-KSKPYE 244
Query: 286 EQLMIL-------------------LQQENSPVVD-------NPIYLADLGAALTGAEGT 319
L++L L V D I L LT E
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 320 EQQA-ILE--EMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQ-QHRKYILQEQL 375
L+ D+P R +L+ + + + I + + + + K++ ++L
Sbjct: 305 SLLLKYLDCRPQDLP-REVLTTNPRRLSI--------IAESIRDGLATWDNWKHVNCDKL 355
Query: 376 KAIKKELGLEKDDKDAIEEKFRE-RI--KDKKVPPPVMEVL------------NEELAKL 420
I E L + + F + +P ++ ++ +L K
Sbjct: 356 TTII-ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 421 GFLESHSSEFNVTRN--YLDWLTK 442
+E E ++ YL+ K
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVK 438
Score = 43.7 bits (102), Expect = 1e-04
Identities = 54/402 (13%), Positives = 114/402 (28%), Gaps = 121/402 (30%)
Query: 52 DDGTIKDIMPAEDIS------TKSNAIAAVAVPPVWPHLPLIAVSK-------IPLFPKF 98
+ A ++S T+ + H+ L S L K+
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 99 IKIVDIFDQP---------LIDLI----KRKVNLNQPYAGVDHKVSLVKDLSEVYSVGSF 145
+ D P + +I + + + V+ L+ + + S
Sbjct: 311 LDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-----KLTTI--IESS 362
Query: 146 VHIREVLTLPDRLR--LVLLAHRRIKIVAPYEDVDEGPKVMN-LKFPGVKDGFDVLLEET 202
+ VL P R L+ V P +++ + F +K V++ +
Sbjct: 363 L---NVLE-PAEYRKMFDRLS------VFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 203 NGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPGPDEPKPVTMVEVVNLKHEKFKQSEE 262
K SL ++ PK T + + ++ E + E
Sbjct: 412 ------HKYSLVEKQ-----------------------PKEST-ISIPSIYLELKVKLEN 441
Query: 263 FKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQ 322
AL + ++ Y P +D Y + +G L E
Sbjct: 442 EYALHRSIVDH----------YNIPKTFDSDDLIPPYLDQYFY-SHIGHHLKNIE----H 486
Query: 323 AILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQ--QHRKYI------LQEQ 374
E M + + + L L++++ + + ++Q ++ YI +
Sbjct: 487 P--ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 375 LKAIKK------------------ELGLEKDDKDAIEEKFRE 398
+ AI + L +D+ EE ++
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 38.7 bits (89), Expect = 0.004
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 29/100 (29%)
Query: 358 VEEKVKQQHRKY--ILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKV------PPPV 409
++ + + +Y IL A D KD +++ + + +++ V
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNF----DCKD-VQDMPKSILSKEEIDHIIMSKDAV 61
Query: 410 MEVL---------NEELAKLGFLESHSSEFNVTRNYLDWL 440
L EE+ + F+E + NY +L
Sbjct: 62 SGTLRLFWTLLSKQEEMVQK-FVEE-----VLRINY-KFL 94
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; 2.60A {Bacillus subtilis}
Length = 209
Score = 51.7 bits (125), Expect = 8e-08
Identities = 22/112 (19%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 242 KPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNP-LYKEQLMILLQQENSPVV 300
+ T V++ + E + E +ALM+ ++ I ++ + E + +
Sbjct: 105 EDYTSVDIQLIH-EDDSKDTEDEALMRTLLDHFDQYIKISKKISAETYAAVTD------I 157
Query: 301 DNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQ 352
+ P +AD+ A+ + ++Q ILE D+ RL + + E E+ ++++
Sbjct: 158 EEPGRMADIVASHLPLKLKDKQDILETADVKDRLNKVIDFINNEKEVLEIEK 209
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 6e-07
Identities = 48/319 (15%), Positives = 96/319 (30%), Gaps = 115/319 (36%)
Query: 8 NLGYS--NYYRDN--------GGIHSARICLNQCKANFKPFSSQGGSGDRGSKDDDGTIK 57
G+S + +N GG RI N F+ ++ K+ +
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 58 DIM---PAEDISTKSN---AIAAVAVPPVWPHLPLIAVSKIPLFPKFIKIVDIFDQPLID 111
+S A+ + A F+
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEK----------A---------------AFE----- 1745
Query: 112 LIKRK--VNLNQPYAGVDHKVSLVKDLSEVYSVGSFVHIREVLTLPDRLRLVLLAHRR-- 167
+K K + + +AG H SL E Y+ + + +V+++ + +V R
Sbjct: 1746 DLKSKGLIPADATFAG--H--SL----GE-YA--ALASLADVMSIESLVEVV---FYRGM 1791
Query: 168 -IKIVAPYEDVDEGPKVMNLKFPG-VKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPT 225
+++ P +++ M PG V F +E ++ V
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFS---QEA----------------LQYVVER 1832
Query: 226 ESEEAPPVPGPGPDEPKPVTMVEVVNLKHEKFKQ---SEEFKAL--MQEVIKTVR----D 276
+ + VE+VN E +Q + + +AL + V+ ++ D
Sbjct: 1833 VGKRTGWL-------------VEIVNYNVEN-QQYVAAGDLRALDTVTNVLNFIKLQKID 1878
Query: 277 II------SMNPLYKEQLM 289
II S+ + + L
Sbjct: 1879 IIELQKSLSLEEV-EGHLF 1896
Score = 46.6 bits (110), Expect = 2e-05
Identities = 44/299 (14%), Positives = 88/299 (29%), Gaps = 106/299 (35%)
Query: 134 KDLSEVYSVGSFVHIREVLTLPDRLRLVLLAHRRIKIVAPYEDVDEGPKVMNLKFPG--- 190
DL Y + ++V D + IV P + + F G
Sbjct: 1633 MDL---YK--TSKAAQDVWNRADNHFKDTYGFSILDIVI------NNPVNLTIHFGGEKG 1681
Query: 191 --VKDGFDVLLEETNGGGARKKRSLRKRNGVKPAVPTESEEAPPVPGPGPDE-------- 240
+++ + ++ ET G K + +E +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLK---------TEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 241 -PKPVTM----VEVVNLKHEKFKQSE---------EFKAL--------MQEVIKTVR--- 275
P M E LK + ++ E+ AL ++ +++ V
Sbjct: 1733 QPALTLMEKAAFED--LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 276 -----------------DIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTG--- 315
+I++NP ++ QE V + TG
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINP---GRVAASFSQEALQYVVERV------GKRTGWLV 1841
Query: 316 ------AEGTEQQAI----LEEMDIPKRLMLSLSLLK-KELELNKLQQKIGRE-VEEKV 362
E QQ + L +D + L+ +K +++++ +LQ+ + E VE +
Sbjct: 1842 EIVNYNVEN--QQYVAAGDLRALD---TVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 44.1 bits (104), Expect = 8e-05
Identities = 32/182 (17%), Positives = 73/182 (40%), Gaps = 16/182 (8%)
Query: 248 EVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLA 307
+++ ++ + K ++E K L + V ++ K L L + S + + + L
Sbjct: 991 DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN-LTKLKNKHESMISELEVRLK 1049
Query: 308 DLGAALTGAEGTEQQAILEEMDIPKRLM--------LSLSLLKKELELNKLQQKIGREVE 359
+ E +++ E D+ +++ L L KKE EL ++ E
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109
Query: 360 EKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAK 419
+K + L+ + ++++L EK ++ E++ R+ ++ +E L EL
Sbjct: 1110 QKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE-------LEALKTELED 1162
Query: 420 LG 421
Sbjct: 1163 TL 1164
Score = 37.5 bits (87), Expect = 0.009
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 14/156 (8%)
Query: 251 NLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLG 310
++ E + ++ + QE+ K R + + EQ+ L Q +A+L
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ-----------IAELK 1087
Query: 311 AALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELE--LNKLQQKIGREVEEKVKQQHRK 368
A L E E QA L ++ + +ELE ++ LQ+ + E + K + +K
Sbjct: 1088 AQLAKKE-EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK 1146
Query: 369 YILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKK 404
L E+L+A+K EL D +E KD
Sbjct: 1147 RDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 35.2 bits (81), Expect = 0.049
Identities = 25/166 (15%), Positives = 64/166 (38%), Gaps = 13/166 (7%)
Query: 255 EKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALT 314
+K Q E K L+QE ++ ++ + + +L Q+ L ++ A +
Sbjct: 885 QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEE-------ILHEMEARIE 937
Query: 315 GAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQ 374
E Q + E K++ + L+++LE + + + EKV + +++
Sbjct: 938 EEE-ERSQQLQAEK---KKMQQQMLDLEEQLE--EEEAARQKLQLEKVTADGKIKKMEDD 991
Query: 375 LKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKL 420
+ ++ + ++ +EE+ + + + L + K
Sbjct: 992 ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 43.2 bits (102), Expect = 1e-04
Identities = 25/174 (14%), Positives = 63/174 (36%), Gaps = 5/174 (2%)
Query: 252 LKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGA 311
+ ++++ + +Q +++ + +E I++Q+ + Y L A
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889
Query: 312 ALT---GAEGTEQQAILEEMDIPKRLMLSLSLLKKELE--LNKLQQKIGREVEEKVKQQH 366
+ + L+++ I R + L LE + +LQ+KI + +E
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949
Query: 367 RKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKL 420
+ L+ ++L + + EE+ + + L +EL +
Sbjct: 950 KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003
Score = 40.5 bits (95), Expect = 0.001
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 321 QQAILEEMDIPKRLMLSLSLLKKEL-----ELNKLQQKIGREVEEKVKQQHRKYILQEQL 375
Q+ I E+ K L+ ++ L+ +L +++ EE +R LQE++
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 376 KAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAK 419
++KEL + +K IEE + + E L EL +
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHE-------TEQLVSELKE 1030
Score = 31.2 bits (71), Expect = 0.76
Identities = 22/159 (13%), Positives = 61/159 (38%), Gaps = 20/159 (12%)
Query: 248 EVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLA 307
+++ L+ + +Q++E+K+L++++ + + + L E
Sbjct: 929 KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE---------- 978
Query: 308 DLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELE--LNKLQQKIGREVEEKVKQQ 365
++ EE+ ++ + KK +E +K + + + V E +Q
Sbjct: 979 ------AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032
Query: 366 HRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKK 404
+ E+ + ++ K+ + +E+K E K +
Sbjct: 1033 TL--LKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE 1069
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.002
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 24/83 (28%)
Query: 320 EQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIK 379
EQ+ L+E+D + E E + +K ++EE +++ EQ++ K
Sbjct: 93 EQRKRLQELDAASK--------VMEQEWREKAKK---DLEE----WNQRQ--SEQVEKNK 135
Query: 380 KELGLEKDDKDAIEEKFRERIKD 402
++ A ++ F ++
Sbjct: 136 IN------NRIA-DKAFYQQPDA 151
Score = 29.7 bits (66), Expect = 1.5
Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 356 REVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNE 415
+ E +++ R +EQ K +++ K + EK ++ +++ + +E
Sbjct: 81 TQEPESIRKW-R----EEQRKRLQELDAASKVMEQEWREKAKKDLEE------WNQRQSE 129
Query: 416 ELAK 419
++ K
Sbjct: 130 QVEK 133
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 33.7 bits (78), Expect = 0.14
Identities = 29/181 (16%), Positives = 68/181 (37%), Gaps = 24/181 (13%)
Query: 246 MVEVVNLKHEKFKQSEEFKALMQEVIKTVRDI-ISMNPLYKEQLMILLQQENSPVVDNPI 304
+E + +++E +++ + VR + +++ + L+ E +PV +N
Sbjct: 701 ALEAWPEPGGRDEEAERAFEALKQAVTAVRALKAEAGLPPAQEVRVYLEGETAPVEENLE 760
Query: 305 YLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQ 364
L A E + + + R+ L LL E + ++++
Sbjct: 761 VFRFLSRADLLPERPAKALVKAMPRVTARMPLE-GLLDVEEWRRRQEKRLKE-------- 811
Query: 365 QHRKYILQEQLKAIKKELG----LEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKL 420
L + +++L EK K+ +E + R+K+ E + E L+++
Sbjct: 812 ------LLALAERSQRKLASPGFREKAPKEVVEAE-EARLKENLE---QAERIREALSQI 861
Query: 421 G 421
G
Sbjct: 862 G 862
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.60A
{Bordetella parapertussis} SCOP: b.122.1.10
Length = 210
Score = 31.0 bits (70), Expect = 0.51
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 16/104 (15%)
Query: 90 SKIPLFPKFIKIV---------DIFDQPLIDLIKRKVNLNQPYAGV----DHKVSLVKDL 136
++IPLFP + +F+ +D+++R + + V +V
Sbjct: 2 AEIPLFP--LSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGR 59
Query: 137 SEVYSVGSFVHIREVLTLPD-RLRLVLLAHRRIKIVAPYEDVDE 179
+ G+ I L L R ++ A +
Sbjct: 60 EVLARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYG 103
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 31.9 bits (72), Expect = 0.55
Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 28/147 (19%)
Query: 261 EEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTE 320
E + ++ V++ +++II + + + IY A+ +
Sbjct: 833 EAEEEFIRSVMEDIKEIIEVAKIENAKRAY-------------IYTAE------DWKWKV 873
Query: 321 QQAILEEMD---IPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKA 377
+ + E+ D + LM + K E+ K+ QK+ +E VK+ + + L+E +
Sbjct: 874 AEVVSEKRDFKSSMEELMKDSEIRKHGKEVAKIVQKLIKERTFDVKRINEEKALREAKEF 933
Query: 378 IKKELGLEKDDKDAIEEKFRERIKDKK 404
++KELG+E I E KK
Sbjct: 934 MEKELGIE------IIINPTEDKGGKK 954
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 30.2 bits (68), Expect = 0.58
Identities = 10/64 (15%), Positives = 32/64 (50%)
Query: 340 LLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRER 399
+ + E +L++ + + + + + + L ++ ++ ++ E+D+ EE+ +
Sbjct: 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL 74
Query: 400 IKDK 403
IK+K
Sbjct: 75 IKNK 78
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein,
developmental protein, structural protei
phosphorylation, transport, microtubule; 2.10A {Homo
sapiens}
Length = 111
Score = 29.1 bits (65), Expect = 1.1
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 342 KKELELNKLQQKIGREVEE-KVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRE 398
++ +L Q++ EVE K K +H+ +Q+ ++ +L + K+ + + RE
Sbjct: 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE 60
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 28.9 bits (65), Expect = 3.8
Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 14/162 (8%)
Query: 246 MVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIY 305
V + + + +++ + + + + ++++ +LLQ+ N + +
Sbjct: 834 REPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENW 893
Query: 306 LADLGAAL----TGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEK 361
L TG T QA L+ ++ SL + +L + ++
Sbjct: 894 ATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSL-EGQSNSDLLSILAQLTELNYNG 952
Query: 362 VKQ---------QHRKYILQEQLKAIKKELGLEKDDKDAIEE 394
V + + ++ + K L E + IE+
Sbjct: 953 VPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 28.7 bits (63), Expect = 4.6
Identities = 26/185 (14%), Positives = 56/185 (30%), Gaps = 6/185 (3%)
Query: 207 ARKKRSLRKRNGVKPAVPTESEEAPPVPGPGPDEPKPVTMVEVVNLKHEKFKQSEEFKAL 266
R + +L + + + + + + + L+ K ++ E + L
Sbjct: 352 ERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQA-MMQRLEETKNMEAAERQKL 410
Query: 267 MQEVIKTVRDIISMN---PLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQA 323
E+ ++ + L + L ++ A L AA T +
Sbjct: 411 EDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAER 470
Query: 324 ILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELG 383
+ D +L + V ++ R L QLKA+K++L
Sbjct: 471 ADTDPDHDNASDAGSESGGGDLARGP--DDLVDPVADRRTLAERNERLHNQLKALKQDLA 528
Query: 384 LEKDD 388
D+
Sbjct: 529 RSCDE 533
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein;
1.65A {Escherichia coli} PDB: 2p6j_A
Length = 52
Score = 25.9 bits (56), Expect = 4.9
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 357 EVEEKVKQQHRKY--ILQEQLKAIKKELGLEKDDKDAIEEKFRE 398
EVE K+K+ R++ I QE L ++LGL ++ AIE+ FRE
Sbjct: 7 EVERKLKEFVRRHQEITQETLHEYAQKLGL---NQQAIEQFFRE 47
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.137.5.1
Length = 90
Score = 26.9 bits (59), Expect = 5.0
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 359 EEKVKQQHRKYILQEQLKAIKKELGLEKDD 388
EE+ + + +Q+ LKA+ EL +D+
Sbjct: 19 EERTTEAEKNERVQKHLKALTSELANARDE 48
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 27.8 bits (61), Expect = 5.6
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 306 LADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKEL-----ELNKLQQKIGREVEE 360
L ++ + + E + + L S S K+ L ++ G + E
Sbjct: 32 LRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEM 91
Query: 361 KVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDK 403
Q R LQE++K +K L + ++ ++ K+K
Sbjct: 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 28.1 bits (63), Expect = 6.4
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 14/128 (10%)
Query: 274 VRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKR 333
V I + +P E + + S TE +
Sbjct: 154 VEQIAAQSP--VELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIH---- 207
Query: 334 LMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIE 393
LK G + + R ++ + + +K E EK +
Sbjct: 208 -----GELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAE---EKKILNQFL 259
Query: 394 EKFRERIK 401
+ ++R +
Sbjct: 260 KIKKKRKE 267
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 28.5 bits (64), Expect = 6.4
Identities = 23/169 (13%), Positives = 57/169 (33%), Gaps = 19/169 (11%)
Query: 248 EVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLA 307
V + + + +++ + + + + ++++ +LLQ+ N + +
Sbjct: 844 PFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWAT 903
Query: 308 D----LGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVK 363
LG+ TG T QA L+ ++ SL + +L + ++ V
Sbjct: 904 TKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSL-EGQSNSDLLSILAQLTELNYNGVP 962
Query: 364 QQHRKYILQEQLK--------AIKKELGLEKDDKDAIEEKFRERIKDKK 404
+ L E+ +K K+ A E+ ++
Sbjct: 963 E------LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHH 1005
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.2 bits (62), Expect = 7.0
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 331 PKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKD 390
+ L +K L KL Q +++E+K K + +Q K + L +
Sbjct: 355 AELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAG 414
Query: 391 AIEEKFRERIKDKK 404
+ +R K+KK
Sbjct: 415 GSQTL--KRDKEKK 426
Score = 27.8 bits (61), Expect = 7.3
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 312 ALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYIL 371
+ + L+E KR L KKE E+ ++ + +E E ++K+ ++ L
Sbjct: 307 GFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE--L 364
Query: 372 QEQLKAIKKELGLEK---DDKDAIEEKFRERIKDKKV 405
E+ +KK EK +DK + K +K
Sbjct: 365 HEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKT 401
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease,
hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus
fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Length = 258
Score = 27.6 bits (62), Expect = 8.2
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 19/74 (25%)
Query: 307 ADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQH 366
AD+ A G + L +MD ++ +K+ +EL K +
Sbjct: 185 ADMPFAFLIRNGKIESIALLQMDGR----MTRDEVKQAIELAK---------------KG 225
Query: 367 RKYILQEQLKAIKK 380
I + Q +AI +
Sbjct: 226 ALQIYEMQREAILR 239
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast
structural genomics consortium, PSI-1, protein structure
initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Length = 85
Score = 25.8 bits (57), Expect = 9.0
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 335 MLSLSLLKKELELNKLQQKIGREVEEKVKQQ--HRKYI------LQEQLKAIKKELGLEK 386
M+S + + + EL + EEK +QQ ++Y+ ++ LK++K ++
Sbjct: 1 MISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKNTLKSVKI---IDP 57
Query: 387 DDKDAIEEKFRERIKDKK 404
+ D EK + ++ K
Sbjct: 58 EGNDVTPEKLKREQRNNK 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.136 0.384
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,938,408
Number of extensions: 449236
Number of successful extensions: 1117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1095
Number of HSP's successfully gapped: 75
Length of query: 442
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 345
Effective length of database: 3,993,456
Effective search space: 1377742320
Effective search space used: 1377742320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.2 bits)