RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17017
         (442 letters)



>d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon),
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 110

 Score = 34.3 bits (78), Expect = 0.007
 Identities = 14/91 (15%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 84  LPLIAVSKIPLFPKFIKIVDIFDQPLIDLIKRKVNLNQPYAGVDHKVSLVKD--LSEVYS 141
           +P++ +  + ++P  +  + +  +  I  ++  ++ ++    V  K +   +  ++++++
Sbjct: 4   IPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFT 63

Query: 142 VGSFVHIREVLTLPD-RLRLVLLAHRRIKIV 171
           VG+   I ++L LPD  +++++   +R +I 
Sbjct: 64  VGTVASILQMLKLPDGTVKVLVEGLQRARIS 94


>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347
           {Bordetella parapertussis [TaxId: 519]}
          Length = 197

 Score = 34.9 bits (79), Expect = 0.011
 Identities = 11/104 (10%), Positives = 29/104 (27%), Gaps = 6/104 (5%)

Query: 238 PDEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRDIISMNPLYKEQLMILLQQENS 297
             +    T            +   E       + + +  +           M    +   
Sbjct: 98  QGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFR--- 154

Query: 298 PVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLL 341
             +D+  ++AD  A +      ++  +L  +    RL    ++L
Sbjct: 155 --LDDCGWVADRWAEMLSLPPADKARLL-LLPPLDRLREIDAVL 195


>d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 90

 Score = 30.2 bits (68), Expect = 0.10
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 356 REVEEKVKQQHRKYILQEQLKAIKKELGLEKDD 388
           R  EE+  +  +   +Q+ LKA+  EL   +D+
Sbjct: 16  RSEEERTTEAEKNERVQKHLKALTSELANARDE 48


>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
           protein 1 (GBP1), C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 300

 Score = 30.9 bits (69), Expect = 0.27
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 320 EQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYI--LQEQLKA 377
               +L EM      M+       +  L +L +K+  +  + +K+Q R     LQEQ + 
Sbjct: 218 ASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 277

Query: 378 IKKELGLEKDDKDAIEEKFRERI 400
           +K+    E        +  + ++
Sbjct: 278 LKEGFQKESRIMKNEIQDLQTKM 300


>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 335

 Score = 30.8 bits (69), Expect = 0.31
 Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 4/42 (9%)

Query: 366 HRKYILQEQLKAIKKELGLEKDDK----DAIEEKFRERIKDK 403
           H   +  + +K +K + G   D        + + +++ I   
Sbjct: 261 HGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKP 302


>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
           {Leishmania mexicana mexicana [TaxId: 44270]}
          Length = 336

 Score = 29.8 bits (66), Expect = 0.70
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 366 HRKYILQEQLKAIKKELGLEKDDK----DAIEEKFRERIK 401
           H   + +E +  IK + G +   K    D +   FR  I 
Sbjct: 261 HGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHID 300


>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 107

 Score = 26.0 bits (56), Expect = 4.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)

Query: 228 EEAPPVPGPGPDEPKPVTMVEV 249
           E AP   GP P  P+ V    V
Sbjct: 1   EHAPATTGPLPSAPRDVVASLV 22


>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
           (Zea mays) [TaxId: 4577]}
          Length = 338

 Score = 27.1 bits (59), Expect = 5.2
 Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 355 GREVEEKVKQQHRKYILQEQLKAIKKELGLEKDD---KDAIEEKFRERIK 401
           G   +      H   +  ++++A ++ LG   D     + ++  +     
Sbjct: 255 GSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTP 304


>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha,
           eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId:
           2287]}
          Length = 91

 Score = 25.0 bits (55), Expect = 8.2
 Identities = 3/26 (11%), Positives = 12/26 (46%)

Query: 378 IKKELGLEKDDKDAIEEKFRERIKDK 403
           I  + G+ +     + E+  +  +++
Sbjct: 66  ILIDAGVPEIWVKPLLEEASKHAEER 91


>d1rfma_ c.122.1.1 (A:) L-sulfolactate dehydrogenase {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 344

 Score = 26.2 bits (57), Expect = 9.2
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 222 AVPTESEEAPPVPGPGPDEPKPVTMVEVVNLKHEKFKQSEEFKALMQEVIKTVRD 276
           +    +E    V G    E +       + +  E F   EEFK  + E++  +++
Sbjct: 237 SAIGGAEVGTKVKGTANPEERCTKGDLFIAINPEFFMGKEEFKRKVDELLDEIKN 291


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,678,199
Number of extensions: 84701
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 34
Length of query: 442
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 354
Effective length of database: 1,199,356
Effective search space: 424572024
Effective search space used: 424572024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.1 bits)