BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1702
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99489|OXDD_HUMAN D-aspartate oxidase OS=Homo sapiens GN=DDO PE=2 SV=1
Length = 341
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 5/139 (3%)
Query: 29 FKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITN 88
K +GG + + I EL ++ + NC+GLG+R L D + PVRGQ ++++AP + +
Sbjct: 154 IKGSGGWTLTRRIEDLWELHPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQAPWVEH 213
Query: 89 FYKNEYD-TYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGV-GACGG 146
F ++ TYI P S VTLGGT+ G N ++ ++ IL+R L P + GAC
Sbjct: 214 FIRDGSGLTYIYPG--TSHVTLGGTRQKGDWNLSPDAENSREILSRCCALEPSLHGACNI 271
Query: 147 GQCWVGLRPHRYRVRVECE 165
+ VGLRP+R VR++ E
Sbjct: 272 REK-VGLRPYRPGVRLQTE 289
>sp|A3KCL7|OXDD_PIG D-aspartate oxidase OS=Sus scrofa GN=DDO PE=2 SV=1
Length = 341
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 5/138 (3%)
Query: 30 KTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNF 89
K +GG V+ + + EL ++ + NC+GLG++ L DM + PVRGQ ++++AP + +F
Sbjct: 155 KGSGGLVLTRRVEDLWELHPSFDIVVNCSGLGSKQLVGDMDIFPVRGQVLKVQAPWVKHF 214
Query: 90 YKNEYD-TYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGV-GACGGG 147
++ TYI P + VTLGGT+ G N + ++ IL+R L P + GAC
Sbjct: 215 IRDGSGLTYIYPGLAN--VTLGGTRQKGDWNLSPNAEISKQILSRCCALEPSLRGACDIR 272
Query: 148 QCWVGLRPHRYRVRVECE 165
+ VGLRP R VR+E E
Sbjct: 273 EK-VGLRPSRPGVRLEKE 289
>sp|P31228|OXDD_BOVIN D-aspartate oxidase OS=Bos taurus GN=DDO PE=1 SV=2
Length = 341
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 30 KTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNF 89
K GG ++ + I EL ++ + NC+GLG+R L D + PVRGQ ++++AP + +F
Sbjct: 155 KGNGGLILTRRIEDLWELHPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLKVQAPWVKHF 214
Query: 90 YKNEYD-TYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQ 148
++ TYI P S VTLGGT+ G N ++ ++ IL+R L P + +
Sbjct: 215 IRDSSGLTYIYPG--VSNVTLGGTRQKGDWNLSPDAEISKEILSRCCALEPSLRGAYDLR 272
Query: 149 CWVGLRPHRYRVRVECE 165
VGLRP R VR+E E
Sbjct: 273 EKVGLRPTRPSVRLEKE 289
>sp|Q922Z0|OXDD_MOUSE D-aspartate oxidase OS=Mus musculus GN=Ddo PE=2 SV=1
Length = 341
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 29 FKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITN 88
K +GG ++ + I EL ++ + NC+GLG+R L D + PVRGQ ++ +AP + +
Sbjct: 154 IKGSGGLLLTRRIEDLWELQPSFDIVVNCSGLGSRRLVGDPMISPVRGQVLQARAPWVKH 213
Query: 89 FYKNEYD-TYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGG 147
F ++ TY+ P S VTLGGT+ G NR ++ + I +R L P +
Sbjct: 214 FIRDGGGLTYVYPGM--SYVTLGGTRQKGDWNRSPDAELSREIFSRCCTLEPSLHRAYDI 271
Query: 148 QCWVGLRPHRYRVRVECE 165
+ VGLRP R VR++ E
Sbjct: 272 KEKVGLRPSRPGVRLQKE 289
>sp|A8XJ44|OXDA2_CAEBR D-amino-acid oxidase 2 OS=Caenorhabditis briggsae GN=CBG13882 PE=3
SV=1
Length = 329
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 6 YLKPVLPVYKRMSEEELAVYTVLFKTAGGKVIEKYISSFSELGSEY---NTIFNCTGLGA 62
YL+P P K S++ F GGK+ I ++ E+ + I NCTG+GA
Sbjct: 136 YLEPT-PYIKWESDK--------FLKNGGKIKNSKIQKIEDVEKEFGLFDVILNCTGIGA 186
Query: 63 RTLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCV 122
R L D V P RGQ +++K P + +F+ ++ Y + N D+ +TLGGT + +R +
Sbjct: 187 RHLIGDNEVFPTRGQILKVKCPSVKHFFIDD-QFYALLN--DTTITLGGTADRHQWDRTI 243
Query: 123 ESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYRVRVECEQTPGGKV 172
+E I + +P + + V LRP R VR+E E P KV
Sbjct: 244 NPKISEKIFQENCKNIPSLRSAQVISSHVDLRPSRVTVRLEAE--PDSKV 291
>sp|Q9Y7N4|OXDA_SCHPO D-amino-acid oxidase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=dao1 PE=3 SV=1
Length = 348
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 76/174 (43%), Gaps = 21/174 (12%)
Query: 40 YISSFSELGSEYNTIFNCTGLGARTL--CNDMHVIPVRGQTIRIKAPHITN---FYKNEY 94
+I E E + +FNCTGL A L D V P RG + +KAPH+T
Sbjct: 170 HIKETVEETPEASVVFNCTGLWASKLGGVEDPDVYPTRGHVVLVKAPHVTETRILNGKNS 229
Query: 95 DTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLP----GVGACGG---G 147
DTYIIP + V GG G+ +R + DT IL RT L+P G G G
Sbjct: 230 DTYIIPRPLNGGVICGGFMQPGNWDREIHPEDTLDILKRTSALMPELFHGKGPEGAEIIQ 289
Query: 148 QCWVGLRPHRY-RVRVECEQTPGGKV-------NAGVGVVVGRKKRLTDLLLTF 193
+C VG RP R RVE + PG V +G G G L ++L
Sbjct: 290 EC-VGFRPSRKGGARVELDVVPGTSVPLVHDYGASGTGYQAGYGMALDSVMLAL 342
>sp|Q95XG9|OXDA2_CAEEL D-amino-acid oxidase 2 OS=Caenorhabditis elegans GN=Y69A2AR.5 PE=1
SV=2
Length = 322
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 29 FKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITN 88
F GGK ++ I + ++ Y+ NCTGLG+R L D V P RGQ +++ P + +
Sbjct: 148 FLKNGGKFKKQKIENIDDVARSYDVTVNCTGLGSRALIGDKEVYPTRGQILKVSCPRVKH 207
Query: 89 FYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQ 148
F+ ++ Y + N DS +TLGGT + + S ++ IL +P +
Sbjct: 208 FFIDD-KYYALLN--DSTITLGGTFEAHQWDLTINSELSQKILKENIHNIPSLRTAQILS 264
Query: 149 CWVGLRPHRYRVRVECE 165
V +RP R VR++ E
Sbjct: 265 SHVDMRPSRGTVRLQAE 281
>sp|Q556W1|OXDD_DICDI D-aspartate oxidase OS=Dictyostelium discoideum GN=ddo-1 PE=3 SV=1
Length = 346
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 29 FKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITN 88
FK+ GG + ++++ E +++ + NCTGLG+R L ND + P RGQ I IK +
Sbjct: 158 FKSLGGIIEQRHLVDIREAFVDHDVVVNCTGLGSRELFNDRTIYPGRGQIIVIKNSTDRS 217
Query: 89 FYKNE-YDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGA---- 143
E + Y+IP +++ LGGT N DTE IL R + P
Sbjct: 218 IMDEEDHIAYVIPRLTNTV--LGGTNQEHDYNTNPTKKDTEEILKRVAMISPRFAKNRIE 275
Query: 144 CGGGQCWVGLRPHRYRVRVECEQTPGG 170
G + VGLRP R+ +R+E E GG
Sbjct: 276 IQGVK--VGLRPARHEIRLENEFFEGG 300
>sp|A8WXM1|OXDD1_CAEBR D-aspartate oxidase 1 OS=Caenorhabditis briggsae GN=CBG04460 PE=3
SV=1
Length = 331
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 51 YNTIFNCTGL-GARTLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTL 109
Y+ I NC GL G + +D P+RG + + AP +F ++ T+ IP ++ V +
Sbjct: 174 YDVIVNCAGLYGGKLAGDDDQCYPIRGVILEVDAPWHKHFNYRDFTTFTIPK--ENSVVI 231
Query: 110 GGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYRVRVECEQ 166
G T+ + + D IL+R EL PG+ + W LRP R VR+E +Q
Sbjct: 232 GSTKQDNRWDLEITDEDRNDILSRYIELHPGMREPKILKEWSALRPGRKHVRIESQQ 288
>sp|P00371|OXDA_PIG D-amino-acid oxidase OS=Sus scrofa GN=DAO PE=1 SV=2
Length = 347
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 33 GGKVIEKYISSFSELG-SEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFY- 90
G K + + SF E+ + I NCTG+ A L D + P RGQ I++ AP + NF
Sbjct: 156 GVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFII 215
Query: 91 -----KNEYDT-YIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGAC 144
+ Y++ YIIP G + VTLGGT G+ N D +I L P +
Sbjct: 216 THDLERGIYNSPYIIP-GLQA-VTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDA 273
Query: 145 GGGQCWVGLRPHRYRVRVECEQTPGGKVNAGV 176
+ G RP R +VR+E EQ G N V
Sbjct: 274 KIVGEYTGFRPVRPQVRLEREQLRFGSSNTEV 305
>sp|O01739|OXDA1_CAEEL Putative D-amino-acid oxidase 1 OS=Caenorhabditis elegans
GN=F20H11.5 PE=1 SV=1
Length = 383
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 31 TAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDM--HVIPVRGQTIRIKAPHITN 88
T G + ++ I + ELG+E++ + N GL L D ++ P+RG IR+ AP +
Sbjct: 180 TKGVRFTQRRIGNLEELGAEFDVVVNSAGLLGGVLAGDDAGNMKPIRGVLIRVDAPWQKH 239
Query: 89 FYKNEYDTYIIPNGFDSLVTLGGTQN---FGHVNRCVESTDTESILARTEELLPGVGACG 145
F ++ T IP V +G + FG N V S D + I +R L P
Sbjct: 240 FLYRDFSTITIP--VIDHVYMGTVKQEGAFGPNN--VTSADIQDITSRYVALQPSFKRVH 295
Query: 146 GGQCWVGLRPHRYRVRVECE--QTPGGK 171
+VG RP R +VRVE + +T G K
Sbjct: 296 MLSSFVGYRPGRKQVRVEKQIRETNGSK 323
>sp|A2V9Y8|OXDA_MACFA D-amino-acid oxidase OS=Macaca fascicularis GN=DAO PE=2 SV=1
Length = 347
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 33 GGKVIEKYISSFSELGSE-YNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYK 91
G K ++ + SF E+ E + I NCTG+ A L D + P RGQ I++ AP I +F
Sbjct: 156 GVKFFQRKVESFEEVAREGADVIVNCTGVWAGVLQPDPLLQPGRGQIIKVDAPWIKHFIL 215
Query: 92 NE------YDT-YIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGAC 144
Y++ YIIP VTLGG G+ N D +I L P +
Sbjct: 216 THEPESGIYNSPYIIPG--TQTVTLGGIFQLGNWNELNNIQDHNTIWEGCCRLEPTLKNA 273
Query: 145 GGGQCWVGLRPHRYRVRVECEQTPGGKVNAGV 176
G RP R ++R+E EQ G N V
Sbjct: 274 RIVDERTGFRPVRPKIRLEREQLRVGPSNTEV 305
>sp|P22942|OXDA_RABIT D-amino-acid oxidase OS=Oryctolagus cuniculus GN=DAO PE=2 SV=1
Length = 347
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 33 GGKVIEKYISSFSEL-GSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNF-- 89
G K+ ++ + SF E+ G + I NCTG+ A L D + P RGQ I++ AP + +F
Sbjct: 156 GVKLFQRKVESFDEVAGGGVDVIVNCTGVWASALQPDPLLQPGRGQIIKVDAPWVKHFII 215
Query: 90 --------YKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGV 141
YK+ YIIP VTLGG G+ + + D +I L P +
Sbjct: 216 THDPESGIYKSP---YIIPG--VHAVTLGGIFQMGNWSEGNSTDDHNTIWKGCCSLEPTL 270
Query: 142 GACGGGQCWVGLRPHRYRVRVECEQTPGG 170
W G RP R ++R+ EQ G
Sbjct: 271 KDARIVGEWTGFRPVRPQIRLGREQLSAG 299
>sp|Q19564|OXDD1_CAEEL D-aspartate oxidase 1 OS=Caenorhabditis elegans GN=F18E3.7 PE=1
SV=1
Length = 334
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 51 YNTIFNCTGL-GARTLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTL 109
Y+ I NC GL G + +D P+RG + + AP +F ++ T+ IP + V +
Sbjct: 177 YDVIVNCAGLYGGKLAGDDDTCYPIRGVILEVDAPWHKHFNYRDFTTFTIPK--EHSVVV 234
Query: 110 GGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYRVRVECEQ 166
G T+ + + D IL R L PG+ + W LRP R VR+E ++
Sbjct: 235 GSTKQDNRWDLEITDEDRNDILKRYIALHPGMREPKIIKEWSALRPGRKHVRIEAQK 291
>sp|P18894|OXDA_MOUSE D-amino-acid oxidase OS=Mus musculus GN=Dao PE=1 SV=3
Length = 345
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Query: 33 GGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYKN 92
G K+I + + S E+ + I NCTG+ A L D + P RGQ I+++AP I +F
Sbjct: 155 GVKLIHRKVESLEEVARGVDVIINCTGVWAGALQADASLQPGRGQIIQVEAPWIKHFILT 214
Query: 93 E------YDT-YIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACG 145
Y++ YIIP VTLGG G+ + D +I +L P +
Sbjct: 215 HDPSLGIYNSPYIIPG--SKTVTLGGIFQLGNWSGLNSVRDHNTIWKSCCKLEPTLKNAR 272
Query: 146 GGQCWVGLRPHRYRVRVECEQTPGGKVNAGV 176
G RP R +VR+E E G +A V
Sbjct: 273 IVGELTGFRPVRPQVRLEREWLRHGSSSAEV 303
>sp|O45307|OXDD2_CAEEL D-aspartate oxidase 2 OS=Caenorhabditis elegans GN=C47A10.5 PE=1
SV=2
Length = 334
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
Query: 30 KTAGGKVIEKYISSFSELGSE-YNTIFNCTGLGARTLC-NDMHVIPVRGQTIRIKAPHIT 87
+ G + + + + EL +E Y+ I NC GL TL +D V P+RG + ++A
Sbjct: 152 QARGVEFLHRKVRDLEELANEGYDVIVNCAGLSGGTLAGDDDSVYPIRGVVLDVEAHWHK 211
Query: 88 NFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGG 147
+F ++ T+ IP ++ V +G + + + D + IL R L P +
Sbjct: 212 HFNYKDFITFTIPK--ENSVVIGSVKQENRWDLEITDVDRKDILERYVALHPAMREPKIL 269
Query: 148 QCWVGLRPHRYRVRVE 163
W GLRP R +R+E
Sbjct: 270 GEWSGLRPARKTIRIE 285
>sp|O35078|OXDA_RAT D-amino-acid oxidase OS=Rattus norvegicus GN=Dao PE=2 SV=1
Length = 346
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
Query: 22 LAVYTVLFKTAGGKVIEKYISSFSEL-GSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIR 80
L+ T G K I + ++SF E+ + I NCTG+ A L D + P RGQ I+
Sbjct: 144 LSWLTERLTERGVKFIHRKVASFEEVVRGGVDVIINCTGVWAGALQADASLQPGRGQIIQ 203
Query: 81 IKAPHITNFYKNE------YDT-YIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILAR 133
++AP I +F Y++ YIIP VTLGG G+ + D +I
Sbjct: 204 VEAPWIKHFILTHDPSLGIYNSPYIIPG--SKTVTLGGVFQLGNWSELNSVHDHNTIWKS 261
Query: 134 TEELLPGVGACGGGQCWVGLRPHRYRVRVECEQTPGGKVNAGV 176
+L P + G RP R +VR+E E+ G +A V
Sbjct: 262 CCQLEPTLKNARIMGELTGFRPVRPQVRLERERLRFGSSSAEV 304
>sp|Q9Z1M5|OXDA_CAVPO D-amino-acid oxidase OS=Cavia porcellus GN=DAO PE=2 SV=1
Length = 347
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 72/166 (43%), Gaps = 16/166 (9%)
Query: 22 LAVYTVLFKTAGGKVIEKYISSFSELG-SEYNTIFNCTGLGARTLCNDMHVIPVRGQTIR 80
LA T G K ++ + S E+ + I NCTG+ A L D + P RGQ I+
Sbjct: 145 LAWLTERLTERGVKFFQRKVESLEEVARGGADVIINCTGVWAGALQPDPLLQPGRGQIIK 204
Query: 81 IKAPHITNF----------YKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESI 130
+ AP I +F YK+ YIIP G VTLGG G+ N + D +I
Sbjct: 205 VNAPWIKHFILTHDPERGIYKS---PYIIP-GIQE-VTLGGIFQLGNWNEINSTQDHNTI 259
Query: 131 LARTEELLPGVGACGGGQCWVGLRPHRYRVRVECEQTPGGKVNAGV 176
L P + + G RP R ++R+E EQ G N V
Sbjct: 260 WKGCCSLEPTLRNARIVGEYTGFRPVRPQLRLEREQLRVGSANTEV 305
>sp|Q9Z302|OXDA_CRIGR D-amino-acid oxidase OS=Cricetulus griseus GN=DAO PE=2 SV=1
Length = 346
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 33 GGKVIEKYISSFSELG-SEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYK 91
G K+ + + SF E+ + I NCTG+ A L D + P RGQ I+++AP + +F
Sbjct: 155 GVKLFHRKVESFEEVARGGADVIINCTGVWAGALQADTSLQPGRGQIIQVEAPWMKHFIL 214
Query: 92 NE------YDT-YIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGAC 144
Y++ YIIP VTLGG G+ N D +I +L P +
Sbjct: 215 THDPRLGIYNSPYIIPG--SKTVTLGGVFQLGNWNELNSVHDHNTIWKSCCKLEPTLKNA 272
Query: 145 GGGQCWVGLRPHRYRVRVECEQ 166
G RP R++VR++ +Q
Sbjct: 273 KIVGELTGFRPVRHQVRLKKKQ 294
>sp|O07727|DAO_MYCTU Probable D-amino-acid oxidase OS=Mycobacterium tuberculosis GN=aao
PE=3 SV=1
Length = 320
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 57/146 (39%), Gaps = 2/146 (1%)
Query: 22 LAVYTVLFKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRI 81
L T G ++ + + S +E + NC GLGAR L D V P GQ + +
Sbjct: 140 LDCLTQRLAATGCEIETRPLRSLAEAAEAAPIVINCAGLGARELAGDATVWPRFGQHVVL 199
Query: 82 KAPHITNFY--KNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLP 139
P + + + +I V GG G + E TE IL R + P
Sbjct: 200 TNPGLEQLFIERTGGSEWICYFAHPQRVVCGGISIPGRWDPTPEPEITERILQRCRRIQP 259
Query: 140 GVGACGGGQCWVGLRPHRYRVRVECE 165
+ + GLRP R VRVE E
Sbjct: 260 RLAEAAVIETITGLRPDRPSVRVEAE 285
>sp|P14920|OXDA_HUMAN D-amino-acid oxidase OS=Homo sapiens GN=DAO PE=1 SV=3
Length = 347
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 70/155 (45%), Gaps = 16/155 (10%)
Query: 33 GGKVIEKYISSFSELGSE-YNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFY- 90
G K ++ + SF E+ E + I NCTG+ A L D + P RGQ +++ AP + +F
Sbjct: 156 GVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFIL 215
Query: 91 -----KNEYDT-YIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILA---RTEELLPGV 141
+ Y++ YIIP VTLGG G+ + D +I R E L
Sbjct: 216 THDPERGIYNSPYIIPG--TQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNA 273
Query: 142 GACGGGQCWVGLRPHRYRVRVECEQTPGGKVNAGV 176
G G RP R ++R+E EQ G N V
Sbjct: 274 RIIGER---TGFRPVRPQIRLEREQLRTGPSNTEV 305
>sp|Q99042|OXDA_TRIVR D-amino-acid oxidase OS=Trigonopsis variabilis GN=DAO1 PE=3 SV=1
Length = 356
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 15/136 (11%)
Query: 48 GSEYNTIFNCTGLGARTL--CNDMHVIPVRGQTIRIK--APHITNFY-----KNEYDTYI 98
GS + I NC+GL AR L D + P+RGQ + ++ P + +F +NE +
Sbjct: 184 GSRPDVIVNCSGLFARFLGGVEDKKMYPIRGQVVLVRNSLPFMASFSSTPEKENEDEALY 243
Query: 99 IPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGG----GQCWVGLR 154
I FD +GG + + + + T IL+R + P + G +C VG R
Sbjct: 244 IMTRFDGTSIIGGCFQPNNWSSEPDPSLTHRILSRALDRFPELTKDGPLDIVREC-VGHR 302
Query: 155 PHRY-RVRVECEQTPG 169
P R RVE E+ PG
Sbjct: 303 PGREGGPRVELEKIPG 318
>sp|P80324|OXDA_RHOTO D-amino-acid oxidase OS=Rhodosporidium toruloides GN=DAO1 PE=1 SV=1
Length = 368
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 33/194 (17%)
Query: 5 HYLKPVLPVYKRMSEEE------------LAVYTVLF--------KTAGGKVIEKYISSF 44
H+ K + P Y+ + E L+V+ + + G + ++S
Sbjct: 106 HWYKDITPNYRPLPSSECPPGAIGVTYDTLSVHAPKYCQYLARELQKLGATFERRTVTSL 165
Query: 45 SELGSEYNTIFNCTGLGARTLC--NDMHVIPVRGQTIRIKAP---HITNFYKNEYDTYII 99
+ + + N TGLGA+++ +D P+RGQT+ +K+P + YII
Sbjct: 166 EQAFDGADLVVNATGLGAKSIAGIDDQAAEPIRGQTVLVKSPCKRCTMDSSDPASPAYII 225
Query: 100 PNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCW------VGL 153
P ++ GGT G + V + IL L P + + G + VGL
Sbjct: 226 PRPGGEVIC-GGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRHNVGL 284
Query: 154 RPHRY-RVRVECEQ 166
RP R RVE E+
Sbjct: 285 RPARRGGPRVEAER 298
>sp|Q7WI07|DADA_BORBR D-amino acid dehydrogenase small subunit OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=dadA PE=3 SV=1
Length = 434
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 63 RTLCNDMHVIPVRGQTIRI-----KAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGH 117
R L D+ V PV+G ++ I A ++ Y + FD + +GG
Sbjct: 262 RPLGLDLPVYPVKGYSLTIPMTDESAAPVSTILDETYKVAV--TRFDQRIRVGGMAELAG 319
Query: 118 VNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRP 155
+ ++ +++ +L PG GA + W GLRP
Sbjct: 320 FDLRLKEARRKTLELVVNDLFPGSGAVEQAEFWTGLRP 357
>sp|Q7W641|DADA_BORPA D-amino acid dehydrogenase small subunit OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
GN=dadA PE=3 SV=1
Length = 434
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 63 RTLCNDMHVIPVRGQTIRI-----KAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGH 117
R L D+ V PV+G ++ I A ++ Y + FD + +GG
Sbjct: 262 RPLGLDLPVYPVKGYSLTIPMTDESAAPVSTILDETYKVAV--TRFDQRIRVGGMAELAG 319
Query: 118 VNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRP 155
+ ++ +++ +L PG GA + W GLRP
Sbjct: 320 FDLRLKEARRKTLELVVNDLSPGSGAVEQAEFWTGLRP 357
>sp|Q98B75|DADA2_RHILO D-amino acid dehydrogenase 2 small subunit OS=Rhizobium loti
(strain MAFF303099) GN=dadA2 PE=3 SV=1
Length = 416
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 58 TGLGARTLCNDMHVIPVRGQTIRI------KAPHITNFYKNEYDTYIIPNGFDSLVTLGG 111
+GL R D+ V PV+G T I K P I +++ Y + + + L
Sbjct: 258 SGLLGRRYGIDLPVYPVKGYTATIPLEDESKGPTIGGADEDQLMAY---SRLGNRLRLAS 314
Query: 112 TQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRP 155
T F +R + +D ++ +L PG + W GLRP
Sbjct: 315 TAEFTGFDRTHKPSDFTTMFRTARDLFPGAFDEKKAELWAGLRP 358
>sp|O31616|GLOX_BACSU Glycine oxidase OS=Bacillus subtilis (strain 168) GN=thiO PE=1 SV=1
Length = 369
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 57 CTGLGARTLCNDMHVIPVRGQTIRI---KAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQ 113
+G+ + L + +PV+G+ + + P Y + YI+P LV +G T
Sbjct: 205 WSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDH--CYIVPRKSGRLV-VGATM 261
Query: 114 NFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRP 155
G + + ES++ + + +LP + + W GLRP
Sbjct: 262 KPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRP 303
>sp|P24552|OXDA_FUSSO D-amino-acid oxidase OS=Fusarium solani subsp. pisi PE=1 SV=1
Length = 361
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 44 FSELGSEYNTIFNCTGLGARTL--CNDMHVIPVRGQTIRIKAPHITNFYKNEYDT----- 96
S G N I N TGLG+ L D + P RGQ + ++ + +
Sbjct: 181 LSHAGKTPNIIVNATGLGSYKLGGVEDKTMAPARGQIVVVRNESSPMLLTSGVEDGGADV 240
Query: 97 -YIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGG-------Q 148
Y++ LGGT + G+ + I+ R E+ P + A G G +
Sbjct: 241 MYLMQRAAGGGTILGGTYDVGNWESQPDPNIANRIMQRIVEVRPEI-ANGKGVKGLSVIR 299
Query: 149 CWVGLRPHRYR-VRVECEQ 166
VG+RP R VR+E E+
Sbjct: 300 HAVGMRPWRKDGVRIEEEK 318
>sp|P33642|Y4548_PSEAE Probable D-amino acid oxidase PA4548 OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=PA4548 PE=3 SV=3
Length = 364
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 63 RTLCNDMHVIPVRGQTIRIKAPHITNFYKN---EYDTYIIPNGFDSLVTLGGTQNFGHVN 119
+ L ++ V+PV+GQ I K +F Y IP D + +G T +
Sbjct: 211 KPLGLELPVVPVKGQMILYKC--AADFLPRMVLAKGRYAIPR-RDGHILIGSTLEHSGFD 267
Query: 120 RCVESTDTESILARTEELLPGVGACGGGQCWVGLRP 155
+ ES+ A ELLP + W GLRP
Sbjct: 268 KTPTDEAQESLRASAAELLPELADMQPVAHWAGLRP 303
>sp|A8I711|DADA_AZOC5 D-amino acid dehydrogenase small subunit OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=dadA PE=3 SV=1
Length = 417
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 19/129 (14%)
Query: 33 GGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRI------KAPHI 86
G + + Y+++ LGS GL D+ + PV+G +I + KAP +
Sbjct: 242 GDYIADSYVAA---LGSYMPGFLAPLGL-------DLPIYPVKGYSITVPILDEAKAP-V 290
Query: 87 TNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGG 146
+ Y I G S + +GG N+ + ++ E+L G G
Sbjct: 291 STVMDEYYKIAITRLG--SRIRVGGMAEIARFNKDLPPARQATLTLSVEDLFGGAGDQKK 348
Query: 147 GQCWVGLRP 155
+ W GLRP
Sbjct: 349 AEFWCGLRP 357
>sp|A9IP97|DADA_BORPD D-amino acid dehydrogenase small subunit OS=Bordetella petrii
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=dadA
PE=3 SV=1
Length = 434
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 33 GGKVI--EKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRI-----KAPH 85
GG+ + ++Y+++F GS GL ++ V PV+G ++ I +A
Sbjct: 240 GGETLAADRYVAAF---GSYTRGFLAPLGL-------ELPVYPVKGYSLTIPLASAEAAP 289
Query: 86 ITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACG 145
++ Y I FD+ + +GG + + ++ +L PG G
Sbjct: 290 VSTVLDETYKVAI--TRFDNRIRVGGMAELAGFDLGLNPAHRRTLEHVVTDLYPGCGEVA 347
Query: 146 GGQCWVGLRP 155
+ W GLRP
Sbjct: 348 QAEFWTGLRP 357
>sp|Q65TH4|MACB_MANSM Macrolide export ATP-binding/permease protein MacB OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=macB PE=3 SV=1
Length = 643
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 38 EKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTY 97
+K +S+ S LG+ TIFN TG G R M + V K ++ N
Sbjct: 294 QKILSNISGLGTNTMTIFNGTGFGDRR-AEQMQNLTVNDANALAKQSYVQN--------- 343
Query: 98 IIPNGFDSLVTLGGTQNFGHVN 119
+ PN S + + G Q+F N
Sbjct: 344 VTPNSSSSGLLIYGNQSFTSTN 365
>sp|Q1H378|DADA_METFK D-amino acid dehydrogenase small subunit OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dadA
PE=3 SV=1
Length = 417
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 68 DMHVIPVRGQTIRIK------APHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRC 121
D+ V PV+G +I + AP ++ Y T + FD+ + +GG +R
Sbjct: 266 DLPVYPVKGYSITVPIIDEALAP-VSTVLDETYKTAV--TRFDNRIRVGGMAELVGFDRR 322
Query: 122 VESTDTESILARTEELLPGVGACGGGQCWVGLRP 155
+ ++ +L PG W GLRP
Sbjct: 323 LSPRREGTLKLIVHDLFPGAADLSQTSFWTGLRP 356
>sp|P37296|STV1_YEAST V-type proton ATPase subunit a, Golgi isoform OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=STV1 PE=1
SV=2
Length = 890
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 16/62 (25%)
Query: 11 LPVYKRMSEEELAVYTVLFK---TAGGKVIEKYISS-------------FSELGSEYNTI 54
LPV+ M++ E VYT L K + G + E ++ S LGSEY+T+
Sbjct: 354 LPVWSAMTKREKYVYTTLNKFQQESQGLIAEGWVPSTELIHLQDSLKDYIETLGSEYSTV 413
Query: 55 FN 56
FN
Sbjct: 414 FN 415
>sp|A8F8I4|PURQ_THELT Phosphoribosylformylglycinamidine synthase 1 OS=Thermotoga
lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)
GN=purQ PE=3 SV=1
Length = 234
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 25/101 (24%)
Query: 85 HITNFYKNEYDTYIIPNGFD--SLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVG 142
H +FY+ E+D ++P GF + G F V R V +L VG
Sbjct: 34 HKDHFYEKEFDLIVLPGGFSYGDYLRAGAIARFSPVMRSVSKAAENGVLI--------VG 85
Query: 143 ACGGGQCW--VGLRP-------------HRYRVRVECEQTP 168
C G Q GL P H +RV+ +TP
Sbjct: 86 ICNGFQILTEAGLLPGVLMKNKDLRFHCHDVYLRVDNNKTP 126
>sp|Q3MHH6|PYRD2_BOVIN Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Bos taurus GN=PYROXD2 PE=2 SV=1
Length = 581
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 26/68 (38%)
Query: 91 KNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCW 150
K EYD ++ G + LV Q FG E A TEE++PG
Sbjct: 32 KPEYDAVVVGAGHNGLVAAAYLQRFGVNTAVFERRHVIGGAAVTEEIVPGFKFSRASYLL 91
Query: 151 VGLRPHRY 158
LRP Y
Sbjct: 92 SLLRPQIY 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,910,428
Number of Sequences: 539616
Number of extensions: 3401957
Number of successful extensions: 7292
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 7242
Number of HSP's gapped (non-prelim): 43
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)