Query psy1702
Match_columns 200
No_of_seqs 169 out of 1109
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 19:43:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3923|consensus 100.0 5.2E-35 1.1E-39 235.4 14.7 192 2-195 110-338 (342)
2 TIGR02352 thiamin_ThiO glycine 99.9 6.8E-23 1.5E-27 171.7 15.5 164 27-192 145-335 (337)
3 TIGR03197 MnmC_Cterm tRNA U-34 99.9 5.7E-22 1.2E-26 169.8 11.7 163 27-193 143-362 (381)
4 PRK01747 mnmC bifunctional tRN 99.8 4.2E-20 9.1E-25 168.6 12.9 163 27-193 416-633 (662)
5 PRK00711 D-amino acid dehydrog 99.8 2.7E-19 5.9E-24 154.5 13.8 165 27-193 209-402 (416)
6 TIGR01373 soxB sarcosine oxida 99.8 2E-18 4.3E-23 148.9 14.0 164 27-192 191-384 (407)
7 TIGR03377 glycerol3P_GlpA glyc 99.8 1.9E-18 4E-23 153.7 13.9 166 27-194 136-348 (516)
8 PRK12409 D-amino acid dehydrog 99.8 4.6E-18 1E-22 146.8 14.0 164 27-193 205-406 (410)
9 PRK13369 glycerol-3-phosphate 99.8 6.2E-18 1.3E-22 149.9 13.7 168 27-195 163-379 (502)
10 PRK11259 solA N-methyltryptoph 99.8 7.2E-18 1.6E-22 143.7 13.2 164 27-193 157-360 (376)
11 PRK11101 glpA sn-glycerol-3-ph 99.8 1.6E-17 3.4E-22 148.6 14.8 166 27-194 157-371 (546)
12 COG0665 DadA Glycine/D-amino a 99.8 1.3E-17 2.9E-22 142.4 12.8 165 27-193 164-367 (387)
13 TIGR03364 HpnW_proposed FAD de 99.7 1.4E-17 3E-22 141.7 11.3 155 27-184 153-364 (365)
14 TIGR03329 Phn_aa_oxid putative 99.7 4.7E-17 1E-21 142.8 14.8 166 27-193 191-394 (460)
15 PLN02464 glycerol-3-phosphate 99.7 4.9E-17 1.1E-21 147.4 13.5 165 27-193 240-454 (627)
16 PF01266 DAO: FAD dependent ox 99.7 1.1E-17 2.3E-22 140.3 8.3 160 27-189 155-358 (358)
17 PRK12266 glpD glycerol-3-phosp 99.7 1.1E-16 2.5E-21 142.0 14.3 168 27-195 163-380 (508)
18 TIGR01377 soxA_mon sarcosine o 99.7 7.6E-16 1.7E-20 131.4 15.1 165 27-193 153-360 (380)
19 PRK11728 hydroxyglutarate oxid 99.7 3.9E-16 8.5E-21 134.3 10.9 163 27-190 157-393 (393)
20 COG0578 GlpA Glycerol-3-phosph 99.6 6.4E-15 1.4E-19 129.5 12.7 168 27-196 172-389 (532)
21 KOG2844|consensus 99.6 1.6E-14 3.5E-19 127.7 11.5 165 27-193 195-401 (856)
22 KOG2853|consensus 99.5 5.6E-14 1.2E-18 116.3 10.0 167 27-193 251-482 (509)
23 KOG0042|consensus 99.4 2.1E-12 4.6E-17 112.3 8.4 163 29-193 234-448 (680)
24 KOG2852|consensus 98.8 7.2E-08 1.6E-12 78.7 11.5 168 27-196 155-366 (380)
25 COG0579 Predicted dehydrogenas 98.8 5.3E-08 1.1E-12 84.4 10.5 184 8-192 113-374 (429)
26 KOG2820|consensus 98.5 1.5E-06 3.3E-11 72.5 11.6 169 27-196 161-381 (399)
27 TIGR01320 mal_quin_oxido malat 98.2 9.8E-06 2.1E-10 71.9 9.7 165 27-192 186-444 (483)
28 PRK13339 malate:quinone oxidor 98.2 5.2E-06 1.1E-10 73.8 7.8 165 27-192 192-451 (497)
29 PTZ00383 malate:quinone oxidor 98.1 1.3E-05 2.8E-10 71.4 7.5 57 27-83 219-300 (497)
30 PRK05257 malate:quinone oxidor 98.0 2.8E-05 6.1E-10 69.2 8.4 166 27-193 191-450 (494)
31 PLN02697 lycopene epsilon cycl 98.0 0.00051 1.1E-08 61.7 15.7 164 26-194 199-410 (529)
32 PF05834 Lycopene_cycl: Lycope 97.4 0.013 2.8E-07 50.4 15.3 174 13-192 80-290 (374)
33 TIGR01790 carotene-cycl lycope 97.3 0.022 4.7E-07 48.8 16.6 163 27-193 93-299 (388)
34 KOG2665|consensus 97.3 0.00074 1.6E-08 56.4 6.7 183 8-191 158-452 (453)
35 PLN02463 lycopene beta cyclase 97.1 0.032 7E-07 49.2 15.2 164 27-195 122-333 (447)
36 TIGR02032 GG-red-SF geranylger 97.1 0.012 2.7E-07 47.8 12.0 125 27-158 99-253 (295)
37 PRK06185 hypothetical protein; 95.5 0.39 8.4E-06 41.3 12.6 113 27-142 116-256 (407)
38 TIGR03378 glycerol3P_GlpB glyc 93.8 0.045 9.8E-07 47.8 2.6 41 27-67 271-328 (419)
39 KOG0404|consensus 92.1 0.11 2.4E-06 41.7 2.3 39 27-65 78-127 (322)
40 TIGR01789 lycopene_cycl lycope 91.5 5.6 0.00012 34.1 12.4 103 50-158 126-239 (370)
41 PF06039 Mqo: Malate:quinone o 91.3 1.2 2.5E-05 39.5 7.9 169 27-196 189-448 (488)
42 COG0644 FixC Dehydrogenases (f 91.3 8.9 0.00019 33.1 13.8 161 26-194 102-307 (396)
43 PRK08773 2-octaprenyl-3-methyl 91.1 4.6 9.9E-05 34.6 11.5 82 27-110 121-226 (392)
44 PRK08244 hypothetical protein; 88.2 18 0.00039 32.1 15.2 83 27-110 108-216 (493)
45 TIGR02023 BchP-ChlP geranylger 87.1 18 0.0004 30.9 15.1 47 17-63 89-156 (388)
46 COG1252 Ndh NADH dehydrogenase 85.1 0.79 1.7E-05 40.0 2.9 55 27-81 217-283 (405)
47 TIGR02028 ChlP geranylgeranyl 84.2 27 0.00058 30.2 13.9 47 17-63 90-161 (398)
48 PRK07608 ubiquinone biosynthes 80.4 6.8 0.00015 33.3 6.8 83 27-110 119-224 (388)
49 PRK04176 ribulose-1,5-biphosph 74.3 6.8 0.00015 31.9 4.9 38 26-63 111-174 (257)
50 PF04820 Trp_halogenase: Trypt 73.1 51 0.0011 29.2 10.4 37 27-63 162-212 (454)
51 PRK06134 putative FAD-binding 68.9 4.9 0.00011 36.7 3.2 38 27-64 225-280 (581)
52 PLN00093 geranylgeranyl diphos 68.8 83 0.0018 27.8 14.6 47 17-63 129-200 (450)
53 TIGR03169 Nterm_to_SelD pyridi 67.3 8.3 0.00018 32.6 4.1 37 27-63 62-108 (364)
54 TIGR02730 carot_isom carotene 66.4 6 0.00013 35.2 3.2 37 27-63 237-287 (493)
55 PRK08401 L-aspartate oxidase; 65.3 8.3 0.00018 34.1 3.8 39 27-65 128-178 (466)
56 PRK05732 2-octaprenyl-6-methox 64.9 86 0.0019 26.5 11.6 82 27-110 120-226 (395)
57 TIGR01292 TRX_reduct thioredox 63.9 11 0.00024 30.4 4.1 38 26-63 64-113 (300)
58 COG0492 TrxB Thioredoxin reduc 63.7 13 0.00029 31.1 4.6 39 27-65 69-118 (305)
59 COG2081 Predicted flavoprotein 62.7 9.3 0.0002 33.3 3.5 36 27-62 119-167 (408)
60 PRK06847 hypothetical protein; 61.6 10 0.00022 32.0 3.6 38 27-64 115-165 (375)
61 PRK10157 putative oxidoreducta 59.7 8.6 0.00019 33.6 2.9 37 27-63 116-165 (428)
62 PRK07333 2-octaprenyl-6-methox 57.9 11 0.00024 32.2 3.2 81 27-109 119-223 (403)
63 PRK12779 putative bifunctional 57.7 20 0.00043 35.0 5.1 54 9-63 347-405 (944)
64 TIGR03143 AhpF_homolog putativ 57.2 18 0.00039 32.8 4.6 54 12-65 52-117 (555)
65 PF13454 NAD_binding_9: FAD-NA 57.1 11 0.00023 28.0 2.6 30 31-60 112-155 (156)
66 PF03486 HI0933_like: HI0933-l 56.0 8.9 0.00019 33.5 2.3 36 27-62 117-166 (409)
67 TIGR00275 flavoprotein, HI0933 53.5 18 0.00038 31.4 3.7 36 27-62 113-160 (400)
68 PRK05714 2-octaprenyl-3-methyl 52.7 14 0.0003 31.8 2.9 37 27-63 120-169 (405)
69 PRK06834 hypothetical protein; 51.1 16 0.00034 32.7 3.1 37 27-63 108-157 (488)
70 TIGR03862 flavo_PP4765 unchara 50.8 19 0.00042 31.1 3.5 36 27-62 94-141 (376)
71 TIGR01813 flavo_cyto_c flavocy 49.9 20 0.00043 31.2 3.5 37 27-63 138-193 (439)
72 PRK04965 NADH:flavorubredoxin 48.5 25 0.00055 29.9 3.9 50 27-76 191-254 (377)
73 PF13738 Pyr_redox_3: Pyridine 48.4 10 0.00022 28.8 1.4 38 27-64 90-140 (203)
74 TIGR01984 UbiH 2-polyprenyl-6- 47.1 17 0.00038 30.7 2.7 37 27-63 113-163 (382)
75 TIGR02485 CobZ_N-term precorri 47.0 25 0.00054 30.6 3.7 37 27-63 131-184 (432)
76 PRK09853 putative selenate red 46.5 33 0.00072 33.7 4.6 54 9-63 580-636 (1019)
77 PRK10015 oxidoreductase; Provi 46.4 21 0.00046 31.2 3.1 37 27-63 116-165 (429)
78 PRK05192 tRNA uridine 5-carbox 45.7 25 0.00054 32.6 3.6 38 27-64 108-159 (618)
79 PRK08255 salicylyl-CoA 5-hydro 45.7 23 0.00049 33.6 3.4 38 26-63 104-142 (765)
80 TIGR01988 Ubi-OHases Ubiquinon 45.5 21 0.00046 30.0 3.0 37 27-63 114-164 (385)
81 PRK06184 hypothetical protein; 44.4 25 0.00055 31.3 3.4 37 27-63 117-169 (502)
82 PRK12775 putative trifunctiona 44.3 39 0.00085 33.2 4.8 54 10-64 472-531 (1006)
83 TIGR00136 gidA glucose-inhibit 44.2 29 0.00064 32.1 3.8 36 27-62 104-154 (617)
84 PRK08274 tricarballylate dehyd 43.1 30 0.00065 30.4 3.6 37 27-63 139-193 (466)
85 PRK08020 ubiF 2-octaprenyl-3-m 42.9 24 0.00052 30.0 2.9 56 27-82 120-194 (391)
86 PTZ00318 NADH dehydrogenase-li 42.4 41 0.00089 29.3 4.3 53 27-79 236-298 (424)
87 PRK08163 salicylate hydroxylas 41.8 30 0.00065 29.4 3.3 38 27-64 117-168 (396)
88 COG2509 Uncharacterized FAD-de 37.2 44 0.00094 29.8 3.6 40 27-66 181-234 (486)
89 PF00890 FAD_binding_2: FAD bi 36.3 38 0.00083 29.1 3.2 37 27-63 149-204 (417)
90 PRK14694 putative mercuric red 36.2 65 0.0014 28.4 4.7 53 27-79 226-293 (468)
91 PRK06481 fumarate reductase fl 36.1 45 0.00098 29.9 3.7 37 27-63 198-252 (506)
92 PRK05329 anaerobic glycerol-3- 36.0 46 0.001 29.3 3.6 20 174-193 400-419 (422)
93 PRK04965 NADH:flavorubredoxin 35.8 43 0.00093 28.5 3.4 36 27-62 66-111 (377)
94 PRK12843 putative FAD-binding 35.6 43 0.00094 30.6 3.5 38 27-64 229-284 (578)
95 TIGR01424 gluta_reduc_2 glutat 35.5 49 0.0011 29.0 3.7 36 27-62 98-142 (446)
96 PRK07190 hypothetical protein; 35.4 42 0.00092 29.9 3.4 36 27-62 117-165 (487)
97 TIGR02734 crtI_fam phytoene de 35.3 41 0.0009 29.8 3.3 36 27-62 227-276 (502)
98 PRK07121 hypothetical protein; 34.5 48 0.001 29.4 3.6 37 27-63 185-240 (492)
99 KOG1199|consensus 33.8 32 0.0007 26.7 2.0 36 27-62 48-95 (260)
100 TIGR00551 nadB L-aspartate oxi 33.6 59 0.0013 28.9 4.0 38 27-64 136-191 (488)
101 PRK12842 putative succinate de 33.4 44 0.00096 30.5 3.2 36 27-62 222-275 (574)
102 PF01494 FAD_binding_3: FAD bi 33.1 45 0.00097 27.3 3.0 37 27-63 119-173 (356)
103 PLN02546 glutathione reductase 32.9 54 0.0012 29.9 3.7 36 27-62 186-228 (558)
104 PRK12831 putative oxidoreducta 32.6 73 0.0016 28.2 4.4 52 10-62 182-240 (464)
105 PRK15317 alkyl hydroperoxide r 32.4 89 0.0019 28.0 4.9 51 14-64 260-324 (517)
106 TIGR01317 GOGAT_sm_gam glutama 32.2 67 0.0015 28.6 4.1 37 26-62 200-240 (485)
107 PRK05945 sdhA succinate dehydr 32.0 57 0.0012 29.7 3.7 38 27-64 143-199 (575)
108 PLN02172 flavin-containing mon 31.8 1E+02 0.0022 27.4 5.1 38 27-64 119-175 (461)
109 PRK08626 fumarate reductase fl 31.4 63 0.0014 30.1 3.9 38 27-64 166-222 (657)
110 TIGR01812 sdhA_frdA_Gneg succi 29.9 63 0.0014 29.3 3.6 37 27-63 137-192 (566)
111 PRK12839 hypothetical protein; 29.7 62 0.0013 29.6 3.5 37 27-63 222-277 (572)
112 PRK07573 sdhA succinate dehydr 29.7 75 0.0016 29.5 4.1 37 27-63 178-233 (640)
113 PF02474 NodA: Nodulation prot 29.3 67 0.0015 24.8 3.0 39 118-156 11-54 (196)
114 PRK09897 hypothetical protein; 29.2 73 0.0016 29.0 3.8 38 27-64 115-168 (534)
115 TIGR02374 nitri_red_nirB nitri 29.1 64 0.0014 30.8 3.6 37 27-63 62-109 (785)
116 PRK10262 thioredoxin reductase 28.8 86 0.0019 25.9 4.0 37 27-63 71-118 (321)
117 PTZ00318 NADH dehydrogenase-li 28.8 71 0.0015 27.8 3.6 37 27-63 70-126 (424)
118 TIGR03315 Se_ygfK putative sel 28.8 94 0.002 30.7 4.7 53 10-63 579-634 (1012)
119 PRK09754 phenylpropionate diox 28.5 71 0.0015 27.4 3.6 38 27-64 66-114 (396)
120 PRK07588 hypothetical protein; 28.5 62 0.0013 27.5 3.2 33 31-63 114-159 (391)
121 PF03437 BtpA: BtpA family; I 27.7 73 0.0016 26.1 3.2 32 103-135 221-253 (254)
122 PRK09564 coenzyme A disulfide 27.3 76 0.0016 27.6 3.6 52 27-78 199-264 (444)
123 TIGR03169 Nterm_to_SelD pyridi 26.8 97 0.0021 26.0 4.0 40 27-66 199-247 (364)
124 TIGR01318 gltD_gamma_fam gluta 26.8 91 0.002 27.6 4.0 38 26-63 198-239 (467)
125 PRK06116 glutathione reductase 26.7 79 0.0017 27.6 3.6 36 27-62 101-143 (450)
126 PRK08010 pyridine nucleotide-d 26.7 74 0.0016 27.7 3.4 38 27-64 207-256 (441)
127 PRK06175 L-aspartate oxidase; 26.6 97 0.0021 27.1 4.1 37 27-63 136-190 (433)
128 TIGR01816 sdhA_forward succina 26.5 82 0.0018 28.7 3.7 38 27-64 127-183 (565)
129 PRK13977 myosin-cross-reactive 26.5 1.1E+02 0.0025 28.1 4.5 38 27-64 234-295 (576)
130 PRK06854 adenylylsulfate reduc 26.0 77 0.0017 29.2 3.5 37 27-63 140-196 (608)
131 PF10087 DUF2325: Uncharacteri 25.8 1.2E+02 0.0027 20.3 3.7 53 23-75 13-82 (97)
132 PRK07845 flavoprotein disulfid 25.7 1E+02 0.0022 27.3 4.1 37 27-63 100-152 (466)
133 TIGR01316 gltA glutamate synth 25.1 77 0.0017 27.9 3.2 38 27-64 191-232 (449)
134 PF01220 DHquinase_II: Dehydro 24.9 77 0.0017 23.5 2.6 51 12-63 9-79 (140)
135 PRK14727 putative mercuric red 23.4 92 0.002 27.6 3.4 38 27-64 236-285 (479)
136 PF01134 GIDA: Glucose inhibit 23.1 70 0.0015 27.9 2.5 34 27-60 103-150 (392)
137 TIGR01088 aroQ 3-dehydroquinat 22.9 78 0.0017 23.5 2.3 51 12-63 8-78 (141)
138 PRK05976 dihydrolipoamide dehy 22.8 1E+02 0.0022 27.2 3.6 36 27-62 100-154 (472)
139 PRK12845 3-ketosteroid-delta-1 22.3 1.2E+02 0.0026 27.7 3.9 37 27-63 225-279 (564)
140 PRK12814 putative NADPH-depend 22.2 1.3E+02 0.0028 28.0 4.2 37 27-63 251-291 (652)
141 PRK09126 hypothetical protein; 22.0 84 0.0018 26.6 2.8 33 31-63 123-168 (392)
142 PRK08275 putative oxidoreducta 21.9 1.2E+02 0.0025 27.6 3.8 37 27-63 145-201 (554)
143 PTZ00139 Succinate dehydrogena 21.9 1.1E+02 0.0025 28.2 3.8 37 27-63 174-230 (617)
144 PLN02507 glutathione reductase 21.8 1.2E+02 0.0026 27.2 3.8 36 27-62 132-179 (499)
145 PRK06416 dihydrolipoamide dehy 21.5 1.1E+02 0.0025 26.7 3.6 36 27-62 100-146 (462)
146 PRK08205 sdhA succinate dehydr 21.5 1.1E+02 0.0023 28.1 3.5 37 27-63 148-207 (583)
147 COG3075 GlpB Anaerobic glycero 21.3 48 0.0011 28.5 1.1 24 174-197 397-420 (421)
148 PRK12844 3-ketosteroid-delta-1 21.1 1E+02 0.0022 28.0 3.3 37 27-63 216-270 (557)
149 PRK12769 putative oxidoreducta 20.6 1.4E+02 0.0031 27.6 4.2 38 26-63 384-425 (654)
150 PRK06467 dihydrolipoamide dehy 20.6 1.3E+02 0.0028 26.6 3.8 36 27-62 101-148 (471)
151 COG1252 Ndh NADH dehydrogenase 20.4 1.2E+02 0.0026 26.6 3.4 39 27-65 65-114 (405)
152 PRK14989 nitrite reductase sub 20.3 1.2E+02 0.0026 29.3 3.7 36 27-62 67-113 (847)
153 cd00466 DHQase_II Dehydroquina 20.1 80 0.0017 23.4 1.9 51 12-63 8-78 (140)
154 PRK12810 gltD glutamate syntha 20.1 1E+02 0.0023 27.2 3.0 37 27-63 201-241 (471)
No 1
>KOG3923|consensus
Probab=100.00 E-value=5.2e-35 Score=235.37 Aligned_cols=192 Identities=32% Similarity=0.523 Sum_probs=169.3
Q ss_pred CCCCCCccccCCceecChhhhhHhH------------------------HHHHHcCcEEEEEecccccccc-CCCCEEEE
Q psy1702 2 QNNHYLKPVLPVYKRMSEEELAVYT------------------------VLFKTAGGKVIEKYISSFSELG-SEYNTIFN 56 (200)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~Gv~~~~~~V~~l~~~~-g~ad~VV~ 56 (200)
|+.++|+|.|+|||+|+++||+.|| +++.++|++|.+++|.++++.. .++|.|||
T Consensus 110 ~~~~~w~diV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~l~e~Gvef~~r~v~~l~E~~~~~~DVivN 189 (342)
T KOG3923|consen 110 DQQRSWGDIVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKKRLTENGVEFVQRRVESLEEVARPEYDVIVN 189 (342)
T ss_pred hhhhhHHhhhhhhhcCCHHHhcCCCCccccceeEEEeeccchhhhHHHHHHHHhcCcEEEEeeeccHHHhccCCCcEEEE
Confidence 3457999999999999999998752 8999999999999999998876 38999999
Q ss_pred cCCCCcccccCCCCceeecceEEEEeCCCcceEEecC-CeEEEEeCCCCCeEEEccceecCCCCCCCChHHHHHHHHHHH
Q psy1702 57 CTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYKNE-YDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTE 135 (200)
Q Consensus 57 AaG~~s~~L~~~~pl~p~rGq~~~~~~~~~~~~i~~~-~~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~~~ll~~~~ 135 (200)
|+|.|+.+|+.+-.|+|+|||++.++.|+.+++++.+ +..|++|- .+. +++||+.+.++||.+++.++...+++++.
T Consensus 190 CtGL~a~~L~gDd~~yPiRGqVl~V~ApWvkhf~~~D~~~ty~iP~-~~~-V~lGg~~Q~g~w~~ei~~~D~~dIl~rc~ 267 (342)
T KOG3923|consen 190 CTGLGAGKLAGDDDLYPIRGQVLKVDAPWVKHFIYRDFSRTYIIPG-TES-VTLGGTKQEGNWNLEITDEDRRDILERCC 267 (342)
T ss_pred CCccccccccCCcceeeccceEEEeeCCceeEEEEecCCccEEecC-Cce-EEEccccccCcccCcCChhhHHHHHHHHH
Confidence 9999999999876699999999999999999988733 32599998 666 99999999999999999999999999999
Q ss_pred hhCCCCCCCCCcceeEeecCCCCCceeeeEEeC-----------CCeeccceeecHHHHHHHHHHHHHHhh
Q psy1702 136 ELLPGVGACGGGQCWVGLRPHRYRVRVECEQTP-----------GGKVNAGVGVVVGRKKRLTDLLLTFNA 195 (200)
Q Consensus 136 ~~~P~l~~~~v~~~w~G~Rp~tpD~~i~~~~~~-----------~g~~~~G~~~a~~~A~~~a~li~~~~~ 195 (200)
++.|+|..+++++.|+|+||.++..+++.+... .||..+|+++.+|||..++.|+.....
T Consensus 268 aL~P~l~~a~ii~E~vGlRP~Rk~vRlE~e~~~~~~k~~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~~~l~ 338 (342)
T KOG3923|consen 268 ALEPSLRHAEIIREWVGLRPGRKQVRLEAELRTRGGKRLTVVHNYGHGGNGFTLGWGTALEAAKLVLDALG 338 (342)
T ss_pred HhCcccccceehhhhhcccCCCCceeeeeeeecCCCccceeEeeccCCCCceecccchHHHHHHHHHHHhh
Confidence 999999999999999999999999777765321 345558899999999999999887643
No 2
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.90 E-value=6.8e-23 Score=171.65 Aligned_cols=164 Identities=20% Similarity=0.298 Sum_probs=133.3
Q ss_pred HHHHHcCcEEEEE-eccccccc----------cC--CCCEEEEcCCCCcccccCCCCceeecceEEEEeCCC---cceE-
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL----------GS--EYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPH---ITNF- 89 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~----------~g--~ad~VV~AaG~~s~~L~~~~pl~p~rGq~~~~~~~~---~~~~- 89 (200)
+.|+++|++++.. +|+++... .+ .||.||||+|+|+..|+. +|+.|+|||++.++.+. ....
T Consensus 145 ~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G~~~~~l~~-~~~~~~~g~~~~~~~~~~~~~~~~~ 223 (337)
T TIGR02352 145 KALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGDVQADQVVLAAGAWAGELLP-LPLRPVRGQPLRLEAPAVPLLNRPL 223 (337)
T ss_pred HHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCCEEECCEEEEcCChhhhhccc-CCccccCceEEEeeccccccCCccc
Confidence 8888999999984 78776532 13 799999999999999877 89999999999987541 1111
Q ss_pred --EecCCeEEEEeCCCCCeEEEccceecCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCcceeEeecCCCCC--ceeeeE
Q psy1702 90 --YKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYR--VRVECE 165 (200)
Q Consensus 90 --i~~~~~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~~~ll~~~~~~~P~l~~~~v~~~w~G~Rp~tpD--~~i~~~ 165 (200)
...+...|++|. .++++++|++.+..+++..++.+..+.+++.+.++||.+.+.++.+.|+|+||+|+| |+|+..
T Consensus 224 ~~~~~~~~~y~~p~-~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~~~g~r~~t~D~~piig~~ 302 (337)
T TIGR02352 224 RAVVYGRRVYIVPR-RDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALKEARLLETWAGLRPGTPDNLPYIGEH 302 (337)
T ss_pred ceEEEcCCEEEEEc-CCCeEEEEEeccccCccCCCCHHHHHHHHHHHHHhCCCcccCcHHHheecCCCCCCCCCCEeCcc
Confidence 122234899998 788899999988777777788899999999999999999999999999999999999 888876
Q ss_pred EeCCCee------ccceeecHHHHHHHHHHHHH
Q psy1702 166 QTPGGKV------NAGVGVVVGRKKRLTDLLLT 192 (200)
Q Consensus 166 ~~~~g~~------~~G~~~a~~~A~~~a~li~~ 192 (200)
+..+|.+ .+|+++++++|+.+|++|..
T Consensus 303 ~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~~ 335 (337)
T TIGR02352 303 PEDRRLLIATGHYRNGILLAPATAEVIADLILG 335 (337)
T ss_pred CCCCCEEEEcccccCceehhhHHHHHHHHHHhc
Confidence 5444543 36788999999999999874
No 3
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.87 E-value=5.7e-22 Score=169.76 Aligned_cols=163 Identities=17% Similarity=0.149 Sum_probs=130.5
Q ss_pred HHHHHcCcEEEE-Eeccccccc---------cC---CCCEEEEcCCCCcccccC--CCCceeecceEEEEeCCC----cc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGARTLCN--DMHVIPVRGQTIRIKAPH----IT 87 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s~~L~~--~~pl~p~rGq~~~~~~~~----~~ 87 (200)
++|++ |++++. .+|++++.. .+ .||+||+|+|+|+..|.. .+|+.|+|||++.++++. ..
T Consensus 143 ~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~~~~~pi~p~rg~~~~~~~~~~~~~~~ 221 (381)
T TIGR03197 143 AHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQLAQTAHLPLRPVRGQVSHLPATEALSALK 221 (381)
T ss_pred hccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccccccccccCCccccccceeeccCCCcccccC
Confidence 66677 999988 478777532 12 699999999999999865 689999999999987532 22
Q ss_pred eEEecCCeEEEEeCCCCCeEEEccceecCCCCCCCChHHHHHHHHHHHhhCCCCC-----CCCCcceeEeecCCCCC--c
Q psy1702 88 NFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVG-----ACGGGQCWVGLRPHRYR--V 160 (200)
Q Consensus 88 ~~i~~~~~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~~~ll~~~~~~~P~l~-----~~~v~~~w~G~Rp~tpD--~ 160 (200)
.++..+ .|++|. .+|++++|++++..+.+..++.+..+.+++.+.+++|.+. +.++.+.|+|+||+||| |
T Consensus 222 ~~~~~~--~y~~p~-~~g~~~iG~t~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~G~r~~t~D~~P 298 (381)
T TIGR03197 222 TVLCYD--GYLTPA-NNGEHCIGASYDRNDDDLALREADHAENLERLAECLPALAWASEVDISALQGRVGVRCASPDHLP 298 (381)
T ss_pred ceEeCC--ceeccc-CCCceEeecccCCCCCCCCcCHHHHHHHHHHHHHhCcccchhhccCccccCceEEEeccCCCcCc
Confidence 233232 699999 7888999999877666777788889999999999999987 78999999999999999 8
Q ss_pred eeeeEEe-------------------------CCCeec------cceeecHHHHHHHHHHHHHH
Q psy1702 161 RVECEQT-------------------------PGGKVN------AGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 161 ~i~~~~~-------------------------~~g~~~------~G~~~a~~~A~~~a~li~~~ 193 (200)
.|++.+. .+|+++ +|+++++++|+.++++|.+.
T Consensus 299 iig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~G~~g~G~~~ap~~g~~la~~i~~~ 362 (381)
T TIGR03197 299 LVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYYPGLYVLGGLGSRGLTSAPLAAEILAAQICGE 362 (381)
T ss_pred cCCCCCCHHHHHHHHHHhcccccccccccCCCCCCeEEEecccchHHHHHHHHHHHHHHHHhCC
Confidence 8887543 456543 57888889999999999653
No 4
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.83 E-value=4.2e-20 Score=168.57 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=129.2
Q ss_pred HHHHHcCcEEEE-Eeccccccc---------cC---CCCEEEEcCCCCcccccC--CCCceeecceEEEEeCCC----cc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGARTLCN--DMHVIPVRGQTIRIKAPH----IT 87 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s~~L~~--~~pl~p~rGq~~~~~~~~----~~ 87 (200)
+.+++ |++++. .+|++++.. .+ .+|.||+|+|+|+..|.. .+|+.|+|||++.++.+. +.
T Consensus 416 ~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~~~~lpl~p~RGqv~~~~~~~~~~~~~ 494 (662)
T PRK01747 416 ALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAARFAQTAHLPLYSVRGQVSHLPTTPALSALK 494 (662)
T ss_pred Hhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCccccccccCCCcccccceEEeecCCccccccC
Confidence 66666 899987 467776532 12 599999999999998865 689999999999886532 23
Q ss_pred eEEecCCeEEEEe-CCCCCeEEEccceecCCCCCCCChHHHHHHHHHHHhhCCCC-----CCCCCcceeEeecCCCCC--
Q psy1702 88 NFYKNEYDTYIIP-NGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGV-----GACGGGQCWVGLRPHRYR-- 159 (200)
Q Consensus 88 ~~i~~~~~~y~~p-~~~~g~~~iG~t~~~~~~~~~~~~~~~~~ll~~~~~~~P~l-----~~~~v~~~w~G~Rp~tpD-- 159 (200)
.+++.+ .|++| . .+|++++|+|++.++.+..++.+..+.+++++.+++|.+ .+.++.+.|+|+||+|||
T Consensus 495 ~~~~~~--~Y~~p~~-~~g~~~iGat~~~~~~~~~~~~~~~~~~~~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~tpD~~ 571 (662)
T PRK01747 495 QVLCYD--GYLTPQP-ANGTHCIGASYDRDDTDTAFREADHQENLERLAECLPQALWAKEVDVSALQGRVGFRCASRDRL 571 (662)
T ss_pred ceeECC--ceeCCCC-CCCceEeCcccCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhccCccccCceEEEeccCCCcc
Confidence 333443 69999 7 677799999998888888888999999999999999987 467889999999999999
Q ss_pred ceeee----------------------EEeCCCee------ccceeecHHHHHHHHHHHHHH
Q psy1702 160 VRVEC----------------------EQTPGGKV------NAGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 160 ~~i~~----------------------~~~~~g~~------~~G~~~a~~~A~~~a~li~~~ 193 (200)
|+||. .+..+|++ ..|+++++.+|+.++++|.+.
T Consensus 572 PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~~gl~v~~G~gs~Gl~~ap~~a~~lA~li~g~ 633 (662)
T PRK01747 572 PMVGNVPDEAATLAEYAALANQQPARDAPRLPGLYVAGALGSRGLCSAPLGAELLASQIEGE 633 (662)
T ss_pred cccCCCCCHHHHHHHHHhhhhccccccCCCCCCeEEEecccccHHHHHHHHHHHHHHHHhCC
Confidence 88887 22224443 368889999999999999763
No 5
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.81 E-value=2.7e-19 Score=154.50 Aligned_cols=165 Identities=19% Similarity=0.273 Sum_probs=126.4
Q ss_pred HHHHHcCcEEEE-Eeccccccc----------cC--CCCEEEEcCCCCcccccC----CCCceeecceEEEEeCCC---c
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL----------GS--EYNTIFNCTGLGARTLCN----DMHVIPVRGQTIRIKAPH---I 86 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~----------~g--~ad~VV~AaG~~s~~L~~----~~pl~p~rGq~~~~~~~~---~ 86 (200)
+.++++|++++. .+|++++.. .+ .+|.||+|+|+|+..++. ++|+.|.|||++.++.+. .
T Consensus 209 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~~~~a~~VV~a~G~~~~~l~~~~g~~~pi~p~rg~~~~~~~~~~~~~ 288 (416)
T PRK00711 209 AMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALGSYSTALLKPLGVDIPVYPLKGYSLTVPITDEDRA 288 (416)
T ss_pred HHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCcEEeCCEEEECCCcchHHHHHHhCCCcccCCccceEEEEecCCCCCC
Confidence 677888999987 477776432 12 799999999999998753 579999999988764321 1
Q ss_pred c-eEEecCCeEEEEeCCCCCeEEEccceecCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCcceeEeecCCCCC--ceee
Q psy1702 87 T-NFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYR--VRVE 163 (200)
Q Consensus 87 ~-~~i~~~~~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~~~ll~~~~~~~P~l~~~~v~~~w~G~Rp~tpD--~~i~ 163 (200)
. ..+.+....+.+++ .++++++|++.+..+++..++.+..+.+.+.+.++||.+.+.++.+.|+|+||+|+| |.|+
T Consensus 289 p~~~~~~~~~~~~~~~-~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~r~~t~D~~PiIG 367 (416)
T PRK00711 289 PVSTVLDETYKIAITR-FDDRIRVGGMAEIVGFDLRLDPARRETLEMVVRDLFPGGGDLSQATFWTGLRPMTPDGTPIVG 367 (416)
T ss_pred CceeEEecccCEEEee-cCCceEEEEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcccccccceeeccCCCCCCCCCEeC
Confidence 1 12223222345566 566799999887766677778888999999999999999988999999999999999 8888
Q ss_pred eEEeCCCee------ccceeecHHHHHHHHHHHHHH
Q psy1702 164 CEQTPGGKV------NAGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 164 ~~~~~~g~~------~~G~~~a~~~A~~~a~li~~~ 193 (200)
..+. +|.+ .+|+++++++|+.++++|.+.
T Consensus 368 ~~~~-~gl~~a~G~~g~G~~~ap~~g~~la~li~g~ 402 (416)
T PRK00711 368 ATRY-KNLWLNTGHGTLGWTMACGSGQLLADLISGR 402 (416)
T ss_pred CcCC-CCEEEecCCchhhhhhhhhHHHHHHHHHcCC
Confidence 6532 4543 468889999999999999764
No 6
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.79 E-value=2e-18 Score=148.94 Aligned_cols=164 Identities=11% Similarity=0.081 Sum_probs=127.2
Q ss_pred HHHHHcCcEEEEE-eccccccc-----------cC--CCCEEEEcCCCCcccccC----CCCceeecceEEEEeCC--Cc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL-----------GS--EYNTIFNCTGLGARTLCN----DMHVIPVRGQTIRIKAP--HI 86 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~-----------~g--~ad~VV~AaG~~s~~L~~----~~pl~p~rGq~~~~~~~--~~ 86 (200)
++++++|++++.. +|++++.. .+ .++.||+|||.|+..+.. .+|+.|.++|++++++. ..
T Consensus 191 ~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 270 (407)
T TIGR01373 191 RGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGHSSVVAAMAGFRLPIESHPLQALVSEPLKPII 270 (407)
T ss_pred HHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChhhHHHHHHcCCCCCcCcccceEEEecCCCCCc
Confidence 6778899999984 78777421 12 789999999999987642 57899999998887652 22
Q ss_pred ceEEe-cCCeEEEEeCCCCCeEEEcccee-cCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCcceeEeecCCCCC--cee
Q psy1702 87 TNFYK-NEYDTYIIPNGFDSLVTLGGTQN-FGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYR--VRV 162 (200)
Q Consensus 87 ~~~i~-~~~~~y~~p~~~~g~~~iG~t~~-~~~~~~~~~~~~~~~ll~~~~~~~P~l~~~~v~~~w~G~Rp~tpD--~~i 162 (200)
..+++ .+...|++|. .+|++++|++.+ ....+...+.+..+.+++.+.+++|.+.+.++.+.|+|+||+|+| |.|
T Consensus 271 ~~~~~~~~~~~y~~p~-~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~~~~t~D~~PiI 349 (407)
T TIGR01373 271 DTVVMSNAVHFYVSQS-DKGELVIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFPILSRVRMLRSWGGIVDVTPDGSPII 349 (407)
T ss_pred CCeEEeCCCceEEEEc-CCceEEEecCCCCCCccCcCCCHHHHHHHHHHHHHhCCCcCCCCeEEEeccccccCCCCCcee
Confidence 33443 3345899998 778899998754 333444556788999999999999999888999999999999999 888
Q ss_pred eeEEeCCCee------ccceeecHHHHHHHHHHHHH
Q psy1702 163 ECEQTPGGKV------NAGVGVVVGRKKRLTDLLLT 192 (200)
Q Consensus 163 ~~~~~~~g~~------~~G~~~a~~~A~~~a~li~~ 192 (200)
+..+. +|++ .+|+++++++|+.++++|.+
T Consensus 350 g~~~~-~gl~~a~G~~g~G~~~ap~~G~~la~li~~ 384 (407)
T TIGR01373 350 GKTPL-PNLYLNCGWGTGGFKATPASGTVFAHTLAR 384 (407)
T ss_pred CCCCC-CCeEEEeccCCcchhhchHHHHHHHHHHhC
Confidence 87542 4544 36888999999999999864
No 7
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.79 E-value=1.9e-18 Score=153.67 Aligned_cols=166 Identities=13% Similarity=0.168 Sum_probs=123.8
Q ss_pred HHHHHcCcEEEEE-eccccccc-------------cC-----CCCEEEEcCCCCcccccC----CCCceeecceEEEEeC
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL-------------GS-----EYNTIFNCTGLGARTLCN----DMHVIPVRGQTIRIKA 83 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~-------------~g-----~ad~VV~AaG~~s~~L~~----~~pl~p~rGq~~~~~~ 83 (200)
..++++|++++.. +|+++... .+ .|+.||||||+|+..|.. ++|+.|.||++++++.
T Consensus 136 ~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~i~p~kG~~lv~~~ 215 (516)
T TIGR03377 136 LDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDIRMFPAKGALLIMNH 215 (516)
T ss_pred HHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCCCceecceEEEEEECC
Confidence 7888899999874 67665321 11 789999999999999853 6899999999999975
Q ss_pred CCcce----EEecCCeEEEEeCCCCCeEEEccceecC--CCCCCCChHHHHHHHHHHHhhCCCCCCCCCcceeEeecCCC
Q psy1702 84 PHITN----FYKNEYDTYIIPNGFDSLVTLGGTQNFG--HVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHR 157 (200)
Q Consensus 84 ~~~~~----~i~~~~~~y~~p~~~~g~~~iG~t~~~~--~~~~~~~~~~~~~ll~~~~~~~P~l~~~~v~~~w~G~Rp~t 157 (200)
+.... +.....+.|++|. .+ .+++|+|.+.. .++..++.+.++.+++.+.+++|.+...++++.|+|+||..
T Consensus 216 ~~~~~~~~~~~~~~~g~~~~P~-~~-~~liGtT~~~~~~~~~~~~~~~~v~~ll~~~~~~~P~l~~~~i~~~~aGvRPl~ 293 (516)
T TIGR03377 216 RINNTVINRCRKPSDADILVPG-DT-ISIIGTTSERIDDPDDLPVTQEEVDVLLREGAKLAPMLAQTRILRAFAGVRPLV 293 (516)
T ss_pred cccccccccccCCCCCcEEEEC-CC-eEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhCcccccCCEEEEEeeccccc
Confidence 32111 1112223688897 54 48999997642 24567889999999999999999999999999999999976
Q ss_pred CC---c----------eeeeE--EeCCCeec---cceeecHHHHHHHHHHHHHHh
Q psy1702 158 YR---V----------RVECE--QTPGGKVN---AGVGVVVGRKKRLTDLLLTFN 194 (200)
Q Consensus 158 pD---~----------~i~~~--~~~~g~~~---~G~~~a~~~A~~~a~li~~~~ 194 (200)
.+ + +++.. ...+|++. +++|+++.+|+.++|++.+..
T Consensus 294 ~~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GGkltt~r~~Ae~~~d~~~~~l 348 (516)
T TIGR03377 294 AVDDDPSGRNISRGIVLLDHAERDGLPGFITITGGKLTTYRLMAEWATDVVCKKL 348 (516)
T ss_pred CCCCCCCccccCCCeEEeecccccCCCCeEEEecchHHHHHHHHHHHHHHHHHHc
Confidence 43 1 22211 11256654 679999999999999998874
No 8
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.77 E-value=4.6e-18 Score=146.80 Aligned_cols=164 Identities=18% Similarity=0.275 Sum_probs=121.5
Q ss_pred HHHHHcCcEEEEE-eccccccc----------c-----C--CCCEEEEcCCCCcccccC----CCCceeecceEEEEeCC
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL----------G-----S--EYNTIFNCTGLGARTLCN----DMHVIPVRGQTIRIKAP 84 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~----------~-----g--~ad~VV~AaG~~s~~L~~----~~pl~p~rGq~~~~~~~ 84 (200)
+++++.|+++++. +|++++.. . + .+|+||+|+|+|+..|.. .+|+.|+|||++.++.+
T Consensus 205 ~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~~~i~p~~g~~~~~~~~ 284 (410)
T PRK12409 205 AACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDRVNVYPVKGYSITVNLD 284 (410)
T ss_pred HHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCCCccccCCceEEEeecC
Confidence 7888899999984 67766431 1 1 589999999999988752 47899999999877532
Q ss_pred C------cceE-EecCCeEEEEe-CCCCCeEEEccceecCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCcceeEeecCC
Q psy1702 85 H------ITNF-YKNEYDTYIIP-NGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPH 156 (200)
Q Consensus 85 ~------~~~~-i~~~~~~y~~p-~~~~g~~~iG~t~~~~~~~~~~~~~~~~~ll~~~~~~~P~l~~~~v~~~w~G~Rp~ 156 (200)
. ...+ +.++. .|+.+ +..++++++|++.+..+.+..++.+..+.+++.+.++||.+.+..+. .|+|+||+
T Consensus 285 ~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~igg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~-~w~G~r~~ 362 (410)
T PRK12409 285 DEASRAAAPWVSLLDDS-AKIVTSRLGADRFRVAGTAEFNGYNRDIRADRIRPLVDWVRRNFPDVSTRRVV-PWAGLRPM 362 (410)
T ss_pred CccccccCCceeeeecC-CcEEEEecCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCCCccccc-eecccCCC
Confidence 1 1112 22322 33333 11345588999888766677778889999999999999999887766 79999999
Q ss_pred CCC--ceeeeEEeCCCe------eccceeecHHHHHHHHHHHHHH
Q psy1702 157 RYR--VRVECEQTPGGK------VNAGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 157 tpD--~~i~~~~~~~g~------~~~G~~~a~~~A~~~a~li~~~ 193 (200)
|+| |+|++.+ .+|+ ...|+++++++|+.+++++.+.
T Consensus 363 t~D~~PiiG~~~-~~~l~~~~G~~~~G~~~ap~~g~~lA~~i~~~ 406 (410)
T PRK12409 363 MPNMMPRVGRGR-RPGVFYNTGHGHLGWTLSAATADLVAQVVAQK 406 (410)
T ss_pred CCCCCCeeCCCC-CCCEEEecCCcccchhhcccHHHHHHHHHcCC
Confidence 999 8888743 2443 3368889999999999998653
No 9
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.77 E-value=6.2e-18 Score=149.89 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=125.8
Q ss_pred HHHHHcCcEEEEE-ecccccccc-----------C-----CCCEEEEcCCCCcccccC-------CCCceeecceEEEEe
Q psy1702 27 VLFKTAGGKVIEK-YISSFSELG-----------S-----EYNTIFNCTGLGARTLCN-------DMHVIPVRGQTIRIK 82 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~~-----------g-----~ad~VV~AaG~~s~~L~~-------~~pl~p~rGq~~~~~ 82 (200)
..++++|++++.. +|+++.... + .|+.||||+|+|+..+.. ..++.|.||++++++
T Consensus 163 ~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v~p~kG~~lv~~ 242 (502)
T PRK13369 163 LDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNVRLVKGSHIVVP 242 (502)
T ss_pred HHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCcceEEeeEEEEEeC
Confidence 6788899999984 777654311 1 689999999999998743 246999999999986
Q ss_pred CCCc-ce-EEe--cCC-eEEEEeCCCCCeEEEccceecC--C-CCCCCChHHHHHHHHHHHhhCC-CCCCCCCcceeEee
Q psy1702 83 APHI-TN-FYK--NEY-DTYIIPNGFDSLVTLGGTQNFG--H-VNRCVESTDTESILARTEELLP-GVGACGGGQCWVGL 153 (200)
Q Consensus 83 ~~~~-~~-~i~--~~~-~~y~~p~~~~g~~~iG~t~~~~--~-~~~~~~~~~~~~ll~~~~~~~P-~l~~~~v~~~w~G~ 153 (200)
.... .. .+. .++ .+|++|+ .++.+++|+|.... + ++..++.+.++.+++.+.++|| .+...++++.|+|+
T Consensus 243 ~~~~~~~~~~~~~~dgr~~~i~P~-~~~~~liGtTd~~~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~~~i~~~waGl 321 (502)
T PRK13369 243 KFWDGAQAYLFQNPDKRVIFANPY-EGDFTLIGTTDIAYEGDPEDVAADEEEIDYLLDAANRYFKEKLRREDVVHSFSGV 321 (502)
T ss_pred CccCCCceEEEeCCCCeEEEEEEe-cCCEEEEEecCccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCHhHEEEEeece
Confidence 5321 11 222 233 4689999 77778899987542 2 4678899999999999999997 89889999999999
Q ss_pred cCCCCC----ce-eeeEE--------eCCCeec---cceeecHHHHHHHHHHHHHHhh
Q psy1702 154 RPHRYR----VR-VECEQ--------TPGGKVN---AGVGVVVGRKKRLTDLLLTFNA 195 (200)
Q Consensus 154 Rp~tpD----~~-i~~~~--------~~~g~~~---~G~~~a~~~A~~~a~li~~~~~ 195 (200)
||.++| +. +.++. ..+|++. +|||++++||+.++|++.+...
T Consensus 322 RPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~i~Ggk~Tt~r~~Ae~v~d~~~~~l~ 379 (502)
T PRK13369 322 RPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLSVFGGKITTFRKLAEHALERLKPFFP 379 (502)
T ss_pred EEcCCCCCCCcccCCcceEEeeccccCCCCeEEEeCChHhhHHHHHHHHHHHHHHhcC
Confidence 999975 11 22211 1145543 7899999999999999998754
No 10
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.76 E-value=7.2e-18 Score=143.65 Aligned_cols=164 Identities=15% Similarity=0.142 Sum_probs=122.3
Q ss_pred HHHHHcCcEEEEE-eccccccc---------cC--CCCEEEEcCCCCcccccC--CCCceeecceEEEEeCC-C----cc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL---------GS--EYNTIFNCTGLGARTLCN--DMHVIPVRGQTIRIKAP-H----IT 87 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~---------~g--~ad~VV~AaG~~s~~L~~--~~pl~p~rGq~~~~~~~-~----~~ 87 (200)
+++.++|++++.. +|+++... .+ .+|.||+|+|.|+..|+. .+|+.|.|+|++.++++ . ..
T Consensus 157 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 236 (376)
T PRK11259 157 RLAREAGAELLFNEPVTAIEADGDGVTVTTADGTYEAKKLVVSAGAWVKDLLPPLELPLTPVRQVLAWFQADGRYSEPNR 236 (376)
T ss_pred HHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCCEEEeeEEEEecCcchhhhcccccCCceEEEEEEEEEecCCccCCccC
Confidence 6677889999874 67776542 12 899999999999999876 68999999999988753 1 11
Q ss_pred -eEEe---cC-CeEEEEeCCCCCe-EEEccceecC------CCCCCCC-hHHHHHHHHHHHhhCCCCCCCCCcceeEeec
Q psy1702 88 -NFYK---NE-YDTYIIPNGFDSL-VTLGGTQNFG------HVNRCVE-STDTESILARTEELLPGVGACGGGQCWVGLR 154 (200)
Q Consensus 88 -~~i~---~~-~~~y~~p~~~~g~-~~iG~t~~~~------~~~~~~~-~~~~~~ll~~~~~~~P~l~~~~v~~~w~G~R 154 (200)
+.+. .+ ..+|++|. .+++ +++|++.... +.+...+ .+..+.+++.+.++||.+.. +.+.|+|+|
T Consensus 237 ~p~~~~~~~~~~~~y~~p~-~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~--~~~~~~g~~ 313 (376)
T PRK11259 237 FPAFIWEVPDGDQYYGFPA-ENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELRPFLRNYLPGVGP--CLRGAACTY 313 (376)
T ss_pred CCEEEEecCCCceeEeccC-CCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHHHHHHHHCCCCCc--cccceEEec
Confidence 1111 22 33788898 7777 9999876511 1112222 56688999999999998875 889999999
Q ss_pred CCCCC--ceeeeEEeCCCeec------cceeecHHHHHHHHHHHHHH
Q psy1702 155 PHRYR--VRVECEQTPGGKVN------AGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 155 p~tpD--~~i~~~~~~~g~~~------~G~~~a~~~A~~~a~li~~~ 193 (200)
|+||| |.|+..+..+|.+. +|+++++++|+.++++|.+.
T Consensus 314 ~~t~D~~P~ig~~~~~~gl~~~~G~~g~G~~~ap~~g~~la~li~~~ 360 (376)
T PRK11259 314 TNTPDEHFIIDTLPGHPNVLVASGCSGHGFKFASVLGEILADLAQDG 360 (376)
T ss_pred ccCCCCCceeecCCCCCCEEEEecccchhhhccHHHHHHHHHHHhcC
Confidence 99999 88887544455543 68889999999999999764
No 11
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.76 E-value=1.6e-17 Score=148.61 Aligned_cols=166 Identities=13% Similarity=0.185 Sum_probs=122.1
Q ss_pred HHHHHcCcEEEEE-eccccccc-------------c---C--CCCEEEEcCCCCcccccC----CCCceeecceEEEEeC
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL-------------G---S--EYNTIFNCTGLGARTLCN----DMHVIPVRGQTIRIKA 83 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~-------------~---g--~ad~VV~AaG~~s~~L~~----~~pl~p~rGq~~~~~~ 83 (200)
..|+++|++++.. +|+++... . + .|+.||||||+|+..|.. ++|+.|.|||+++++.
T Consensus 157 ~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~~i~p~kG~~lv~~~ 236 (546)
T PRK11101 157 LDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDH 236 (546)
T ss_pred HHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCCceeecceEEEEECC
Confidence 6778899999884 77765321 1 1 799999999999998853 5899999999999976
Q ss_pred CCcceEEe----cCCeEEEEeCCCCCeEEEccceecCC----CCCCCChHHHHHHHHHHHhhCCCCCCCCCcceeEeecC
Q psy1702 84 PHITNFYK----NEYDTYIIPNGFDSLVTLGGTQNFGH----VNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRP 155 (200)
Q Consensus 84 ~~~~~~i~----~~~~~y~~p~~~~g~~~iG~t~~~~~----~~~~~~~~~~~~ll~~~~~~~P~l~~~~v~~~w~G~Rp 155 (200)
.....++. .....|++|. ++.+++|+|.+..+ .+..++.+.++.+++.+.+++|.|...++++.|+|+||
T Consensus 237 ~~~~~vi~~~~~~~~~~~~vp~--~~~~liGtT~~~~~~~~~~~~~~t~~~i~~Ll~~~~~l~P~l~~~~i~~~~aGvRP 314 (546)
T PRK11101 237 RINNHVINRCRKPADADILVPG--DTISLIGTTSTRIDYDQIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYAGVRP 314 (546)
T ss_pred ccCceeEeccCCCCCCCEEEec--CCEEEEeeCCCCccCCCcCCCCCCHHHHHHHHHHHHHhCCCCCccCEEEEEEEecc
Confidence 32222221 1122467776 45589999875422 23678899999999999999999999999999999999
Q ss_pred CCC--C-c----------eeeeEE--eCCCeec---cceeecHHHHHHHHHHHHHHh
Q psy1702 156 HRY--R-V----------RVECEQ--TPGGKVN---AGVGVVVGRKKRLTDLLLTFN 194 (200)
Q Consensus 156 ~tp--D-~----------~i~~~~--~~~g~~~---~G~~~a~~~A~~~a~li~~~~ 194 (200)
... + + +++... ..+|++. +++++++.+|+.++|++.+..
T Consensus 315 l~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GGkltt~r~~Ae~v~d~v~~~l 371 (546)
T PRK11101 315 LVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKL 371 (546)
T ss_pred CCCCCCCCcccccCCCeEEeecccccCCCCeEEEECChHHHHHHHHHHHHHHHHHhc
Confidence 843 2 2 222111 1256654 668888899999999998764
No 12
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.75 E-value=1.3e-17 Score=142.35 Aligned_cols=165 Identities=25% Similarity=0.357 Sum_probs=125.7
Q ss_pred HHHHHcCcEEEE--Eeccccccc---------cC--CCCEEEEcCCCCcccccC-----CCCceeecceEEEEeCCC-c-
Q psy1702 27 VLFKTAGGKVIE--KYISSFSEL---------GS--EYNTIFNCTGLGARTLCN-----DMHVIPVRGQTIRIKAPH-I- 86 (200)
Q Consensus 27 ~~~~~~Gv~~~~--~~V~~l~~~---------~g--~ad~VV~AaG~~s~~L~~-----~~pl~p~rGq~~~~~~~~-~- 86 (200)
++++++|+..+. ..|..++.. .+ .+|+||+|+|+|+..+.. .+|+.|+|||++.++++. .
T Consensus 164 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~i~a~~vv~a~G~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 243 (387)
T COG0665 164 AAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGTIEADKVVLAAGAWAGELAATLGELPLPLRPVRGQALTTEPPEGLL 243 (387)
T ss_pred HHHHhcCCeEEEccceEEEEEecCcEEEEEeCCccEEeCEEEEcCchHHHHHHHhcCCCcCccccccceEEEecCCCccc
Confidence 788889965554 356665542 12 799999999999998752 368999999999998742 1
Q ss_pred c------eEEecCCeEEEEeCCCCCeEEEccceecC-CCCCCCChHH--HHHHHHHHHhhCCCCCCCCCcceeEeecCCC
Q psy1702 87 T------NFYKNEYDTYIIPNGFDSLVTLGGTQNFG-HVNRCVESTD--TESILARTEELLPGVGACGGGQCWVGLRPHR 157 (200)
Q Consensus 87 ~------~~i~~~~~~y~~p~~~~g~~~iG~t~~~~-~~~~~~~~~~--~~~ll~~~~~~~P~l~~~~v~~~w~G~Rp~t 157 (200)
. .........|++|. .++++++|++.+.. +++....... ...+++.+.+++|.+.+..+.+.|+|+||+|
T Consensus 244 ~~~~~~~~~~~~~~~~y~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~g~~~~t 322 (387)
T COG0665 244 ADGLAPVVLVVDDGGGYIRPR-GDGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPGLADAGIEAAWAGLRPPT 322 (387)
T ss_pred cccccceEEEecCCceEEEEc-CCCcEEEeecccccCCCCccccCcchhHHHHHHHHHHhCccccccccceeeeccccCC
Confidence 1 11223345899998 78889999998765 3444333333 7899999999999999999999999999987
Q ss_pred -CC--ceeee-EEeCCC------eeccceeecHHHHHHHHHHHHHH
Q psy1702 158 -YR--VRVEC-EQTPGG------KVNAGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 158 -pD--~~i~~-~~~~~g------~~~~G~~~a~~~A~~~a~li~~~ 193 (200)
|| |.|+. .+ .+| +..+|+++++++|+.+|++|.+.
T Consensus 323 ~pd~~P~iG~~~~-~~~l~~a~G~~~~G~~~~p~~g~~lA~li~g~ 367 (387)
T COG0665 323 TPDGLPVIGRAAP-LPNLYVATGHGGHGFTLAPALGRLLADLILGG 367 (387)
T ss_pred CCCCCceeCCCCC-CCCEEEEecCCCcChhhccHHHHHHHHHHcCC
Confidence 99 88885 44 444 44478999999999999999874
No 13
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.74 E-value=1.4e-17 Score=141.68 Aligned_cols=155 Identities=16% Similarity=0.196 Sum_probs=108.2
Q ss_pred HHHHHc-CcEEEEE-eccccccc-----cC--CCCEEEEcCCCCcccccC----CCCceeecceEEEEeCCC---cceE-
Q psy1702 27 VLFKTA-GGKVIEK-YISSFSEL-----GS--EYNTIFNCTGLGARTLCN----DMHVIPVRGQTIRIKAPH---ITNF- 89 (200)
Q Consensus 27 ~~~~~~-Gv~~~~~-~V~~l~~~-----~g--~ad~VV~AaG~~s~~L~~----~~pl~p~rGq~~~~~~~~---~~~~- 89 (200)
+++++. |+++++. +|++++.. .+ .||+||||+|+|+..|+. .+|+.|+|||++++++.. +.+.
T Consensus 153 ~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g~i~a~~VV~A~G~~s~~l~~~~~~~~~~~p~~~q~~~~~p~~~~~~~~~~ 232 (365)
T TIGR03364 153 AYLAEQHGVEFHWNTAVTSVETGTVRTSRGDVHADQVFVCPGADFETLFPELFAASGVRRCKLQMMRTAPQPRLPLGTAL 232 (365)
T ss_pred HHHHhcCCCEEEeCCeEEEEecCeEEeCCCcEEeCEEEECCCCChhhhCcchhhccCcceEEEEeeeccCCCCCcCCccc
Confidence 556665 9999884 77776432 23 799999999999998864 478999999999987631 1100
Q ss_pred -------------------------------Eec-CCeEEEEeCCCCCeEEEccceecCCCCCCC-ChHHHHHHHHHHHh
Q psy1702 90 -------------------------------YKN-EYDTYIIPNGFDSLVTLGGTQNFGHVNRCV-ESTDTESILARTEE 136 (200)
Q Consensus 90 -------------------------------i~~-~~~~y~~p~~~~g~~~iG~t~~~~~~~~~~-~~~~~~~ll~~~~~ 136 (200)
+.. ....|++|. .+|++++|++.+.+..+... +.+..+.+.+.+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~iG~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (365)
T TIGR03364 233 LTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQN-PDGELIIGDSHEYGLAPDPFDDEEIDNLILAEAKT 311 (365)
T ss_pred cccceeeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEEC-CCCCEEecCcccccCCCCCcchHHHHHHHHHHHHH
Confidence 011 124789999 88889999998764333222 33444556666766
Q ss_pred hCCCCCCCCCcceeEeecCCCCC-ceeeeEEeCCCee------ccceeecHHHHH
Q psy1702 137 LLPGVGACGGGQCWVGLRPHRYR-VRVECEQTPGGKV------NAGVGVVVGRKK 184 (200)
Q Consensus 137 ~~P~l~~~~v~~~w~G~Rp~tpD-~~i~~~~~~~g~~------~~G~~~a~~~A~ 184 (200)
++ .+.+.++.+.|+|+||+|+| +++.... .+|.+ .+|+++++++|+
T Consensus 312 ~~-~l~~~~~~~~w~G~r~~t~d~~~v~~~~-~~g~~~a~G~~g~G~~~ap~~~~ 364 (365)
T TIGR03364 312 IL-GLPDLDIVERWQGVYASSPPAPIFLERP-DDGVTVVVVTSGAGMTLSFGLAE 364 (365)
T ss_pred hc-CCCCCceEEEEeEEecCCCCCCceecCC-CCCeEEEEecCCCcccccccccC
Confidence 65 68888999999999999999 6554322 24543 367888888775
No 14
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.74 E-value=4.7e-17 Score=142.85 Aligned_cols=166 Identities=11% Similarity=0.059 Sum_probs=119.8
Q ss_pred HHHHHcCcEEEEE-eccccccc--------cC--CCCEEEEcCCCCcccccC--CCCceeecceEEEEeCCC--cc----
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL--------GS--EYNTIFNCTGLGARTLCN--DMHVIPVRGQTIRIKAPH--IT---- 87 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~--------~g--~ad~VV~AaG~~s~~L~~--~~pl~p~rGq~~~~~~~~--~~---- 87 (200)
++++++|++|+++ +|++++.. .+ .||.||+|+|.|+..++. ..++.|+++|++++++.. ..
T Consensus 191 ~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g~v~A~~VV~Atga~s~~l~~~~~~~~~p~~~~~~~t~pl~~~~~~~~~ 270 (460)
T TIGR03329 191 RVALELGVEIHENTPMTGLEEGQPAVVRTPDGQVTADKVVLALNAWMASHFPQFERSIAIVSSDMVITEPAPDLLAATGL 270 (460)
T ss_pred HHHHHcCCEEECCCeEEEEeeCCceEEEeCCcEEECCEEEEcccccccccChhhcCeEEEeccceEecCCCcHHHHhhcC
Confidence 7788899999984 67766432 23 899999999999998865 457889999998887621 11
Q ss_pred --e-EEecCC--eEEEEeCCCCCeEEEccceec---CCC-C--CCCChHHHHHHHHHHHhhCCCCCCCCCcceeEeecCC
Q psy1702 88 --N-FYKNEY--DTYIIPNGFDSLVTLGGTQNF---GHV-N--RCVESTDTESILARTEELLPGVGACGGGQCWVGLRPH 156 (200)
Q Consensus 88 --~-~i~~~~--~~y~~p~~~~g~~~iG~t~~~---~~~-~--~~~~~~~~~~ll~~~~~~~P~l~~~~v~~~w~G~Rp~ 156 (200)
. .+.+.. ..|++|. .+|++++|+.... ++. + ........+.+.+.+.++||.|.+.++...|+|+|++
T Consensus 271 ~~~~~~~d~~~~~~y~r~~-~dgrll~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~fP~L~~~~i~~~W~G~~~~ 349 (460)
T TIGR03329 271 DHGTSVLDSRIFVHYYRST-PDGRLMLGKGGNTFAYGGRMLPVFNQPSPYEALLTRSLRKFFPALAEVPIAASWNGPSDR 349 (460)
T ss_pred CCCceEecchhhhhheeEC-CCCcEEEcCCccccccCcccccccCCchHHHHHHHHHHHHhCCCcCCCeeeEEEeceeCC
Confidence 1 122222 2588998 7888999975321 111 1 1122334677889999999999999999999999999
Q ss_pred CCC--ceeeeEEeCCCeec------cceeecHHHHHHHHHHHHHH
Q psy1702 157 RYR--VRVECEQTPGGKVN------AGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 157 tpD--~~i~~~~~~~g~~~------~G~~~a~~~A~~~a~li~~~ 193 (200)
|+| |.|+..+..+|.+. +|+++++.+|+.++|+|.+.
T Consensus 350 t~D~~P~iG~~~~~~gl~~a~G~~G~Gv~~a~~~G~~lA~li~g~ 394 (460)
T TIGR03329 350 SVTGLPFFGRLNGQPNVFYGFGYSGNGVAPSRMGGQILSSLVLGL 394 (460)
T ss_pred CCCCCceeeeecCCCCEEEEeCcCCCChhHHHHHHHHHHHHhcCC
Confidence 999 88887643355543 56667777999999999764
No 15
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.73 E-value=4.9e-17 Score=147.43 Aligned_cols=165 Identities=15% Similarity=0.175 Sum_probs=124.2
Q ss_pred HHHHHcCcEEEEE-eccccccc---------------cC-----CCCEEEEcCCCCcccccC-----CC-CceeecceEE
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL---------------GS-----EYNTIFNCTGLGARTLCN-----DM-HVIPVRGQTI 79 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~---------------~g-----~ad~VV~AaG~~s~~L~~-----~~-pl~p~rGq~~ 79 (200)
..++++|++++.. +|+++... .+ .+|.||||+|+|+..|.. .. +|.|.||+++
T Consensus 240 ~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~~~~~I~p~kG~hl 319 (627)
T PLN02464 240 CTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGKAKPMICPSSGVHI 319 (627)
T ss_pred HHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCcCCCceEeeeeEEE
Confidence 8888899999885 67765321 11 789999999999998842 23 4999999999
Q ss_pred EEeC---CCcceEEe----cCCeEEEEeCCCCCeEEEccceec--CCCCCCCChHHHHHHHHHHHhhCC-CCCCCCCcce
Q psy1702 80 RIKA---PHITNFYK----NEYDTYIIPNGFDSLVTLGGTQNF--GHVNRCVESTDTESILARTEELLP-GVGACGGGQC 149 (200)
Q Consensus 80 ~~~~---~~~~~~i~----~~~~~y~~p~~~~g~~~iG~t~~~--~~~~~~~~~~~~~~ll~~~~~~~P-~l~~~~v~~~ 149 (200)
+++. +....+++ +++.+|++|+ .+. +++|+|.+. .+.+..++.+.++.|++.++++|| .+...++++.
T Consensus 320 vl~~~~~~~~~~~i~~~~~dgr~~~~~P~-~g~-~liGtTd~~~~~~~~~~~t~~ei~~Ll~~a~~~~~~~l~~~~v~~~ 397 (627)
T PLN02464 320 VLPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGR-TVAGTTDSKTPITMLPEPHEDEIQFILDAISDYLNVKVRRSDVLSA 397 (627)
T ss_pred ecccccCCCCceEEecCCCCCCEEEEEec-CCc-EEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCChhhEEEE
Confidence 8864 21112333 2345899998 555 999998765 335667788999999999999999 7888899999
Q ss_pred eEeecCCCCC--cee----eeEEe----CCCeec---cceeecHHHHHHHHHHHHHH
Q psy1702 150 WVGLRPHRYR--VRV----ECEQT----PGGKVN---AGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 150 w~G~Rp~tpD--~~i----~~~~~----~~g~~~---~G~~~a~~~A~~~a~li~~~ 193 (200)
|+|+||.++| +.+ .++.. ..|++. +.||+++.+|+.++|.+.+.
T Consensus 398 waG~RPl~~d~~~~~~~~~sr~~~i~~~~~gli~i~GGk~Tt~R~mAe~~~d~~~~~ 454 (627)
T PLN02464 398 WSGIRPLAVDPSAKSTESISRDHVVCEEPDGLVTITGGKWTTYRSMAEDAVDAAIKS 454 (627)
T ss_pred EEeEEeeccCCCCCcccccCCceEEEecCCCeEEEECChHHHHHHHHHHHHHHHHHh
Confidence 9999999988 222 22211 145543 66999999999999998874
No 16
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.72 E-value=1.1e-17 Score=140.34 Aligned_cols=160 Identities=23% Similarity=0.337 Sum_probs=114.8
Q ss_pred HHHHHcCcEEEEE-ecccccccc----------C--CCCEEEEcCCCCcccccC----CCCceeecceEEEEeCCC--cc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSELG----------S--EYNTIFNCTGLGARTLCN----DMHVIPVRGQTIRIKAPH--IT 87 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~~----------g--~ad~VV~AaG~~s~~L~~----~~pl~p~rGq~~~~~~~~--~~ 87 (200)
+.++++|++++.. +|++|.... + .||.||||+|+|+..|+. ++|+.|.+|+++.+++.. ..
T Consensus 155 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~i~ad~vV~a~G~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
T PF01266_consen 155 AEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGEIRADRVVLAAGAWSPQLLPLLGLDLPLRPVRGQVLVLEPPESPLA 234 (358)
T ss_dssp HHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEEEEECEEEE--GGGHHHHHHTTTTSSTEEEEEEEEEEEEGCCSGSS
T ss_pred HHHHHhhhhccccccccchhhcccccccccccccccccceeEecccccceeeeecccccccccccceEEEEEccCCcccc
Confidence 8888999999995 888876432 2 799999999999999753 349999999999998732 21
Q ss_pred e-EEe------cCCeEEEEeCCCCCeEEEcccee---cCCC-------CCCCChHHHHHHHHHHHhhCCCCCCCCCccee
Q psy1702 88 N-FYK------NEYDTYIIPNGFDSLVTLGGTQN---FGHV-------NRCVESTDTESILARTEELLPGVGACGGGQCW 150 (200)
Q Consensus 88 ~-~i~------~~~~~y~~p~~~~g~~~iG~t~~---~~~~-------~~~~~~~~~~~ll~~~~~~~P~l~~~~v~~~w 150 (200)
+ +.. .....|++|+ . +.+++|.+.. .... +...+.+ .+.+++.+.+++|.+.+.++.+.|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~p~-~-g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~p~l~~~~v~~~~ 311 (358)
T PF01266_consen 235 PAILFPPVIFGPSDGVYIRPR-P-GGVLIGTADGNYDPGPSPEDSSGEDPDVDEE-IDELLERLARLLPGLGDAEVVRSW 311 (358)
T ss_dssp SEEEEEEECESSCTEEEEEEE-T-TEEEEEESECEEEESSSHHHHSHHHHHHHHH-HHHHHHHHHHHSGGGGGSEEEEEE
T ss_pred cccccccccccccccceeccc-c-cccccccccccccccccccccccccccccHH-HHHhHHHHHHHHHHhhhccccccc
Confidence 1 211 1245889999 6 6589994321 1110 0112223 678999999999999999999999
Q ss_pred EeecCCCCC--ceeeeEEeCCC------eeccceeecHHHHHHHHHH
Q psy1702 151 VGLRPHRYR--VRVECEQTPGG------KVNAGVGVVVGRKKRLTDL 189 (200)
Q Consensus 151 ~G~Rp~tpD--~~i~~~~~~~g------~~~~G~~~a~~~A~~~a~l 189 (200)
+|+||+|+| |.++..+..+| +...|+++++++|+.+||+
T Consensus 312 ~g~r~~t~d~~p~ig~~~~~~~l~~~~g~~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 312 AGIRPFTPDGRPIIGELPGSPNLYLAGGHGGHGFTLAPGLAELLADL 358 (358)
T ss_dssp EEEEEEETTSECEEEEESSEEEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred cceeeeccCCCeeeeecCCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 999999999 77776432234 3346788899999999986
No 17
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.72 E-value=1.1e-16 Score=142.02 Aligned_cols=168 Identities=10% Similarity=0.111 Sum_probs=125.1
Q ss_pred HHHHHcCcEEEEE-eccccccc------------cC-----CCCEEEEcCCCCcccccC-------CCCceeecceEEEE
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL------------GS-----EYNTIFNCTGLGARTLCN-------DMHVIPVRGQTIRI 81 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~------------~g-----~ad~VV~AaG~~s~~L~~-------~~pl~p~rGq~~~~ 81 (200)
..++++|++++.. +|+++... .+ .|+.||||+|+|+..+.. ..++.|.||+++++
T Consensus 163 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~i~p~kG~~lvl 242 (508)
T PRK12266 163 RDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPYGIRLVKGSHIVV 242 (508)
T ss_pred HHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCcceeeeeeEEEEE
Confidence 6788899999884 77766421 01 799999999999988742 34899999999998
Q ss_pred eCCC-cce-EEe---cCCeEEEEeCCCCCeEEEccceec---CCCCCCCChHHHHHHHHHHHhhCC-CCCCCCCcceeEe
Q psy1702 82 KAPH-ITN-FYK---NEYDTYIIPNGFDSLVTLGGTQNF---GHVNRCVESTDTESILARTEELLP-GVGACGGGQCWVG 152 (200)
Q Consensus 82 ~~~~-~~~-~i~---~~~~~y~~p~~~~g~~~iG~t~~~---~~~~~~~~~~~~~~ll~~~~~~~P-~l~~~~v~~~w~G 152 (200)
+... ... .+. +...+|++|+ .+++.++|+|... ...+..++.+.++.+++.+.+++| .+...++++.|+|
T Consensus 243 ~~~~~~~~~~~~~~~dgr~v~~~P~-~~g~~liGttd~~~~~~~~~~~~~~~~i~~Ll~~~~~~~p~~l~~~~ii~~waG 321 (508)
T PRK12266 243 PRLFDHDQAYILQNPDGRIVFAIPY-EDDFTLIGTTDVEYKGDPAKVAISEEEIDYLCKVVNRYFKKQLTPADVVWTYSG 321 (508)
T ss_pred CCcCCCCcEEEEeCCCCCEEEEEEe-CCCeEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCHHHEEEEeee
Confidence 6522 112 222 2345678999 7787999998653 224567889999999999999996 7888999999999
Q ss_pred ecCCCCC--ce---eeeEE--------eCCCeec---cceeecHHHHHHHHHHHHHHhh
Q psy1702 153 LRPHRYR--VR---VECEQ--------TPGGKVN---AGVGVVVGRKKRLTDLLLTFNA 195 (200)
Q Consensus 153 ~Rp~tpD--~~---i~~~~--------~~~g~~~---~G~~~a~~~A~~~a~li~~~~~ 195 (200)
+||.++| +. +.++. ..+|++. ++||+++.+|+.++|++.+...
T Consensus 322 ~RPl~~d~~~~~~~~sr~~~i~~~~~~g~~gli~v~Ggk~Tt~r~mAe~~~~~~~~~l~ 380 (508)
T PRK12266 322 VRPLCDDESDSAQAITRDYTLELDDENGGAPLLSVFGGKITTYRKLAEHALEKLAPYLP 380 (508)
T ss_pred eEeeCCCCCCCcccCCcceEEEecccCCCCCeEEEEcChHHHHHHHHHHHHHHHHHhcC
Confidence 9999987 31 21221 1245544 7799999999999999987743
No 18
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.69 E-value=7.6e-16 Score=131.37 Aligned_cols=165 Identities=13% Similarity=0.134 Sum_probs=119.5
Q ss_pred HHHHHcCcEEEEE-ecccccccc---------C--CCCEEEEcCCCCcccccC----CCCceeecceEEEEeCCC-----
Q psy1702 27 VLFKTAGGKVIEK-YISSFSELG---------S--EYNTIFNCTGLGARTLCN----DMHVIPVRGQTIRIKAPH----- 85 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~~---------g--~ad~VV~AaG~~s~~L~~----~~pl~p~rGq~~~~~~~~----- 85 (200)
+.+++.|++++.. +|++++... + .+|.||+|+|.|+..|.. ++|+.|.|+|+..+..+.
T Consensus 153 ~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~~i~a~~vV~aaG~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (380)
T TIGR01377 153 ELAEAHGATVRDGTKVVEIEPTELLVTVKTTKGSYQANKLVVTAGAWTSKLLSPLGIEIPLQPLRINVCYWREKEPGSYG 232 (380)
T ss_pred HHHHHcCCEEECCCeEEEEEecCCeEEEEeCCCEEEeCEEEEecCcchHHHhhhcccCCCceEEEEEEEEEecCCccccC
Confidence 6677889999884 687765421 2 789999999999988753 579999999987665321
Q ss_pred ----cceEEe-c-CCeEEEEeCCCC-CeEEEccceec-------CCCCCCCChHHHHHHHHHHHhhCCCCCCCCCcceeE
Q psy1702 86 ----ITNFYK-N-EYDTYIIPNGFD-SLVTLGGTQNF-------GHVNRCVESTDTESILARTEELLPGVGACGGGQCWV 151 (200)
Q Consensus 86 ----~~~~i~-~-~~~~y~~p~~~~-g~~~iG~t~~~-------~~~~~~~~~~~~~~ll~~~~~~~P~l~~~~v~~~w~ 151 (200)
.+.++. . ..++|++|. .+ +.+++|+.... .+++..++.+..+.+.+.+.+++|.+... ..+.|.
T Consensus 233 ~~~~~p~~~~~~~~~~~y~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~-~~~~~~ 310 (380)
T TIGR01377 233 VSQAFPCFLVLGLNPHIYGLPS-FEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQILRKFVRDHLPGLNGE-PKKGEV 310 (380)
T ss_pred ccCCCCEEEEeCCCCceEecCC-CCCCceEEEEeCCCCccCcccccCCCCCCHHHHHHHHHHHHHHCCCCCCC-cceeeE
Confidence 111222 2 234888987 43 23666653321 12233467788999999999999999853 367899
Q ss_pred eecCCCCC--ceeeeEEeCCCee------ccceeecHHHHHHHHHHHHHH
Q psy1702 152 GLRPHRYR--VRVECEQTPGGKV------NAGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 152 G~Rp~tpD--~~i~~~~~~~g~~------~~G~~~a~~~A~~~a~li~~~ 193 (200)
|+||+||| |+|+..+..+|++ .+|+++++++|+.++|+|.+.
T Consensus 311 ~~~~~t~D~~piIg~~p~~~~l~va~G~~g~G~~~~p~~g~~la~li~~~ 360 (380)
T TIGR01377 311 CMYTNTPDEHFVIDLHPKYDNVVIGAGFSGHGFKLAPVVGKILAELAMKL 360 (380)
T ss_pred EEeccCCCCCeeeecCCCCCCEEEEecCCccceeccHHHHHHHHHHHhcC
Confidence 99999999 8888875445544 368999999999999999764
No 19
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.67 E-value=3.9e-16 Score=134.27 Aligned_cols=163 Identities=15% Similarity=0.235 Sum_probs=115.6
Q ss_pred HHHHHcCcEEEEE-eccccccc---------cC--CCCEEEEcCCCCcccccC------CCCceeecceEEEEeCC---C
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL---------GS--EYNTIFNCTGLGARTLCN------DMHVIPVRGQTIRIKAP---H 85 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~---------~g--~ad~VV~AaG~~s~~L~~------~~pl~p~rGq~~~~~~~---~ 85 (200)
+++++.|++++.. +|.+++.. .+ .+|.||+|+|+|+..++. ++++.|.|||++.++.+ .
T Consensus 157 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p~rGq~~~~~~~~~~~ 236 (393)
T PRK11728 157 ELIQARGGEIRLGAEVTALDEHANGVVVRTTQGEYEARTLINCAGLMSDRLAKMAGLEPDFRIVPFRGEYYRLAPEKNQL 236 (393)
T ss_pred HHHHhCCCEEEcCCEEEEEEecCCeEEEEECCCEEEeCEEEECCCcchHHHHHHhCCCCCCceEEeeeEEEEeccccccc
Confidence 7778899999874 67766432 12 799999999999987742 37899999999998753 2
Q ss_pred cceEEe---c----CCeEEEEeCCCCCeEEEcccee--c--CCCCCC-C---------------------ChHHHHHH--
Q psy1702 86 ITNFYK---N----EYDTYIIPNGFDSLVTLGGTQN--F--GHVNRC-V---------------------ESTDTESI-- 130 (200)
Q Consensus 86 ~~~~i~---~----~~~~y~~p~~~~g~~~iG~t~~--~--~~~~~~-~---------------------~~~~~~~l-- 130 (200)
++++++ + ..+.|++|+ .+|++++|++.. . .+++.. . +.+.++++
T Consensus 237 ~~~~v~~~p~~~~~~~g~~~~p~-~~G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
T PRK11728 237 VNHLIYPVPDPAFPFLGVHLTRM-IDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMKN 315 (393)
T ss_pred cCCceecCCCCCCCcceEEeecC-CCCCEEECCCcceehhhcCccccCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence 344333 1 124899999 888899997432 2 223221 1 34445555
Q ss_pred -------HHHHHhhCCCCCCCCCcceeEeecC--CCCC--ceeeeE-EeCCCee------ccceeecHHHHHHHHHHH
Q psy1702 131 -------LARTEELLPGVGACGGGQCWVGLRP--HRYR--VRVECE-QTPGGKV------NAGVGVVVGRKKRLTDLL 190 (200)
Q Consensus 131 -------l~~~~~~~P~l~~~~v~~~w~G~Rp--~tpD--~~i~~~-~~~~g~~------~~G~~~a~~~A~~~a~li 190 (200)
++.+.+++|.|.+.++.+.|+|+|| +++| |.-+.. ...++.+ ..|+|.|+++|+.+++++
T Consensus 316 ~~~~~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~~~~~d~~~~~d~~i~~~~~~~~~~~~~spg~t~s~~ia~~v~~~~ 393 (393)
T PRK11728 316 SLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVDDFLFVETPRSLHVCNAPSPAATSSLPIGEHIVSKV 393 (393)
T ss_pred hhhHHHHHHHHHHhCCCCCHHHcccCCCceeeeeeCCCCCccCceEEecCCCEEEEcCCCCchHHccHHHHHHHHhhC
Confidence 5999999999999999999999999 8898 322211 0113432 279999999999999864
No 20
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.61 E-value=6.4e-15 Score=129.50 Aligned_cols=168 Identities=13% Similarity=0.174 Sum_probs=127.8
Q ss_pred HHHHHcCcEEEEE-ecccccccc------------C-----CCCEEEEcCCCCcccccC------C--CCceeecceEEE
Q psy1702 27 VLFKTAGGKVIEK-YISSFSELG------------S-----EYNTIFNCTGLGARTLCN------D--MHVIPVRGQTIR 80 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~~------------g-----~ad~VV~AaG~~s~~L~~------~--~pl~p~rGq~~~ 80 (200)
..|..+|++++.. +|+++.... | +|+.||||||+|+.++.. . ..|.|.||.+++
T Consensus 172 ~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsHlV 251 (532)
T COG0578 172 RDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSHLV 251 (532)
T ss_pred HHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceEEE
Confidence 7788899999884 677654321 2 799999999999999853 1 359999999999
Q ss_pred EeC--CCcceEEe----cCCeEEEEeCCCCCeEEEccceec--C-CCCCCCChHHHHHHHHHHH-hhCCCCCCCCCccee
Q psy1702 81 IKA--PHITNFYK----NEYDTYIIPNGFDSLVTLGGTQNF--G-HVNRCVESTDTESILARTE-ELLPGVGACGGGQCW 150 (200)
Q Consensus 81 ~~~--~~~~~~i~----~~~~~y~~p~~~~g~~~iG~t~~~--~-~~~~~~~~~~~~~ll~~~~-~~~P~l~~~~v~~~w 150 (200)
++. +....++. +....+++|+ .+. +++|+|... + ..+..++.++++.|++.++ .+-|.+...+|.+.|
T Consensus 252 v~~~~~~~~a~~~~~~~d~r~~f~iP~-~~~-~liGTTD~~~~~~~~~~~~~~eEidyll~~~~~~~~~~l~~~dI~~sy 329 (532)
T COG0578 252 VDKKFPINQAVINRCRKDGRIVFAIPY-EGK-TLIGTTDTDYDGDPEDPRITEEEIDYLLDAVNRYLAPPLTREDILSTY 329 (532)
T ss_pred ecccCCCCceEEeecCCCCceEEEecC-CCC-EEeeccccccCCCcccCCCCHHHHHHHHHHHHhhhhccCChhheeeee
Confidence 988 33333333 2346888999 777 799999753 2 3457889999999999999 556788899999999
Q ss_pred EeecCCCCC----c-eeeeEE---e-C--CCeec---cceeecHHHHHHHHHHHHHHhhh
Q psy1702 151 VGLRPHRYR----V-RVECEQ---T-P--GGKVN---AGVGVVVGRKKRLTDLLLTFNAE 196 (200)
Q Consensus 151 ~G~Rp~tpD----~-~i~~~~---~-~--~g~~~---~G~~~a~~~A~~~a~li~~~~~~ 196 (200)
+|+||.-.| + .+.+.. . . +|++. +.||+.+-+|+.++|.+.+....
T Consensus 330 aGVRPL~~~~~~~~~~isR~~~l~~~~~~~glltv~GGKlTTyR~maE~a~d~v~~~lg~ 389 (532)
T COG0578 330 AGVRPLVDDGDDDTSAISRDHVLFDHAELAGLLTVAGGKLTTYRKMAEDALDAVCEKLGI 389 (532)
T ss_pred eeeeeccCCCCCchhhccCceEEEecCCCCCeEEEecchhHHhHHHHHHHHHHHHHhcCC
Confidence 999998764 2 244432 1 1 47654 67999999999999999987653
No 21
>KOG2844|consensus
Probab=99.58 E-value=1.6e-14 Score=127.70 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=131.0
Q ss_pred HHHHHcCcEEEE-Eeccccccc----------cC--CCCEEEEcCCCCcccccC----CCCceeecceEEEEeC-CCcc-
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL----------GS--EYNTIFNCTGLGARTLCN----DMHVIPVRGQTIRIKA-PHIT- 87 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~----------~g--~ad~VV~AaG~~s~~L~~----~~pl~p~rGq~~~~~~-~~~~- 87 (200)
.+|+++|+.+++ ..|++|... .| ++.+||||||.|++++.. .+|+.|+..+.+++++ +.+.
T Consensus 195 ~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~H~YvvT~~IeGi~s 274 (856)
T KOG2844|consen 195 RAASALGALVIENCPVTGLHVETDKFGGVETPHGSIETECVVNAAGVWAREVGAMAGVKVPLVPMHHAYVVTSRIEGVSS 274 (856)
T ss_pred HHHHhcCcEEEecCCcceEEeecCCccceeccCcceecceEEechhHHHHHhhhhcCCcccceeeeeeEEEecccCCccC
Confidence 888999999999 578877432 23 899999999999998842 6899999999999987 3322
Q ss_pred ---eEEe-cCCeEEEEeCCCCCeEEEccceecC----C-------CCCCCChHHHHHHHHHHHhhCCCCCCCCCcceeEe
Q psy1702 88 ---NFYK-NEYDTYIIPNGFDSLVTLGGTQNFG----H-------VNRCVESTDTESILARTEELLPGVGACGGGQCWVG 152 (200)
Q Consensus 88 ---~~i~-~~~~~y~~p~~~~g~~~iG~t~~~~----~-------~~~~~~~~~~~~ll~~~~~~~P~l~~~~v~~~w~G 152 (200)
+.+. .++..|++.+ .++ ++.|+..... . .-.++|.+.....++.+.++.|.|+++.+.+.-+|
T Consensus 275 ~t~p~irD~DgSvylR~~-~~g-il~GGyE~n~i~~egv~~~~~~~lqE~DWd~F~~hlesai~r~P~l~k~~i~~~v~g 352 (856)
T KOG2844|consen 275 LTRPNIRDLDGSVYLRQQ-GDG-ILFGGYESNPIFTEGVPPGFATGLQEPDWDHFEPHLEAAIERVPVLEKAGIKSLVNG 352 (856)
T ss_pred CCccceecccceEEEEec-CCc-eeccccccCceeccccCCccccccccccHhhhHHHHHHHHHhCchhhhcCccceecC
Confidence 2344 4567999998 888 8888864211 0 01247888999999999999999999999999999
Q ss_pred ecCCCCC--ceeeeEEeCCCeec------cceeecHHHHHHHHHHHHHH
Q psy1702 153 LRPHRYR--VRVECEQTPGGKVN------AGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 153 ~Rp~tpD--~~i~~~~~~~g~~~------~G~~~a~~~A~~~a~li~~~ 193 (200)
...+||| |.+|..+...|.++ .|++++-||++.++++|.+.
T Consensus 353 pe~ftPD~~p~mGe~p~~~gy~v~~G~ns~G~~~~GG~Gk~la~wi~~g 401 (856)
T KOG2844|consen 353 PETFTPDHLPIMGESPEVRGYWVACGFNSAGLSFGGGCGKYLAEWIIHG 401 (856)
T ss_pred ccccCCccccccCCCccccceEEeecCCccceeccCchhHHHHHHhhcC
Confidence 9999999 88898776677654 46666667999999998763
No 22
>KOG2853|consensus
Probab=99.53 E-value=5.6e-14 Score=116.33 Aligned_cols=167 Identities=14% Similarity=0.182 Sum_probs=124.5
Q ss_pred HHHHHcCcEEEEEeccccccc-----------c------------------C-----CCCEEEEcCCCCccccc---C--
Q psy1702 27 VLFKTAGGKVIEKYISSFSEL-----------G------------------S-----EYNTIFNCTGLGARTLC---N-- 67 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~-----------~------------------g-----~ad~VV~AaG~~s~~L~---~-- 67 (200)
+.+..+|+.|.+++|++++.. . + +++.+|||||+||.+++ .
T Consensus 251 rk~~~lGv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~QvArlAgIG 330 (509)
T KOG2853|consen 251 RKAITLGVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWSGQVARLAGIG 330 (509)
T ss_pred HHhhhhcceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccHHHHHHHhccC
Confidence 788889999999888876421 0 0 78999999999999873 1
Q ss_pred --------CCCceeecceEEEEeCC---Ccce-EEecCCeEEEEeCCCCCeEEEccceec----CCCCCCCChHH-HHHH
Q psy1702 68 --------DMHVIPVRGQTIRIKAP---HITN-FYKNEYDTYIIPNGFDSLVTLGGTQNF----GHVNRCVESTD-TESI 130 (200)
Q Consensus 68 --------~~pl~p~rGq~~~~~~~---~~~~-~i~~~~~~y~~p~~~~g~~~iG~t~~~----~~~~~~~~~~~-~~~l 130 (200)
.+|+.|.|-++.++..| .+.. ++++..+.|++....+++.+.|-+... +-.+..+|.+. .+++
T Consensus 331 ~g~g~L~vplPiepRKRyvyvi~~~~~PGl~~Pl~iDpsG~f~Rrdglg~nfl~grsp~ed~~~d~~nldVD~d~F~qki 410 (509)
T KOG2853|consen 331 KGPGLLAVPLPIEPRKRYVYVIFAPDVPGLDTPLTIDPSGVFFRRDGLGGNFLCGRSPSEDEEPDHSNLDVDHDYFYQKI 410 (509)
T ss_pred CCCceeeecccCCccceeEEEEeCCCCCCCCCceeECCCccEEEecCCCCceecccCCccccCCCccccccChHHHHhhh
Confidence 47999999999988764 2333 455555699987634566777766321 11234566555 6778
Q ss_pred HHHHHhhCCCCCCCCCcceeEeecCC-CCC--ceeeeEEeCCCeec------cceeecHHHHHHHHHHHHHH
Q psy1702 131 LARTEELLPGVGACGGGQCWVGLRPH-RYR--VRVECEQTPGGKVN------AGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 131 l~~~~~~~P~l~~~~v~~~w~G~Rp~-tpD--~~i~~~~~~~g~~~------~G~~~a~~~A~~~a~li~~~ 193 (200)
+.......|.+..++|.+.|+|++.. |-| ++||..+...+++. +|+--+++.|+.++++|.+.
T Consensus 411 wP~L~nRVP~fetakVqsaWaGyyD~NtfD~ngViG~HP~y~Nly~atGFsghGvqqs~avgRAiaElIldG 482 (509)
T KOG2853|consen 411 WPHLANRVPAFETAKVQSAWAGYYDHNTFDDNGVIGEHPLYTNLYMATGFSGHGVQQSPAVGRAIAELILDG 482 (509)
T ss_pred hHHHHhcccccceeeeeehhcccccccccccCCcccCCcceeeeeeeecccccchhcchHHHHHHHHHHhcC
Confidence 88999999999999999999999986 566 88998765555543 45556788999999999874
No 23
>KOG0042|consensus
Probab=99.36 E-value=2.1e-12 Score=112.26 Aligned_cols=163 Identities=17% Similarity=0.210 Sum_probs=116.8
Q ss_pred HHHcCcEEEEE-eccccccc--------------cC-----CCCEEEEcCCCCcccccC----C-CC-ceeecceEEEEe
Q psy1702 29 FKTAGGKVIEK-YISSFSEL--------------GS-----EYNTIFNCTGLGARTLCN----D-MH-VIPVRGQTIRIK 82 (200)
Q Consensus 29 ~~~~Gv~~~~~-~V~~l~~~--------------~g-----~ad~VV~AaG~~s~~L~~----~-~p-l~p~rGq~~~~~ 82 (200)
|.++|+++..+ +|.++-.. .| .|.+||||+|+.+..+.. + -| +.|..|-+++++
T Consensus 234 A~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~~i~~pSsGvHIVlP 313 (680)
T KOG0042|consen 234 AARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDAKPICVPSSGVHIVLP 313 (680)
T ss_pred HHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcccccCceeccCCceeEEcc
Confidence 34567777764 66655321 12 799999999999998842 2 23 679999999997
Q ss_pred C---CC----cceEEecCCeEEEEeCCCCCeEEEccceecCC--CCCCCChHHHHHHHHHHHhhCC---CCCCCCCccee
Q psy1702 83 A---PH----ITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGH--VNRCVESTDTESILARTEELLP---GVGACGGGQCW 150 (200)
Q Consensus 83 ~---~~----~~~~i~~~~~~y~~p~~~~g~~~iG~t~~~~~--~~~~~~~~~~~~ll~~~~~~~P---~l~~~~v~~~w 150 (200)
. |. +.+-..+++.+|+.|+ .+. .+.|+|..+.. .++.++.++++.+++.++.++. .+.+.+|.+.|
T Consensus 314 ~yY~P~~mGlldP~TsDgRViFflPW-qg~-TIaGTTD~pt~v~~~P~PtE~dIqfIL~ev~~yl~~~~~VrR~DVlsaW 391 (680)
T KOG0042|consen 314 GYYCPENMGLLDPKTSDGRVIFFLPW-QGK-TIAGTTDIPTSVTHSPTPTEDDIQFILKEVQHYLSFDVEVRREDVLSAW 391 (680)
T ss_pred cccCCcccccccCCCCCCcEEEEecc-CCc-eeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCcccchhhhHHHh
Confidence 5 21 1111113456888999 655 89999987643 4577889999999999999874 36678899999
Q ss_pred EeecCCCCCc-eee------eEE----eCCCeec---cceeecHHHHHHHHHHHHHH
Q psy1702 151 VGLRPHRYRV-RVE------CEQ----TPGGKVN---AGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 151 ~G~Rp~tpD~-~i~------~~~----~~~g~~~---~G~~~a~~~A~~~a~li~~~ 193 (200)
+|+||...|| ... +.+ ..+|++. +.||+.+.||+..+|.+.+.
T Consensus 392 sGiRPLv~DP~~~~~t~sl~R~H~v~~~~~gLiTIaGGKWTTyR~MAEeTVd~aI~~ 448 (680)
T KOG0042|consen 392 SGIRPLVRDPKKVKDTQSLVRNHFVFVSPSGLITIAGGKWTTYRHMAEETVDAAIKA 448 (680)
T ss_pred hCCcccccCCCccccchhhhhhceEEecCCCeEEEecCcchhHHHHHHHHHHHHHHh
Confidence 9999999996 222 111 1256643 66999999999999987653
No 24
>KOG2852|consensus
Probab=98.81 E-value=7.2e-08 Score=78.74 Aligned_cols=168 Identities=12% Similarity=0.082 Sum_probs=119.1
Q ss_pred HHHHHc-CcEEEEEecccccccc------------C-----CCCEEEEcCCCCcccccCCCCceeecceEEEEeCCC--c
Q psy1702 27 VLFKTA-GGKVIEKYISSFSELG------------S-----EYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPH--I 86 (200)
Q Consensus 27 ~~~~~~-Gv~~~~~~V~~l~~~~------------g-----~ad~VV~AaG~~s~~L~~~~pl~p~rGq~~~~~~~~--~ 86 (200)
..+++. ||+++.+.|..+.+.. + .++++|+++|+|+.+|+...++.-.|-+.++++++. +
T Consensus 155 sea~k~~~V~lv~Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~~rIsglrihsI~l~~~e~~v 234 (380)
T KOG2852|consen 155 SEAEKRGGVKLVFGKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPFTRISGLRIHSITLSPGEKPV 234 (380)
T ss_pred HHHHhhcCeEEEEeeeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhccccccceeeeeeEEecCCCCCC
Confidence 666665 5999998877764210 1 688999999999999988888888888888887742 2
Q ss_pred c-e-EEe----cCC------eEEEEeCCCCCeEEEccceecC----C-CCCCCChHHHHHHHHHHHhhCCCCCCCCCcce
Q psy1702 87 T-N-FYK----NEY------DTYIIPNGFDSLVTLGGTQNFG----H-VNRCVESTDTESILARTEELLPGVGACGGGQC 149 (200)
Q Consensus 87 ~-~-~i~----~~~------~~y~~p~~~~g~~~iG~t~~~~----~-~~~~~~~~~~~~ll~~~~~~~P~l~~~~v~~~ 149 (200)
. + +++ .++ -.|.++. . ...+.|.+.... + .+...+++....|.+.+..+.+.+.+..+...
T Consensus 235 ~~~avf~~l~~~~g~ei~~pe~y~rkd-~-Evyicg~~~~e~~lPedsd~v~~npeki~~Lk~~a~~v~s~l~ks~v~~~ 312 (380)
T KOG2852|consen 235 GPSAVFCELNTMDGLEICKPEEYARKD-R-EVYICGETDKEHLLPEDSDDVFVNPEKIIELKEMADLVSSELTKSNVLDA 312 (380)
T ss_pred CCceEEEEEEeCCCccccCcceeecCC-c-eEEEecCCCccccCCcccccceeCHHHHHHHHHHHHHhhhhhccchhhhh
Confidence 2 2 221 111 1444433 2 336777775432 1 23456789999999999999999888888888
Q ss_pred eEeecCCCCC---ceeeeEEe----CCCeeccceeecHHHHHHHHHHHHHHhhh
Q psy1702 150 WVGLRPHRYR---VRVECEQT----PGGKVNAGVGVVVGRKKRLTDLLLTFNAE 196 (200)
Q Consensus 150 w~G~Rp~tpD---~~i~~~~~----~~g~~~~G~~~a~~~A~~~a~li~~~~~~ 196 (200)
-+-+-|.+.+ |.|+..+. ..||..=|++.+|++++.||+|+....++
T Consensus 313 qacfLP~sn~tg~PvIget~sg~yVaagHscWGItnaPaTG~~mAEllldgeaT 366 (380)
T KOG2852|consen 313 QACFLPTSNITGIPVIGETKSGVYVAAGHSCWGITNAPATGKCMAELLLDGEAT 366 (380)
T ss_pred hhccccccCCCCCceEeecCCceEEeecccccceecCcchhHHHHHHHhcccee
Confidence 8889999888 77776432 23343356778899999999999887654
No 25
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.78 E-value=5.3e-08 Score=84.41 Aligned_cols=184 Identities=15% Similarity=0.173 Sum_probs=128.4
Q ss_pred ccccCCceecChhhhhHh--------------H---------------HHHHHcCcEEEE-Eecccccccc---------
Q psy1702 8 KPVLPVYKRMSEEELAVY--------------T---------------VLFKTAGGKVIE-KYISSFSELG--------- 48 (200)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~--------------~---------------~~~~~~Gv~~~~-~~V~~l~~~~--------- 48 (200)
++.|+.++.++++|+=++ | +.++++|++++. ++|++|+...
T Consensus 113 ~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~ 192 (429)
T COG0579 113 ANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTS 192 (429)
T ss_pred hCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEec
Confidence 566778889999886331 1 788889999988 6898886531
Q ss_pred -C----CCCEEEEcCCCCcccccC------CCCceeecceEEEEeCC---CcceEEe-----c--CCeEEEEeCCCCCeE
Q psy1702 49 -S----EYNTIFNCTGLGARTLCN------DMHVIPVRGQTIRIKAP---HITNFYK-----N--EYDTYIIPNGFDSLV 107 (200)
Q Consensus 49 -g----~ad~VV~AaG~~s~~L~~------~~pl~p~rGq~~~~~~~---~~~~~i~-----~--~~~~y~~p~~~~g~~ 107 (200)
| +|+.||||||..|..|+. +....|.+|+.+++++. .+++.++ . ..++++.+. -||.+
T Consensus 193 ~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P~~G~y~~~~~~~~~~~~~~Iy~~p~~~~p~~gV~~~~~-idG~~ 271 (429)
T COG0579 193 NGEETLEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLVLDNEVKALLRHKIYPVPNPGLPGLGVHHTPT-IDGSL 271 (429)
T ss_pred CCcEEEEeeEEEECCchhHHHHHHHhCCCcccccCccceEEEEEcccccccccceeecCCCCCCCCCcceeecc-cCCeE
Confidence 2 689999999999998852 36788999999999872 3455554 1 124777887 78889
Q ss_pred EEccceecC----CCCCCCChHHHHHHHHHHHhhCCCCC-CCCCcceeEeecCCCCCc-------eeeeEEeCCCee---
Q psy1702 108 TLGGTQNFG----HVNRCVESTDTESILARTEELLPGVG-ACGGGQCWVGLRPHRYRV-------RVECEQTPGGKV--- 172 (200)
Q Consensus 108 ~iG~t~~~~----~~~~~~~~~~~~~ll~~~~~~~P~l~-~~~v~~~w~G~Rp~tpD~-------~i~~~~~~~g~~--- 172 (200)
++|-+.... ..+...+.+..+.+.......+|.+. .-.....++|.||...++ .+......++..
T Consensus 272 l~GP~A~~~~~~~k~~~~~~~d~~d~v~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~ip~~~~~~~~~~~a 351 (429)
T COG0579 272 LFGPNALDSPKFLKGDRGVDFDLLDSVRKANSRGMPDLGIKNNVLANYAGIRPILKEPRLPALDFIIPEAKDEDWFINVA 351 (429)
T ss_pred EECCCcccchhhhccccccccchhhhHHHhhhhhcccccccccchhhhheeccccccccccccceecccccCCCCceeee
Confidence 999887543 12356778888899999999999987 567889999999964221 122111112211
Q ss_pred ---ccceeecHHHHHHHHHHHHH
Q psy1702 173 ---NAGVGVVVGRKKRLTDLLLT 192 (200)
Q Consensus 173 ---~~G~~~a~~~A~~~a~li~~ 192 (200)
.-|++-+++.|+.+++++.+
T Consensus 352 GiRsq~lt~~~a~~~~~~~~~t~ 374 (429)
T COG0579 352 GIRSQGLTADPAIAGGVLELLTE 374 (429)
T ss_pred eEEccccccChhHhhhHhhhccc
Confidence 15666666666666666544
No 26
>KOG2820|consensus
Probab=98.53 E-value=1.5e-06 Score=72.45 Aligned_cols=169 Identities=10% Similarity=0.010 Sum_probs=103.5
Q ss_pred HHHHHcCcEEEEE-ecccccc------------ccC---CCCEEEEcCCCCcccccC-----CCCceeecceEEEEeCCC
Q psy1702 27 VLFKTAGGKVIEK-YISSFSE------------LGS---EYNTIFNCTGLGARTLCN-----DMHVIPVRGQTIRIKAPH 85 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~------------~~g---~ad~VV~AaG~~s~~L~~-----~~pl~p~rGq~~~~~~~~ 85 (200)
..++.+|+.|+.+ +|..+.. ..+ .++.+|+++|+|..+|+. +.||.|++=-+.-... .
T Consensus 161 ~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~~i~ltvcywk~-~ 239 (399)
T KOG2820|consen 161 DKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVAPIQLTVCYWKT-K 239 (399)
T ss_pred HHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccceeEeehhhhee-e
Confidence 7888899999985 4554431 112 799999999999999875 4788887533221111 1
Q ss_pred cceE--EecCCeEEEEeCCCCC-eEEEccce-----------ecC-C---CC-----CCCChHHHHHHHHHHHhhCCCCC
Q psy1702 86 ITNF--YKNEYDTYIIPNGFDS-LVTLGGTQ-----------NFG-H---VN-----RCVESTDTESILARTEELLPGVG 142 (200)
Q Consensus 86 ~~~~--i~~~~~~y~~p~~~~g-~~~iG~t~-----------~~~-~---~~-----~~~~~~~~~~ll~~~~~~~P~l~ 142 (200)
..+. +..++..|++|.-.+. .+..|... ..+ . .+ ..+....++-......+++|.+.
T Consensus 240 ~~~~~~l~~d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~s~~~~idl~~~f~~~~~p~l~ 319 (399)
T KOG2820|consen 240 KNMPVYLFDDDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKRSLPKAIDLMRRFLRTFGPDLD 319 (399)
T ss_pred cCCceeecCCCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCcccCcchHHHHHHHHHHHhCcccc
Confidence 1222 2233446776652333 24455431 111 0 01 11122233333334466789998
Q ss_pred CCCCcceeEeecCCCCC--ceeeeEEeCCCeec------cceeecHHHHHHHHHHHHHHhhh
Q psy1702 143 ACGGGQCWVGLRPHRYR--VRVECEQTPGGKVN------AGVGVVVGRKKRLTDLLLTFNAE 196 (200)
Q Consensus 143 ~~~v~~~w~G~Rp~tpD--~~i~~~~~~~g~~~------~G~~~a~~~A~~~a~li~~~~~~ 196 (200)
+...+..-.-++..||| .+|+..+..++.++ +|+-++|++++.+++++.+...|
T Consensus 320 ~~~p~~t~~C~YT~TpD~~FviD~~P~~~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~~~~~e 381 (399)
T KOG2820|consen 320 DRSPINTKMCMYTDTPDANFVIDKHPQYDNVFVGGGGSGHGFKFAPNIGKYLAEMAMGDLSE 381 (399)
T ss_pred CCCcceeeEEEeeCCCCcCeeeecCCCcccEEEecCCCCcceeecchHHHHHHHHhhhcccc
Confidence 87888888999999999 77777654334332 66778889999999998876553
No 27
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.20 E-value=9.8e-06 Score=71.93 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=100.4
Q ss_pred HHHHHcCcEEEEE-eccccccc-------------cC-----CCCEEEEcCCCCcccccC--------CCCceeecceEE
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL-------------GS-----EYNTIFNCTGLGARTLCN--------DMHVIPVRGQTI 79 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~-------------~g-----~ad~VV~AaG~~s~~L~~--------~~pl~p~rGq~~ 79 (200)
+.++++|++++.. +|++++.. .+ .||.||||||.|+..|+. +.++.|+|||++
T Consensus 186 ~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~~~~~~i~P~~Gq~l 265 (483)
T TIGR01320 186 GYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPEVKGFAGFPVSGLFL 265 (483)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCcCCCCceeeeeEEEE
Confidence 7778889999884 77766431 01 699999999999988742 358899999999
Q ss_pred EEeCCC----cceEEe---cCC-eEEEEeCCCCCeE-------EEcccee--c----CCC--C--CCCChH---------
Q psy1702 80 RIKAPH----ITNFYK---NEY-DTYIIPNGFDSLV-------TLGGTQN--F----GHV--N--RCVEST--------- 125 (200)
Q Consensus 80 ~~~~~~----~~~~i~---~~~-~~y~~p~~~~g~~-------~iG~t~~--~----~~~--~--~~~~~~--------- 125 (200)
.++.+. .+..++ +.+ ..|.+|+ .|+++ ++|-+.. . .+. | ...+..
T Consensus 266 ~l~~~~~~~~~~~~IY~v~~p~~p~~~Vph-~Dtr~i~G~~~~~~GP~A~~~~~~~reg~~~d~~~~~~~~~~~~~l~~~ 344 (483)
T TIGR01320 266 RCGNPELTEQHRAKVYGQASVGAPPMSVPH-LDTRVVDGKKWLLFGPYAGWSPKFLKHGSILDLPLSIRPDNLLSMLGVG 344 (483)
T ss_pred EeCCHHHHhhcCeEEEecCCCCCCCcEEec-CCCccccCCEEEEECcCCCcchHhhcCCchhHHhhcCCHhhHHHHHHHH
Confidence 987641 223343 222 2567776 54322 3665443 1 011 1 111110
Q ss_pred ----------------HHHHHHHHHHhhCCCCCCCCCcceeEeecCC--CCCc-----eeee--EEe--CCC--eec---
Q psy1702 126 ----------------DTESILARTEELLPGVGACGGGQCWVGLRPH--RYRV-----RVEC--EQT--PGG--KVN--- 173 (200)
Q Consensus 126 ----------------~~~~ll~~~~~~~P~l~~~~v~~~w~G~Rp~--tpD~-----~i~~--~~~--~~g--~~~--- 173 (200)
.....++.+++++|.+...++....+|+|+. .+|. .+.. .-+ .++ |+.
T Consensus 345 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~p~~~~~d~~~~~~GiR~Q~i~~~~~~~~g~l~~g~~~i~~~~~~~~~l~~~ 424 (483)
T TIGR01320 345 LTEMDLTKYLIGQLRKSEEERVSALREFYPEAIDSDWELIVAGQRVQVIKKDPEKGGGVLEFGTTLIADADGSIAGLLGA 424 (483)
T ss_pred HhhhHHHHHHHHHHHHhHHHHHHHHHHhCCCCCHHHcEEccCceEEEEEecCCCCCcCEEecCCeEEECCCCeEEEecCC
Confidence 0112345678999999877888889999986 3441 1221 111 123 221
Q ss_pred -cceeecHHHHHHHHHHHHH
Q psy1702 174 -AGVGVVVGRKKRLTDLLLT 192 (200)
Q Consensus 174 -~G~~~a~~~A~~~a~li~~ 192 (200)
.|.|.|..+|+.+++....
T Consensus 425 SPgaTss~~i~~~v~~~~~~ 444 (483)
T TIGR01320 425 SPGASTAVSIMLDLLERCFP 444 (483)
T ss_pred CchHHhhHHHHHHHHHHHhH
Confidence 6888888888888876543
No 28
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.20 E-value=5.2e-06 Score=73.78 Aligned_cols=165 Identities=15% Similarity=0.174 Sum_probs=100.9
Q ss_pred HHHHH-cCcEEEE-Eeccccccc-------------cC-----CCCEEEEcCCCCcccccC--------CCCceeecceE
Q psy1702 27 VLFKT-AGGKVIE-KYISSFSEL-------------GS-----EYNTIFNCTGLGARTLCN--------DMHVIPVRGQT 78 (200)
Q Consensus 27 ~~~~~-~Gv~~~~-~~V~~l~~~-------------~g-----~ad~VV~AaG~~s~~L~~--------~~pl~p~rGq~ 78 (200)
+++++ .|++++. ++|++++.. .+ +||.||||||+|+..|+. ..++.|+|||.
T Consensus 192 ~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~~~~~~i~PvkGq~ 271 (497)
T PRK13339 192 KHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPESKHLGGFPISGQF 271 (497)
T ss_pred HHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCccCCCceEeeeEEE
Confidence 55654 4899987 467765421 11 599999999999998852 26899999999
Q ss_pred EEEeCCC-cc---eEEec---CC-eEEEEeCCCCCeEEEcc-------ceecC-------C-CC------C-CC------
Q psy1702 79 IRIKAPH-IT---NFYKN---EY-DTYIIPNGFDSLVTLGG-------TQNFG-------H-VN------R-CV------ 122 (200)
Q Consensus 79 ~~~~~~~-~~---~~i~~---~~-~~y~~p~~~~g~~~iG~-------t~~~~-------~-~~------~-~~------ 122 (200)
+.++++. +. ..++. .+ ..|.+|+ .|++++.|. +.... . .| . ..
T Consensus 272 l~l~~~~~v~~h~~~VY~v~~~~~P~~~VPh-lDtr~i~G~~~v~~GP~A~~~~~~~r~~~~~d~~~~l~~~~~~~~~~~ 350 (497)
T PRK13339 272 LRCTNPEVVKQHQAKVYSKEPVGTPPMTVPH-LDTRYIDGKRSLLFGPYAGFGPKFLKHGSNLDLFKSVKPYNITTMLAV 350 (497)
T ss_pred EEecCHHHhhhcCceEeCCCCCCCCCCcCCC-CCCcEEcCceeEEECCCccchHHHhccCCHHHHHHHhCccCcHHHHHH
Confidence 9997642 22 12442 11 2567787 666566664 11110 0 00 0 00
Q ss_pred ---Ch-----------HHHHHHHHHHHhhCCCCCCCCCcceeEeecCC--CCCc------e-eeeEEe--CCCe--ec--
Q psy1702 123 ---ES-----------TDTESILARTEELLPGVGACGGGQCWVGLRPH--RYRV------R-VECEQT--PGGK--VN-- 173 (200)
Q Consensus 123 ---~~-----------~~~~~ll~~~~~~~P~l~~~~v~~~w~G~Rp~--tpD~------~-i~~~~~--~~g~--~~-- 173 (200)
.. ......++.+++++|.+...++....+|+|+. .+|. . .|.+.+ .+|. +.
T Consensus 351 ~~~~~~l~~~~~~e~~~~k~~~~~~~~~~~P~~~~~D~~~~~aGiR~Q~i~~~~~~~~dfl~~g~~~i~~~~~s~~~lna 430 (497)
T PRK13339 351 AVKNMPLIKYSIDQVMQTKEGRMNHLRTFYPEARAEDWRLYTAGKRVQVIKDTPEHGKGFIQFGTEVVNSQDHSVIALLG 430 (497)
T ss_pred HHhccHHHHHHHHHHhhCHHHHHHHHHHhCCCCCHHHeeEcCCceEEEEEeCCCCccCCEEEecceeeecCCCeEEEecC
Confidence 00 01234556788999999877777889999986 3441 1 222222 2332 22
Q ss_pred --cceeecHHHHHHHHHHHHH
Q psy1702 174 --AGVGVVVGRKKRLTDLLLT 192 (200)
Q Consensus 174 --~G~~~a~~~A~~~a~li~~ 192 (200)
.|.|.|..+|..++|.+..
T Consensus 431 ~SPgATssl~ia~~v~~~~f~ 451 (497)
T PRK13339 431 ESPGASTSVSVALEVLERNFP 451 (497)
T ss_pred CCcHHHhhHHHHHHHHHHHhH
Confidence 6888888899998886554
No 29
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.06 E-value=1.3e-05 Score=71.38 Aligned_cols=57 Identities=7% Similarity=-0.020 Sum_probs=44.6
Q ss_pred HHHHH----cC--cEEEE-Eeccccccc----------cC--CCCEEEEcCCCCcccccC------CCCceeecceEEEE
Q psy1702 27 VLFKT----AG--GKVIE-KYISSFSEL----------GS--EYNTIFNCTGLGARTLCN------DMHVIPVRGQTIRI 81 (200)
Q Consensus 27 ~~~~~----~G--v~~~~-~~V~~l~~~----------~g--~ad~VV~AaG~~s~~L~~------~~pl~p~rGq~~~~ 81 (200)
+.+++ +| ++++. .+|++|+.. .+ .||.||||||.||..|+. ++++.|++|+.+++
T Consensus 219 ~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~i~A~~VVvaAG~~S~~La~~~Gi~~~~~i~Pv~G~~~~~ 298 (497)
T PTZ00383 219 KHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGEIRARFVVVSACGYSLLFAQKMGYGLEYSCLPVAGSFYFS 298 (497)
T ss_pred HHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCEEEeCEEEECcChhHHHHHHHhCCCCCCCEEecCceEEEc
Confidence 77777 78 66776 478877643 12 799999999999998752 68899999999877
Q ss_pred eC
Q psy1702 82 KA 83 (200)
Q Consensus 82 ~~ 83 (200)
+.
T Consensus 299 ~~ 300 (497)
T PTZ00383 299 GN 300 (497)
T ss_pred Ch
Confidence 53
No 30
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.99 E-value=2.8e-05 Score=69.20 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=100.5
Q ss_pred HHHHHcC-cEEEE-Eeccccccc-------------cC-----CCCEEEEcCCCCcccccC--------CCCceeecceE
Q psy1702 27 VLFKTAG-GKVIE-KYISSFSEL-------------GS-----EYNTIFNCTGLGARTLCN--------DMHVIPVRGQT 78 (200)
Q Consensus 27 ~~~~~~G-v~~~~-~~V~~l~~~-------------~g-----~ad~VV~AaG~~s~~L~~--------~~pl~p~rGq~ 78 (200)
+++++.| ++++. ++|++++.. .+ .|+.||+|||.|+..|+. +.++.|+|||.
T Consensus 191 ~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~~~~~~i~PvrGq~ 270 (494)
T PRK05257 191 GYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPEAKGYGGFPVSGQF 270 (494)
T ss_pred HHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCccCCCCeeeeeEEE
Confidence 6677777 79987 477765431 01 589999999999998852 35899999999
Q ss_pred EEEeCCC--cceE--Eec----CCeEEEEeCCCCCeEEEcc-------ceec-----CCCC-----CCC-----------
Q psy1702 79 IRIKAPH--ITNF--YKN----EYDTYIIPNGFDSLVTLGG-------TQNF-----GHVN-----RCV----------- 122 (200)
Q Consensus 79 ~~~~~~~--~~~~--i~~----~~~~y~~p~~~~g~~~iG~-------t~~~-----~~~~-----~~~----------- 122 (200)
++++++. .++. ++. +...|.+|+ .|++++.|. +... .+.+ ..+
T Consensus 271 l~~~~~~~v~~~~~kvY~~~~~~~P~~~vPh-~dtr~i~G~~~~~~GP~A~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 349 (494)
T PRK05257 271 LVCENPEVVAQHHAKVYGKASVGAPPMSVPH-LDTRVIDGKRSLLFGPFAGFSTKFLKNGSLLDLFSSVRPSNLLPMLAV 349 (494)
T ss_pred EEcCCHHHHhcCCeEEecCCCCCCCCCCCCC-CCCcEECCceeEEECCCccccHHhccCCCHHHHHHhcCccccHHHHHH
Confidence 9998642 1333 442 112467777 666666664 1110 0000 000
Q ss_pred ---Ch-----------HHHHHHHHHHHhhCCCCCCCCCcceeEeecCC--CCCc----ee--eeEEe--CCCee--c---
Q psy1702 123 ---ES-----------TDTESILARTEELLPGVGACGGGQCWVGLRPH--RYRV----RV--ECEQT--PGGKV--N--- 173 (200)
Q Consensus 123 ---~~-----------~~~~~ll~~~~~~~P~l~~~~v~~~w~G~Rp~--tpD~----~i--~~~~~--~~g~~--~--- 173 (200)
.. ......++.+++++|.+...++....+|+|+. .+|+ .+ +..-+ .+|.+ .
T Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~aG~R~Q~i~~~~~~~g~L~~~~~~i~~~~~~~~~l~~~ 429 (494)
T PRK05257 350 GLDNFDLTKYLISQVMLSDEDRFEALREFYPNAKPEDWELIVAGQRVQIIKKDPKKGGVLQFGTEVVSSADGSIAALLGA 429 (494)
T ss_pred HhhhhHHHHHHHHHHhhCHHHHHHHHHHhCCCCCHHHceEcCCceEeEEEccCCCCCCEEECCcEEEecCCCeEEEEcCC
Confidence 00 01234556788999999876777778999986 3431 12 21111 23322 1
Q ss_pred -cceeecHHHHHHHHHHHHHH
Q psy1702 174 -AGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 174 -~G~~~a~~~A~~~a~li~~~ 193 (200)
.|.|.|+.+|..+++.+...
T Consensus 430 SPgat~s~~i~~~v~~~~~~~ 450 (494)
T PRK05257 430 SPGASTAVPIMLEVLEKCFPD 450 (494)
T ss_pred CchHHHHHHHHHHHHHHhCHh
Confidence 67888888888888865543
No 31
>PLN02697 lycopene epsilon cyclase
Probab=97.95 E-value=0.00051 Score=61.69 Aligned_cols=164 Identities=12% Similarity=0.094 Sum_probs=96.4
Q ss_pred HHHHHHcCcEEEEEeccccccc----------cC---CCCEEEEcCCCCcccccC------CCCceeecceEEEEeCCC-
Q psy1702 26 TVLFKTAGGKVIEKYISSFSEL----------GS---EYNTIFNCTGLGARTLCN------DMHVIPVRGQTIRIKAPH- 85 (200)
Q Consensus 26 ~~~~~~~Gv~~~~~~V~~l~~~----------~g---~ad~VV~AaG~~s~~L~~------~~pl~p~rGq~~~~~~~~- 85 (200)
-++|.+.|++++..+|+++... .+ .|+.||.|+|+++..++. ..+.+...|+.+.++.+.
T Consensus 199 l~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~ 278 (529)
T PLN02697 199 LRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVCVQTAYGVEVEVENNPY 278 (529)
T ss_pred HHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcccEEEEEEEEEecCCCC
Confidence 3777888999977777766421 12 799999999999965532 245788889998886521
Q ss_pred -cc-eEEec----------------CCeEEEEeCCCCCeEEEccceecCCCCCCCChHHH-HHHHHHHHhhCCCCCCCCC
Q psy1702 86 -IT-NFYKN----------------EYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDT-ESILARTEELLPGVGACGG 146 (200)
Q Consensus 86 -~~-~~i~~----------------~~~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~-~~ll~~~~~~~P~l~~~~v 146 (200)
.. .++++ .+..|++|. .++++.|=+|.... ....+.+.. +.+.+++.+. ++...++
T Consensus 279 d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~-~~~~~~VE~T~l~~--~~~l~~~~l~~~L~~~l~~~--Gi~~~~i 353 (529)
T PLN02697 279 DPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPM-SSTRVFFEETCLAS--KDAMPFDLLKKRLMSRLETM--GIRILKT 353 (529)
T ss_pred CcchheeeccccccccccccccCCCceEEEEeec-CCCeEEEEEeeecc--CCCCCHHHHHHHHHHHHHhC--CCCcceE
Confidence 11 12211 146899999 88888884443211 112233333 3344444433 3445667
Q ss_pred cceeEeecCCCCC-ceeeeE----EeCCCeec--cceeecHH--HHHHHHHHHHHHh
Q psy1702 147 GQCWVGLRPHRYR-VRVECE----QTPGGKVN--AGVGVVVG--RKKRLTDLLLTFN 194 (200)
Q Consensus 147 ~~~w~G~Rp~tpD-~~i~~~----~~~~g~~~--~G~~~a~~--~A~~~a~li~~~~ 194 (200)
++.=.|+-|+..+ +..... ....|++. .|++++.+ .|..+|+.|.+..
T Consensus 354 ~~~E~g~iPm~g~~~~~~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l 410 (529)
T PLN02697 354 YEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARIL 410 (529)
T ss_pred EEEEeeeecCCCCCcccCCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHh
Confidence 7878888898655 332111 11234444 66666554 5555555555544
No 32
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.37 E-value=0.013 Score=50.38 Aligned_cols=174 Identities=13% Similarity=0.134 Sum_probs=103.8
Q ss_pred CceecChhhhhHh-HHHHHHcCcEEEEEecccccccc---------C---CCCEEEEcCCCCcccccCCCCceeecceEE
Q psy1702 13 VYKRMSEEELAVY-TVLFKTAGGKVIEKYISSFSELG---------S---EYNTIFNCTGLGARTLCNDMHVIPVRGQTI 79 (200)
Q Consensus 13 ~~~~~~~~~~~~~-~~~~~~~Gv~~~~~~V~~l~~~~---------g---~ad~VV~AaG~~s~~L~~~~pl~p~rGq~~ 79 (200)
.|..|+.+.|..+ -+++.+.|+.++..+|++++... | .|+.||.|.|+.+. .......+--.|..+
T Consensus 80 ~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~-~~~~~~~Q~f~G~~v 158 (374)
T PF05834_consen 80 PYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP-KARPLGLQHFYGWEV 158 (374)
T ss_pred ceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc-cccccccceeEEEEE
Confidence 3444555554442 36666667777767888876431 2 79999999996554 212234456677777
Q ss_pred EEeCCC--cceE-Ee------c---CCeEEEEeCCCCCeEEEccceecCCCCCCCChHHH-HHHHHHHHhhCCCCCCCCC
Q psy1702 80 RIKAPH--ITNF-YK------N---EYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDT-ESILARTEELLPGVGACGG 146 (200)
Q Consensus 80 ~~~~~~--~~~~-i~------~---~~~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~-~~ll~~~~~~~P~l~~~~v 146 (200)
.++.+. .... ++ . .+..|+.|. .+++.+|..|..... ...+.+.. +.+.+.+.+ -++...+|
T Consensus 159 ~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~-~~~~alvE~T~fs~~--~~~~~~~~~~~l~~~l~~--~g~~~~~i 233 (374)
T PF05834_consen 159 ETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPF-SEDRALVEETSFSPR--PALPEEELKARLRRYLER--LGIDDYEI 233 (374)
T ss_pred eccCCCCCCCceEEEEecccCCCCCceEEEEEEc-CCCeEEEEEEEEcCC--CCCCHHHHHHHHHHHHHH--cCCCceeE
Confidence 776542 2221 11 1 257899999 888899998865432 22333443 444445554 45566789
Q ss_pred cceeEeecCCCCC---ceeeeE----EeCCCeec--cceeecHH--HHHHHHHHHHH
Q psy1702 147 GQCWVGLRPHRYR---VRVECE----QTPGGKVN--AGVGVVVG--RKKRLTDLLLT 192 (200)
Q Consensus 147 ~~~w~G~Rp~tpD---~~i~~~----~~~~g~~~--~G~~~a~~--~A~~~a~li~~ 192 (200)
++.-.|+-|++.+ +..... ....|.+. .|+++... .|+.+|+.+.+
T Consensus 234 ~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 234 LEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred EEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 9999999999533 222222 12345554 67666655 56666666554
No 33
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.35 E-value=0.022 Score=48.79 Aligned_cols=163 Identities=12% Similarity=0.051 Sum_probs=87.2
Q ss_pred HHHHHcCcEEEEEeccccccc----------cC---CCCEEEEcCCCCccc----ccCCCCceeecceEEEEeCC--Ccc
Q psy1702 27 VLFKTAGGKVIEKYISSFSEL----------GS---EYNTIFNCTGLGART----LCNDMHVIPVRGQTIRIKAP--HIT 87 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~----------~g---~ad~VV~AaG~~s~~----L~~~~pl~p~rGq~~~~~~~--~~~ 87 (200)
+++.+.|++++..+|.++... .+ .|+.||.|+|.++.- ......+...+|+.+.++.+ ...
T Consensus 93 ~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~q~~~G~~~~~~~~~~~~~ 172 (388)
T TIGR01790 93 QKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQVAYGVEARLSRPPHGPS 172 (388)
T ss_pred HHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceEEEEEEEEEEEcCCCCCCC
Confidence 777788999987666665432 12 799999999999811 11234566678888777642 111
Q ss_pred e-EEe----c---------CC--eEEEEeCCCCCeEEEccceecCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCcceeE
Q psy1702 88 N-FYK----N---------EY--DTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWV 151 (200)
Q Consensus 88 ~-~i~----~---------~~--~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~~~ll~~~~~~~P~l~~~~v~~~w~ 151 (200)
. +++ . .+ ..|++|. .+++..++.+.... ....+.+..++.+.+..+-+ .+...++.+.-.
T Consensus 173 ~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~-~~~~~~v~~~~~~~--~~~~~~~~~~~~l~~~~~~~-g~~~~~i~~~~~ 248 (388)
T TIGR01790 173 SMVIMDARVDQLAAPELKGYRPTFLYAMPL-GSTRVFIEETSLAD--RPALPRDRLRQRILARLNAQ-GWQIKTIEEEEW 248 (388)
T ss_pred ceEEEeccccccccccccCCCCceEEEeec-CCCeEEEEeccccC--CCCCCHHHHHHHHHHHHHHc-CCeeeEEEeeee
Confidence 1 111 1 12 5788998 77778887554221 12233444444333322222 232233444444
Q ss_pred eecCCCCC-cee----eeEEeCCCeec--cceeecHH--HHHHHHHHHHHH
Q psy1702 152 GLRPHRYR-VRV----ECEQTPGGKVN--AGVGVVVG--RKKRLTDLLLTF 193 (200)
Q Consensus 152 G~Rp~tpD-~~i----~~~~~~~g~~~--~G~~~a~~--~A~~~a~li~~~ 193 (200)
|+-|+..- +.. -......|.+. .|.|+..+ .|..+++.+.+.
T Consensus 249 ~~iP~~~~~~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~ 299 (388)
T TIGR01790 249 GALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQA 299 (388)
T ss_pred EEEecccCCCccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHH
Confidence 66666332 211 00111123333 56666665 778888877543
No 34
>KOG2665|consensus
Probab=97.32 E-value=0.00074 Score=56.39 Aligned_cols=183 Identities=15% Similarity=0.259 Sum_probs=113.3
Q ss_pred ccccCCceecChhhhhHh------------H---------------HHHHHcCcEEEEE-ecccccccc-----------
Q psy1702 8 KPVLPVYKRMSEEELAVY------------T---------------VLFKTAGGKVIEK-YISSFSELG----------- 48 (200)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~------------~---------------~~~~~~Gv~~~~~-~V~~l~~~~----------- 48 (200)
.|.++|+|-|.-.|.... | +.++..|..+... ++.++++..
T Consensus 158 qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ 237 (453)
T KOG2665|consen 158 QNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVL 237 (453)
T ss_pred hcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEe
Confidence 367888887777664221 2 6788899988874 777765421
Q ss_pred ---C---CCCEEEEcCCCCcccccC------CCCceeecceEEEEeCCC---cceEEe---cC----CeEEEEeCCCCCe
Q psy1702 49 ---S---EYNTIFNCTGLGARTLCN------DMHVIPVRGQTIRIKAPH---ITNFYK---NE----YDTYIIPNGFDSL 106 (200)
Q Consensus 49 ---g---~ad~VV~AaG~~s~~L~~------~~pl~p~rGq~~~~~~~~---~~~~i~---~~----~~~y~~p~~~~g~ 106 (200)
+ ++..||-|+|..+..+.+ +.-+.|.||..+.+.+.. +++=++ +. .++.+.|+ .++.
T Consensus 238 ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dPriVpfrG~ylll~~ek~h~vk~niyPvpd~RFpflGvhftPr-m~g~ 316 (453)
T KOG2665|consen 238 NGKGEEKRTKNVVTCAGLQSDRCAALSGCELDPRIVPFRGEYLLLKPEKLHLVKGNIYPVPDPRFPFLGVHFTPR-MDGS 316 (453)
T ss_pred cCccceeEEeEEEEeccccHhHHHHHhCCCCCCeeeeccchhhhcChHHhccccCceeeCCCCCCccccccccCc-CCCc
Confidence 1 788999999999988742 345789999988776532 222111 11 12556777 6665
Q ss_pred EEEccce---------ecCC----------------------CCCCCChHHHHHH----HHHHHhhCCCCCCCCCcceeE
Q psy1702 107 VTLGGTQ---------NFGH----------------------VNRCVESTDTESI----LARTEELLPGVGACGGGQCWV 151 (200)
Q Consensus 107 ~~iG~t~---------~~~~----------------------~~~~~~~~~~~~l----l~~~~~~~P~l~~~~v~~~w~ 151 (200)
+-+|-.. ..++ ++..+++-..+.+ ...+.+++|.+...++.+..+
T Consensus 317 iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyiPdlk~~di~rGpa 396 (453)
T KOG2665|consen 317 IWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFDYGVNEMYKEKFIAAQVKELQKYIPDLKDSDIERGPA 396 (453)
T ss_pred eecCCCceEEEEEEeeccccccccchhhheecCchHHHHHhhcCcccchHhhhhhhhhhhHHHHHhCccccccccccCcc
Confidence 5555321 0011 1112222223333 378889999999999999999
Q ss_pred eecCCCCC--------ceeeeE--EeCCCee--c----cceeecHHHHHHHHHHHH
Q psy1702 152 GLRPHRYR--------VRVECE--QTPGGKV--N----AGVGVVVGRKKRLTDLLL 191 (200)
Q Consensus 152 G~Rp~tpD--------~~i~~~--~~~~g~~--~----~G~~~a~~~A~~~a~li~ 191 (200)
|+|...-| ..+... ...+++. . .|-|-+.++|+++||-+.
T Consensus 397 GvRaqald~~gnlv~DFVfd~g~g~~~p~llh~rnapSPgaTSSlAIa~mIa~k~~ 452 (453)
T KOG2665|consen 397 GVRAQALDGDGNLVDDFVFDGGEGHLVPRLLHVRNAPSPGATSSLAIAKMIADKFL 452 (453)
T ss_pred cccchhccCCCCCchheEEecCccccccceEEecCCCCccchhhHHHHHHHHHHhc
Confidence 99954322 233222 1223332 2 688999999999998653
No 35
>PLN02463 lycopene beta cyclase
Probab=97.10 E-value=0.032 Score=49.23 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=88.3
Q ss_pred HHHHHcCcEEEEEeccccccc---------cC---CCCEEEEcCCCCcccccCCCCc----eeecceEEEEeCC--Ccce
Q psy1702 27 VLFKTAGGKVIEKYISSFSEL---------GS---EYNTIFNCTGLGARTLCNDMHV----IPVRGQTIRIKAP--HITN 88 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~---------~g---~ad~VV~AaG~~s~~L~~~~pl----~p~rGq~~~~~~~--~~~~ 88 (200)
++|.+.|++++..+|++++.. .| .||.||.|.|..+..+....|. ....|..+.++.+ ....
T Consensus 122 ~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~~~~~g~Q~a~Gi~~ev~~~p~d~~~ 201 (447)
T PLN02463 122 ERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQYDKPFNPGYQVAYGILAEVDSHPFDLDK 201 (447)
T ss_pred HHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCCCCCCCccceeeeeEEeecCCCCccccc
Confidence 777888999987777776532 12 7999999999987533211121 1223333333321 1111
Q ss_pred EEe--------c------------CCeEEEEeCCCCCeEEEccceecCCCCCCCChHHHHH-HHHHHHhhCCCCCCCCCc
Q psy1702 89 FYK--------N------------EYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTES-ILARTEELLPGVGACGGG 147 (200)
Q Consensus 89 ~i~--------~------------~~~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~~~-ll~~~~~~~P~l~~~~v~ 147 (200)
++. . .+..|+.|. .++++.++.|..... ...+.+..++ +.+++. .+ ++...++.
T Consensus 202 ~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~-~~~~~~vEeT~l~s~--~~~~~~~lk~~L~~~l~-~~-Gi~~~~i~ 276 (447)
T PLN02463 202 MLFMDWRDSHLGNNPELRARNSKLPTFLYAMPF-SSNRIFLEETSLVAR--PGLPMDDIQERMVARLR-HL-GIKVKSVE 276 (447)
T ss_pred chhhhcChhhccccchhhhccCCCCceEEEEec-CCCeEEEEeeeeecC--CCCCHHHHHHHHHHHHH-HC-CCCcceee
Confidence 111 0 236799999 888788888754322 1223444443 333333 22 23344566
Q ss_pred ceeEeecCCCCC-ceeee----EEeCCCeec--cceeecHH--HHHHHHHHHHHHhh
Q psy1702 148 QCWVGLRPHRYR-VRVEC----EQTPGGKVN--AGVGVVVG--RKKRLTDLLLTFNA 195 (200)
Q Consensus 148 ~~w~G~Rp~tpD-~~i~~----~~~~~g~~~--~G~~~a~~--~A~~~a~li~~~~~ 195 (200)
+.-.|+-|+... |.... .....|.+. .|.++..+ .|..+++.+.+...
T Consensus 277 ~~E~~~IPmg~~~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~ 333 (447)
T PLN02463 277 EDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLG 333 (447)
T ss_pred eeeeeEeeCCCCCCCCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHh
Confidence 666667777443 22111 112234444 67776665 56677776665543
No 36
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.10 E-value=0.012 Score=47.81 Aligned_cols=125 Identities=11% Similarity=0.068 Sum_probs=74.0
Q ss_pred HHHHHcCcEEEE-Eeccccccc----------cC---CCCEEEEcCCCCcccccCCCCce-----eecceEEEEeCCC--
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL----------GS---EYNTIFNCTGLGARTLCNDMHVI-----PVRGQTIRIKAPH-- 85 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~----------~g---~ad~VV~AaG~~s~~L~~~~pl~-----p~rGq~~~~~~~~-- 85 (200)
+.+++.|++++. .+|+++... .+ ++|.||.|+|.++. +...+.+. ...+....++.+.
T Consensus 99 ~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (295)
T TIGR02032 99 ERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSI-VAKKLGLRKEPRELGVAARAEVEMPDEE 177 (295)
T ss_pred HHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchH-HHHhcCCCCCCcceeeEEEEEEecCCcc
Confidence 778888999977 466665321 11 79999999999874 32211121 1112222232221
Q ss_pred -c-ce--EEe-----cCCeEEEEeCCCCCeEEEccceecCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCcceeEeecCC
Q psy1702 86 -I-TN--FYK-----NEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPH 156 (200)
Q Consensus 86 -~-~~--~i~-----~~~~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~~~ll~~~~~~~P~l~~~~v~~~w~G~Rp~ 156 (200)
. .. +.. ..+..|++|. .++++.+|-+..... +....++.++...+.+|.+...++.+.+.+..|+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~P~-~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 251 (295)
T TIGR02032 178 VDEDFVEVYIDRGISPGGYGWVFPK-GDGTANVGVGSRSAE-----EGEDLKKYLKDFLARRPELKDAETVEVIGAPIPI 251 (295)
T ss_pred cCcceEEEEcCCCcCCCceEEEEeC-CCCeEEEeeeeccCC-----CCCCHHHHHHHHHHhCcccccCcEEeeeceeecc
Confidence 1 11 111 1256788998 778788886644322 2345555666666678888777778878888877
Q ss_pred CC
Q psy1702 157 RY 158 (200)
Q Consensus 157 tp 158 (200)
..
T Consensus 252 ~~ 253 (295)
T TIGR02032 252 GR 253 (295)
T ss_pred CC
Confidence 53
No 37
>PRK06185 hypothetical protein; Provisional
Probab=95.50 E-value=0.39 Score=41.34 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=65.4
Q ss_pred HHHHHc-CcEEEE-Eecccccc------------ccC----CCCEEEEcCCCCcc--cccC-CCCceeecceEEEEeCCC
Q psy1702 27 VLFKTA-GGKVIE-KYISSFSE------------LGS----EYNTIFNCTGLGAR--TLCN-DMHVIPVRGQTIRIKAPH 85 (200)
Q Consensus 27 ~~~~~~-Gv~~~~-~~V~~l~~------------~~g----~ad~VV~AaG~~s~--~L~~-~~pl~p~rGq~~~~~~~~ 85 (200)
+++++. |++++. .+|+++.. ..+ ++|.||.|.|.+|. +.+. ..+..+.+++++.+..+.
T Consensus 116 ~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~ 195 (407)
T PRK06185 116 EEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPR 195 (407)
T ss_pred HHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEecCC
Confidence 555554 888876 35554421 011 79999999999984 2232 345566667766554321
Q ss_pred -cc----e--EEecCCeEEEEeCCCCCeEEEccceecCCCCCCCChHHHHHHHHHHHhhCCCCC
Q psy1702 86 -IT----N--FYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVG 142 (200)
Q Consensus 86 -~~----~--~i~~~~~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~~~ll~~~~~~~P~l~ 142 (200)
.. . .+..++.+.+.|. . +.+.++.+...+. .........+.+.+.+.+.+|.+.
T Consensus 196 ~~~~~~~~~~~~~~~g~~~llP~-~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~ 256 (407)
T PRK06185 196 EPDDPESLMGRFGPGQGLIMIDR-G-DYWQCGYVIPKGG-YAALRAAGLEAFRERVAELAPELA 256 (407)
T ss_pred CCCCCcccceEecCCcEEEEEcC-C-CeEEEEEEecCCC-chhhhhhhHHHHHHHHHHhCccHH
Confidence 01 1 1113445677787 5 5577776654332 223334456777788888888753
No 38
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.85 E-value=0.045 Score=47.82 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=31.8
Q ss_pred HHHHHcCcEEEEE-ecccccc----------cc---C--CCCEEEEcCCCC-cccccC
Q psy1702 27 VLFKTAGGKVIEK-YISSFSE----------LG---S--EYNTIFNCTGLG-ARTLCN 67 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~----------~~---g--~ad~VV~AaG~~-s~~L~~ 67 (200)
++++++|++++.+ +|.++.. .. . .||+||+|+|.| |..|..
T Consensus 271 ~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a 328 (419)
T TIGR03378 271 HRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVA 328 (419)
T ss_pred HHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHh
Confidence 8889999999985 6766431 11 1 799999999999 988853
No 39
>KOG0404|consensus
Probab=92.05 E-value=0.11 Score=41.69 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=32.8
Q ss_pred HHHHHcCcEEEEEecccccccc---------C--CCCEEEEcCCCCcccc
Q psy1702 27 VLFKTAGGKVIEKYISSFSELG---------S--EYNTIFNCTGLGARTL 65 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~~---------g--~ad~VV~AaG~~s~~L 65 (200)
++.++.|.+++...|.+++... . .+|.||+|+|+.++.|
T Consensus 78 kqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 78 KQSERFGTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRL 127 (322)
T ss_pred HHHHhhcceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeee
Confidence 7888899999998888876431 2 8999999999999988
No 40
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=91.53 E-value=5.6 Score=34.13 Aligned_cols=103 Identities=13% Similarity=0.144 Sum_probs=62.4
Q ss_pred CCCEEEEcCCCCcccccCCCCceeecceEEEEeCC-Ccce-EEe----c----CCeEEEEeCCCCCeEEEccceecCCCC
Q psy1702 50 EYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAP-HITN-FYK----N----EYDTYIIPNGFDSLVTLGGTQNFGHVN 119 (200)
Q Consensus 50 ~ad~VV~AaG~~s~~L~~~~pl~p~rGq~~~~~~~-~~~~-~i~----~----~~~~y~~p~~~~g~~~iG~t~~~~~~~ 119 (200)
.||.||.|.|..+..... .-.+--.|..+.+..| .+.. .++ . ...+|+.|. .++++++..|.....
T Consensus 126 ~A~~VI~A~G~~s~~~~~-~~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~-~~~~~lvE~T~~s~~-- 201 (370)
T TIGR01789 126 NARSVIDCRGFKPSAHLK-GGFQVFLGREMRLQEPHGLENPIIMDATVDQLAGYRFVYVLPL-GSHDLLIEDTYYADD-- 201 (370)
T ss_pred EeeEEEECCCCCCCcccc-ceeeEEEEEEEEEcCCCCCCccEEEeeeccCCCCceEEEECcC-CCCeEEEEEEeccCC--
Confidence 899999999988654322 2345556777777655 2222 222 1 146888999 888899976654321
Q ss_pred CCCChHHH-HHHHHHHHhhCCCCCCCCCcceeEeecCCCC
Q psy1702 120 RCVESTDT-ESILARTEELLPGVGACGGGQCWVGLRPHRY 158 (200)
Q Consensus 120 ~~~~~~~~-~~ll~~~~~~~P~l~~~~v~~~w~G~Rp~tp 158 (200)
...+.+.. +.+.+.+.+. .+...++++.-.|+-|++-
T Consensus 202 ~~l~~~~l~~~l~~~~~~~--g~~~~~i~~~e~g~iPm~~ 239 (370)
T TIGR01789 202 PLLDRNALSQRIDQYARAN--GWQNGTPVRHEQGVLPVLL 239 (370)
T ss_pred CCCCHHHHHHHHHHHHHHh--CCCceEEEEeeeeEEeeec
Confidence 22334443 3344444443 4445667777779999855
No 41
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=91.34 E-value=1.2 Score=39.54 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=96.8
Q ss_pred HHHHHc-CcEEEE-Eecccccccc-------------C-----CCCEEEEcCCCCcccccC--------CCCceeecceE
Q psy1702 27 VLFKTA-GGKVIE-KYISSFSELG-------------S-----EYNTIFNCTGLGARTLCN--------DMHVIPVRGQT 78 (200)
Q Consensus 27 ~~~~~~-Gv~~~~-~~V~~l~~~~-------------g-----~ad~VV~AaG~~s~~L~~--------~~pl~p~rGq~ 78 (200)
+.+++. |+++.. ++|++|++.. + .|+.|++.||.+|=.|+. ..-..|+.||-
T Consensus 189 ~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyggfPVsG~f 268 (488)
T PF06039_consen 189 EYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQF 268 (488)
T ss_pred HHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccCCCcccceE
Confidence 666666 899887 6899886531 1 799999999999887753 35568999999
Q ss_pred EEEeCCCc----ceEEec--C-C-eEEEEeCCCCC-------eEEEccceec------CC--CC--CCC-----------
Q psy1702 79 IRIKAPHI----TNFYKN--E-Y-DTYIIPNGFDS-------LVTLGGTQNF------GH--VN--RCV----------- 122 (200)
Q Consensus 79 ~~~~~~~~----~~~i~~--~-~-~~y~~p~~~~g-------~~~iG~t~~~------~~--~~--~~~----------- 122 (200)
++++.|.+ +.-++. . + .-.-+|. .|- .+++|-+..+ .+ +| ..+
T Consensus 269 l~~~n~~vv~~H~aKVYgka~vGaPPmSvPH-lDtRiidGk~~llFGP~Agfs~KfLK~GS~~Dl~~S~~~~N~~~ml~~ 347 (488)
T PF06039_consen 269 LRCKNPEVVAQHNAKVYGKASVGAPPMSVPH-LDTRIIDGKKSLLFGPFAGFSPKFLKNGSYLDLFKSLRPDNLFPMLAV 347 (488)
T ss_pred EecCCHHHHHHhcceeeeeCCCCCCCccCcc-CCchhcCCCcceeecCccccchHHhcCCcHHHHHhhcCcccHHHHHHH
Confidence 99876532 111110 0 0 0011222 221 2445543211 00 01 000
Q ss_pred ---ChHH-----------HHHHHHHHHhhCCCCCCCCCcceeEeecCCC--CCc------eeeeEEe--CCCeeccceee
Q psy1702 123 ---ESTD-----------TESILARTEELLPGVGACGGGQCWVGLRPHR--YRV------RVECEQT--PGGKVNAGVGV 178 (200)
Q Consensus 123 ---~~~~-----------~~~ll~~~~~~~P~l~~~~v~~~w~G~Rp~t--pD~------~i~~~~~--~~g~~~~G~~~ 178 (200)
+.+- .+.-++.+++++|.+...+..-.-+|.|+.- +|+ ..|.+-+ .+|.+..-+|-
T Consensus 348 ~~~n~~L~kYLi~q~~~s~~~r~~~Lr~f~P~a~~~DW~l~~AGqRvQiIkk~~~kgG~L~fGTevI~s~dGsiaaLLGA 427 (488)
T PF06039_consen 348 GLDNFDLTKYLIGQVLQSKEDRMEALRKFYPSAKPEDWELITAGQRVQIIKKDEKKGGVLQFGTEVITSADGSIAALLGA 427 (488)
T ss_pred HhhhhhHHHHHHHhhccCHHHHHHHHHHhCccCChhceEEEecCceeeEEecCCCCCcEEecCceEEecCCCceEeeccC
Confidence 1122 2234567788999988777767779999863 342 1233333 24555555777
Q ss_pred cHH---HHHHHHHHHHHHhhh
Q psy1702 179 VVG---RKKRLTDLLLTFNAE 196 (200)
Q Consensus 179 a~~---~A~~~a~li~~~~~~ 196 (200)
||| +...|.|++.+-..+
T Consensus 428 SPGASTav~iMl~vl~~cF~~ 448 (488)
T PF06039_consen 428 SPGASTAVSIMLDVLERCFPE 448 (488)
T ss_pred CCChhhhHHHHHHHHHHHhHH
Confidence 887 556666777665443
No 42
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=91.32 E-value=8.9 Score=33.08 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=85.8
Q ss_pred HHHHHHcCcEEEE-Eecccccccc---------C----CCCEEEEcCCCCcccccC-CCC-ceeec---ceEEEEeCC--
Q psy1702 26 TVLFKTAGGKVIE-KYISSFSELG---------S----EYNTIFNCTGLGARTLCN-DMH-VIPVR---GQTIRIKAP-- 84 (200)
Q Consensus 26 ~~~~~~~Gv~~~~-~~V~~l~~~~---------g----~ad~VV~AaG~~s~~L~~-~~p-l~p~r---Gq~~~~~~~-- 84 (200)
.+++++.|++++. ..|+.+.... + .++.||.|.|+-+.-.-. ... ..|.. ++.-.+.-|
T Consensus 102 a~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~~ 181 (396)
T COG0644 102 AERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDD 181 (396)
T ss_pred HHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEecCCC
Confidence 4889999999998 4677665432 1 599999999986542210 111 11111 222222222
Q ss_pred C-cceEEe------cCCeEEEEeCCCCCeEEEccceecCCCCCCCChHHHHHHHHHHHhhCCC---CCCCCCcceeEeec
Q psy1702 85 H-ITNFYK------NEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPG---VGACGGGQCWVGLR 154 (200)
Q Consensus 85 ~-~~~~i~------~~~~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~~~ll~~~~~~~P~---l~~~~v~~~w~G~R 154 (200)
. ...++. ..++.+++|. .++...+|-...... ...... . +.+++.....+. +...++...-+|.-
T Consensus 182 ~~~~~~~~~~~~~~~~Gy~wifP~-~~~~~~VG~g~~~~~--~~~~~~-~-~~l~~f~~~~~~~~~~~~~~~~~~~~~~i 256 (396)
T COG0644 182 GDVEEFLYGPLDVGPGGYGWIFPL-GDGHANVGIGVLLDD--PSLSPF-L-ELLERFKEHPAIRKLLLGGKILEYAAGGI 256 (396)
T ss_pred CceEEEEecCCccCCCceEEEEEC-CCceEEEEEEEecCC--cCCCch-H-HHHHHHHhCcccchhccCCceEEEeeeec
Confidence 1 112221 1356789999 888788887755433 122221 1 333333332221 11245666666776
Q ss_pred CCC-CC--c-------eeeeEEeCCCeec----cceeecHHHHHHHHHHHHHHh
Q psy1702 155 PHR-YR--V-------RVECEQTPGGKVN----AGVGVVVGRKKRLTDLLLTFN 194 (200)
Q Consensus 155 p~t-pD--~-------~i~~~~~~~g~~~----~G~~~a~~~A~~~a~li~~~~ 194 (200)
|.. +. | .+|. ..|++. +|+.+|.-+|+.+++.|.+..
T Consensus 257 p~~g~~~~~~~~~~~~lvGD---AAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~ 307 (396)
T COG0644 257 PEGGPASRPLVGDGVLLVGD---AAGFVNPLTGEGIRYAIKSGKLAAEAIAEAL 307 (396)
T ss_pred ccCCcCCCccccCCEEEEec---cccCCCCcccCcHHHHHHHHHHHHHHHHHHH
Confidence 654 22 1 2222 234443 566666668888888877754
No 43
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=91.11 E-value=4.6 Score=34.55 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=48.7
Q ss_pred HHHHHcCcEEEE-Eeccccccc---------cC---CCCEEEEcCCCCcccccC----CCCc--eeecceEEEEeC--CC
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGARTLCN----DMHV--IPVRGQTIRIKA--PH 85 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s~~L~~----~~pl--~p~rGq~~~~~~--~~ 85 (200)
+++++.|++++. .+|++++.. .+ .+|.||.|.|.+|. +.. ..+. ++.+|++..++. +.
T Consensus 121 ~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~-vr~~~g~~~~~~~~~~~~~~~~v~~~~~~ 199 (392)
T PRK08773 121 AALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST-LRELAGLPVSRHDYAQRGVVAFVDTEHPH 199 (392)
T ss_pred HHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch-HHHhhcCCceEEEeccEEEEEEEEccCCC
Confidence 677888999987 467665431 12 79999999999984 422 1222 345566655543 21
Q ss_pred cce---EEecCCeEEEEeCCCCCeEEEc
Q psy1702 86 ITN---FYKNEYDTYIIPNGFDSLVTLG 110 (200)
Q Consensus 86 ~~~---~i~~~~~~y~~p~~~~g~~~iG 110 (200)
... .+..++.+++.|. .+++..+.
T Consensus 200 ~~~~~~~~~~~g~~~~lP~-~~~~~~~~ 226 (392)
T PRK08773 200 QATAWQRFLPTGPLALLPF-ADGRSSIV 226 (392)
T ss_pred CCEEEEEeCCCCcEEEEEC-CCCceEEE
Confidence 111 1123445778888 66645444
No 44
>PRK08244 hypothetical protein; Provisional
Probab=88.20 E-value=18 Score=32.09 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=45.4
Q ss_pred HHHHHcCcEEEEE-eccccccc-----------cC----CCCEEEEcCCCCc--ccccC------CCCceeecceEEEEe
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL-----------GS----EYNTIFNCTGLGA--RTLCN------DMHVIPVRGQTIRIK 82 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~-----------~g----~ad~VV~AaG~~s--~~L~~------~~pl~p~rGq~~~~~ 82 (200)
+.+++.|++++.. +|++++.. .+ ++|.||.|.|.+| ++.+. +.......+.+....
T Consensus 108 ~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~ 187 (493)
T PRK08244 108 EHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKD 187 (493)
T ss_pred HHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecC
Confidence 6677789998873 66655321 12 6899999999998 33332 112233333332211
Q ss_pred CCCc-ceEEe-cCCeEEEEeCCCCCeEEEc
Q psy1702 83 APHI-TNFYK-NEYDTYIIPNGFDSLVTLG 110 (200)
Q Consensus 83 ~~~~-~~~i~-~~~~~y~~p~~~~g~~~iG 110 (200)
++.. ....+ .++.++++|. .++...+.
T Consensus 188 ~~~~~~~~~~~~~g~~~~~P~-~~~~~~~~ 216 (493)
T PRK08244 188 PPPSSVLSLCTREGGVMIVPL-SGGIYRVL 216 (493)
T ss_pred CCCcceeEEEeCCceEEEEEC-CCCeEEEE
Confidence 1111 11122 3455788898 77755443
No 45
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=87.06 E-value=18 Score=30.91 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=32.0
Q ss_pred cChhhhhHh-HHHHHHcCcEEEEEecccccc---------c------c---C--CCCEEEEcCCCCcc
Q psy1702 17 MSEEELAVY-TVLFKTAGGKVIEKYISSFSE---------L------G---S--EYNTIFNCTGLGAR 63 (200)
Q Consensus 17 ~~~~~~~~~-~~~~~~~Gv~~~~~~V~~l~~---------~------~---g--~ad~VV~AaG~~s~ 63 (200)
+..+.|+.+ -+++.+.|++++...|+++.. . . . .||.||.|.|.+|.
T Consensus 89 ~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 89 VRREVFDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred eeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 455555553 477788899998766655421 0 1 1 69999999999885
No 46
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=85.11 E-value=0.79 Score=39.98 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=43.5
Q ss_pred HHHHHcCcEEEE-Eecccccccc-----C----CCCEEEEcCCCCcccccCCC-Cceee-cceEEEE
Q psy1702 27 VLFKTAGGKVIE-KYISSFSELG-----S----EYNTIFNCTGLGARTLCNDM-HVIPV-RGQTIRI 81 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~~-----g----~ad~VV~AaG~~s~~L~~~~-pl~p~-rGq~~~~ 81 (200)
+.++++||+++. ..|++++... + .++.||-|||.-++.+..++ ++..- +|++++-
T Consensus 217 ~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~ 283 (405)
T COG1252 217 RALEKLGVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVN 283 (405)
T ss_pred HHHHHCCCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeC
Confidence 788999999998 4788887542 2 69999999999999998774 67655 4887654
No 47
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=84.17 E-value=27 Score=30.19 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=30.7
Q ss_pred cChhhhhH-hHHHHHHcCcEEEEEeccccc--------------cc------c--C--CCCEEEEcCCCCcc
Q psy1702 17 MSEEELAV-YTVLFKTAGGKVIEKYISSFS--------------EL------G--S--EYNTIFNCTGLGAR 63 (200)
Q Consensus 17 ~~~~~~~~-~~~~~~~~Gv~~~~~~V~~l~--------------~~------~--g--~ad~VV~AaG~~s~ 63 (200)
+...+|+. +-+++.+.|++++..++.+++ .. . . .|+.||.|.|..|.
T Consensus 90 v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~ 161 (398)
T TIGR02028 90 LRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSR 161 (398)
T ss_pred eeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchH
Confidence 44444554 347788889999775544331 00 1 1 79999999999885
No 48
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=80.37 E-value=6.8 Score=33.28 Aligned_cols=83 Identities=11% Similarity=0.061 Sum_probs=47.7
Q ss_pred HHHHHcC-cEEEEEeccccccc---------cC---CCCEEEEcCCCCccc--ccC-CCCceeec--ceEEEEeCCC--c
Q psy1702 27 VLFKTAG-GKVIEKYISSFSEL---------GS---EYNTIFNCTGLGART--LCN-DMHVIPVR--GQTIRIKAPH--I 86 (200)
Q Consensus 27 ~~~~~~G-v~~~~~~V~~l~~~---------~g---~ad~VV~AaG~~s~~--L~~-~~pl~p~r--Gq~~~~~~~~--~ 86 (200)
+++++.| ++++..+|++++.. .+ .+|.||.|.|.+|.- .+. ..+..+.. +++..++.+. .
T Consensus 119 ~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (388)
T PRK07608 119 AALRFQPNLTWFPARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHR 198 (388)
T ss_pred HHHHhCCCcEEEcceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCC
Confidence 7777887 88875567766431 12 699999999999852 122 33444433 4444443321 1
Q ss_pred ce--EEe-cCCeEEEEeCCCCCeEEEc
Q psy1702 87 TN--FYK-NEYDTYIIPNGFDSLVTLG 110 (200)
Q Consensus 87 ~~--~i~-~~~~~y~~p~~~~g~~~iG 110 (200)
.. ... .++.+++.|. .++++.+.
T Consensus 199 ~~~~~~~~~~~~~~~~p~-~~~~~~~~ 224 (388)
T PRK07608 199 GTAYQWFRDDGILALLPL-PDGHVSMV 224 (388)
T ss_pred CEEEEEecCCCCEEEeEC-CCCCeEEE
Confidence 11 112 3345677888 67755554
No 49
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=74.25 E-value=6.8 Score=31.88 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=25.9
Q ss_pred HHHHHHcCcEEEEE-ecccccccc-----------------------C--CCCEEEEcCCCCcc
Q psy1702 26 TVLFKTAGGKVIEK-YISSFSELG-----------------------S--EYNTIFNCTGLGAR 63 (200)
Q Consensus 26 ~~~~~~~Gv~~~~~-~V~~l~~~~-----------------------g--~ad~VV~AaG~~s~ 63 (200)
-+++++.|++++.. +|.++.... . .|+.||+|+|.++.
T Consensus 111 ~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 111 AAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred HHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 37788899999874 666553210 0 57888888887775
No 50
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=73.08 E-value=51 Score=29.20 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=24.6
Q ss_pred HHHHHcCcEEEEEeccccccc-----------cC---CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEKYISSFSEL-----------GS---EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~-----------~g---~ad~VV~AaG~~s~ 63 (200)
+.|++.||++++++|..+... .+ +||.||-|+|..+.
T Consensus 162 ~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 162 RHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 888889999998766554321 12 89999999997654
No 51
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=68.87 E-value=4.9 Score=36.69 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=28.2
Q ss_pred HHHHHcCcEEEEE-eccccccc------------cC----CC-CEEEEcCCCCccc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL------------GS----EY-NTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~------------~g----~a-d~VV~AaG~~s~~ 64 (200)
+++++.|++++.. +|++|... .+ .+ +.||+|+|.|+..
T Consensus 225 ~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 225 KSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred HHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccC
Confidence 7788899999874 67665421 11 46 8999999999863
No 52
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=68.80 E-value=83 Score=27.80 Aligned_cols=47 Identities=17% Similarity=0.342 Sum_probs=31.7
Q ss_pred cChhhhhH-hHHHHHHcCcEEEEEeccccc--------------cc------c-C---CCCEEEEcCCCCcc
Q psy1702 17 MSEEELAV-YTVLFKTAGGKVIEKYISSFS--------------EL------G-S---EYNTIFNCTGLGAR 63 (200)
Q Consensus 17 ~~~~~~~~-~~~~~~~~Gv~~~~~~V~~l~--------------~~------~-g---~ad~VV~AaG~~s~ 63 (200)
+..++|+. +-++|++.|++++...+.++. .. . . +||.||-|.|+.|.
T Consensus 129 v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~ 200 (450)
T PLN00093 129 VRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSR 200 (450)
T ss_pred ecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchH
Confidence 45555666 357788899999775444332 00 1 1 79999999999875
No 53
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=67.26 E-value=8.3 Score=32.58 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=29.2
Q ss_pred HHHHHcCcEEEEEecccccccc-------C---CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEKYISSFSELG-------S---EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~~-------g---~ad~VV~AaG~~s~ 63 (200)
+.+++.|++++..+|++++... + ++|.+|+|+|.-..
T Consensus 62 ~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 62 RLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred HHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCC
Confidence 6677889999998888876431 2 79999999997654
No 54
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=66.40 E-value=6 Score=35.17 Aligned_cols=37 Identities=8% Similarity=0.007 Sum_probs=28.8
Q ss_pred HHHHHcCcEEEEE-eccccccc----------cC---CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL----------GS---EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~----------~g---~ad~VV~AaG~~s~ 63 (200)
+.++++|++|+.. +|++|... .+ .+|.||+|+|+|..
T Consensus 237 ~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 237 KGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDT 287 (493)
T ss_pred HHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence 8889999999984 77776432 12 69999999999865
No 55
>PRK08401 L-aspartate oxidase; Provisional
Probab=65.28 E-value=8.3 Score=34.13 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=29.2
Q ss_pred HHHHHcCcEEEEEecccccccc---------C---CCCEEEEcCCCCcccc
Q psy1702 27 VLFKTAGGKVIEKYISSFSELG---------S---EYNTIFNCTGLGARTL 65 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~~---------g---~ad~VV~AaG~~s~~L 65 (200)
+++++.|++++...++.+.... + .++.||+|+|.|+...
T Consensus 128 ~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 128 KHARELGVNFIRGFAEELAIKNGKAYGVFLDGELLKFDATVIATGGFSGLF 178 (466)
T ss_pred HHHHhcCCEEEEeEeEEEEeeCCEEEEEEECCEEEEeCeEEECCCcCcCCC
Confidence 7788899999876666554211 1 6899999999998754
No 56
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=64.91 E-value=86 Score=26.52 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=44.1
Q ss_pred HHHHH-cCcEEEE-Eeccccccc---------cC---CCCEEEEcCCCCcccc--cC-CCCceeecceEEEEeC---C--
Q psy1702 27 VLFKT-AGGKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGARTL--CN-DMHVIPVRGQTIRIKA---P-- 84 (200)
Q Consensus 27 ~~~~~-~Gv~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s~~L--~~-~~pl~p~rGq~~~~~~---~-- 84 (200)
+.+.+ .|++++. .+|++++.. .+ .+|.||.|.|.+|.-. +. ..+..+. ++...+.. .
T Consensus 120 ~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~-~~~~~~~~~~~~~~ 198 (395)
T PRK05732 120 ALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPY-EQVAVIANVTTSEA 198 (395)
T ss_pred HHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhhHHhhCCCccceec-CCEEEEEEEEecCC
Confidence 44545 4788886 467665431 12 7999999999998622 11 2333443 44333211 1
Q ss_pred CcceEE---ecCCeEEEEeCCCCCeEEEc
Q psy1702 85 HITNFY---KNEYDTYIIPNGFDSLVTLG 110 (200)
Q Consensus 85 ~~~~~i---~~~~~~y~~p~~~~g~~~iG 110 (200)
.....+ ...+..+++|. .+++..+.
T Consensus 199 ~~~~~~~~~~~~g~~~~~p~-~~g~~~~~ 226 (395)
T PRK05732 199 HQGRAFERFTEHGPLALLPM-SDGRCSLV 226 (395)
T ss_pred CCCEEEEeecCCCCEEEeEC-CCCCeEEE
Confidence 111111 13345788898 77755443
No 57
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=63.94 E-value=11 Score=30.41 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=28.9
Q ss_pred HHHHHHcCcEEEEEeccccccc---------cC---CCCEEEEcCCCCcc
Q psy1702 26 TVLFKTAGGKVIEKYISSFSEL---------GS---EYNTIFNCTGLGAR 63 (200)
Q Consensus 26 ~~~~~~~Gv~~~~~~V~~l~~~---------~g---~ad~VV~AaG~~s~ 63 (200)
-+.+++.|++++..+|++++.. .+ .+|.||+|+|.+..
T Consensus 64 ~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 64 KEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred HHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 3778889999988777776532 12 79999999998654
No 58
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=63.66 E-value=13 Score=31.09 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=30.4
Q ss_pred HHHHHcCcEEEEEecccccccc---------C--CCCEEEEcCCCCcccc
Q psy1702 27 VLFKTAGGKVIEKYISSFSELG---------S--EYNTIFNCTGLGARTL 65 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~~---------g--~ad~VV~AaG~~s~~L 65 (200)
+.+++.|+++....|.+++... + +|+.||+|+|...+.+
T Consensus 69 ~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 69 EQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKL 118 (305)
T ss_pred HHHhhcCeEEEEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCcccCC
Confidence 7777889999887666655431 2 8999999999998876
No 59
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=62.70 E-value=9.3 Score=33.27 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=29.0
Q ss_pred HHHHHcCcEEEE-Eecccccccc---------C---CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSELG---------S---EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~~---------g---~ad~VV~AaG~~s 62 (200)
++|++.||+++. ++|.+++... + .||.+|+|+|--|
T Consensus 119 ~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 119 KELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred HHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcC
Confidence 899999999998 5888876542 2 7999999999443
No 60
>PRK06847 hypothetical protein; Provisional
Probab=61.56 E-value=10 Score=32.00 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=28.7
Q ss_pred HHHHHcCcEEEEE-eccccccc---------cC---CCCEEEEcCCCCccc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL---------GS---EYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~---------~g---~ad~VV~AaG~~s~~ 64 (200)
+.+++.|++++.. +|++++.. .+ .+|.||.|.|.++..
T Consensus 115 ~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 115 DAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence 6777789999884 67766532 12 789999999999853
No 61
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=59.67 E-value=8.6 Score=33.60 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=28.1
Q ss_pred HHHHHcCcEEEEE-eccccccc---------cC---CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL---------GS---EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~---------~g---~ad~VV~AaG~~s~ 63 (200)
+++++.|++++.. +|+++... .+ .|+.||.|.|.++.
T Consensus 116 ~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s~ 165 (428)
T PRK10157 116 EQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSI 165 (428)
T ss_pred HHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCHH
Confidence 7788899999874 67765421 12 79999999999763
No 62
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=57.86 E-value=11 Score=32.19 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=47.0
Q ss_pred HHHHHcCcEEEE-Eeccccccc---------cC---CCCEEEEcCCCCcccccC--CCC----ceeecceEEEEeCCC--
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGARTLCN--DMH----VIPVRGQTIRIKAPH-- 85 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s~~L~~--~~p----l~p~rGq~~~~~~~~-- 85 (200)
+++++.|++++. .+|++++.. .+ .+|.||.|.|.+|. +.. .++ -++..+.+..++...
T Consensus 119 ~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (403)
T PRK07333 119 KRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK-LRELAGIKTVGWDYGQSGIVCTVEHERPH 197 (403)
T ss_pred HHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHcCCCcccccCCCEEEEEEEEcCCCC
Confidence 777788999987 467776432 12 79999999999986 321 111 233445444443321
Q ss_pred cce--EEe-cCCeEEEEeCCCCCeEEE
Q psy1702 86 ITN--FYK-NEYDTYIIPNGFDSLVTL 109 (200)
Q Consensus 86 ~~~--~i~-~~~~~y~~p~~~~g~~~i 109 (200)
... ... .++..+++|. .+++..+
T Consensus 198 ~~~~~~~~~~~g~~~~~Pl-~~~~~~~ 223 (403)
T PRK07333 198 GGRAEEHFLPAGPFAILPL-KGNRSSL 223 (403)
T ss_pred CCEEEEEeCCCCceEEeEC-CCCCeEE
Confidence 111 111 3345778888 6665544
No 63
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=57.67 E-value=20 Score=34.97 Aligned_cols=54 Identities=19% Similarity=0.413 Sum_probs=32.6
Q ss_pred cccCCceecChhhhhHhHHHHHHcCcEEEEEeccc----cccccC-CCCEEEEcCCCCcc
Q psy1702 9 PVLPVYKRMSEEELAVYTVLFKTAGGKVIEKYISS----FSELGS-EYNTIFNCTGLGAR 63 (200)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~V~~----l~~~~g-~ad~VV~AaG~~s~ 63 (200)
-++|+|| ++++=+...-+.+++.|++|+...+.+ +++... .+|+||+|+|++.+
T Consensus 347 yGIP~~r-lp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~~~l~~~~yDAV~LAtGA~~p 405 (944)
T PRK12779 347 YGIPEFR-LPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLEDLKAAGFWKIFVGTGAGLP 405 (944)
T ss_pred ccCCCCc-ChHHHHHHHHHHHHhhcCeEEEeEEeccEEeHHHhccccCCEEEEeCCCCCC
Confidence 3466665 222222222478889999998753322 222222 69999999999854
No 64
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=57.19 E-value=18 Score=32.82 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=34.5
Q ss_pred CCceecChhhhhH-hHHHHHHcCcEEEEEeccccccc---------cC--CCCEEEEcCCCCcccc
Q psy1702 12 PVYKRMSEEELAV-YTVLFKTAGGKVIEKYISSFSEL---------GS--EYNTIFNCTGLGARTL 65 (200)
Q Consensus 12 ~~~~~~~~~~~~~-~~~~~~~~Gv~~~~~~V~~l~~~---------~g--~ad~VV~AaG~~s~~L 65 (200)
++++.+...++.. +-+.+++.|++++..+|++++.. .+ .++.||+|+|.+.+.+
T Consensus 52 pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 52 PGILNTTGPELMQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKL 117 (555)
T ss_pred CCCcCCCHHHHHHHHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCCEEEEeEEEECCCCccCCC
Confidence 3444444444433 22677788999987777665421 12 6889999999986543
No 65
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=57.13 E-value=11 Score=28.03 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=21.2
Q ss_pred HcCcEEEE--Eecccccccc---------C---CCCEEEEcCCC
Q psy1702 31 TAGGKVIE--KYISSFSELG---------S---EYNTIFNCTGL 60 (200)
Q Consensus 31 ~~Gv~~~~--~~V~~l~~~~---------g---~ad~VV~AaG~ 60 (200)
..|+++.. .+|++++... | .+|.||+|+|.
T Consensus 112 ~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 112 PAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 34666654 5788876532 2 89999999996
No 66
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=56.03 E-value=8.9 Score=33.54 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=21.4
Q ss_pred HHHHHcCcEEEE-Eeccccccc----------cC---CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL----------GS---EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~----------~g---~ad~VV~AaG~~s 62 (200)
++++++|++++. .+|.+++.. .+ .||.||+|+|--|
T Consensus 117 ~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 117 EELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred HHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence 788999999997 578877531 11 8999999999655
No 67
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=53.53 E-value=18 Score=31.40 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=27.3
Q ss_pred HHHHHcCcEEEEE-ecccccccc--------C---CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSELG--------S---EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~~--------g---~ad~VV~AaG~~s 62 (200)
+++++.|++++.. .|++++... + .+|.||+|+|.++
T Consensus 113 ~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 113 NELKELGVEILTNSKVKSIKKDDNGFGVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHCCCEEEeCCEEEEEEecCCeEEEEECCcEEEcCEEEECCCCcc
Confidence 7788899999874 677664321 1 7999999999876
No 68
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=52.69 E-value=14 Score=31.76 Aligned_cols=37 Identities=3% Similarity=0.064 Sum_probs=27.5
Q ss_pred HHHHHcCcEEEEE-eccccccc---------cC---CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL---------GS---EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~---------~g---~ad~VV~AaG~~s~ 63 (200)
+++++.|++++.. +|.+++.. .+ .+|.||.|.|.||.
T Consensus 120 ~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 120 ERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 6677789998873 66665432 12 89999999999984
No 69
>PRK06834 hypothetical protein; Provisional
Probab=51.10 E-value=16 Score=32.69 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=28.4
Q ss_pred HHHHHcCcEEEE-Eeccccccc---------cC---CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s~ 63 (200)
+++++.|++++. .+|++++.. .+ .+|.||.|.|.+|.
T Consensus 108 ~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 108 EWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 777888999987 477776532 12 79999999999984
No 70
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=50.77 E-value=19 Score=31.11 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=27.6
Q ss_pred HHHHHcCcEEEE-Eeccccccc-------c--C--CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL-------G--S--EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~-------~--g--~ad~VV~AaG~~s 62 (200)
.+|+++||+++. .+|++++.. . + .||.||+|+|--|
T Consensus 94 ~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 94 KRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 888999999998 478777321 1 1 7999999999644
No 71
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=49.94 E-value=20 Score=31.25 Aligned_cols=37 Identities=14% Similarity=0.009 Sum_probs=28.1
Q ss_pred HHHHHcCcEEEE-Eeccccccc-------------cC-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL-------------GS-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~-------------~g-----~ad~VV~AaG~~s~ 63 (200)
+.+++.|++++. .+|++|... .+ .++.||+|+|.++.
T Consensus 138 ~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 138 KKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 788889999988 467766421 01 57999999999886
No 72
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=48.54 E-value=25 Score=29.89 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=33.5
Q ss_pred HHHHHcCcEEEE-Eeccccccc---------cC---CCCEEEEcCCCCcc-cccCCCCceeecc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGAR-TLCNDMHVIPVRG 76 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s~-~L~~~~pl~p~rG 76 (200)
+.+++.|++++. .+|.+++.. .+ .+|.||+|+|...+ .++....+.-.+|
T Consensus 191 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~g 254 (377)
T PRK04965 191 HRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRG 254 (377)
T ss_pred HHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCCC
Confidence 778889999987 466665421 12 79999999998875 3444333433466
No 73
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=48.39 E-value=10 Score=28.82 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=23.4
Q ss_pred HHHHHcCcEEEE-Eecccccccc---------C---CCCEEEEcCCCCccc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSELG---------S---EYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~~---------g---~ad~VV~AaG~~s~~ 64 (200)
..+++.|.+++. .+|++++... + .||.||+|+|.++..
T Consensus 90 ~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p 140 (203)
T PF13738_consen 90 EYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHP 140 (203)
T ss_dssp HHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB
T ss_pred HHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCC
Confidence 667778888765 4677775432 2 699999999987553
No 74
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=47.07 E-value=17 Score=30.68 Aligned_cols=37 Identities=3% Similarity=-0.004 Sum_probs=27.6
Q ss_pred HHHHH-cCcEEEE-Eeccccccc---------cC---CCCEEEEcCCCCcc
Q psy1702 27 VLFKT-AGGKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~-~Gv~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s~ 63 (200)
+++++ .|++++. .+|++++.. .+ .||.||.|.|.+|.
T Consensus 113 ~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 113 SRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH
Confidence 66666 4999986 577776432 12 79999999999985
No 75
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=47.05 E-value=25 Score=30.64 Aligned_cols=37 Identities=5% Similarity=-0.064 Sum_probs=26.8
Q ss_pred HHHHHcCcEEEE-Eeccccccc--c----------C----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL--G----------S----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~--~----------g----~ad~VV~AaG~~s~ 63 (200)
++++++|++++. .+|++|... . + .++.||+|+|-++.
T Consensus 131 ~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 131 SSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 778899999988 467665421 1 1 68999999996543
No 76
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=46.49 E-value=33 Score=33.74 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=32.8
Q ss_pred cccCCceecChhhhhHhHHHHHHcCcEEEEE-ec-cccccccC-CCCEEEEcCCCCcc
Q psy1702 9 PVLPVYKRMSEEELAVYTVLFKTAGGKVIEK-YI-SSFSELGS-EYNTIFNCTGLGAR 63 (200)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-~V-~~l~~~~g-~ad~VV~AaG~~s~ 63 (200)
.++|+|| ++++-+..--+.+++.|++|+.. .| ..++.... .+|+||+|+|++..
T Consensus 580 ~~IP~~R-lp~evL~~die~l~~~GVe~~~gt~Vdi~le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 580 NIIPQFR-IPAELIQHDIEFVKAHGVKFEFGCSPDLTVEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred eeccccc-ccHHHHHHHHHHHHHcCCEEEeCceeEEEhhhheeccCCEEEECcCCCCC
Confidence 3566665 23322222237788899999884 44 12222212 59999999999854
No 77
>PRK10015 oxidoreductase; Provisional
Probab=46.38 E-value=21 Score=31.24 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=27.7
Q ss_pred HHHHHcCcEEEEE-eccccccc---------cC---CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL---------GS---EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~---------~g---~ad~VV~AaG~~s~ 63 (200)
+++++.|++++.. +|+++... .+ .||.||.|.|..+.
T Consensus 116 ~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s~ 165 (429)
T PRK10015 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSM 165 (429)
T ss_pred HHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcchh
Confidence 7788889999874 67765432 11 79999999998764
No 78
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=45.67 E-value=25 Score=32.58 Aligned_cols=38 Identities=8% Similarity=0.052 Sum_probs=26.7
Q ss_pred HHHHHc-CcEEEEEeccccccc----------cC---CCCEEEEcCCCCccc
Q psy1702 27 VLFKTA-GGKVIEKYISSFSEL----------GS---EYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~-Gv~~~~~~V~~l~~~----------~g---~ad~VV~AaG~~s~~ 64 (200)
+.+++. |+++++..|.++... .| .|+.||+|+|.|++.
T Consensus 108 e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL~g 159 (618)
T PRK05192 108 EILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFLRG 159 (618)
T ss_pred HHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcchhc
Confidence 455555 889888777765421 12 789999999988753
No 79
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=45.66 E-value=23 Score=33.62 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=29.6
Q ss_pred HHHHHHcCcEEEEE-eccccccccCCCCEEEEcCCCCcc
Q psy1702 26 TVLFKTAGGKVIEK-YISSFSELGSEYNTIFNCTGLGAR 63 (200)
Q Consensus 26 ~~~~~~~Gv~~~~~-~V~~l~~~~g~ad~VV~AaG~~s~ 63 (200)
-++|++.|++++.. +|+++.+....+|.||.|.|.+|.
T Consensus 104 ~e~a~~~GV~i~~g~~v~~i~~~~~~~D~VVgADG~~S~ 142 (765)
T PRK08255 104 QARCEELGVKLVFETEVPDDQALAADADLVIASDGLNSR 142 (765)
T ss_pred HHHHHHcCCEEEeCCccCchhhhhcCCCEEEEcCCCCHH
Confidence 38888899999884 677765432379999999999984
No 80
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=45.48 E-value=21 Score=30.04 Aligned_cols=37 Identities=3% Similarity=0.056 Sum_probs=27.8
Q ss_pred HHHHHcC-cEEEE-Eeccccccc---------cC---CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAG-GKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~G-v~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s~ 63 (200)
+++++.| ++++. .+|++++.. .+ .+|.||.|.|.+|.
T Consensus 114 ~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 114 ERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 6777787 88887 467776432 12 79999999999985
No 81
>PRK06184 hypothetical protein; Provisional
Probab=44.44 E-value=25 Score=31.25 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=28.2
Q ss_pred HHHHHcCcEEEEE-eccccccc-----------c-C---CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL-----------G-S---EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~-----------~-g---~ad~VV~AaG~~s~ 63 (200)
+++++.|++++.. +|++++.. . + .+|.||.|.|.+|.
T Consensus 117 ~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 117 ERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 7777889999874 67766431 1 1 79999999999984
No 82
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=44.30 E-value=39 Score=33.23 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=33.9
Q ss_pred ccCCceecChhhhhHhHHHHHHcCcEEEEEecccc----cccc--CCCCEEEEcCCCCccc
Q psy1702 10 VLPVYKRMSEEELAVYTVLFKTAGGKVIEKYISSF----SELG--SEYNTIFNCTGLGART 64 (200)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~V~~l----~~~~--g~ad~VV~AaG~~s~~ 64 (200)
++|.|+ ++++-+....+.+++.|++++...+.+. +... ..+|.||+|+|++...
T Consensus 472 gip~~r-l~~e~~~~~~~~l~~~Gv~~~~~~~vg~~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 472 GIPSFR-LPRDIIDREVQRLVDIGVKIETNKVIGKTFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred cCCccC-CCHHHHHHHHHHHHHCCCEEEeCCccCCccCHHHHhhccCCCEEEEecCCCCCC
Confidence 466664 3333333345888999999988643322 2211 1689999999998543
No 83
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=44.18 E-value=29 Score=32.11 Aligned_cols=36 Identities=6% Similarity=-0.020 Sum_probs=25.9
Q ss_pred HHHHHc-CcEEEEEeccccccc-----------cC---CCCEEEEcCCCCc
Q psy1702 27 VLFKTA-GGKVIEKYISSFSEL-----------GS---EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~-Gv~~~~~~V~~l~~~-----------~g---~ad~VV~AaG~~s 62 (200)
+.+++. |+++++..|+.+... .+ .|+.||+|+|.|.
T Consensus 104 e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 104 NALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 556666 788888777665321 12 6899999999996
No 84
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=43.09 E-value=30 Score=30.39 Aligned_cols=37 Identities=5% Similarity=-0.060 Sum_probs=25.9
Q ss_pred HHHHHcCcEEEEE-eccccccc------------cC-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL------------GS-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~------------~g-----~ad~VV~AaG~~s~ 63 (200)
+.+++.|++++.. +|++|... .+ .++.||+|+|.++.
T Consensus 139 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 139 RSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred HHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 7788889999873 56554321 01 68999999997653
No 85
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=42.92 E-value=24 Score=30.02 Aligned_cols=56 Identities=5% Similarity=0.050 Sum_probs=34.6
Q ss_pred HHHHHc-CcEEEE-Eeccccccc---------cC---CCCEEEEcCCCCccc--ccC---CCCceeecceEEEEe
Q psy1702 27 VLFKTA-GGKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGART--LCN---DMHVIPVRGQTIRIK 82 (200)
Q Consensus 27 ~~~~~~-Gv~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s~~--L~~---~~pl~p~rGq~~~~~ 82 (200)
+++++. |++++. .+|++++.. .+ .+|.||.|.|.+|.- .+. ..+.++..++...++
T Consensus 120 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~ 194 (391)
T PRK08020 120 QALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVK 194 (391)
T ss_pred HHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEE
Confidence 556666 999886 467665421 12 799999999999952 221 223344555555544
No 86
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=42.44 E-value=41 Score=29.28 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=35.4
Q ss_pred HHHHHcCcEEEE-Eeccccccc-----cC---CCCEEEEcCCCCcccccCCCCcee-ecceEE
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL-----GS---EYNTIFNCTGLGARTLCNDMHVIP-VRGQTI 79 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~-----~g---~ad~VV~AaG~~s~~L~~~~pl~p-~rGq~~ 79 (200)
+.++++|++++. .+|+.+... .| .+|.||.|+|.-...++..+++.- .+|.+.
T Consensus 236 ~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~ 298 (424)
T PTZ00318 236 RRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRIS 298 (424)
T ss_pred HHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEE
Confidence 778899999996 466665432 23 799999999987766654433321 246554
No 87
>PRK08163 salicylate hydroxylase; Provisional
Probab=41.75 E-value=30 Score=29.44 Aligned_cols=38 Identities=5% Similarity=0.068 Sum_probs=27.0
Q ss_pred HHHHHcC-cEEEEE-eccccccc---------cC---CCCEEEEcCCCCccc
Q psy1702 27 VLFKTAG-GKVIEK-YISSFSEL---------GS---EYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~G-v~~~~~-~V~~l~~~---------~g---~ad~VV~AaG~~s~~ 64 (200)
+++.+.| ++++.. +|++++.. .+ .+|.||.|.|.+|..
T Consensus 117 ~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 117 EAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHH
Confidence 6666664 888873 67666432 12 799999999999864
No 88
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=37.16 E-value=44 Score=29.84 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=31.7
Q ss_pred HHHHHcCcEEEE-Eeccccccc----------cC---CCCEEEEcCCCCccccc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL----------GS---EYNTIFNCTGLGARTLC 66 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~----------~g---~ad~VV~AaG~~s~~L~ 66 (200)
+.++++|++|+. .+|.+++.. .| .+|+||+|-|..++..+
T Consensus 181 ~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~ 234 (486)
T COG2509 181 EYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWF 234 (486)
T ss_pred HHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHH
Confidence 889999999998 478776532 12 89999999999888653
No 89
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=36.29 E-value=38 Score=29.09 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=25.0
Q ss_pred HHHHHcCcEEEE-Eeccccccc-------------cC-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL-------------GS-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~-------------~g-----~ad~VV~AaG~~s~ 63 (200)
+.++++|++|+. ..+++|... .+ .|+.||+|+|-++.
T Consensus 149 ~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 149 KAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 889999999998 567766432 11 68899999999886
No 90
>PRK14694 putative mercuric reductase; Provisional
Probab=36.21 E-value=65 Score=28.42 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=35.5
Q ss_pred HHHHHcCcEEEEE-eccccccc---------cC--CCCEEEEcCCCCccccc---CCCCceeecceEE
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL---------GS--EYNTIFNCTGLGARTLC---NDMHVIPVRGQTI 79 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~---------~g--~ad~VV~AaG~~s~~L~---~~~pl~p~rGq~~ 79 (200)
+.+++.|++++.. .|.+++.. .+ .+|.||+|+|...+.-+ ..+.+...+|.+.
T Consensus 226 ~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~ 293 (468)
T PRK14694 226 AAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIR 293 (468)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEe
Confidence 7788899999884 66665421 12 79999999998876432 2344544567653
No 91
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=36.13 E-value=45 Score=29.85 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=26.6
Q ss_pred HHHHHcCcEEEE-Eeccccccc------------cC-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL------------GS-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~------------~g-----~ad~VV~AaG~~s~ 63 (200)
+.+++.|++++. .+|++|... .+ .++.||+|+|-++.
T Consensus 198 ~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 198 KNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 778889999987 356655321 11 68999999997664
No 92
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=35.97 E-value=46 Score=29.27 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=14.6
Q ss_pred cceeecHHHHHHHHHHHHHH
Q psy1702 174 AGVGVVVGRKKRLTDLLLTF 193 (200)
Q Consensus 174 ~G~~~a~~~A~~~a~li~~~ 193 (200)
+|-|.|.++|-.+++.+.+.
T Consensus 400 ~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 400 CGSGVALATALHAAEQIAEE 419 (422)
T ss_pred CCchhHHHHHHHHHHHHHHh
Confidence 67777888888888776643
No 93
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=35.80 E-value=43 Score=28.49 Aligned_cols=36 Identities=11% Similarity=0.275 Sum_probs=26.7
Q ss_pred HHHHHcCcEEEE-Eecccccccc------C---CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSELG------S---EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~~------g---~ad~VV~AaG~~s 62 (200)
..+++.|++++. .+|++++... + .+|++|+|+|...
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAEAQVVKSQGNQWQYDKLVLATGASA 111 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECCCCEEEECCeEEeCCEEEECCCCCC
Confidence 456778999986 4777765431 2 7999999999864
No 94
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=35.63 E-value=43 Score=30.57 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=27.1
Q ss_pred HHHHHcCcEEEE-Eeccccccc-----------cC-----CC-CEEEEcCCCCccc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL-----------GS-----EY-NTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~-----------~g-----~a-d~VV~AaG~~s~~ 64 (200)
++++++|++++. ..|++|... .+ .+ +.||+|+|.++..
T Consensus 229 ~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 229 YSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred HHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence 778889999987 366665421 11 34 7899999998873
No 95
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=35.48 E-value=49 Score=29.01 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=25.7
Q ss_pred HHHHHcCcEEEEEeccccccc------cC---CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIEKYISSFSEL------GS---EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~------~g---~ad~VV~AaG~~s 62 (200)
+.+++.|++++..++..+... .+ .+|+||+|+|...
T Consensus 98 ~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 98 RLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred HHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcC
Confidence 667788999998765444221 12 7999999999653
No 96
>PRK07190 hypothetical protein; Provisional
Probab=35.45 E-value=42 Score=29.95 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=28.2
Q ss_pred HHHHHcCcEEEE-Eeccccccc---------cC---CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s 62 (200)
+++++.|++++. .+|++++.. .+ .|+.||.|.|..|
T Consensus 117 ~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 117 DKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 677888999988 478777532 12 7999999999987
No 97
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=35.33 E-value=41 Score=29.82 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=26.8
Q ss_pred HHHHHcCcEEEEE-eccccccc----------cC---CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL----------GS---EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~----------~g---~ad~VV~AaG~~s 62 (200)
+.++++|++++.. +|++|... .+ .||.||+|+++..
T Consensus 227 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 227 KLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence 7788899999984 77776421 12 6999999999743
No 98
>PRK07121 hypothetical protein; Validated
Probab=34.49 E-value=48 Score=29.44 Aligned_cols=37 Identities=8% Similarity=-0.159 Sum_probs=26.8
Q ss_pred HHHHHcCcEEEE-Eeccccccc------------cC-----CC-CEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL------------GS-----EY-NTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~------------~g-----~a-d~VV~AaG~~s~ 63 (200)
+++++.|++++. ..|++|... .+ .+ +.||+|+|.++.
T Consensus 185 ~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 185 KRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 778889999987 466665321 01 57 999999998774
No 99
>KOG1199|consensus
Probab=33.76 E-value=32 Score=26.72 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=26.4
Q ss_pred HHHHHcCcEEEEE--eccccccc----------cCCCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIEK--YISSFSEL----------GSEYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~~--~V~~l~~~----------~g~ad~VV~AaG~~s 62 (200)
+.++++|.+++.. .|++-.+. .|.-|..|||||...
T Consensus 48 ~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~~vncagia~ 95 (260)
T KOG1199|consen 48 DVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDALVNCAGIAY 95 (260)
T ss_pred HHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceeeeeeccceee
Confidence 7788899887764 57765432 148899999999754
No 100
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=33.56 E-value=59 Score=28.93 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=27.2
Q ss_pred HHHHH-cCcEEEE-Eecccccccc-----------C-----CCCEEEEcCCCCccc
Q psy1702 27 VLFKT-AGGKVIE-KYISSFSELG-----------S-----EYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~-~Gv~~~~-~~V~~l~~~~-----------g-----~ad~VV~AaG~~s~~ 64 (200)
+++++ .|++++. ..|++|.... + .++.||+|+|.++..
T Consensus 136 ~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 136 KKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 66666 6999988 4666653210 1 689999999999874
No 101
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=33.35 E-value=44 Score=30.46 Aligned_cols=36 Identities=8% Similarity=-0.070 Sum_probs=25.4
Q ss_pred HHHHHcCcEEEEE-eccccccc------------cC----CCC-EEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL------------GS----EYN-TIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~------------~g----~ad-~VV~AaG~~s 62 (200)
+.++++|++++.. .|++|... .+ .++ .||+|+|.++
T Consensus 222 ~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 222 KSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 6678899999873 66665421 11 354 7999999988
No 102
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=33.08 E-value=45 Score=27.32 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=26.5
Q ss_pred HHHHHcCcEEEE-Eecccccccc------------C-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSELG------------S-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~~------------g-----~ad~VV~AaG~~s~ 63 (200)
+.+++.|+++.. .+|.+++... + +||.||-|-|.+|.
T Consensus 119 ~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 119 EEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred hhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 778888999988 5777654321 1 68999999999984
No 103
>PLN02546 glutathione reductase
Probab=32.86 E-value=54 Score=29.93 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=25.7
Q ss_pred HHHHHcCcEEEEEeccccccc----cC---CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIEKYISSFSEL----GS---EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~----~g---~ad~VV~AaG~~s 62 (200)
+.+++.|++++.++++.+... .+ .+|.||+|+|.-.
T Consensus 186 ~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~p 228 (558)
T PLN02546 186 NILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRP 228 (558)
T ss_pred HHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCCC
Confidence 667888999998655433321 12 7999999999653
No 104
>PRK12831 putative oxidoreductase; Provisional
Probab=32.60 E-value=73 Score=28.24 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=31.4
Q ss_pred ccCCceecChhhhhH-hHHHHHHcCcEEEEEe-ccc---cccc-cC-CCCEEEEcCCCCc
Q psy1702 10 VLPVYKRMSEEELAV-YTVLFKTAGGKVIEKY-ISS---FSEL-GS-EYNTIFNCTGLGA 62 (200)
Q Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~~~Gv~~~~~~-V~~---l~~~-~g-~ad~VV~AaG~~s 62 (200)
.+|+|+ ++++++-. ..+.++++|++++... |.. ++.. .. .+|.||+|+|++.
T Consensus 182 gip~~~-l~~~~~~~~~~~~~~~~gv~i~~~~~v~~~v~~~~~~~~~~~d~viiAtGa~~ 240 (464)
T PRK12831 182 GIPEFR-LPKETVVKKEIENIKKLGVKIETNVVVGKTVTIDELLEEEGFDAVFIGSGAGL 240 (464)
T ss_pred cCCCcc-CCccHHHHHHHHHHHHcCCEEEcCCEECCcCCHHHHHhccCCCEEEEeCCCCC
Confidence 345564 44443322 3478889999998743 321 1111 11 5999999999963
No 105
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=32.36 E-value=89 Score=28.04 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=32.9
Q ss_pred ceecChhhhhH-hHHHHHHcCcEEEE-Eeccccccc---------cC---CCCEEEEcCCCCccc
Q psy1702 14 YKRMSEEELAV-YTVLFKTAGGKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGART 64 (200)
Q Consensus 14 ~~~~~~~~~~~-~~~~~~~~Gv~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s~~ 64 (200)
+......+|.. +-+.+++.|++++. .+|.++... .+ .+|.||+|+|...+.
T Consensus 260 ~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 260 VPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 33333334433 23778888999987 467766432 12 699999999986543
No 106
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=32.18 E-value=67 Score=28.64 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=25.5
Q ss_pred HHHHHHcCcEEEEE-ecc-ccccc--cCCCCEEEEcCCCCc
Q psy1702 26 TVLFKTAGGKVIEK-YIS-SFSEL--GSEYNTIFNCTGLGA 62 (200)
Q Consensus 26 ~~~~~~~Gv~~~~~-~V~-~l~~~--~g~ad~VV~AaG~~s 62 (200)
.+.+++.|++++.. .|. .+... ...+|.||+|+|.+.
T Consensus 200 ~~~~~~~Gv~~~~~~~v~~~~~~~~~~~~~d~VilAtGa~~ 240 (485)
T TIGR01317 200 IDLLSAEGIDFVTNTEIGVDISADELKEQFDAVVLAGGATK 240 (485)
T ss_pred HHHHHhCCCEEECCCEeCCccCHHHHHhhCCEEEEccCCCC
Confidence 47788899999874 442 12111 127899999999984
No 107
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.97 E-value=57 Score=29.75 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=27.3
Q ss_pred HHHHHcCcEEEE-Eeccccccc-------------cC-----CCCEEEEcCCCCccc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL-------------GS-----EYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~-------------~g-----~ad~VV~AaG~~s~~ 64 (200)
+++++.|++++. ..|++|... .+ .|+.||+|+|-++..
T Consensus 143 ~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 143 NNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 667888999987 366655321 11 689999999998753
No 108
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=31.76 E-value=1e+02 Score=27.44 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=24.9
Q ss_pred HHHHHcCcE--EEE-Eecccccccc-----------C-----CCCEEEEcCCCCccc
Q psy1702 27 VLFKTAGGK--VIE-KYISSFSELG-----------S-----EYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~Gv~--~~~-~~V~~l~~~~-----------g-----~ad~VV~AaG~~s~~ 64 (200)
+.+++.|+. ++. .+|++++... + .+|.||+|+|..+..
T Consensus 119 ~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P 175 (461)
T PLN02172 119 DFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEP 175 (461)
T ss_pred HHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCC
Confidence 666677876 444 4677665321 1 379999999987653
No 109
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=31.40 E-value=63 Score=30.14 Aligned_cols=38 Identities=16% Similarity=-0.061 Sum_probs=27.4
Q ss_pred HHHHHcCcEEEE-Eeccccccc-------------cC-----CCCEEEEcCCCCccc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL-------------GS-----EYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~-------------~g-----~ad~VV~AaG~~s~~ 64 (200)
+++++.|++++. ..|++|... .+ .|+.||+|+|-++..
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 678889999987 466665321 12 589999999977653
No 110
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=29.87 E-value=63 Score=29.30 Aligned_cols=37 Identities=11% Similarity=0.008 Sum_probs=26.1
Q ss_pred HHHHHcCcEEEE-Eeccccccc-------------cC-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL-------------GS-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~-------------~g-----~ad~VV~AaG~~s~ 63 (200)
+++++.|++++. ..|++|... .+ .|+.||+|+|.++.
T Consensus 137 ~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 137 EQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred HHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 667788999887 355554321 12 68999999998875
No 111
>PRK12839 hypothetical protein; Provisional
Probab=29.74 E-value=62 Score=29.62 Aligned_cols=37 Identities=11% Similarity=-0.049 Sum_probs=26.7
Q ss_pred HHHHHcCcEEEE-Eecccccc--c-----------cC-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSE--L-----------GS-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~--~-----------~g-----~ad~VV~AaG~~s~ 63 (200)
+++++.|++++. ..|++|.. . .+ .++.||+|+|.|+.
T Consensus 222 ~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 222 RSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 778889999987 46666532 1 11 45899999999986
No 112
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.70 E-value=75 Score=29.55 Aligned_cols=37 Identities=8% Similarity=-0.007 Sum_probs=26.4
Q ss_pred HHHHHcCcEEEE-Eeccccccc-------------cC-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL-------------GS-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~-------------~g-----~ad~VV~AaG~~s~ 63 (200)
+++++.|++++. ..|++|... .+ .|+.||+|+|-++.
T Consensus 178 ~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 178 RQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 467788999987 456655321 12 68999999998775
No 113
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=29.27 E-value=67 Score=24.80 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=29.1
Q ss_pred CCCCCChHHHHHHHHHHHhhCCCC-----CCCCCcceeEeecCC
Q psy1702 118 VNRCVESTDTESILARTEELLPGV-----GACGGGQCWVGLRPH 156 (200)
Q Consensus 118 ~~~~~~~~~~~~ll~~~~~~~P~l-----~~~~v~~~w~G~Rp~ 156 (200)
|+.+....++.++.+..++.++.. +..+--+.|+|-||-
T Consensus 11 WEneL~l~dH~eLa~ffrktYgptg~fnakpFeg~RSWAGARPE 54 (196)
T PF02474_consen 11 WENELQLADHVELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPE 54 (196)
T ss_pred eccccchhhhHHHHHHHHHhcCCCCcccCccCCcccccccCCce
Confidence 566677788888888888777643 234567899999985
No 114
>PRK09897 hypothetical protein; Provisional
Probab=29.16 E-value=73 Score=29.01 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=25.7
Q ss_pred HHHHHcC--cEEEE-Eeccccccc---------c-C---CCCEEEEcCCCCccc
Q psy1702 27 VLFKTAG--GKVIE-KYISSFSEL---------G-S---EYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~G--v~~~~-~~V~~l~~~---------~-g---~ad~VV~AaG~~s~~ 64 (200)
+.+.+.| ++++. .+|++++.. . + .+|.||+|+|...+.
T Consensus 115 ~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p~ 168 (534)
T PRK09897 115 DQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPD 168 (534)
T ss_pred HHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCCC
Confidence 5556677 66665 478877532 1 1 689999999986543
No 115
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=29.07 E-value=64 Score=30.78 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=28.4
Q ss_pred HHHHHcCcEEEEE-eccccccc-------cC---CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL-------GS---EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~-------~g---~ad~VV~AaG~~s~ 63 (200)
+.+++.|++++.. +|++++.. .+ .+|++|+|+|....
T Consensus 62 ~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 62 DWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred HHHHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC
Confidence 7788899999984 78777542 12 79999999997643
No 116
>PRK10262 thioredoxin reductase; Provisional
Probab=28.83 E-value=86 Score=25.90 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=25.0
Q ss_pred HHHHHcCcEEEEEeccccccc---------cC--CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEKYISSFSEL---------GS--EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~---------~g--~ad~VV~AaG~~s~ 63 (200)
+.+...+.+++..+|.+++.. .+ .+|.||+|+|.+.+
T Consensus 71 ~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 71 EHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASAR 118 (321)
T ss_pred HHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCC
Confidence 556667777776555444321 12 78999999998754
No 117
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=28.80 E-value=71 Score=27.77 Aligned_cols=37 Identities=5% Similarity=0.116 Sum_probs=27.1
Q ss_pred HHHHHcCcEEEEEeccccccc-----------------cC---CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEKYISSFSEL-----------------GS---EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~-----------------~g---~ad~VV~AaG~~s~ 63 (200)
..+++.|+++++.+|++|+.. .+ .+|.+|+|+|.-..
T Consensus 70 ~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 70 PALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred HHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC
Confidence 445667899998888876421 12 78999999998654
No 118
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=28.77 E-value=94 Score=30.73 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=31.4
Q ss_pred ccCCceecChhhhhHhHHHHHHcCcEEEEEe--ccccccccC-CCCEEEEcCCCCcc
Q psy1702 10 VLPVYKRMSEEELAVYTVLFKTAGGKVIEKY--ISSFSELGS-EYNTIFNCTGLGAR 63 (200)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~--V~~l~~~~g-~ad~VV~AaG~~s~ 63 (200)
.+|+|+ ++++.+..--+.+.+.|++++... ...++.... .+|.||+|+|++..
T Consensus 579 ~IP~~r-lp~e~l~~~ie~l~~~GVe~~~g~~~d~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 579 IIPEFR-ISAESIQKDIELVKFHGVEFKYGCSPDLTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred cccccC-CCHHHHHHHHHHHHhcCcEEEEecccceEhhhhhcccccEEEECCCCCCC
Confidence 455554 233333222367788899998752 112222222 58999999999854
No 119
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=28.53 E-value=71 Score=27.40 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=27.8
Q ss_pred HHHHHcCcEEEEE-eccccccc-------cC---CCCEEEEcCCCCccc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL-------GS---EYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~-------~g---~ad~VV~AaG~~s~~ 64 (200)
..+++.|++++.. .|.+++.. .+ .+|++|+|+|...+.
T Consensus 66 ~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 66 NWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred HHHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCC
Confidence 5567889999874 67666432 12 799999999987643
No 120
>PRK07588 hypothetical protein; Provisional
Probab=28.50 E-value=62 Score=27.54 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=24.2
Q ss_pred HcCcEEEE-Eeccccccc---------cC---CCCEEEEcCCCCcc
Q psy1702 31 TAGGKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGAR 63 (200)
Q Consensus 31 ~~Gv~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s~ 63 (200)
..|++++. .+|++++.. .| ++|.||.|.|.+|.
T Consensus 114 ~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 114 DGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred hcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 34788887 477776532 12 78999999999985
No 121
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=27.74 E-value=73 Score=26.07 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=26.8
Q ss_pred CCCeEEEccceec-CCCCCCCChHHHHHHHHHHH
Q psy1702 103 FDSLVTLGGTQNF-GHVNRCVESTDTESILARTE 135 (200)
Q Consensus 103 ~~g~~~iG~t~~~-~~~~~~~~~~~~~~ll~~~~ 135 (200)
.|| +++|++... +.|...+|.+.++++++.++
T Consensus 221 ADG-~IVGS~~K~~G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 221 ADG-AIVGSYFKKDGKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred CCE-EEEeeeeeeCCEeCCcCCHHHHHHHHHHhh
Confidence 678 999999864 45778899999999998875
No 122
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=27.32 E-value=76 Score=27.57 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=33.5
Q ss_pred HHHHHcCcEEEE-Eeccccccc---------cC--CCCEEEEcCCCCcc-cccCCCCcee-ecceE
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL---------GS--EYNTIFNCTGLGAR-TLCNDMHVIP-VRGQT 78 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~---------~g--~ad~VV~AaG~~s~-~L~~~~pl~p-~rGq~ 78 (200)
+.+++.|++++. .+|.+++.. .+ .+|.||+|+|.... .++....+.- .+|.+
T Consensus 199 ~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i 264 (444)
T PRK09564 199 EELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAI 264 (444)
T ss_pred HHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCE
Confidence 778889999987 466665421 12 79999999998754 3444333432 24554
No 123
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=26.80 E-value=97 Score=26.04 Aligned_cols=40 Identities=20% Similarity=0.122 Sum_probs=29.4
Q ss_pred HHHHHcCcEEEEE-eccccccc-----cC---CCCEEEEcCCCCccccc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL-----GS---EYNTIFNCTGLGARTLC 66 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~-----~g---~ad~VV~AaG~~s~~L~ 66 (200)
+.++++|++++.. +|.+++.. .+ .+|.||+|.|......+
T Consensus 199 ~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l 247 (364)
T TIGR03169 199 RLLARRGIEVHEGAPVTRGPDGALILADGRTLPADAILWATGARAPPWL 247 (364)
T ss_pred HHHHHCCCEEEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChhhHH
Confidence 7788899999984 66666421 22 89999999997765443
No 124
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=26.80 E-value=91 Score=27.62 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=26.2
Q ss_pred HHHHHHcCcEEEEE-eccc-c--ccccCCCCEEEEcCCCCcc
Q psy1702 26 TVLFKTAGGKVIEK-YISS-F--SELGSEYNTIFNCTGLGAR 63 (200)
Q Consensus 26 ~~~~~~~Gv~~~~~-~V~~-l--~~~~g~ad~VV~AaG~~s~ 63 (200)
.+.+++.|++++.. .|.. + +.....+|.||+|+|.+..
T Consensus 198 ~~~~~~~Gv~~~~~~~v~~~~~~~~~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 198 REIFTAMGIEFHLNCEVGRDISLDDLLEDYDAVFLGVGTYRS 239 (467)
T ss_pred HHHHHHCCCEEECCCEeCCccCHHHHHhcCCEEEEEeCCCCC
Confidence 47788999999863 4422 1 1111279999999999864
No 125
>PRK06116 glutathione reductase; Validated
Probab=26.73 E-value=79 Score=27.63 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=25.0
Q ss_pred HHHHHcCcEEEEEeccccccc----cC---CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIEKYISSFSEL----GS---EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~----~g---~ad~VV~AaG~~s 62 (200)
+.+.+.|++++.+++..++.. .+ .+|.||+|+|...
T Consensus 101 ~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs~p 143 (450)
T PRK06116 101 NGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGGRP 143 (450)
T ss_pred HHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCC
Confidence 456678999998765443211 22 7999999999653
No 126
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=26.71 E-value=74 Score=27.73 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=28.4
Q ss_pred HHHHHcCcEEEE-Eeccccccc---------cC--CCCEEEEcCCCCccc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL---------GS--EYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~---------~g--~ad~VV~AaG~~s~~ 64 (200)
+.+++.|++++. .+|++++.. .+ .+|.||+|+|...+.
T Consensus 207 ~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 207 TILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCC
Confidence 678889999997 466666421 12 799999999988764
No 127
>PRK06175 L-aspartate oxidase; Provisional
Probab=26.56 E-value=97 Score=27.15 Aligned_cols=37 Identities=19% Similarity=0.073 Sum_probs=24.9
Q ss_pred HHHHH-cCcEEEE-Eeccccccc-----------cC-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKT-AGGKVIE-KYISSFSEL-----------GS-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~-~Gv~~~~-~~V~~l~~~-----------~g-----~ad~VV~AaG~~s~ 63 (200)
+++++ .|++++. ..|++|... .+ .|+.||+|+|-.+.
T Consensus 136 ~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 136 KKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred HHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 55654 5999988 366665321 11 68999999998654
No 128
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=26.47 E-value=82 Score=28.73 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=27.0
Q ss_pred HHHHHcCcEEEE-Eeccccccc-------------cC-----CCCEEEEcCCCCccc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL-------------GS-----EYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~-------------~g-----~ad~VV~AaG~~s~~ 64 (200)
+++++.|++++. ..+++|... .+ .|+.||+|+|-++..
T Consensus 127 ~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 127 QQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 778888999887 355554321 12 789999999987653
No 129
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=26.45 E-value=1.1e+02 Score=28.13 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=28.8
Q ss_pred HHHHHcCcEEEE-Eeccccccc---------------c--------CCCCEEEEcCCCCccc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL---------------G--------SEYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~---------------~--------g~ad~VV~AaG~~s~~ 64 (200)
+.++++||+|+. .+|++|... . ...|.||+|+|-.+..
T Consensus 234 ~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 234 KYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 999999999998 467765431 0 1789999999977653
No 130
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=26.02 E-value=77 Score=29.21 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=25.2
Q ss_pred HHHHHcC-cEEEEE-ecccccc-------------ccC-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAG-GKVIEK-YISSFSE-------------LGS-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~G-v~~~~~-~V~~l~~-------------~~g-----~ad~VV~AaG~~s~ 63 (200)
+++++.| ++++.. .|.+|.. ..+ .|+.||+|+|.++.
T Consensus 140 ~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 140 EAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred HHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 5676765 998873 5655421 011 68999999998875
No 131
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.78 E-value=1.2e+02 Score=20.32 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=34.6
Q ss_pred hHhHHHHHHcCcEEEEE-eccc-------cccccCCCCEEEEcCCCCccccc---------CCCCceeec
Q psy1702 23 AVYTVLFKTAGGKVIEK-YISS-------FSELGSEYNTIFNCTGLGARTLC---------NDMHVIPVR 75 (200)
Q Consensus 23 ~~~~~~~~~~Gv~~~~~-~V~~-------l~~~~g~ad~VV~AaG~~s~~L~---------~~~pl~p~r 75 (200)
..+.+.+++.|++++.+ +-.+ |...-..+|.||+.++.-+.... .+.|+...+
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 33557888999998876 1111 22222389999999999887653 156776655
No 132
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=25.72 E-value=1e+02 Score=27.25 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=25.7
Q ss_pred HHHHHcCcEEEEEeccc----ccc-------ccC-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEKYISS----FSE-------LGS-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~----l~~-------~~g-----~ad~VV~AaG~~s~ 63 (200)
+.+++.|++++.+++.. +.. ..| .+|.||+|+|.-..
T Consensus 100 ~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 100 ARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred HHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 66778899999875544 211 111 68999999998543
No 133
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=25.15 E-value=77 Score=27.87 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=25.5
Q ss_pred HHHHHcCcEEEEEecccc--cccc--CCCCEEEEcCCCCccc
Q psy1702 27 VLFKTAGGKVIEKYISSF--SELG--SEYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l--~~~~--g~ad~VV~AaG~~s~~ 64 (200)
+.+++.|++++...+.+. .... ..+|.||+|+|++.+.
T Consensus 191 ~~l~~~gv~~~~~~~v~~~v~~~~~~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 191 KTLKKLGVTFRMNFLVGKTATLEELFSQYDAVFIGTGAGLPK 232 (449)
T ss_pred HHHHhCCcEEEeCCccCCcCCHHHHHhhCCEEEEeCCCCCCC
Confidence 678889999988543221 1111 1689999999986443
No 134
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=24.92 E-value=77 Score=23.49 Aligned_cols=51 Identities=18% Similarity=0.142 Sum_probs=30.0
Q ss_pred CCceecChhhhhH-hH------------HHHHHcCcEEEE-E-e-----ccccccccCCCCEEEEcCCCCcc
Q psy1702 12 PVYKRMSEEELAV-YT------------VLFKTAGGKVIE-K-Y-----ISSFSELGSEYNTIFNCTGLGAR 63 (200)
Q Consensus 12 ~~~~~~~~~~~~~-~~------------~~~~~~Gv~~~~-~-~-----V~~l~~~~g~ad~VV~AaG~~s~ 63 (200)
||.-.|.++| |. ++ +.+.++|+++.. + . |..|.+....+|.+|+=.|+|+.
T Consensus 9 PNLn~LG~Re-p~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~th 79 (140)
T PF01220_consen 9 PNLNLLGKRE-PEIYGTTTLEDIEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTH 79 (140)
T ss_dssp TTGGGTTTSS-HHHHTSSHHHHHHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGH
T ss_pred CCcccccCCC-CCcCCcCCHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhcc
Confidence 5666777777 55 21 777788876643 2 1 33333333367777777777765
No 135
>PRK14727 putative mercuric reductase; Provisional
Probab=23.40 E-value=92 Score=27.60 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=28.0
Q ss_pred HHHHHcCcEEEE-Eeccccccc---------cC--CCCEEEEcCCCCccc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL---------GS--EYNTIFNCTGLGART 64 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~---------~g--~ad~VV~AaG~~s~~ 64 (200)
+++++.|++++. .+|.+++.. .+ .+|.||+|+|.+.+.
T Consensus 236 ~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 236 ACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANT 285 (479)
T ss_pred HHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCc
Confidence 677889999987 366655421 12 799999999998764
No 136
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=23.12 E-value=70 Score=27.93 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=23.9
Q ss_pred HHHHH-cCcEEEEEecccccccc----------C---CCCEEEEcCCC
Q psy1702 27 VLFKT-AGGKVIEKYISSFSELG----------S---EYNTIFNCTGL 60 (200)
Q Consensus 27 ~~~~~-~Gv~~~~~~V~~l~~~~----------g---~ad~VV~AaG~ 60 (200)
+.+++ .++++++.+|++|.... | .+|.||+|+|.
T Consensus 103 ~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 103 EKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 55555 47899888888875421 2 69999999999
No 137
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=22.88 E-value=78 Score=23.48 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=29.3
Q ss_pred CCceecChhhhhH-h------------HHHHHHcCcEEE--EEe-----ccccccccCCCCEEEEcCCCCcc
Q psy1702 12 PVYKRMSEEELAV-Y------------TVLFKTAGGKVI--EKY-----ISSFSELGSEYNTIFNCTGLGAR 63 (200)
Q Consensus 12 ~~~~~~~~~~~~~-~------------~~~~~~~Gv~~~--~~~-----V~~l~~~~g~ad~VV~AaG~~s~ 63 (200)
||.-.|+++| |. + -+.++++|+++. |.. |..|.+..+.+|.||+=.|+|+.
T Consensus 8 PNLNlLG~RE-p~iYG~~tl~di~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~TH 78 (141)
T TIGR01088 8 PNLNMLGLRE-PGVYGSQTLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTH 78 (141)
T ss_pred CCccccCCCC-CCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhh
Confidence 5666677777 44 1 166777786654 321 33343333356777777777774
No 138
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=22.79 E-value=1e+02 Score=27.15 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=24.8
Q ss_pred HHHHHcCcEEEEEeccccccc--------------cC-----CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIEKYISSFSEL--------------GS-----EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~--------------~g-----~ad~VV~AaG~~s 62 (200)
..+++.|++++++.++.+... .+ .+|+||+|+|...
T Consensus 100 ~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 100 ALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCC
Confidence 445677999999765433211 11 6999999999754
No 139
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=22.32 E-value=1.2e+02 Score=27.74 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=25.7
Q ss_pred HHHHHcCcEEEE-Eecccccccc-----------C-----CC-CEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSELG-----------S-----EY-NTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~~-----------g-----~a-d~VV~AaG~~s~ 63 (200)
++++++|++++. .+|++|.... + .+ +.||+|+|-++.
T Consensus 225 ~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 225 AGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred HHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 568889999987 4666654311 1 34 689999998775
No 140
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=22.17 E-value=1.3e+02 Score=28.03 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=25.2
Q ss_pred HHHHHcCcEEEEEeccccc----cccCCCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEKYISSFS----ELGSEYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~----~~~g~ad~VV~AaG~~s~ 63 (200)
+.+++.|++++...+.+.+ .....+|.||+|+|.+..
T Consensus 251 ~~l~~~Gv~i~~~~~v~~dv~~~~~~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 251 APLRAMGAEFRFNTVFGRDITLEELQKEFDAVLLAVGAQKA 291 (652)
T ss_pred HHHHHcCCEEEeCCcccCccCHHHHHhhcCEEEEEcCCCCC
Confidence 6778899999875432221 111269999999998753
No 141
>PRK09126 hypothetical protein; Provisional
Probab=21.97 E-value=84 Score=26.61 Aligned_cols=33 Identities=3% Similarity=0.017 Sum_probs=24.4
Q ss_pred HcCcEEEE-Eeccccccc---------cC---CCCEEEEcCCCCcc
Q psy1702 31 TAGGKVIE-KYISSFSEL---------GS---EYNTIFNCTGLGAR 63 (200)
Q Consensus 31 ~~Gv~~~~-~~V~~l~~~---------~g---~ad~VV~AaG~~s~ 63 (200)
..|++++. .+|++++.. .+ .+|.||.|.|..|.
T Consensus 123 ~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 123 QDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred CCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 46899987 467766432 12 79999999999875
No 142
>PRK08275 putative oxidoreductase; Provisional
Probab=21.88 E-value=1.2e+02 Score=27.58 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=26.4
Q ss_pred HHHHHcCcEEEE-Eeccccccc--------------cC-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSEL--------------GS-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~~--------------~g-----~ad~VV~AaG~~s~ 63 (200)
+++++.|++++. ..|++|... .+ .++.||+|+|-.+.
T Consensus 145 ~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 145 RQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 777888999887 356655321 12 68999999998764
No 143
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=21.87 E-value=1.1e+02 Score=28.18 Aligned_cols=37 Identities=8% Similarity=-0.165 Sum_probs=26.5
Q ss_pred HHHHHcCcEEEE-Eecccccc--c------------cC-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIE-KYISSFSE--L------------GS-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~-~~V~~l~~--~------------~g-----~ad~VV~AaG~~s~ 63 (200)
+++++.|++++. ..+++|.. . .+ .|+.||+|+|-++.
T Consensus 174 ~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 174 GQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 778889999987 35665432 1 12 68999999997764
No 144
>PLN02507 glutathione reductase
Probab=21.81 E-value=1.2e+02 Score=27.20 Aligned_cols=36 Identities=25% Similarity=0.146 Sum_probs=24.8
Q ss_pred HHHHHcCcEEEEEeccccccc-------cC-----CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIEKYISSFSEL-------GS-----EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~~-------~g-----~ad~VV~AaG~~s 62 (200)
..+.+.|++++.+++..+... .+ .+|+||+|+|...
T Consensus 132 ~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p 179 (499)
T PLN02507 132 RLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRA 179 (499)
T ss_pred HHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCC
Confidence 455668999999765443321 12 6799999999754
No 145
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=21.52 E-value=1.1e+02 Score=26.68 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=24.7
Q ss_pred HHHHHcCcEEEEEecccccc-----c--c-C---CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIEKYISSFSE-----L--G-S---EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~~-----~--~-g---~ad~VV~AaG~~s 62 (200)
..+++.|++++..++..++. . . + .+|+||+|+|...
T Consensus 100 ~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 100 GLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRP 146 (462)
T ss_pred HHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCC
Confidence 45677899999866443321 1 1 1 7999999999764
No 146
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.51 E-value=1.1e+02 Score=28.05 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=26.4
Q ss_pred HHHHHcCcEEEEE-eccccc--c----c-----------cC-----CCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEK-YISSFS--E----L-----------GS-----EYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~--~----~-----------~g-----~ad~VV~AaG~~s~ 63 (200)
+++++.|++++.. .|++|. . . .+ .|+.||+|+|-++.
T Consensus 148 ~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 148 QNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred HHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence 7788889999873 565542 1 0 11 68999999998774
No 147
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=21.29 E-value=48 Score=28.53 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=15.9
Q ss_pred cceeecHHHHHHHHHHHHHHhhhc
Q psy1702 174 AGVGVVVGRKKRLTDLLLTFNAEN 197 (200)
Q Consensus 174 ~G~~~a~~~A~~~a~li~~~~~~~ 197 (200)
.|-|.+..+|-.+++.|.+..+++
T Consensus 397 cGsGVaivta~~aa~qi~~~~~~~ 420 (421)
T COG3075 397 CGSGVAIVTALHAAEQIAERAGGQ 420 (421)
T ss_pred CCcchHHHHHHHHHHHHHHHhccc
Confidence 456666667777777777666554
No 148
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=21.14 E-value=1e+02 Score=28.02 Aligned_cols=37 Identities=8% Similarity=-0.034 Sum_probs=26.3
Q ss_pred HHHHHcCcEEEEE-ecccccccc-----------C-----CC-CEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSELG-----------S-----EY-NTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~~-----------g-----~a-d~VV~AaG~~s~ 63 (200)
+++++.|++++.. .|++|.... + .+ +.||+|+|-++.
T Consensus 216 ~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 216 EAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 7788899999873 666654311 1 46 479999998776
No 149
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=20.65 E-value=1.4e+02 Score=27.63 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=25.8
Q ss_pred HHHHHHcCcEEEEE-ecc-cc--ccccCCCCEEEEcCCCCcc
Q psy1702 26 TVLFKTAGGKVIEK-YIS-SF--SELGSEYNTIFNCTGLGAR 63 (200)
Q Consensus 26 ~~~~~~~Gv~~~~~-~V~-~l--~~~~g~ad~VV~AaG~~s~ 63 (200)
.+.+++.|++++.. .|. .+ +.....+|.||+|+|.+..
T Consensus 384 ~~~~~~~Gv~~~~~~~v~~~i~~~~~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 384 REIFSAMGIEFELNCEVGKDISLESLLEDYDAVFVGVGTYRS 425 (654)
T ss_pred HHHHHHCCeEEECCCEeCCcCCHHHHHhcCCEEEEeCCCCCC
Confidence 37788899999864 342 12 1111279999999999754
No 150
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.58 E-value=1.3e+02 Score=26.59 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=24.0
Q ss_pred HHHHHcCcEEEEEeccccc-------cccC-----CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIEKYISSFS-------ELGS-----EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~-------~~~g-----~ad~VV~AaG~~s 62 (200)
..+++.|++++++.+..++ ...+ .+|.||+|+|...
T Consensus 101 ~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 101 GMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred HHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCC
Confidence 4467789999986533221 1111 6999999999753
No 151
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=20.41 E-value=1.2e+02 Score=26.65 Aligned_cols=39 Identities=10% Similarity=0.281 Sum_probs=30.0
Q ss_pred HHHHHcC-cEEEEEecccccccc--------C--CCCEEEEcCCCCcccc
Q psy1702 27 VLFKTAG-GKVIEKYISSFSELG--------S--EYNTIFNCTGLGARTL 65 (200)
Q Consensus 27 ~~~~~~G-v~~~~~~V~~l~~~~--------g--~ad~VV~AaG~~s~~L 65 (200)
+-+++.+ ++|++++|++|+... + .+|..|+|.|.-....
T Consensus 65 ~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 65 ALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred HHhcccCceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCcC
Confidence 5556465 999999999987642 2 8999999999876544
No 152
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=20.30 E-value=1.2e+02 Score=29.29 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=27.4
Q ss_pred HHHHHcCcEEEEE-eccccccc-------cC---CCCEEEEcCCCCc
Q psy1702 27 VLFKTAGGKVIEK-YISSFSEL-------GS---EYNTIFNCTGLGA 62 (200)
Q Consensus 27 ~~~~~~Gv~~~~~-~V~~l~~~-------~g---~ad~VV~AaG~~s 62 (200)
..+++.|++++.. +|.+++.. .+ .+|.+|+|+|...
T Consensus 67 ~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 67 GFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCc
Confidence 6778899999985 57766432 12 7999999999764
No 153
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=20.15 E-value=80 Score=23.38 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=29.4
Q ss_pred CCceecChhhhhH-h------------HHHHHHcCcEEE--EEe-----ccccccccCCCCEEEEcCCCCcc
Q psy1702 12 PVYKRMSEEELAV-Y------------TVLFKTAGGKVI--EKY-----ISSFSELGSEYNTIFNCTGLGAR 63 (200)
Q Consensus 12 ~~~~~~~~~~~~~-~------------~~~~~~~Gv~~~--~~~-----V~~l~~~~g~ad~VV~AaG~~s~ 63 (200)
||.-.|+++| |. + -+.++++|+++. |.. |..|.+..+.+|.||+=.|+|+.
T Consensus 8 PNLN~LG~Re-p~iYG~~tl~~i~~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~TH 78 (140)
T cd00466 8 PNLNLLGKRE-PEIYGTTTLADIEALLRELAAELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTH 78 (140)
T ss_pred CCccccCCCC-CCcCCcCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHH
Confidence 5666677776 44 1 166677786554 321 33343333367877777777774
No 154
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=20.10 E-value=1e+02 Score=27.21 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=25.3
Q ss_pred HHHHHcCcEEEEEeccccc----cccCCCCEEEEcCCCCcc
Q psy1702 27 VLFKTAGGKVIEKYISSFS----ELGSEYNTIFNCTGLGAR 63 (200)
Q Consensus 27 ~~~~~~Gv~~~~~~V~~l~----~~~g~ad~VV~AaG~~s~ 63 (200)
+.+++.|++++........ .....+|.||+|+|.+..
T Consensus 201 ~~~~~~gv~~~~~~~v~~~~~~~~~~~~~d~vvlAtGa~~~ 241 (471)
T PRK12810 201 ELMEAEGIEFRTNVEVGKDITAEELLAEYDAVFLGTGAYKP 241 (471)
T ss_pred HHHHhCCcEEEeCCEECCcCCHHHHHhhCCEEEEecCCCCC
Confidence 7788899999875322211 111279999999999843
Done!