RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1702
(200 letters)
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 47.2 bits (112), Expect = 2e-06
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 17/119 (14%)
Query: 53 TIFNCTGLGARTLCN-----DMHVIPVRGQTIRIKAPHITNFYK--------NEYDTYII 99
+ G A L + + PVRGQ + + P ++ YI
Sbjct: 203 KVVLAAGAWAGELAATLGELPLPLRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIR 262
Query: 100 PNGFDSLVTLGGTQNFG---HVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRP 155
P G D + +GGT G + E +L LLPG+ G W GLRP
Sbjct: 263 PRG-DGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPGLADAGIEAAWAGLRP 320
>gnl|CDD|233831 TIGR02352, thiamin_ThiO, glycine oxidase ThiO. This family
consists of the homotetrameric, FAD-dependent glycine
oxidase ThiO, from species such as Bacillus subtilis
that use glycine in thiamine biosynthesis. In general,
members of this family will not be found in species such
as E. coli that instead use tyrosine and the ThiH
protein [Biosynthesis of cofactors, prosthetic groups,
and carriers, Thiamine].
Length = 337
Score = 43.9 bits (104), Expect = 2e-05
Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 36/124 (29%)
Query: 52 NTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYK------NEYDTYIIP----- 100
+ + G A L PVRGQ +R++AP + + YI+P
Sbjct: 183 DQVVLAAGAWAGELLPLPL-RPVRGQPLRLEAPAVPLLNRPLRAVVYGRRVYIVPRRDGR 241
Query: 101 ---------NGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWV 151
+GFD+ TLGG + +L +LP + + W
Sbjct: 242 LVVGATMEESGFDTTPTLGGIK---------------ELLRDAYTILPALKEARLLETWA 286
Query: 152 GLRP 155
GLRP
Sbjct: 287 GLRP 290
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 29.6 bits (67), Expect = 0.99
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 121 CVESTDTESILARTEELL 138
+ D ES+LAR E L
Sbjct: 428 DPDGDDVESVLARAEYNL 445
>gnl|CDD|234005 TIGR02774, rexB_recomb, ATP-dependent nuclease subunit B. DNA
repair is accomplished by several different systems in
prokaryotes. Recombinational repair of double-stranded
DNA breaks involves the RecBCD pathway in some lineages,
and AddAB (also called RecAB) in other. The AddA protein
is conserved between the firmicutes and the
alphaproteobacteria, while the partner protein is not.
The partner may be designated AddB, as in Bacillus and
in alphaproteobacteria, or RexB as in Streptococcus and
Lactococcus. Note, however, that RexB proteins lack an
N-terminal GxxGxGK[ST] ATP-binding motif found in
Bacillus subtilis and related species, and this
difference may be important; this model represents
specifically RexB proteins as found in Streptococcus and
Lactococcus [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1076
Score = 29.4 bits (66), Expect = 1.3
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 15 KRMSEEELAVYTVLFKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCND-MHVIP 73
M++++L ++VL + K+ ++ G E TI L +TL D + +
Sbjct: 688 MEMTKQDLTFWSVLVRYLRKKLDQQ--------GLEIPTI--TDSLSTKTLSKDVLQALY 737
Query: 74 VRGQTIRIKAPHITNFYKNEYDTYI 98
Q +++ A +T FY N+Y ++
Sbjct: 738 PADQPLKLSASALTTFYNNQYSYFL 762
>gnl|CDD|218199 pfam04665, Pox_A32, Poxvirus A32 protein. The A32 protein is
thought to be involved in viral DNA packaging.
Length = 241
Score = 28.9 bits (65), Expect = 1.3
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 15/51 (29%)
Query: 86 ITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEE 136
T Y N YD Y+ P+ H+ + + + E L++T+E
Sbjct: 47 FTPVYNNAYDGYVWPD---------------HIFKVTTNEELEYALSKTKE 82
>gnl|CDD|188234 TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype
I-B/HMARI. This domain is found in the C-terminal 2/3
of a family of CRISPR associated proteins of the Hmari
subtype. Except for the two sequences from halophilic
archaea this domain contains a pair of CXXC motifs
[Mobile and extrachromosomal element functions, Other].
Length = 393
Score = 28.2 bits (63), Expect = 2.7
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 65 LCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVT 108
+C D + + G+ I+ F N Y IIP V
Sbjct: 33 ICEDCYKDVLIGRKF-IEECLDRRFGGNTYKLPIIPGTIFPKVA 75
>gnl|CDD|148412 pfam06791, TMP_2, Prophage tail length tape measure protein. This
family represents a conserved region located towards the
N-terminal end of prophage tail length tape measure
protein (TMP). TMP is important for assembly of phage
tails and involved in tail length determination. Mutated
forms TMP cause tail fibres to be shortened.
Length = 210
Score = 28.1 bits (63), Expect = 2.9
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 20 EELAVYTVLFKTAGGKVIEKYISSFSELG 48
E +A A G+ +++ + F++L
Sbjct: 155 EAVAQAAAKMSEATGQSVDETVKDFAKLA 183
>gnl|CDD|224588 COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related
proteins [Cell division and chromosome partitioning].
Length = 858
Score = 27.1 bits (60), Expect = 7.0
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 8 KPVLPVYKRMSEEELAVYTVLFKTAGGKV-IEKYISSFSELGSEYNTIF 55
KPV + +S+EE+ K+ V ++ + + E +
Sbjct: 737 KPVRVLPAFVSDEEVEEVVEHLKSQVEPVYLDLATNPHLLISGETTVLR 785
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 27.2 bits (61), Expect = 7.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 79 IRIKAPHITNFYKNEYDTYIIPN 101
IRI+A IT+F + E I+PN
Sbjct: 957 IRIRATTITDFDRKE---VIVPN 976
>gnl|CDD|234957 PRK01526, PRK01526, Maf-like protein; Reviewed.
Length = 205
Score = 26.8 bits (59), Expect = 7.6
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 14 YKRMSEEELAVYTVL---FKTAGGKVIEKYISSF 44
+K++S+EE+ Y L AGG I Y +F
Sbjct: 137 FKKLSDEEINFYCSLDEGIDKAGGCKISGYAEAF 170
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.419
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,203,916
Number of extensions: 935733
Number of successful extensions: 740
Number of sequences better than 10.0: 1
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 14
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)