RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1702
(200 letters)
>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp.
[TaxId: 1409]}
Length = 88
Score = 57.7 bits (139), Expect = 3e-12
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 72 IPVRGQTIRIKAPHIT-NFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESI 130
+PV+G+ + + I YI+P + +G T G + + ES+
Sbjct: 2 LPVKGECLSVWNDDIPLTKTLYHDHCYIVPRK-SGRLVVGATMKPGDWSETPDLGGLESV 60
Query: 131 LARTEELLPGVGACGGGQCWVGLRP 155
+ + + +LP + + W GLRP
Sbjct: 61 MKKAKTMLPAIQNMKVDRFWAGLRP 85
>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 93
Score = 56.7 bits (136), Expect = 1e-11
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 71 VIPVRGQTIRIKAPHITNFYKNE-------YDTYIIPNGFDSLVTLGGTQNFGHVNRCVE 123
+ P RGQ I++ AP + NF YIIP VTLGGT G+ N
Sbjct: 1 LQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGL--QAVTLGGTFQVGNWNEINN 58
Query: 124 STDTESILARTEELLPGVGACGGGQCWVGLRPHR 157
D +I L P + + G RP R
Sbjct: 59 IQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVR 92
>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula
gracilis [TaxId: 5286]}
Length = 95
Score = 56.7 bits (136), Expect = 1e-11
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 73 PVRGQTIRIKAPHITNFY---KNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTES 129
P+RGQT+ +K+P YIIP V GGT G + V +
Sbjct: 3 PIRGQTVLVKSPCKRCTMDSSDPASPAYIIPRP-GGEVICGGTYGVGDWDLSVNPETVQR 61
Query: 130 ILARTEELLPGVGACGGG------QCWVGLRPHR 157
IL L P + + G + VGLRP R
Sbjct: 62 ILKHCLRLDPTISSDGTIEGIEVLRHNVGLRPAR 95
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 47.2 bits (111), Expect = 3e-07
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 29 FKTAGGKVIEKYISSFSELG-SEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHIT 87
G K + + SF E+ + I NCTG+ A L D + + + +R + +
Sbjct: 152 LTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLQVRLEREQLRFGSSNTE 211
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 42.7 bits (99), Expect = 8e-06
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 29 FKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTL--CNDMHVIPVRGQTIRIKAPHI 86
+ G + ++S + + + N TGLGA+++ +D R + RI P
Sbjct: 152 LQKLGATFERRTVTSLEQAFDGADLVVNATGLGAKSIAGIDDQARGGPRVEAERIVLPLD 211
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 305
Score = 26.6 bits (57), Expect = 2.0
Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 7/111 (6%)
Query: 50 EYNTIFNCTGLGARTLCNDM-HVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNG---FDS 105
+ + +C G + + +P G + ++ + FY E G +
Sbjct: 192 PADIVVSCAGFWGAKIGAMIGMAVPPDGGPLLGESKELDGFYVAEAVWVTHSAGVAKAMA 251
Query: 106 LVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPH 156
+ G + T E + + + L P
Sbjct: 252 ELLTTGRSETDLGEC---DITRFEDVQLTPEYVSETSQQNFVEIYDVLHPL 299
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus
laevis) [TaxId: 8355]}
Length = 284
Score = 26.4 bits (58), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 19 EEELAVYTVLFKTAGGKV 36
E E A+YT++F + K+
Sbjct: 231 EFEFALYTIVFLASQEKM 248
>g1qqp.1 b.121.4.1 (4:,2:) Aphthovirus (Foot-and-mouth disease
virus) coat proteins {FMDV (Foot-and-mouth disease
virus), strain bfs, 1860 [TaxId: 12110]}
Length = 289
Score = 25.7 bits (56), Expect = 3.8
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 86 ITNFYKNEYDTYIIPNGFDSLVTLGGTQNFG 116
I N+Y +Y + + ++ G +
Sbjct: 8 INNYYMQQYQNSMDTQLGNDAISGGSNEGST 38
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH
{Escherichia coli [TaxId: 562]}
Length = 220
Score = 25.2 bits (55), Expect = 5.4
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 110 GGTQNFGHVN-RCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYRVR 161
G TQN H++ C+ D L + GLR H Y R
Sbjct: 103 GRTQNHFHIHISCI-RPDVREQLDNNLANISS----RWLPLPGGLRGHEYLAR 150
>d2q8oa1 b.22.1.1 (A:49-173) Glucocorticoid-induced TNF-related
ligand, TNFSF18 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 125
Score = 24.2 bits (52), Expect = 7.3
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 70 HVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNF 115
VIPV + I+ AP + YK + N F ++ +GG
Sbjct: 46 QVIPVDKKYIKDNAPFVVQIYKKNDVLQTLMNDF-QILPIGGVYEL 90
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 24.9 bits (53), Expect = 7.3
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 12/131 (9%)
Query: 6 YLKP--VLPVYKRMSEEELAVYTVLFKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGAR 63
+L + ++ ++E+E Y K + + I+ + + A
Sbjct: 2 HLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAY 61
Query: 64 TLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVE 123
+ K + + II T++ V R +
Sbjct: 62 EALRAWEEARRIAFNSKNKIRKLREILERHRKDKII----------IFTRHNELVYRISK 111
Query: 124 STDTESILART 134
+I RT
Sbjct: 112 VFLIPAITHRT 122
>d2cwza1 d.38.1.7 (A:1-138) Hypothetical protein TTHA0967 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 24.1 bits (52), Expect = 8.6
Identities = 13/61 (21%), Positives = 15/61 (24%), Gaps = 4/61 (6%)
Query: 129 SILARTEELLPGVGACGGGQCWVGLRP----HRYRVRVECEQTPGGKVNAGVGVVVGRKK 184
L G G L R RV E+T G +V A V
Sbjct: 47 GRKIILPFLEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYNELGD 106
Query: 185 R 185
Sbjct: 107 L 107
>d2hhja1 c.60.1.1 (A:3-250) Phosphoglycerate mutase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 24.6 bits (52), Expect = 8.7
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 66 CNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVEST 125
+I G + R H+ + +P G L+ L +N V
Sbjct: 177 RGKTILISAHGNSSRALLKHLEGISDEDIINITLPTGVPILLEL--DENLRAVGPHQFLG 234
Query: 126 DTESILARTEE 136
D E+I A ++
Sbjct: 235 DQEAIQAAIKK 245
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.419
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 770,240
Number of extensions: 35898
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 13
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)