BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17021
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1
Length = 1217
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 86/123 (69%), Positives = 109/123 (88%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G+ +EF+HKT V++VP A+ PFQG +LVGVG+ LR+YDLGKKKLLRKCENKH+PNL+ I
Sbjct: 934 GDKLEFLHKTPVEDVPLAIAPFQGRVLVGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGI 993
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
++G R+ VSDVQES+F VRY+R ENQL+IFADDT PRWITT+C+LDY+T+ASADKFGN+
Sbjct: 994 HTIGQRVIVSDVQESLFWVRYRRNENQLIIFADDTYPRWITTACLLDYDTMASADKFGNI 1053
Query: 192 CIV 194
C+V
Sbjct: 1054 CVV 1056
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 43/48 (89%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENK 48
+EF+HKT V++VP A+ PFQG +LVGVG+ LR+YDLGKKKLLRKCENK
Sbjct: 937 LEFLHKTPVEDVPLAIAPFQGRVLVGVGKLLRIYDLGKKKLLRKCENK 984
>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1
Length = 1217
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 84/123 (68%), Positives = 104/123 (84%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENKH+ N I I
Sbjct: 934 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGI 993
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+++GHR+ VSDVQES VRYKR ENQL+IFADDT PRW+TT+ +LDY+TVA ADKFGN+
Sbjct: 994 QTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI 1053
Query: 192 CIV 194
C+V
Sbjct: 1054 CVV 1056
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK I + QT
Sbjct: 937 LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENK-HIANYISGIQT 995
Query: 61 HTH 63
H
Sbjct: 996 IGH 998
>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 84/123 (68%), Positives = 104/123 (84%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENKH+ N I I
Sbjct: 934 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGI 993
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+++GHR+ VSDVQES VRYKR ENQL+IFADDT PRW+TT+ +LDY+TVA ADKFGN+
Sbjct: 994 QTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI 1053
Query: 192 CIV 194
C+V
Sbjct: 1054 CVV 1056
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK I + QT
Sbjct: 937 LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENK-HIANYISGIQT 995
Query: 61 HTH 63
H
Sbjct: 996 IGH 998
>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4
Length = 1217
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 84/123 (68%), Positives = 104/123 (84%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENKH+ N I I
Sbjct: 934 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGI 993
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+++GHR+ VSDVQES VRYKR ENQL+IFADDT PRW+TT+ +LDY+TVA ADKFGN+
Sbjct: 994 QTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI 1053
Query: 192 CIV 194
C+V
Sbjct: 1054 CVV 1056
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK I + QT
Sbjct: 937 LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENK-HIANYISGIQT 995
Query: 61 HTH 63
H
Sbjct: 996 IGH 998
>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 84/123 (68%), Positives = 104/123 (84%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENKH+ N I I
Sbjct: 934 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGI 993
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+++GHR+ VSDVQES VRYKR ENQL+IFADDT PRW+TT+ +LDY+TVA ADKFGN+
Sbjct: 994 QTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI 1053
Query: 192 CIV 194
C+V
Sbjct: 1054 CVV 1056
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK I + QT
Sbjct: 937 LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENK-HIANYISGIQT 995
Query: 61 HTH 63
H
Sbjct: 996 IGH 998
>sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum
GN=sf3b3 PE=3 SV=1
Length = 1256
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 95/123 (77%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +E ++KT V+E YAM FQG L+ GVG+ +R+YD+GKKKLLRKCE K+LPN IV I
Sbjct: 973 GKKLELLYKTEVEEPVYAMAQFQGKLVCGVGKSIRIYDMGKKKLLRKCETKNLPNTIVNI 1032
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
S+G R+ V D+QES+ ++YKR EN L +FADD PRW+T+S +LDY+TVA ADKFGN+
Sbjct: 1033 HSLGDRLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWMTSSVMLDYDTVAGADKFGNI 1092
Query: 192 CIV 194
++
Sbjct: 1093 FVL 1095
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+E ++KT V+E YAM FQG L+ GVG+ +R+YD+GKKKLLRKCE K H
Sbjct: 976 LELLYKTEVEEPVYAMAQFQGKLVCGVGKSIRIYDMGKKKLLRKCETKNLPNTIVNIHSL 1035
Query: 61 HTHSGRSDRL-VGNAMEFVH 79
DRL VG+ E +H
Sbjct: 1036 ------GDRLVVGDIQESIH 1049
>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RSE1 PE=3 SV=1
Length = 1221
Score = 149 bits (377), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 90/123 (73%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +E +HKT VD++P + FQG LL G+G+ LR+YDLGKKKLLRKCEN+ P +V +
Sbjct: 937 GRELELLHKTEVDDIPLVLRAFQGRLLAGIGKALRIYDLGKKKLLRKCENRSFPTAVVSL 996
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
++ G RI V D+QES+ YK EN+L+ FADD P+++T +LDY+TVA+ADKFGN+
Sbjct: 997 DAQGSRIVVGDMQESIIFASYKPLENRLVTFADDVMPKFVTRCTMLDYDTVAAADKFGNI 1056
Query: 192 CIV 194
++
Sbjct: 1057 YVL 1059
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 39/48 (81%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENK 48
+E +HKT VD++P + FQG LL G+G+ LR+YDLGKKKLLRKCEN+
Sbjct: 940 LELLHKTEVDDIPLVLRAFQGRLLAGIGKALRIYDLGKKKLLRKCENR 987
>sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RSE1 PE=3 SV=1
Length = 1217
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT D++P + FQG LL G+G+ LRLY++GKK LLRKCEN P +V I
Sbjct: 933 GRILEFLHKTKTDDIPLCLAGFQGFLLAGIGKSLRLYEMGKKALLRKCENNGFPTAVVTI 992
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYEN-QLLIFADDTQPRWITTSCVLDYNTVASADKFGN 190
G RI V D+QES F Y+ QLLIFADD+QPRWIT +DY TVA DKFGN
Sbjct: 993 NVQGARIIVGDMQESTFYCVYRSIPTRQLLIFADDSQPRWITCVTSVDYETVACGDKFGN 1052
Query: 191 VCI 193
+ I
Sbjct: 1053 IFI 1055
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 4/57 (7%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKA 57
+EF+HKT D++P + FQG LL G+G+ LRLY++GKK LLRKCEN GF A
Sbjct: 936 LEFLHKTKTDDIPLCLAGFQGFLLAGIGKSLRLYEMGKKALLRKCEN----NGFPTA 988
>sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1
Length = 1217
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT D++P + FQG LL G+G+ LRLY++GKK LLRKCEN P +V I
Sbjct: 933 GRILEFLHKTKTDDIPLCLAGFQGFLLAGIGKSLRLYEMGKKALLRKCENNGFPTAVVTI 992
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYEN-QLLIFADDTQPRWITTSCVLDYNTVASADKFGN 190
G RI V D+QES F Y+ QLLIFADD+QPRWIT +DY TVA DKFGN
Sbjct: 993 NVQGARIIVGDMQESTFYCVYRSIPTRQLLIFADDSQPRWITCVTSVDYETVACGDKFGN 1052
Query: 191 VCI 193
+ I
Sbjct: 1053 IFI 1055
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 4/57 (7%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKA 57
+EF+HKT D++P + FQG LL G+G+ LRLY++GKK LLRKCEN GF A
Sbjct: 936 LEFLHKTKTDDIPLCLAGFQGFLLAGIGKSLRLYEMGKKALLRKCEN----NGFPTA 988
>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rse-1 PE=3 SV=2
Length = 1209
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 107/183 (58%), Gaps = 20/183 (10%)
Query: 12 VPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQTHTHSGRSDRLV 71
VP+A + L+VG G+ + L + + +G+ ++ H
Sbjct: 886 VPFASQEGESFLVVGTGKDMVL------------DPRQFTEGYIHVYRFHED-------- 925
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+E P A+ PFQG LL GVG+ LR+YDLG K+LLRK + P LIV +
Sbjct: 926 GRDLEFIHKTRVEEPPLALIPFQGRLLAGVGKTLRIYDLGLKQLLRKAQADVTPTLIVSL 985
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+S G+RI V D+Q+ + V YK N+L+ FADDT RW T + ++DY +VA DKFGN+
Sbjct: 986 QSQGNRIIVGDLQQGITYVVYKAEGNRLIPFADDTLNRWTTCTTMVDYESVAGGDKFGNI 1045
Query: 192 CIV 194
IV
Sbjct: 1046 YIV 1048
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 38/49 (77%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKV 49
+EF+HKT V+E P A+ PFQG LL GVG+ LR+YDLG K+LLRK + V
Sbjct: 929 LEFIHKTRVEEPPLALIPFQGRLLAGVGKTLRIYDLGLKQLLRKAQADV 977
>sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2
Length = 1216
Score = 137 bits (344), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 85/123 (69%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+E P A+ PFQG L+ G+GR LR+YDLG ++LLRK + + P LIV +
Sbjct: 933 GRELEFIHKTKVEEPPTALLPFQGRLVAGIGRMLRIYDLGLRQLLRKAQAEVAPQLIVSL 992
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+ G RI V DVQ + V YK N+L+ FADDT RW T + ++DY++ A ADKFGN+
Sbjct: 993 NTQGSRIIVGDVQHGLIYVAYKSETNRLIPFADDTIARWTTCTTMVDYDSTAGADKFGNL 1052
Query: 192 CIV 194
I+
Sbjct: 1053 WIL 1055
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 39/49 (79%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKV 49
+EF+HKT V+E P A+ PFQG L+ G+GR LR+YDLG ++LLRK + +V
Sbjct: 936 LEFIHKTKVEEPPTALLPFQGRLVAGIGRMLRIYDLGLRQLLRKAQAEV 984
>sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1 PE=3
SV=2
Length = 1209
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 83/123 (67%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+E P A+ FQG LL GVG LR+YDLG K+LLRKC+ P IV +
Sbjct: 926 GKELEFIHKTKVEEPPLALLGFQGRLLAGVGSVLRIYDLGMKQLLRKCQAAVAPKAIVGL 985
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
++ G RI VSDV+ESV V YK +N L+ F DD+ RW T + ++DY T A DKFGN+
Sbjct: 986 QTQGSRIVVSDVRESVTYVVYKYQDNVLIPFVDDSIARWTTAATMVDYETTAGGDKFGNL 1045
Query: 192 CIV 194
+V
Sbjct: 1046 WLV 1048
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 38/54 (70%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGF 54
+EF+HKT V+E P A+ FQG LL GVG LR+YDLG K+LLRKC+ V K
Sbjct: 929 LEFIHKTKVEEPPLALLGFQGRLLAGVGSVLRIYDLGMKQLLRKCQAAVAPKAI 982
>sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3
SV=1
Length = 1225
Score = 134 bits (337), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 86/123 (69%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+E P A+ FQG LL G+G LR+YDLG K+LLRKC+ + + IV +
Sbjct: 926 GKELEFIHKTKVEEPPLALLGFQGRLLAGIGSTLRIYDLGMKQLLRKCQAQVVSKTIVGL 985
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
++ G RI VSDV+ESV V YK +N L+ F DD+ RW T++ ++DY TVA DKFGN+
Sbjct: 986 QTQGSRIVVSDVRESVTYVVYKYQDNILIPFVDDSVSRWTTSTTMVDYETVAGGDKFGNL 1045
Query: 192 CIV 194
+V
Sbjct: 1046 WLV 1048
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKV 49
+EF+HKT V+E P A+ FQG LL G+G LR+YDLG K+LLRKC+ +V
Sbjct: 929 LEFIHKTKVEEPPLALLGFQGRLLAGIGSTLRIYDLGMKQLLRKCQAQV 977
>sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor prp12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp12 PE=1 SV=1
Length = 1206
Score = 130 bits (327), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 81/123 (65%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +E + T +D +P A+ PFQG +L GVGR+LR+YDLG KK+LRK E +P I I
Sbjct: 924 GKKLELISHTEIDGIPMALTPFQGRMLAGVGRFLRIYDLGNKKMLRKGELSAVPLFITHI 983
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
RI V+D Q SV V YK +N LL FADDT RW TT+ ++DY+T+A DKFGN+
Sbjct: 984 TVQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGGDKFGNI 1043
Query: 192 CIV 194
++
Sbjct: 1044 WLL 1046
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCE 46
+E + T +D +P A+ PFQG +L GVGR+LR+YDLG KK+LRK E
Sbjct: 927 LELISHTEIDGIPMALTPFQGRMLAGVGRFLRIYDLGNKKMLRKGE 972
>sp|Q6BYK1|RSE1_DEBHA Pre-mRNA-splicing factor RSE1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RSE1 PE=3 SV=2
Length = 1256
Score = 115 bits (287), Expect = 3e-25, Method: Composition-based stats.
Identities = 59/136 (43%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 60 THTHSGRSDRLVGNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKC 119
T S ++ +EFVHKT +D P A+ PF G LLVG+ +LRLYDLG+++LLRK
Sbjct: 948 TINKSSNKNKSQNEILEFVHKTELDYQPTAIIPFNGRLLVGMSNFLRLYDLGQRQLLRKA 1007
Query: 120 EN--KHLPNLIVKIESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVL 177
+ ++L N+I G RI V D S V+Y ENQ + FADD R IT L
Sbjct: 1008 SSNIEYLKNIIRLTHQGGSRIVVGDSSMSTTFVKYDSTENQFIPFADDIMKRQITALVTL 1067
Query: 178 DYNTVASADKFGNVCI 193
DY+T+ DKFGN+ +
Sbjct: 1068 DYDTIIGGDKFGNIFV 1083
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 8/94 (8%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EFVHKT +D P A+ PF G LLVG+ +LRLYDLG+++LLRK + + + K
Sbjct: 963 LEFVHKTELDYQPTAIIPFNGRLLVGMSNFLRLYDLGQRQLLRKASSNIE---YLKNIIR 1019
Query: 61 HTHSGRSDRLVGN---AMEFVHKTSVDE--VPYA 89
TH G S +VG+ + FV S + +P+A
Sbjct: 1020 LTHQGGSRIVVGDSSMSTTFVKYDSTENQFIPFA 1053
>sp|Q5A7S5|RSE1_CANAL Pre-mRNA-splicing factor RSE1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=RSE1 PE=3 SV=1
Length = 1219
Score = 85.1 bits (209), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCEN-KHLPNLIVKIES 133
++ VHKT +D +P + FQ LLV G ++RLYD+G+K+LL+K I KI
Sbjct: 939 LQLVHKTELDHIPQVLENFQDKLLVASGNHIRLYDIGQKQLLKKSTTIIDFSTNINKIIP 998
Query: 134 MGHRIYVSDVQE-SVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVC 192
+RI + D + S+ ++ +NQ + FADD R IT+ LD +T+ DKFGN+
Sbjct: 999 QTNRIIICDSHKSSIVFAKFDESQNQFVPFADDVMKRQITSIMNLDIDTLIGGDKFGNIF 1058
Query: 193 I 193
+
Sbjct: 1059 V 1059
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRK 44
++ VHKT +D +P + FQ LLV G ++RLYD+G+K+LL+K
Sbjct: 939 LQLVHKTELDHIPQVLENFQDKLLVASGNHIRLYDIGQKQLLKK 982
>sp|Q753D4|RSE1_ASHGO Pre-mRNA-splicing factor RSE1 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RSE1 PE=3 SV=2
Length = 1288
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 78 VHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKIESM--- 134
+H T +AMCPF LLV + + LY LGKK+LL+K + +LP I KI ++
Sbjct: 959 LHDTVAGSTIHAMCPFHDKLLVPLANAVVLYGLGKKQLLKKSIS-YLPTSITKIVALDQW 1017
Query: 135 -GHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCI 193
G R+ V D+ ESV L+ + +NQ + ADD R +T +D TV D+FGN+ +
Sbjct: 1018 NGTRVAVGDIHESVTLLHFDERKNQFIPVADDVTKRHVTVVKFVDECTVIGGDRFGNIWL 1077
Query: 194 V 194
+
Sbjct: 1078 L 1078
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 4 VHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKC 45
+H T +AMCPF LLV + + LY LGKK+LL+K
Sbjct: 959 LHDTVAGSTIHAMCPFHDKLLVPLANAVVLYGLGKKQLLKKS 1000
>sp|Q04693|RSE1_YEAST Pre-mRNA-splicing factor RSE1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RSE1 PE=1 SV=1
Length = 1361
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKIESM 134
+E +H+T + +AM F+ LL +G + LY LGKK+LLR+ + P I KI SM
Sbjct: 1019 IELLHQTEIISPIHAMLKFKNFLLTAMGSTIVLYGLGKKQLLRRSVTQ-TPVSITKIVSM 1077
Query: 135 GH----RIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN 190
R+ V D+ ESV L + N + + DD+ R +T LD TV AD++GN
Sbjct: 1078 HQWNYERLAVGDIHESVTLFIWDPAGNVFIPYVDDSVKRHVTVLKFLDEATVIGADRYGN 1137
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRK--CENKVRIKGFRKAH 58
+E +H+T + +AM F+ LL +G + LY LGKK+LLR+ + V I H
Sbjct: 1019 IELLHQTEIISPIHAMLKFKNFLLTAMGSTIVLYGLGKKQLLRRSVTQTPVSITKIVSMH 1078
Query: 59 Q 59
Q
Sbjct: 1079 Q 1079
>sp|Q9XYZ5|DDB1_DROME DNA damage-binding protein 1 OS=Drosophila melanogaster GN=pic PE=1
SV=1
Length = 1140
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 73 NAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLR-KCENKHLPNLIVK- 130
N + V +T VD YA+ F G +L G+G ++RLY+ +K LR +C ++ N+I
Sbjct: 857 NKLTQVAETKVDGTCYALVEFNGKVLAGIGSFVRLYEWTNEKELRMEC---NIQNMIAAL 913
Query: 131 -IESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFG 189
+++ G I V D+ S+ L+++K+ E + A D +P+W+ +LD +T ++ G
Sbjct: 914 FLKAKGDFILVGDLMRSITLLQHKQMEGIFVEIARDCEPKWMRAVEILDDDTFLGSETNG 973
Query: 190 NVCI 193
N+ +
Sbjct: 974 NLFV 977
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 4 VHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLR 43
V +T VD YA+ F G +L G+G ++RLY+ +K LR
Sbjct: 862 VAETKVDGTCYALVEFNGKVLAGIGSFVRLYEWTNEKELR 901
>sp|Q6CAH5|RSE1_YARLI Pre-mRNA-splicing factor RSE1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=RSE1 PE=3 SV=1
Length = 1143
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 11/138 (7%)
Query: 60 THTHSGRSDRLVGNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKC 119
T SG +++ VH T V+ P A+C + G L+ G+G +RLY LG K++LRK
Sbjct: 852 TSGTSGYISIFSSSSLGHVHTTEVEAPPLALCAYNGLLVAGIGSQVRLYALGLKQVLRKA 911
Query: 120 ENKHLPNLIVKIESMGH-----RIYVSDVQESVFLVRYKRYENQLLIFAD--DTQPRWIT 172
+ + L ++ + H R+ V D+++SV + ++ +I+ D R +T
Sbjct: 912 QIE----LSKRVTCLAHFAGSNRVAVGDIRQSVTVCVVLEEDSGHVIYPLVCDKISRQVT 967
Query: 173 TSCVLDYNTVASADKFGN 190
+DY TVA D+FG
Sbjct: 968 CLFFVDYETVALGDRFGG 985
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 4 VHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCE 46
VH T V+ P A+C + G L+ G+G +RLY LG K++LRK +
Sbjct: 870 VHTTEVEAPPLALCAYNGLLVAGIGSQVRLYALGLKQVLRKAQ 912
>sp|Q6CXH8|RSE1_KLULA Pre-mRNA-splicing factor RSE1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=RSE1 PE=3 SV=1
Length = 1269
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 69 RLVGNAME--FVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPN 126
R+ N +E ++H+T V AM F L + + L+ LGKK+LLRK + +P
Sbjct: 945 RVKNNVLETQYIHETMVHSKVNAMVSFGDKLACCILGNVVLFGLGKKQLLRKSITE-MPP 1003
Query: 127 LIVKIESM----GHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTV 182
I ++ ++ G + V D++ESV + +Y N + ADD R +TT +D ++V
Sbjct: 1004 YITQVTALDQWDGTMLAVGDIRESVTIFKYDIDNNSFIGVADDIVKRHVTTVKFIDVSSV 1063
Query: 183 ASADKFGNVCIV 194
D+FGN ++
Sbjct: 1064 IGGDRFGNCWVL 1075
>sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norvegicus GN=Ddb1 PE=2 SV=1
Length = 1140
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VK 130
G ++ V + V Y+M F G LL + +RLY+ +K LR E H N++ +
Sbjct: 855 GGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNHYNNIMALY 913
Query: 131 IESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN 190
+++ G I V D+ SV L+ YK E A D P W++ +LD + A+ N
Sbjct: 914 LKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFN 973
Query: 191 VCI 193
+ +
Sbjct: 974 LFV 976
>sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1
Length = 1140
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCI 193
G I V D+ SV L+ YK E A D P W++ +LD + A+ N+ +
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
>sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2
Length = 1140
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCI 193
G I V D+ SV L+ YK E A D P W++ +LD + A+ N+ +
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCI 193
G I V D+ SV L+ YK E A D P W++ +LD + A+ N+ +
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
>sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1
SV=1
Length = 1140
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCI 193
G I V D+ SV L+ YK E A D P W++ +LD + A+ N+ +
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
>sp|Q6P6Z0|DDB1_XENLA DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1
Length = 1140
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRT-ECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCI 193
G I V D+ SV L+ YK E A D P W++ +LD + A+ N+ +
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
>sp|Q805F9|DDB1_CHICK DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 88 YAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIESMGHRIYVSDVQES 146
Y+M F G LL + +RLY+ +K LR E H N++ + +++ G I V D+ S
Sbjct: 871 YSMVEFNGKLLASINSTVRLYEWTAEKELR-TECNHYNNIMALYLKTKGDFILVGDLMRS 929
Query: 147 VFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCI 193
V L+ YK E A D P W++ +LD + A+ N+ +
Sbjct: 930 VLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
>sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1
Length = 1140
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYPMVEFNGKLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCI 193
G I V D+ SV L+ YK E A D P W++ +LD + A+ N+ +
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
>sp|Q6FLQ6|RSE1_CANGA Pre-mRNA-splicing factor RSE1 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RSE1 PE=3
SV=1
Length = 1296
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 67 SDRLVGNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPN 126
+D V ME +H+T D + + F+ L+V L ++GK KLL K + +
Sbjct: 937 TDGTVDLKMELIHETHFDNEVFCIKVFRDMLIVPQYNRLLFCEVGKTKLLNKMIGPAV-D 995
Query: 127 LIVKIESM----GHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTV 182
+ KI + RI + D + SV L+++ +++ + A+D R +T LD +T+
Sbjct: 996 YVEKITVLDCWADDRIAIGDFRNSVSLLQFSS-SHEVNVIANDICTRDVTAIKFLDRSTI 1054
Query: 183 ASADKFGNVCIV 194
DKFG+V ++
Sbjct: 1055 IGGDKFGSVWVL 1066
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1
SV=1
Length = 1088
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 88 YAMCPFQGALLVGVGRYLRLY-----DLGKKKLLRKCENKHLPNLIVKIESMGHRIYVSD 142
Y++ F G LL + + ++LY D G ++L +C H L + +++ G I V D
Sbjct: 826 YSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSEC-GHHGHILALYVQTRGDFIVVGD 884
Query: 143 VQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCIVSTYRE 199
+ +S+ L+ YK E + A D W++ +LD + A+ N+ V E
Sbjct: 885 LMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLLTVKKNSE 941
>sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2
SV=2
Length = 1088
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 88 YAMCPFQGALLVGVGRYLRLY-----DLGKKKLLRKCENKHLPNLIVKIESMGHRIYVSD 142
Y++ F G LL + + ++LY D G ++L +C H L + +++ G I V D
Sbjct: 826 YSLNAFNGKLLASINQKIQLYKWMLRDDGTRELQSEC-GHHGHILALYVQTRGDFIAVGD 884
Query: 143 VQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCIVSTYRE 199
+ +S+ L+ YK E + A D W+T +L+ + D N+ V E
Sbjct: 885 LMKSISLLIYKHEEGAIEERARDYNANWMTAVEILNDDIYLGTDNCFNIFTVKKNNE 941
>sp|Q21554|DDB1_CAEEL DNA damage-binding protein 1 OS=Caenorhabditis elegans GN=ddb-1
PE=1 SV=2
Length = 1134
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 53 GFRKAHQTHTHSGR-----SDRLVGNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRL 107
G +T T GR D + + + VH+ V P A+ G L+ + +RL
Sbjct: 826 GLIYPDETETKIGRIVVFEVDDVERSKLRRVHELVVRGSPLAIRILNGKLVAAINSSIRL 885
Query: 108 YDLGKKKLLR-KCEN-KHLPNLIVKIESMGHRIYVSDVQESVFLVRYKRYENQLLIFADD 165
++ K LR +C + H+ L +K+ M + V+DV SV L+ Y+ E A D
Sbjct: 886 FEWTTDKELRLECSSFNHVIALDLKV--MNEEVAVADVMRSVSLLSYRMLEGNFEEVAKD 943
Query: 166 TQPRWITT 173
+W+ T
Sbjct: 944 WNSQWMVT 951
>sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1
SV=1
Length = 1090
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 88 YAMCPFQGALLVGVGRYLRLY------DLGKKKLLRKCENKHLPNLIVKIESMGHRIYVS 141
Y++ F G LL + + ++LY D G ++L +C H L + +++ G I V
Sbjct: 827 YSLNAFNGKLLAAINQKIQLYKWASREDGGSRELQTEC-GHHGHILALYVQTRGDFIVVG 885
Query: 142 DVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCIVSTYRE 199
D+ +S+ L+ +K E + A D W++ +LD + A+ N+ V E
Sbjct: 886 DLMKSISLLIFKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSE 943
>sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3
SV=1
Length = 1095
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 88 YAMCPFQGALLVGVGRYLRLY------DLGKKKLLRKCENKHLPNLIVKIESMGHRIYVS 141
Y++ F G LL + + ++LY D G ++L +C H L + +++ G I V
Sbjct: 832 YSLNAFNGKLLAAINQKIQLYKWASREDGGSRELQTEC-GHHGHILALYVQTRGDFIVVG 890
Query: 142 DVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCIVSTYRE 199
D+ +S+ L+ +K E + A D W++ +LD + A+ N+ V E
Sbjct: 891 DLMKSISLLIFKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSE 948
>sp|Q6CIH3|ERB1_KLULA Ribosome biogenesis protein ERB1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=ERB1 PE=3 SV=1
Length = 791
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 18 PFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQTHTHSGRSDRLVGNAME- 76
PF+ LLV RY+R+YDL ++ L++K + G R H R D L+ ++ +
Sbjct: 633 PFKPQLLVCSQRYVRIYDLSQQVLIKKL-----LPGARWLSTIDIHP-RGDNLIASSFDK 686
Query: 77 --FVHKTSVDEVPY 88
H + PY
Sbjct: 687 RVLWHDLDLASTPY 700
>sp|Q75DC5|ERB1_ASHGO Ribosome biogenesis protein ERB1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERB1
PE=3 SV=2
Length = 827
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 18 PFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQTHTHSGRSDRLVGNAME- 76
PF+ L V RY+R+YDL ++ L++K + G R H R D L+ ++ +
Sbjct: 669 PFKPQLFVCSQRYIRIYDLSQQVLVKKL-----LPGARWLSTIDIHP-RGDNLIASSFDK 722
Query: 77 --FVHKTSVDEVPYAMCPFQGALLVGVGRYLRL 107
H + PY + + VG + +L
Sbjct: 723 RVLWHDLDLAATPYKTLRYHEKAVRSVGFHKKL 755
>sp|Q6BRG6|ERB1_DEBHA Ribosome biogenesis protein ERB1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=ERB1 PE=3 SV=2
Length = 811
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 18 PFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQTHTHSGRSDRLVGNAME- 76
PF+ L V RY+R+YDL ++ L++K + G R H R D L+ ++ +
Sbjct: 652 PFKPQLFVASQRYIRIYDLAQQVLVKKL-----MPGARWLSNIDIHP-RGDNLLASSYDK 705
Query: 77 --FVHKTSVDEVPY 88
H + PY
Sbjct: 706 RVLWHDLDLSSTPY 719
>sp|P0CS34|ERB1_CRYNJ Ribosome biogenesis protein ERB1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=ERB1 PE=3 SV=1
Length = 830
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 15 AMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQTHTHSGRSDRLVGN 73
A P + RY+RLYDL +KL+R ++ G + HSG + ++G+
Sbjct: 669 AFHPSKPHFFAATQRYIRLYDLAAQKLIRTLQS-----GVKWISSMDVHSGGDNLIIGS 722
>sp|P0CS35|ERB1_CRYNB Ribosome biogenesis protein ERB1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=ERB1 PE=3 SV=1
Length = 830
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 15 AMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQTHTHSGRSDRLVGN 73
A P + RY+RLYDL +KL+R ++ G + HSG + ++G+
Sbjct: 669 AFHPSKPHFFAATQRYIRLYDLAAQKLIRTLQS-----GVKWISSMDVHSGGDNLIIGS 722
>sp|Q30T46|MURA_SULDN UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Sulfurimonas
denitrificans (strain ATCC 33889 / DSM 1251) GN=murA
PE=3 SV=1
Length = 422
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 87 PYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCEN-KHLPNLIVKIESMGHRIYVSD--- 142
P+++ P + + G YL + K +L K N KHL ++ K+E MG + ++D
Sbjct: 230 PFSVIPDR----IEAGTYLCAGAITKSELTLKGANAKHLGAVLSKLEEMGSKFTITDDSI 285
Query: 143 -VQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN 190
+ S + K + F D Q +++ + D ++ F N
Sbjct: 286 TIHPSKIIKHVKIVTQEYPAFPTDMQAQFLALATQADGTSIIEERLFEN 334
>sp|Q8N393|ZN786_HUMAN Zinc finger protein 786 OS=Homo sapiens GN=ZNF786 PE=2 SV=2
Length = 782
Score = 30.8 bits (68), Expect = 6.2, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 44 KCENKVRIKGFRKAHQTHTHS 64
KC+ + R+KG KAHQ HTHS
Sbjct: 541 KCDKRFRLKGILKAHQ-HTHS 560
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,073,031
Number of Sequences: 539616
Number of extensions: 2858255
Number of successful extensions: 8016
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 7928
Number of HSP's gapped (non-prelim): 86
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)