Your job contains 1 sequence.
>psy17021
MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT
HTHSGRSDRLVGNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCE
NKHLPNLIVKIESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYN
TVASADKFGNVCIVSTYRE
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17021
(199 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040426-2901 - symbol:sf3b3 "splicing factor... 489 1.9e-45 1
UNIPROTKB|F1NZF7 - symbol:SF3B3 "Uncharacterized protein"... 469 1.5e-44 1
UNIPROTKB|F1S419 - symbol:LOC100512659 "Uncharacterized p... 468 1.9e-44 1
RGD|1311636 - symbol:Sf3b3 "splicing factor 3b, subunit 3... 468 1.5e-43 1
UNIPROTKB|E9PT66 - symbol:Sf3b3 "Protein Sf3b3" species:1... 468 1.6e-43 1
UNIPROTKB|A0JN52 - symbol:SF3B3 "Splicing factor 3B subun... 468 3.3e-43 1
UNIPROTKB|E2RR33 - symbol:SF3B3 "Uncharacterized protein"... 468 3.3e-43 1
UNIPROTKB|Q15393 - symbol:SF3B3 "Splicing factor 3B subun... 468 3.3e-43 1
MGI|MGI:1289341 - symbol:Sf3b3 "splicing factor 3b, subun... 468 3.3e-43 1
FB|FBgn0035162 - symbol:CG13900 species:7227 "Drosophila ... 464 9.0e-43 1
UNIPROTKB|F1P529 - symbol:SF3B3 "Uncharacterized protein"... 460 2.4e-42 1
DICTYBASE|DDB_G0282569 - symbol:sf3b3 "splicing factor 3B... 400 6.5e-36 1
TAIR|locus:2100616 - symbol:SAP130a "spliceosome-associat... 389 9.1e-35 1
TAIR|locus:2100646 - symbol:SAP130b "spliceosome-associat... 389 9.1e-35 1
WB|WBGene00019323 - symbol:teg-4 species:6239 "Caenorhabd... 366 2.6e-32 1
ASPGD|ASPL0000031473 - symbol:AN5452 species:162425 "Emer... 327 3.8e-28 1
POMBASE|SPAPJ698.03c - symbol:prp12 "U2 snRNP-associated ... 312 1.5e-26 1
GENEDB_PFALCIPARUM|PFL1680w - symbol:PFL1680w "splicing f... 298 5.4e-25 1
UNIPROTKB|Q8I574 - symbol:PFL1680w "Splicing factor 3b, s... 298 5.4e-25 1
CGD|CAL0004426 - symbol:orf19.5391 species:5476 "Candida ... 206 1.1e-16 2
SGD|S000004513 - symbol:RSE1 "Protein involved in pre-mRN... 166 6.4e-11 1
FB|FBgn0260962 - symbol:pic "piccolo" species:7227 "Droso... 164 8.5e-11 1
UNIPROTKB|F5H0Y5 - symbol:DDB1 "DNA damage-binding protei... 132 1.1e-07 1
RGD|621889 - symbol:Ddb1 "damage-specific DNA binding pro... 137 8.3e-07 1
UNIPROTKB|B4DG00 - symbol:DDB1 "cDNA FLJ52436, highly sim... 132 1.2e-06 1
UNIPROTKB|F1M680 - symbol:Ddb1 "DNA damage-binding protei... 132 1.9e-06 1
UNIPROTKB|Q6P6Z0 - symbol:ddb1 "DNA damage-binding protei... 132 3.5e-06 2
UNIPROTKB|J9NVR7 - symbol:DDB1 "Uncharacterized protein" ... 132 4.1e-06 1
UNIPROTKB|F5GY55 - symbol:DDB1 "Uncharacterized protein" ... 132 4.2e-06 1
UNIPROTKB|A1A4K3 - symbol:DDB1 "DNA damage-binding protei... 132 4.4e-06 1
UNIPROTKB|E2R9E3 - symbol:DDB1 "Uncharacterized protein" ... 132 4.4e-06 1
UNIPROTKB|Q16531 - symbol:DDB1 "DNA damage-binding protei... 132 4.4e-06 1
UNIPROTKB|F1RIE2 - symbol:DDB1 "Uncharacterized protein" ... 132 4.4e-06 1
UNIPROTKB|P33194 - symbol:DDB1 "DNA damage-binding protei... 132 4.4e-06 1
MGI|MGI:1202384 - symbol:Ddb1 "damage specific DNA bindin... 132 4.4e-06 1
ZFIN|ZDB-GENE-040426-1272 - symbol:ddb1 "damage specific ... 132 4.4e-06 1
UNIPROTKB|Q5R649 - symbol:DDB1 "DNA damage-binding protei... 130 7.9e-06 1
UNIPROTKB|F1NVV3 - symbol:DDB1 "DNA damage-binding protei... 129 1.1e-05 1
UNIPROTKB|F1P4I8 - symbol:DDB1 "DNA damage-binding protei... 129 1.1e-05 1
UNIPROTKB|F1NVV2 - symbol:DDB1 "DNA damage-binding protei... 129 1.1e-05 1
UNIPROTKB|Q805F9 - symbol:DDB1 "DNA damage-binding protei... 129 1.1e-05 1
>ZFIN|ZDB-GENE-040426-2901 [details] [associations]
symbol:sf3b3 "splicing factor 3b, subunit 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 ZFIN:ZDB-GENE-040426-2901 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450
HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ EMBL:BX784024 EMBL:BC047171
IPI:IPI00508652 RefSeq:NP_998668.1 RefSeq:XP_002667683.2
UniGene:Dr.76176 STRING:Q1LVE8 PRIDE:Q1LVE8
Ensembl:ENSDART00000008310 Ensembl:ENSDART00000122831
Ensembl:ENSDART00000129666 Ensembl:ENSDART00000147743
GeneID:100334114 GeneID:406824 KEGG:dre:100334114 KEGG:dre:406824
InParanoid:Q1LVE8 NextBio:20818331 Bgee:Q1LVE8 Uniprot:Q1LVE8
Length = 1217
Score = 489 (177.2 bits), Expect = 1.9e-45, P = 1.9e-45
Identities = 86/123 (69%), Positives = 109/123 (88%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G+ +EF+HKT V++VP A+ PFQG +LVGVG+ LR+YDLGKKKLLRKCENKH+PNL+ I
Sbjct: 934 GDKLEFLHKTPVEDVPLAIAPFQGRVLVGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGI 993
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
++G R+ VSDVQES+F VRY+R ENQL+IFADDT PRWITT+C+LDY+T+ASADKFGN+
Sbjct: 994 HTIGQRVIVSDVQESLFWVRYRRNENQLIIFADDTYPRWITTACLLDYDTMASADKFGNI 1053
Query: 192 CIV 194
C+V
Sbjct: 1054 CVV 1056
Score = 195 (73.7 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 35/48 (72%), Positives = 43/48 (89%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENK 48
+EF+HKT V++VP A+ PFQG +LVGVG+ LR+YDLGKKKLLRKCENK
Sbjct: 937 LEFLHKTPVEDVPLAIAPFQGRVLVGVGKLLRIYDLGKKKLLRKCENK 984
>UNIPROTKB|F1NZF7 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0005634 GO:GO:0003676 GeneTree:ENSGT00530000063396
EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00819465
Ensembl:ENSGALT00000040057 ArrayExpress:F1NZF7 Uniprot:F1NZF7
Length = 504
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 84/123 (68%), Positives = 104/123 (84%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENKH+ N I I
Sbjct: 221 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYICGI 280
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+++GHR+ VSDVQES VRYKR ENQL+IFADDT PRW+TT+ +LDY+TVA ADKFGN+
Sbjct: 281 QTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTATLLDYDTVAGADKFGNI 340
Query: 192 CIV 194
C+V
Sbjct: 341 CVV 343
Score = 196 (74.1 bits), Expect = 8.9e-15, P = 8.9e-15
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK I + QT
Sbjct: 224 LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENK-HIANYICGIQT 282
Query: 61 HTH 63
H
Sbjct: 283 IGH 285
>UNIPROTKB|F1S419 [details] [associations]
symbol:LOC100512659 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0005634 GO:GO:0003676
GeneTree:ENSGT00530000063396 EMBL:CU915803 EMBL:AEMK01191757
Ensembl:ENSSSCT00000003019 OMA:SHEVIYS Uniprot:F1S419
Length = 319
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 84/123 (68%), Positives = 104/123 (84%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENKH+ N I I
Sbjct: 112 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGI 171
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+++GHR+ VSDVQES VRYKR ENQL+IFADDT PRW+TT+ +LDY+TVA ADKFGN+
Sbjct: 172 QTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI 231
Query: 192 CIV 194
C+V
Sbjct: 232 CVV 234
Score = 199 (75.1 bits), Expect = 8.9e-16, P = 8.9e-16
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK I + QT
Sbjct: 115 LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENK-HIANYISGIQT 173
Query: 61 HTH 63
H
Sbjct: 174 IGH 176
>RGD|1311636 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR004871
Pfam:PF03178 RGD:1311636 GO:GO:0005634 GO:GO:0003676
IPI:IPI00563335 PRIDE:F1LSZ9 Ensembl:ENSRNOT00000044193
UCSC:RGD:1311636 ArrayExpress:F1LSZ9 Uniprot:F1LSZ9
Length = 902
Score = 468 (169.8 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 84/123 (68%), Positives = 104/123 (84%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENKH+ N I I
Sbjct: 619 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGI 678
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+++GHR+ VSDVQES VRYKR ENQL+IFADDT PRW+TT+ +LDY+TVA ADKFGN+
Sbjct: 679 QTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI 738
Query: 192 CIV 194
C+V
Sbjct: 739 CVV 741
Score = 199 (75.1 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK I + QT
Sbjct: 622 LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENK-HIANYISGIQT 680
Query: 61 HTH 63
H
Sbjct: 681 IGH 683
>UNIPROTKB|E9PT66 [details] [associations]
symbol:Sf3b3 "Protein Sf3b3" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
RGD:1311636 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 IPI:IPI00958853
Ensembl:ENSRNOT00000023854 ArrayExpress:E9PT66 Uniprot:E9PT66
Length = 920
Score = 468 (169.8 bits), Expect = 1.6e-43, P = 1.6e-43
Identities = 84/123 (68%), Positives = 104/123 (84%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENKH+ N I I
Sbjct: 637 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGI 696
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+++GHR+ VSDVQES VRYKR ENQL+IFADDT PRW+TT+ +LDY+TVA ADKFGN+
Sbjct: 697 QTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI 756
Query: 192 CIV 194
C+V
Sbjct: 757 CVV 759
Score = 199 (75.1 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK I + QT
Sbjct: 640 LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENK-HIANYISGIQT 698
Query: 61 HTH 63
H
Sbjct: 699 IGH 701
>UNIPROTKB|A0JN52 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 GO:GO:0071013 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:BC126518 IPI:IPI00690059
RefSeq:NP_001071319.1 UniGene:Bt.7895 ProteinModelPortal:A0JN52
STRING:A0JN52 PRIDE:A0JN52 Ensembl:ENSBTAT00000014050 GeneID:504962
KEGG:bta:504962 CTD:23450 HOVERGEN:HBG093942 InParanoid:A0JN52
OrthoDB:EOG4RV2QJ BioCyc:CATTLE:504962-MONOMER BindingDB:A0JN52
NextBio:20866909 ArrayExpress:A0JN52 Uniprot:A0JN52
Length = 1217
Score = 468 (169.8 bits), Expect = 3.3e-43, P = 3.3e-43
Identities = 84/123 (68%), Positives = 104/123 (84%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENKH+ N I I
Sbjct: 934 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGI 993
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+++GHR+ VSDVQES VRYKR ENQL+IFADDT PRW+TT+ +LDY+TVA ADKFGN+
Sbjct: 994 QTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI 1053
Query: 192 CIV 194
C+V
Sbjct: 1054 CVV 1056
Score = 199 (75.1 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK I + QT
Sbjct: 937 LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENK-HIANYISGIQT 995
Query: 61 HTH 63
H
Sbjct: 996 IGH 998
>UNIPROTKB|E2RR33 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830 OMA:FDTIPVA
CTD:23450 EMBL:AAEX03004077 RefSeq:XP_536791.2
Ensembl:ENSCAFT00000032086 GeneID:479659 KEGG:cfa:479659
Uniprot:E2RR33
Length = 1217
Score = 468 (169.8 bits), Expect = 3.3e-43, P = 3.3e-43
Identities = 84/123 (68%), Positives = 104/123 (84%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENKH+ N I I
Sbjct: 934 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGI 993
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+++GHR+ VSDVQES VRYKR ENQL+IFADDT PRW+TT+ +LDY+TVA ADKFGN+
Sbjct: 994 QTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI 1053
Query: 192 CIV 194
C+V
Sbjct: 1054 CVV 1056
Score = 199 (75.1 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK I + QT
Sbjct: 937 LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENK-HIANYISGIQT 995
Query: 61 HTH 63
H
Sbjct: 996 IGH 998
>UNIPROTKB|Q15393 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0006461 "protein
complex assembly" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005654 GO:GO:0006461
Reactome:REACT_1675 GO:GO:0003676 GO:GO:0000398 GO:GO:0071013
GO:GO:0030532 eggNOG:NOG247734 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942
OrthoDB:EOG4RV2QJ EMBL:AJ001443 EMBL:D87686 EMBL:D13642
EMBL:BC000463 EMBL:BC003146 EMBL:BC009780 EMBL:BC068974
EMBL:AL110251 IPI:IPI00179138 IPI:IPI00300371 IPI:IPI00828110
PIR:T14779 RefSeq:NP_036558.3 UniGene:Hs.514435
ProteinModelPortal:Q15393 DIP:DIP-28152N IntAct:Q15393
MINT:MINT-1402891 STRING:Q15393 PhosphoSite:Q15393 DMDM:116242787
PaxDb:Q15393 PeptideAtlas:Q15393 PRIDE:Q15393
Ensembl:ENST00000302516 GeneID:23450 KEGG:hsa:23450 UCSC:uc002ezf.3
GeneCards:GC16P070557 HGNC:HGNC:10770 HPA:HPA042986 MIM:605592
neXtProt:NX_Q15393 PharmGKB:PA35688 InParanoid:Q15393
PhylomeDB:Q15393 BindingDB:Q15393 ChEMBL:CHEMBL1250378
GenomeRNAi:23450 NextBio:45731 ArrayExpress:Q15393 Bgee:Q15393
CleanEx:HS_SAP130 CleanEx:HS_SF3B3 Genevestigator:Q15393
GermOnline:ENSG00000189091 Uniprot:Q15393
Length = 1217
Score = 468 (169.8 bits), Expect = 3.3e-43, P = 3.3e-43
Identities = 84/123 (68%), Positives = 104/123 (84%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENKH+ N I I
Sbjct: 934 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGI 993
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+++GHR+ VSDVQES VRYKR ENQL+IFADDT PRW+TT+ +LDY+TVA ADKFGN+
Sbjct: 994 QTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI 1053
Query: 192 CIV 194
C+V
Sbjct: 1054 CVV 1056
Score = 199 (75.1 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK I + QT
Sbjct: 937 LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENK-HIANYISGIQT 995
Query: 61 HTH 63
H
Sbjct: 996 IGH 998
>MGI|MGI:1289341 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR004871 Pfam:PF03178
MGI:MGI:1289341 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0071013 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
HSSP:Q16531 GO:GO:0005689 KO:K12830 HOGENOM:HOG000216677
OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ
EMBL:AK085705 EMBL:AK088268 EMBL:AK129035 EMBL:AK147914
EMBL:BC011412 EMBL:BC031197 EMBL:BC042580 IPI:IPI00122011
IPI:IPI00625759 RefSeq:NP_598714.1 UniGene:Mm.236123
ProteinModelPortal:Q921M3 IntAct:Q921M3 STRING:Q921M3
PhosphoSite:Q921M3 PaxDb:Q921M3 PRIDE:Q921M3
Ensembl:ENSMUST00000042012 GeneID:101943 KEGG:mmu:101943
UCSC:uc009nlc.1 InParanoid:Q921M3 NextBio:355190 Bgee:Q921M3
CleanEx:MM_SF3B3 Genevestigator:Q921M3 Uniprot:Q921M3
Length = 1217
Score = 468 (169.8 bits), Expect = 3.3e-43, P = 3.3e-43
Identities = 84/123 (68%), Positives = 104/123 (84%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENKH+ N I I
Sbjct: 934 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGI 993
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
+++GHR+ VSDVQES VRYKR ENQL+IFADDT PRW+TT+ +LDY+TVA ADKFGN+
Sbjct: 994 QTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI 1053
Query: 192 CIV 194
C+V
Sbjct: 1054 CVV 1056
Score = 199 (75.1 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK I + QT
Sbjct: 937 LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENK-HIANYISGIQT 995
Query: 61 HTH 63
H
Sbjct: 996 IGH 998
>FB|FBgn0035162 [details] [associations]
symbol:CG13900 species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
evidence=ISS;IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0007052 GO:GO:0022008
Gene3D:2.130.10.10 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 GO:GO:0005686 eggNOG:NOG247734 EMBL:BT021338
ProteinModelPortal:Q5BI86 SMR:Q5BI86 STRING:Q5BI86 PaxDb:Q5BI86
PRIDE:Q5BI86 FlyBase:FBgn0035162 InParanoid:Q5BI86
OrthoDB:EOG4B5MM0 ArrayExpress:Q5BI86 Bgee:Q5BI86 Uniprot:Q5BI86
Length = 1227
Score = 464 (168.4 bits), Expect = 9.0e-43, P = 9.0e-43
Identities = 80/121 (66%), Positives = 103/121 (85%)
Query: 73 NAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKIE 132
+++EF+H+T +DE+P A+C FQG LL G GR LR+YD GKKK+LRKCENKH+P IV I+
Sbjct: 945 SSLEFMHRTDIDEIPGALCGFQGRLLAGCGRMLRIYDFGKKKMLRKCENKHIPYQIVNIQ 1004
Query: 133 SMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVC 192
+MGHR+YVSDVQESVF +RY+R ENQL+IFADDT PRW+T + +LDY+T+A ADKFGN+
Sbjct: 1005 AMGHRVYVSDVQESVFFIRYRRAENQLIIFADDTHPRWVTATTLLDYDTIAIADKFGNLS 1064
Query: 193 I 193
I
Sbjct: 1065 I 1065
Score = 188 (71.2 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 32/48 (66%), Positives = 40/48 (83%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENK 48
+EF+H+T +DE+P A+C FQG LL G GR LR+YD GKKK+LRKCENK
Sbjct: 947 LEFMHRTDIDEIPGALCGFQGRLLAGCGRMLRIYDFGKKKMLRKCENK 994
>UNIPROTKB|F1P529 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 OMA:FDTIPVA
EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00576925
Ensembl:ENSGALT00000003987 ArrayExpress:F1P529 Uniprot:F1P529
Length = 1228
Score = 460 (167.0 bits), Expect = 2.4e-42, P = 2.4e-42
Identities = 84/124 (67%), Positives = 104/124 (83%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENK-HLPNLIVK 130
G +EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK H+ N I
Sbjct: 944 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKKHIANYICG 1003
Query: 131 IESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN 190
I+++GHR+ VSDVQES VRYKR ENQL+IFADDT PRW+TT+ +LDY+TVA ADKFGN
Sbjct: 1004 IQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTATLLDYDTVAGADKFGN 1063
Query: 191 VCIV 194
+C+V
Sbjct: 1064 ICVV 1067
Score = 203 (76.5 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+EF+HKT V+EVP A+ PFQG +L+GVG+ LR+YDLGKKKLLRKCENK I + QT
Sbjct: 947 LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKKHIANYICGIQT 1006
Query: 61 HTH 63
H
Sbjct: 1007 IGH 1009
>DICTYBASE|DDB_G0282569 [details] [associations]
symbol:sf3b3 "splicing factor 3B subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA;ISS] [GO:0006461 "protein
complex assembly" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=IEA;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 dictyBase:DDB_G0282569 GO:GO:0006461 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0030532 eggNOG:NOG247734 KO:K12830 OMA:FDTIPVA
RefSeq:XP_640132.1 STRING:Q54SA7 EnsemblProtists:DDB0233171
GeneID:8623669 KEGG:ddi:DDB_G0282569 ProtClustDB:CLSZ2729005
Uniprot:Q54SA7
Length = 1256
Score = 400 (145.9 bits), Expect = 6.5e-36, P = 6.5e-36
Identities = 71/123 (57%), Positives = 95/123 (77%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +E ++KT V+E YAM FQG L+ GVG+ +R+YD+GKKKLLRKCE K+LPN IV I
Sbjct: 973 GKKLELLYKTEVEEPVYAMAQFQGKLVCGVGKSIRIYDMGKKKLLRKCETKNLPNTIVNI 1032
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
S+G R+ V D+QES+ ++YKR EN L +FADD PRW+T+S +LDY+TVA ADKFGN+
Sbjct: 1033 HSLGDRLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWMTSSVMLDYDTVAGADKFGNI 1092
Query: 192 CIV 194
++
Sbjct: 1093 FVL 1095
Score = 164 (62.8 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 37/80 (46%), Positives = 48/80 (60%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQT 60
+E ++KT V+E YAM FQG L+ GVG+ +R+YD+GKKKLLRKCE K H
Sbjct: 976 LELLYKTEVEEPVYAMAQFQGKLVCGVGKSIRIYDMGKKKLLRKCETKNLPNTIVNIHSL 1035
Query: 61 HTHSGRSDRLV-GNAMEFVH 79
DRLV G+ E +H
Sbjct: 1036 ------GDRLVVGDIQESIH 1049
>TAIR|locus:2100616 [details] [associations]
symbol:SAP130a "spliceosome-associated protein 130 a"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 389 (142.0 bits), Expect = 9.1e-35, P = 9.1e-35
Identities = 73/123 (59%), Positives = 91/123 (73%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G ++E +HKT V+ VP A+C FQG LL G+G LRLYDLGKK+LLRKCENK PN I+ I
Sbjct: 932 GKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISI 991
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
++ RIYV D+QES +Y+R ENQL IFADD PRW+T S +D++T+A ADKFGNV
Sbjct: 992 QTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNV 1051
Query: 192 CIV 194
V
Sbjct: 1052 YFV 1054
Score = 182 (69.1 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKV 49
+E +HKT V+ VP A+C FQG LL G+G LRLYDLGKK+LLRKCENK+
Sbjct: 935 LELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKL 983
>TAIR|locus:2100646 [details] [associations]
symbol:SAP130b "spliceosome-associated protein 130 b"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 389 (142.0 bits), Expect = 9.1e-35, P = 9.1e-35
Identities = 73/123 (59%), Positives = 91/123 (73%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G ++E +HKT V+ VP A+C FQG LL G+G LRLYDLGKK+LLRKCENK PN I+ I
Sbjct: 932 GKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISI 991
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
++ RIYV D+QES +Y+R ENQL IFADD PRW+T S +D++T+A ADKFGNV
Sbjct: 992 QTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNV 1051
Query: 192 CIV 194
V
Sbjct: 1052 YFV 1054
Score = 182 (69.1 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKV 49
+E +HKT V+ VP A+C FQG LL G+G LRLYDLGKK+LLRKCENK+
Sbjct: 935 LELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKL 983
>WB|WBGene00019323 [details] [associations]
symbol:teg-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0001703 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:FO081029 PIR:T32916
RefSeq:NP_491953.1 ProteinModelPortal:O44985 STRING:O44985
PaxDb:O44985 EnsemblMetazoa:K02F2.3 GeneID:172406
KEGG:cel:CELE_K02F2.3 UCSC:K02F2.3 CTD:172406 WormBase:K02F2.3
InParanoid:O44985 NextBio:875387 Uniprot:O44985
Length = 1220
Score = 366 (133.9 bits), Expect = 2.6e-32, P = 2.6e-32
Identities = 83/185 (44%), Positives = 113/185 (61%)
Query: 12 VPYAMCPFQGALLVGVG--RYLRLYDLGKKKLLRKCENKVRIKGFRKAHQTHTHSGRSDR 69
V ++ P + +LVG G L ++D+ N I+ R T S DR
Sbjct: 888 VQFSKHPNEAMVLVGCGVNEVLNVHDIDP--------NDTSIRPTRGCVYTFHLSANGDR 939
Query: 70 LVGNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIV 129
+F+H+T A+ F+G LVG GR+LR+YD+G+KKLL KCENK+ P IV
Sbjct: 940 F-----DFLHRTETPLPVGAIHDFRGMALVGFGRFLRMYDIGQKKLLAKCENKNFPVSIV 994
Query: 130 KIESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFG 189
I+S G RI VSD QESV +RY++ +NQL++FADDT PR++T CVLDY+TVA ADKFG
Sbjct: 995 NIQSTGQRIIVSDSQESVHFLRYRKGDNQLVVFADDTTPRYVTCVCVLDYHTVAVADKFG 1054
Query: 190 NVCIV 194
N+ +V
Sbjct: 1055 NLAVV 1059
Score = 132 (51.5 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 2 EFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENK 48
+F+H+T A+ F+G LVG GR+LR+YD+G+KKLL KCENK
Sbjct: 941 DFLHRTETPLPVGAIHDFRGMALVGFGRFLRMYDIGQKKLLAKCENK 987
>ASPGD|ASPL0000031473 [details] [associations]
symbol:AN5452 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380
Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0007049 EMBL:BN001305 EMBL:AACD01000094 eggNOG:NOG247734
KO:K12830 RefSeq:XP_663056.1 STRING:Q5B1X8 GeneID:2871744
KEGG:ani:AN5452.2 HOGENOM:HOG000216677 OMA:FDTIPVA
OrthoDB:EOG4FR40R Uniprot:Q5B1X8
Length = 1209
Score = 327 (120.2 bits), Expect = 3.8e-28, P = 3.8e-28
Identities = 64/123 (52%), Positives = 83/123 (67%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +EF+HKT V+E P A+ FQG LL GVG LR+YDLG K+LLRKC+ P IV +
Sbjct: 926 GKELEFIHKTKVEEPPLALLGFQGRLLAGVGSVLRIYDLGMKQLLRKCQAAVAPKAIVGL 985
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
++ G RI VSDV+ESV V YK +N L+ F DD+ RW T + ++DY T A DKFGN+
Sbjct: 986 QTQGSRIVVSDVRESVTYVVYKYQDNVLIPFVDDSIARWTTAATMVDYETTAGGDKFGNL 1045
Query: 192 CIV 194
+V
Sbjct: 1046 WLV 1048
Score = 160 (61.4 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 31/52 (59%), Positives = 38/52 (73%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKVRIK 52
+EF+HKT V+E P A+ FQG LL GVG LR+YDLG K+LLRKC+ V K
Sbjct: 929 LEFIHKTKVEEPPLALLGFQGRLLAGVGSVLRIYDLGMKQLLRKCQAAVAPK 980
>POMBASE|SPAPJ698.03c [details] [associations]
symbol:prp12 "U2 snRNP-associated protein Sap130
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000245
"spliceosomal complex assembly" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0030620 "U2 snRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 PomBase:SPAPJ698.03c EMBL:CU329670
GenomeReviews:CU329670_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0005681 GO:GO:0007049 GO:GO:0000245 GO:GO:0005686
GO:GO:0045292 eggNOG:NOG247734 GO:GO:0030620 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA OrthoDB:EOG4FR40R EMBL:AB034966
RefSeq:NP_594414.1 IntAct:Q9UTT2 STRING:Q9UTT2
EnsemblFungi:SPAPJ698.03c.1 GeneID:2543278 KEGG:spo:SPAPJ698.03c
NextBio:20804299 Uniprot:Q9UTT2
Length = 1206
Score = 312 (114.9 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 61/123 (49%), Positives = 81/123 (65%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKI 131
G +E + T +D +P A+ PFQG +L GVGR+LR+YDLG KK+LRK E +P I I
Sbjct: 924 GKKLELISHTEIDGIPMALTPFQGRMLAGVGRFLRIYDLGNKKMLRKGELSAVPLFITHI 983
Query: 132 ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNV 191
RI V+D Q SV V YK +N LL FADDT RW TT+ ++DY+T+A DKFGN+
Sbjct: 984 TVQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGGDKFGNI 1043
Query: 192 CIV 194
++
Sbjct: 1044 WLL 1046
Score = 149 (57.5 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCE 46
+E + T +D +P A+ PFQG +L GVGR+LR+YDLG KK+LRK E
Sbjct: 927 LELISHTEIDGIPMALTPFQGRMLAGVGRFLRIYDLGNKKMLRKGE 972
>GENEDB_PFALCIPARUM|PFL1680w [details] [associations]
symbol:PFL1680w "splicing factor 3b, subunit 3,
130kD, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 298 (110.0 bits), Expect = 5.4e-25, P = 5.4e-25
Identities = 55/125 (44%), Positives = 81/125 (64%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKIESM 134
+ +H T ++E PY C + G L+ +G LR+Y LGKKKLL+KCE K +P IV I+
Sbjct: 1050 LNLLHITPIEEQPYCFCSYNGKLIASIGNKLRIYALGKKKLLKKCEYKDIPEAIVSIKIS 1109
Query: 135 GHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCIV 194
G+RI+ D++ESV + Y +N L + +DD PRWIT S +LD++T+ +ADKF +V I+
Sbjct: 1110 GNRIFACDIRESVLIFFYDPNQNTLRLISDDIIPRWITCSEILDHHTIMAADKFDSVFIL 1169
Query: 195 STYRE 199
E
Sbjct: 1170 RVPEE 1174
Score = 136 (52.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENK 48
+ +H T ++E PY C + G L+ +G LR+Y LGKKKLL+KCE K
Sbjct: 1050 LNLLHITPIEEQPYCFCSYNGKLIASIGNKLRIYALGKKKLLKKCEYK 1097
>UNIPROTKB|Q8I574 [details] [associations]
symbol:PFL1680w "Splicing factor 3b, subunit 3, 130kD,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 298 (110.0 bits), Expect = 5.4e-25, P = 5.4e-25
Identities = 55/125 (44%), Positives = 81/125 (64%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKIESM 134
+ +H T ++E PY C + G L+ +G LR+Y LGKKKLL+KCE K +P IV I+
Sbjct: 1050 LNLLHITPIEEQPYCFCSYNGKLIASIGNKLRIYALGKKKLLKKCEYKDIPEAIVSIKIS 1109
Query: 135 GHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVCIV 194
G+RI+ D++ESV + Y +N L + +DD PRWIT S +LD++T+ +ADKF +V I+
Sbjct: 1110 GNRIFACDIRESVLIFFYDPNQNTLRLISDDIIPRWITCSEILDHHTIMAADKFDSVFIL 1169
Query: 195 STYRE 199
E
Sbjct: 1170 RVPEE 1174
Score = 136 (52.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENK 48
+ +H T ++E PY C + G L+ +G LR+Y LGKKKLL+KCE K
Sbjct: 1050 LNLLHITPIEEQPYCFCSYNGKLIASIGNKLRIYALGKKKLLKKCEYK 1097
>CGD|CAL0004426 [details] [associations]
symbol:orf19.5391 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0030620 "U2 snRNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 CGD:CAL0004426
GO:GO:0008380 Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0007049 eggNOG:NOG247734 EMBL:AACQ01000051
EMBL:AACQ01000050 RefSeq:XP_717672.1 RefSeq:XP_717766.1
STRING:Q5A7S5 GeneID:3640538 GeneID:3640666 KEGG:cal:CaO19.12846
KEGG:cal:CaO19.5391 KO:K12830 Uniprot:Q5A7S5
Length = 1219
Score = 206 (77.6 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 45/121 (37%), Positives = 69/121 (57%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENK-HLPNLIVKIES 133
++ VHKT +D +P + FQ LLV G ++RLYD+G+K+LL+K I KI
Sbjct: 939 LQLVHKTELDHIPQVLENFQDKLLVASGNHIRLYDIGQKQLLKKSTTIIDFSTNINKIIP 998
Query: 134 MGHRIYVSDVQES-VFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGNVC 192
+RI + D +S + ++ +NQ + FADD R IT+ LD +T+ DKFGN+
Sbjct: 999 QTNRIIICDSHKSSIVFAKFDESQNQFVPFADDVMKRQITSIMNLDIDTLIGGDKFGNIF 1058
Query: 193 I 193
+
Sbjct: 1059 V 1059
Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 1 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRK 44
++ VHKT +D +P + FQ LLV G ++RLYD+G+K+LL+K
Sbjct: 939 LQLVHKTELDHIPQVLENFQDKLLVASGNHIRLYDIGQKQLLKK 982
Score = 41 (19.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 25 VGVGRYLRLYDLGKKKLLRKCENKVRIKGFRKAHQTHTHSGRSDRLV 71
VG+ +++Y G K + NK F A T TH+ +++ V
Sbjct: 539 VGIASVVQIYSNGIKHVRTVNGNKKTTDWFPPAGITITHATTNNQQV 585
>SGD|S000004513 [details] [associations]
symbol:RSE1 "Protein involved in pre-mRNA splicing"
species:4932 "Saccharomyces cerevisiae" [GO:0005686 "U2 snRNP"
evidence=IDA;IPI] [GO:0000245 "spliceosomal complex assembly"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI;IMP;IPI] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030620 "U2 snRNA binding" evidence=IPI]
[GO:0071004 "U2-type prespliceosome" evidence=IDA]
InterPro:IPR004871 Pfam:PF03178 SGD:S000004513 EMBL:BK006946
GO:GO:0007049 EMBL:Z47816 GO:GO:0000245 GO:GO:0005686 GO:GO:0071004
GeneTree:ENSGT00530000063396 GO:GO:0030620 KO:K12830
OrthoDB:EOG4FR40R PIR:S50943 RefSeq:NP_013663.1
ProteinModelPortal:Q04693 DIP:DIP-856N IntAct:Q04693
MINT:MINT-368995 STRING:Q04693 PaxDb:Q04693 PeptideAtlas:Q04693
EnsemblFungi:YML049C GeneID:854956 KEGG:sce:YML049C CYGD:YML049c
eggNOG:KOG1898 HOGENOM:HOG000066036 OMA:DIHESVT NextBio:978033
Genevestigator:Q04693 GermOnline:YML049C Uniprot:Q04693
Length = 1361
Score = 166 (63.5 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 44/120 (36%), Positives = 64/120 (53%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLIVKIESM 134
+E +H+T + +AM F+ LL +G + LY LGKK+LLR+ + P I KI SM
Sbjct: 1019 IELLHQTEIISPIHAMLKFKNFLLTAMGSTIVLYGLGKKQLLRRSVTQ-TPVSITKIVSM 1077
Query: 135 GH----RIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN 190
R+ V D+ ESV L + N + + DD+ R +T LD TV AD++GN
Sbjct: 1078 HQWNYERLAVGDIHESVTLFIWDPAGNVFIPYVDDSVKRHVTVLKFLDEATVIGADRYGN 1137
>FB|FBgn0260962 [details] [associations]
symbol:pic "piccolo" species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=ISS;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0035220 "wing disc development"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0007307 "eggshell
chorion gene amplification" evidence=IDA] [GO:0007095 "mitotic G2
DNA damage checkpoint" evidence=IGI] InterPro:IPR004871
Pfam:PF03178 UniPathway:UPA00143 EMBL:AE014297 GO:GO:0005634
GO:GO:0005737 GO:GO:0007095 GO:GO:0043161 GO:GO:0003677
GO:GO:0006281 GO:GO:0035220 GO:GO:0042787 GO:GO:0007307
eggNOG:NOG247734 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
HSSP:Q16531 EMBL:AF132145 RefSeq:NP_650257.1 UniGene:Dm.3215
ProteinModelPortal:Q9XYZ5 SMR:Q9XYZ5 STRING:Q9XYZ5 PaxDb:Q9XYZ5
PRIDE:Q9XYZ5 EnsemblMetazoa:FBtr0082709 GeneID:41611
KEGG:dme:Dmel_CG7769 UCSC:CG7769-RA CTD:41611 FlyBase:FBgn0260962
InParanoid:Q9XYZ5 OrthoDB:EOG4S1RP0 PhylomeDB:Q9XYZ5
GenomeRNAi:41611 NextBio:824642 Bgee:Q9XYZ5 Uniprot:Q9XYZ5
Length = 1140
Score = 164 (62.8 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 40/125 (32%), Positives = 70/125 (56%)
Query: 73 NAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLR-KCENKHLPNLIVKI 131
N + V +T VD YA+ F G +L G+G ++RLY+ +K LR +C ++ N+I +
Sbjct: 857 NKLTQVAETKVDGTCYALVEFNGKVLAGIGSFVRLYEWTNEKELRMEC---NIQNMIAAL 913
Query: 132 --ESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFG 189
++ G I V D+ S+ L+++K+ E + A D +P+W+ +LD +T ++ G
Sbjct: 914 FLKAKGDFILVGDLMRSITLLQHKQMEGIFVEIARDCEPKWMRAVEILDDDTFLGSETNG 973
Query: 190 N--VC 192
N VC
Sbjct: 974 NLFVC 978
>UNIPROTKB|F5H0Y5 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 GO:GO:0016055
Gene3D:2.130.10.10 GO:GO:0003684 EMBL:AP003108 HGNC:HGNC:2717
ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909177
ProteinModelPortal:F5H0Y5 SMR:F5H0Y5 Ensembl:ENST00000539332
ArrayExpress:F5H0Y5 Bgee:F5H0Y5 Uniprot:F5H0Y5
Length = 204
Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 24 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKT 82
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 83 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 142
Query: 192 C 192
C
Sbjct: 143 C 143
>RGD|621889 [details] [associations]
symbol:Ddb1 "damage-specific DNA binding protein 1, 127kDa"
species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
checkpoint" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IMP]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA;ISO] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin
ligase complex" evidence=IEA;ISO;ISS] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=IEA;ISO;ISS] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IEA;ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process"
evidence=IEA;ISO;ISS] [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=ISO;ISS] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 RGD:621889 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 HOGENOM:HOG000007241
HOVERGEN:HBG005460 HSSP:Q16531 EMBL:AJ277077 IPI:IPI00324451
UniGene:Rn.8402 IntAct:Q9ESW0 MINT:MINT-4784948 STRING:Q9ESW0
PhosphoSite:Q9ESW0 PRIDE:Q9ESW0 UCSC:RGD:621889 InParanoid:Q9ESW0
ArrayExpress:Q9ESW0 Genevestigator:Q9ESW0 Uniprot:Q9ESW0
Length = 1140
Score = 137 (53.3 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 38/124 (30%), Positives = 59/124 (47%)
Query: 72 GNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VK 130
G ++ V + V Y+M F G LL + +RLY+ +K LR E H N++ +
Sbjct: 855 GGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALY 913
Query: 131 IESMGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN 190
+++ G I V D+ SV L+ YK E A D P W++ +LD + A+ N
Sbjct: 914 LKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFN 973
Query: 191 --VC 192
VC
Sbjct: 974 LFVC 977
>UNIPROTKB|B4DG00 [details] [associations]
symbol:DDB1 "cDNA FLJ52436, highly similar to DNA
damage-binding protein 1" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 EMBL:AP003108
UniGene:Hs.290758 HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037
EMBL:AK294341 IPI:IPI00909177 SMR:B4DG00 STRING:B4DG00
Ensembl:ENST00000450997 UCSC:uc010rle.1 HOGENOM:HOG000069916
HOVERGEN:HBG102355 Uniprot:B4DG00
Length = 451
Score = 132 (51.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 169 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKT 227
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 228 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 287
Query: 192 C 192
C
Sbjct: 288 C 288
>UNIPROTKB|F1M680 [details] [associations]
symbol:Ddb1 "DNA damage-binding protein 1" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 RGD:621889
GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 IPI:IPI00950036
Ensembl:ENSRNOT00000063867 ArrayExpress:F1M680 Uniprot:F1M680
Length = 600
Score = 132 (51.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 317 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKT 375
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 376 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 435
Query: 192 C 192
C
Sbjct: 436 C 436
>UNIPROTKB|Q6P6Z0 [details] [associations]
symbol:ddb1 "DNA damage-binding protein 1" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:BC061946
RefSeq:NP_001083624.1 UniGene:Xl.23906 PRIDE:Q6P6Z0 GeneID:399026
KEGG:xla:399026 Xenbase:XB-GENE-967911 Uniprot:Q6P6Z0
Length = 1140
Score = 132 (51.5 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRT-ECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
Query: 192 C 192
C
Sbjct: 977 C 977
Score = 38 (18.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 18 PFQGALLVGV-------G-RYLRLYDLGKKKLLRKCENKVRIKGFR 55
PF GA+++G G +YL + K+ C N+V + G R
Sbjct: 225 PFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDVNGSR 270
>UNIPROTKB|J9NVR7 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AAEX03011677
Ensembl:ENSCAFT00000049486 Uniprot:J9NVR7
Length = 1084
Score = 132 (51.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
Query: 192 C 192
C
Sbjct: 977 C 977
>UNIPROTKB|F5GY55 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:2717 ChiTaRS:DDB1
EMBL:AP003037 IPI:IPI00977083 SMR:F5GY55 Ensembl:ENST00000540166
Uniprot:F5GY55
Length = 1092
Score = 132 (51.5 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
Query: 192 C 192
C
Sbjct: 977 C 977
>UNIPROTKB|A1A4K3 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9913
"Bos taurus" [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin
ligase complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0000075 "cell cycle checkpoint" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
GO:GO:0042787 GO:GO:0000075 GO:GO:0031464 GO:GO:0031465
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
EMBL:BC126629 IPI:IPI00713891 RefSeq:NP_001073731.1
UniGene:Bt.62917 STRING:A1A4K3 PRIDE:A1A4K3
Ensembl:ENSBTAT00000028740 GeneID:511951 KEGG:bta:511951 CTD:1642
GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460 InParanoid:A1A4K3
OrthoDB:EOG4KPT91 NextBio:20870176 Uniprot:A1A4K3
Length = 1140
Score = 132 (51.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
Query: 192 C 192
C
Sbjct: 977 C 977
>UNIPROTKB|E2R9E3 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 KO:K10610 OMA:CALGDGS CTD:1642
GeneTree:ENSGT00530000063396 EMBL:AAEX03011677 RefSeq:XP_533275.2
Ensembl:ENSCAFT00000025824 GeneID:476067 KEGG:cfa:476067
NextBio:20851798 Uniprot:E2R9E3
Length = 1140
Score = 132 (51.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
Query: 192 C 192
C
Sbjct: 977 C 977
>UNIPROTKB|Q16531 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000075 "cell cycle checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IDA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=IDA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0000718 "nucleotide-excision repair, DNA damage removal"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 EMBL:U32986
GO:GO:0005737 GO:GO:0019048 GO:GO:0005654 GO:GO:0043161
GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003684 EMBL:CH471076
GO:GO:0042787 GO:GO:0000075 GO:GO:0000718 EMBL:AP003108
GO:GO:0031464 PDB:2HYE PDB:4A0K PDBsum:2HYE PDBsum:4A0K PDB:4A0L
PDBsum:4A0L GO:GO:0031465 PDB:3I7P PDBsum:3I7P PDB:3I8C PDBsum:3I8C
PDB:3I89 PDBsum:3I89 PDB:3I7O PDBsum:3I7O PDB:3I8E PDBsum:3I8E
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
CTD:1642 HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 EMBL:U18299
EMBL:L40326 EMBL:AJ002955 EMBL:AK312436 EMBL:AY960579 EMBL:BC011686
EMBL:BC050530 EMBL:BC051764 IPI:IPI00293464 PIR:I38908
RefSeq:NP_001914.3 UniGene:Hs.290758 PDB:2B5L PDB:2B5M PDB:2B5N
PDB:3E0C PDB:3EI1 PDB:3EI2 PDB:3EI3 PDB:3EI4 PDB:3I7H PDB:3I7K
PDB:3I7L PDB:3I7N PDB:4A08 PDB:4A09 PDB:4A0A PDB:4A0B PDB:4A11
PDB:4E54 PDB:4E5Z PDBsum:2B5L PDBsum:2B5M PDBsum:2B5N PDBsum:3E0C
PDBsum:3EI1 PDBsum:3EI2 PDBsum:3EI3 PDBsum:3EI4 PDBsum:3I7H
PDBsum:3I7K PDBsum:3I7L PDBsum:3I7N PDBsum:4A08 PDBsum:4A09
PDBsum:4A0A PDBsum:4A0B PDBsum:4A11 PDBsum:4E54 PDBsum:4E5Z
ProteinModelPortal:Q16531 SMR:Q16531 DIP:DIP-430N IntAct:Q16531
MINT:MINT-1134697 STRING:Q16531 PhosphoSite:Q16531 PaxDb:Q16531
PRIDE:Q16531 Ensembl:ENST00000301764 GeneID:1642 KEGG:hsa:1642
UCSC:uc001nrc.4 GeneCards:GC11M061066 H-InvDB:HIX0171380
HGNC:HGNC:2717 HPA:CAB032821 MIM:600045 neXtProt:NX_Q16531
PharmGKB:PA27187 InParanoid:Q16531 ChiTaRS:DDB1
EvolutionaryTrace:Q16531 GenomeRNAi:1642 NextBio:6750
ArrayExpress:Q16531 Bgee:Q16531 CleanEx:HS_DDB1
Genevestigator:Q16531 GermOnline:ENSG00000167986 Uniprot:Q16531
Length = 1140
Score = 132 (51.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
Query: 192 C 192
C
Sbjct: 977 C 977
>UNIPROTKB|F1RIE2 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
EMBL:CU462918 RefSeq:XP_003122699.1 Ensembl:ENSSSCT00000014314
GeneID:100522239 KEGG:ssc:100522239 Uniprot:F1RIE2
Length = 1140
Score = 132 (51.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
Query: 192 C 192
C
Sbjct: 977 C 977
>UNIPROTKB|P33194 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9534
"Chlorocebus aethiops" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING
ubiquitin ligase complex" evidence=ISS] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=ISS] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281 GO:GO:0016567
GO:GO:0031464 GO:GO:0031465 HOVERGEN:HBG005460 EMBL:L20216
PIR:S38777 PRIDE:P33194 Uniprot:P33194
Length = 1140
Score = 132 (51.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
Query: 192 C 192
C
Sbjct: 977 C 977
>MGI|MGI:1202384 [details] [associations]
symbol:Ddb1 "damage specific DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
evidence=ISO] [GO:0031465 "Cul4B-RING ubiquitin ligase complex"
evidence=ISO] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=ISO] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 MGI:MGI:1202384 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 KO:K10610 OMA:CALGDGS
CTD:1642 GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460
HSSP:Q16531 ChiTaRS:DDB1 EMBL:AB026432 EMBL:AF159853 EMBL:AK146522
EMBL:AK152228 EMBL:AK154303 EMBL:AK155020 EMBL:AK155920
EMBL:AK157491 EMBL:BC002210 EMBL:BC009661 IPI:IPI00316740
PIR:JC7152 RefSeq:NP_056550.1 UniGene:Mm.289915 UniGene:Mm.466856
ProteinModelPortal:Q3U1J4 SMR:Q3U1J4 IntAct:Q3U1J4 STRING:Q3U1J4
PaxDb:Q3U1J4 PRIDE:Q3U1J4 Ensembl:ENSMUST00000025649 GeneID:13194
KEGG:mmu:13194 UCSC:uc008gqm.1 InParanoid:Q3U1J4 NextBio:283320
Bgee:Q3U1J4 CleanEx:MM_DDB1 Genevestigator:Q3U1J4 Uniprot:Q3U1J4
Length = 1140
Score = 132 (51.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
Query: 192 C 192
C
Sbjct: 977 C 977
>ZFIN|ZDB-GENE-040426-1272 [details] [associations]
symbol:ddb1 "damage specific DNA binding protein
1" species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 ZFIN:ZDB-GENE-040426-1272
GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 EMBL:JQ692623
UniGene:Dr.77970 Uniprot:I1XUS8
Length = 1140
Score = 132 (51.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y+M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRT-ECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGSFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
Query: 192 C 192
C
Sbjct: 977 C 977
>UNIPROTKB|Q5R649 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9601
"Pongo abelii" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:CR860647
RefSeq:NP_001126613.1 UniGene:Pab.18111 GeneID:100173610
KEGG:pon:100173610 InParanoid:Q5R649 Uniprot:Q5R649
Length = 1140
Score = 130 (50.8 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 37/121 (30%), Positives = 57/121 (47%)
Query: 75 MEFVHKTSVDEVPYAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIES 133
++ V + V Y M F G LL + +RLY+ +K LR E H N++ + +++
Sbjct: 858 LQTVAEKEVKGAVYPMVEFNGKLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKT 916
Query: 134 MGHRIYVSDVQESVFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--V 191
G I V D+ SV L+ YK E A D P W++ +LD + A+ N V
Sbjct: 917 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFV 976
Query: 192 C 192
C
Sbjct: 977 C 977
>UNIPROTKB|F1NVV3 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
EMBL:AADN02017119 IPI:IPI00821712 Ensembl:ENSGALT00000040604
ArrayExpress:F1NVV3 Uniprot:F1NVV3
Length = 1119
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 35/108 (32%), Positives = 53/108 (49%)
Query: 88 YAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIESMGHRIYVSDVQES 146
Y+M F G LL + +RLY+ +K LR E H N++ + +++ G I V D+ S
Sbjct: 851 YSMVEFNGKLLASINSTVRLYEWTAEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRS 909
Query: 147 VFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--VC 192
V L+ YK E A D P W++ +LD + A+ N VC
Sbjct: 910 VLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVC 957
>UNIPROTKB|F1P4I8 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
EMBL:AADN02017119 IPI:IPI00818299 Ensembl:ENSGALT00000008352
ArrayExpress:F1P4I8 Uniprot:F1P4I8
Length = 1120
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 35/108 (32%), Positives = 53/108 (49%)
Query: 88 YAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIESMGHRIYVSDVQES 146
Y+M F G LL + +RLY+ +K LR E H N++ + +++ G I V D+ S
Sbjct: 851 YSMVEFNGKLLASINSTVRLYEWTAEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRS 909
Query: 147 VFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--VC 192
V L+ YK E A D P W++ +LD + A+ N VC
Sbjct: 910 VLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVC 957
>UNIPROTKB|F1NVV2 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000075 "cell cycle
checkpoint" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA]
[GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 OMA:CALGDGS GeneTree:ENSGT00530000063396
IPI:IPI00597295 EMBL:AADN02017118 EMBL:AADN02017119
Ensembl:ENSGALT00000040605 ArrayExpress:F1NVV2 Uniprot:F1NVV2
Length = 1123
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 35/108 (32%), Positives = 53/108 (49%)
Query: 88 YAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIESMGHRIYVSDVQES 146
Y+M F G LL + +RLY+ +K LR E H N++ + +++ G I V D+ S
Sbjct: 851 YSMVEFNGKLLASINSTVRLYEWTAEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRS 909
Query: 147 VFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--VC 192
V L+ YK E A D P W++ +LD + A+ N VC
Sbjct: 910 VLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVC 957
>UNIPROTKB|Q805F9 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0080008
"Cul4-RING ubiquitin ligase complex" evidence=ISS] [GO:0031465
"Cul4B-RING ubiquitin ligase complex" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005737 GO:GO:0005654
GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
GO:GO:0016567 Reactome:REACT_115612 GO:GO:0031464 GO:GO:0031465
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 CTD:1642
HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 HSSP:Q16531 EMBL:AB074298
EMBL:AJ719779 IPI:IPI00597295 RefSeq:NP_989547.1 UniGene:Gga.12977
STRING:Q805F9 PRIDE:Q805F9 GeneID:374050 KEGG:gga:374050
NextBio:20813572 Uniprot:Q805F9
Length = 1140
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 35/108 (32%), Positives = 53/108 (49%)
Query: 88 YAMCPFQGALLVGVGRYLRLYDLGKKKLLRKCENKHLPNLI-VKIESMGHRIYVSDVQES 146
Y+M F G LL + +RLY+ +K LR E H N++ + +++ G I V D+ S
Sbjct: 871 YSMVEFNGKLLASINSTVRLYEWTAEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRS 929
Query: 147 VFLVRYKRYENQLLIFADDTQPRWITTSCVLDYNTVASADKFGN--VC 192
V L+ YK E A D P W++ +LD + A+ N VC
Sbjct: 930 VLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVC 977
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.139 0.423 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 199 199 0.00085 111 3 11 22 0.42 32
31 0.45 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 41
No. of states in DFA: 589 (63 KB)
Total size of DFA: 161 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.57u 0.11s 17.68t Elapsed: 00:00:02
Total cpu time: 17.58u 0.11s 17.69t Elapsed: 00:00:02
Start: Thu Aug 15 15:40:50 2013 End: Thu Aug 15 15:40:52 2013