RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17021
         (199 letters)



>d1zmba1 c.23.10.7 (A:1-282) Acetylxylan esterase related enzyme
           {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 282

 Score = 27.4 bits (60), Expect = 1.2
 Identities = 8/47 (17%), Positives = 22/47 (46%)

Query: 119 CENKHLPNLIVKIESMGHRIYVSDVQESVFLVRYKRYENQLLIFADD 165
            EN+ L     +  +   +IY+  +  ++  + Y  + ++L+   +D
Sbjct: 236 NENELLNLNYARTHTKAEKIYIKSMDFALGKISYDEFTSELMKINND 282


>d1t3ta4 d.79.4.1 (A:221-429) FGAM synthase PurL, PurM-like module,
           N1 and N2 domains {Salmonella typhimurium [TaxId:
           90371]}
          Length = 209

 Score = 27.0 bits (59), Expect = 1.5
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 46  ENKVRIKGFRKAHQTHTHSGRSDRLVGNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRYL 105
           +N   ++G         H+             + K      P A+ P+ GA   G G  +
Sbjct: 38  DNAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMKVETHNHPTAISPWPGA-ATGSGGEI 96

Query: 106 R 106
           R
Sbjct: 97  R 97


>d1vk3a1 d.79.4.1 (A:2-166) Phosphoribosylformylglycinamidine
           synthase II, domains 1 and 3 {Thermotoga maritima
           [TaxId: 2336]}
          Length = 165

 Score = 26.2 bits (57), Expect = 2.4
 Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 4/59 (6%)

Query: 50  RIKGFRKAHQTHTHSGRSD----RLVGNAMEFVHKTSVDEVPYAMCPFQGALLVGVGRY 104
                +K  +    +G         + +      K      P A+ P+ GA     G  
Sbjct: 33  GYSHTKKYIRRLPKTGFEGNAGVVNLDDYYSVAFKIESHNHPSAIEPYNGAATGVGGII 91



 Score = 25.0 bits (54), Expect = 5.7
 Identities = 7/30 (23%), Positives = 9/30 (30%)

Query: 1  MEFVHKTSVDEVPYAMCPFQGALLVGVGRY 30
               K      P A+ P+ GA     G  
Sbjct: 62 YSVAFKIESHNHPSAIEPYNGAATGVGGII 91


>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 117

 Score = 24.9 bits (54), Expect = 4.4
 Identities = 9/41 (21%), Positives = 15/41 (36%)

Query: 117 RKCENKHLPNLIVKIESMGHRIYVSDVQESVFLVRYKRYEN 157
           +    KH P     +   G  +   DV   V+  RY  + +
Sbjct: 26  KHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 737,670
Number of extensions: 32923
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 6
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.3 bits)