BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17022
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 112/212 (52%), Gaps = 51/212 (24%)
Query: 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYR 60
+AGDF+L+ AC ++ L++ +V
Sbjct: 133 LAGDFLLSRACGALAALKNTEVV------------------------------------- 155
Query: 61 KTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAML 120
+L+A V+ LV GE M++ S +Y+ KTY KTASLI+N KA A+L
Sbjct: 156 ---ALLATAVE----HLVTGETMEITSSTAARYSMDYYMQKTYYKTASLISNSCKAVAVL 208
Query: 121 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACE 180
G +++ +AFEYGRNLG+AFQL+DD+LDF +S ++GK + +D++ G+ TAP+LFA E
Sbjct: 209 TGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAME 268
Query: 181 KSAMLG------GADDKLSEVAFEY-GRNLGI 205
+ L AD + ++A EY G++ GI
Sbjct: 269 EFPQLREVVDQVAADPRNVDIALEYLGKSKGI 300
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 82/110 (74%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C+ A+L G +++ +AFEYGRNLG+AFQL+DD+LDF +S ++GK + +D++ G+ T
Sbjct: 201 SCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVIT 260
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287
AP+LFA E+FP+L ++ + +P +V+ A E++ KS+G+++ + LA +H
Sbjct: 261 APILFAMEEFPQLREVVDQVAADPRNVDIALEYLGKSKGIQRARELAMEH 310
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 113/212 (53%), Gaps = 51/212 (24%)
Query: 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYR 60
+AGDF+L+ AC ++ L++ +V
Sbjct: 133 LAGDFLLSRACGALAALKNTEVV------------------------------------- 155
Query: 61 KTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAML 120
+L+A V+ LV GE M++ S + +Y+ KTY KTASLI+N KA A+L
Sbjct: 156 ---ALLATAVE----HLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVL 208
Query: 121 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACE 180
G +++ +AFEYGRNLG+AFQL+DD+LDF +S ++GK + +D++ G+ TAP+LFA E
Sbjct: 209 TGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAME 268
Query: 181 KSAMLGGADDKLS------EVAFEY-GRNLGI 205
+ L D++ ++A EY G++ GI
Sbjct: 269 EFPQLREVVDQVEKDPRNVDIALEYLGKSKGI 300
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 83/110 (75%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C+ A+L G +++ +AFEYGRNLG+AFQL+DD+LDF +S ++GK + +D++ G+ T
Sbjct: 201 SCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVIT 260
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287
AP+LFA E+FP+L ++ + ++P +V+ A E++ KS+G+++ + LA +H
Sbjct: 261 APILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEH 310
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%)
Query: 77 LVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGR 136
+ +GE +QL N A YL KTA L A +A A+ G D SE +YG
Sbjct: 163 IAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGL 222
Query: 137 NLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182
NLG+AFQL DD LD+ +++ +GK D + G AT P+L A +S
Sbjct: 223 NLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARS 268
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
A E A+ G D SE +YG NLG+AFQL DD LD+ +++ +GK D + G AT
Sbjct: 199 ASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKAT 258
Query: 238 APVLFACEKF-PE----LNPMIMRRFQEPGDVEKAFEFVHKSQGLEQT 280
P+L A + P I RR Q D +A E + S L+ T
Sbjct: 259 LPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDAT 306
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
A E ++GGA + + F+YG LGIAFQ+VDDLLD+ S +GK T D + T
Sbjct: 187 ATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLT 246
Query: 238 APVLFACEKFPELNPMIMRRF-----QEPGDVEKAFEFVHKSQGLEQTKFLA 284
PV+ A E +R Q+ GD+E A + K LE T+ A
Sbjct: 247 MPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAA 298
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 61 KTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAML 120
+ ++AN I +GE +QL + + YL KTA+L + + ++
Sbjct: 139 RVMEILANASAVI----AEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGII 194
Query: 121 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFAC 179
GGA + + F+YG LGIAFQ+VDDLLD+ S +GK T D + T PV+ A
Sbjct: 195 GGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAV 253
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 80 GEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAF----EYG 135
GEF Q+ + F YL + RKTA LI +AS LG +L E + ++G
Sbjct: 145 GEFDQMADRFNYPVSFTAYLRRINRKTAILI----EASCHLGALSSQLDEQSTYHIKQFG 200
Query: 136 RNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEV 195
+G+++Q++DD+LD+ S +GKP +D++ G T P++ A + + DDKL V
Sbjct: 201 HCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAI--ANLKEQDDDKLEAV 258
Query: 196 A 196
Sbjct: 259 V 259
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 12/149 (8%)
Query: 150 DFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAF----EYGRNLGI 205
+F +D P + L E S LG +L E + ++G +G+
Sbjct: 146 EFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGM 205
Query: 206 AFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELN----PMIMRRFQEP 261
++Q++DD+LD+ S +GKP +D++ G T P++ A E + +++
Sbjct: 206 SYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTST 265
Query: 262 GDVEKAFEFV---HKSQGLEQTKFLARKH 287
D ++ ++++ K G+E + L+RK+
Sbjct: 266 SD-DEVYQYIVSQVKQYGIEPAELLSRKY 293
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 61 KTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAML 120
K LIA + + L +GE + E N Y KTA I +K+ A+L
Sbjct: 118 KMGELIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAIL 177
Query: 121 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACE 180
D K + ++G N G+AFQ++DDLLD + +GKP +D K G T P L E
Sbjct: 178 LNKDAK---IYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYE 234
Query: 181 K 181
K
Sbjct: 235 K 235
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 190 DKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE 249
+K +++ ++G N G+AFQ++DDLLD + +GKP +D K G T P L EK +
Sbjct: 179 NKDAKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQ 238
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%)
Query: 77 LVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGR 136
L+ G+ + + + L KT +L+A A+LGGAD++ ++ +YG
Sbjct: 155 LIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGY 214
Query: 137 NLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVL 176
+LG+AFQ VDDLL DA GK T +DL+ + PV+
Sbjct: 215 HLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVV 254
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 176 LFACEKS--AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKL 233
L AC S A+LGGAD++ ++ +YG +LG+AFQ VDDLL DA GK T +DL+
Sbjct: 187 LLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQ 246
Query: 234 GLATAPVL 241
+ PV+
Sbjct: 247 RKKSLPVV 254
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 76 DLVQGEFMQ-LGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEY 134
+LV G+ + +G ++T+ HY KT LIA+ AM GA + + +
Sbjct: 171 ELVTGQMRETVGPRDTDP--IEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNF 228
Query: 135 GRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLG 186
G +G+ FQ+VDD++D S + GK DL+ G+ T PVL+A + +G
Sbjct: 229 GAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVG 280
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 183 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
AM GA + + +G +G+ FQ+VDD++D S + GK DL+ G+ T PVL+
Sbjct: 212 AMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLY 271
Query: 243 AC-EKFP---ELNPMIMRRFQEPGDVEKAFEFVHKSQG 276
A E P EL ++ ++ V E + +S G
Sbjct: 272 ALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGG 309
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 61 KTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAML 120
K A ++ VKA +L +G+ L ++ Y+ KT +L K ++
Sbjct: 134 KKARVLEVIVKA-SNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGII 192
Query: 121 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 172
G +++ + +GRN+GIAFQ+ DD+LD I+ +GKP +D++ G T
Sbjct: 193 GTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKT 244
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 180 EKSAMLGGA----DDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGL 235
E SA +GG +++ + +GRN+GIAFQ+ DD+LD I+ +GKP +D++ G
Sbjct: 183 EASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGK 242
Query: 236 AT 237
T
Sbjct: 243 KT 244
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 51 FAHYLTKTYRKTA--SLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTAS 108
F Y + + T SLI N + A M ++QGE Q+ E+ YL + KTA
Sbjct: 121 FTVYFDQVLKSTTDRSLIQNHIDA-MHRILQGELHQMDLNYREDITLDAYLNEIAGKTAE 179
Query: 109 LIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKL 168
L A A L GA + + + G +G A+Q++DD+LD+ KP DL+
Sbjct: 180 LFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRS 239
Query: 169 GL 170
G+
Sbjct: 240 GV 241
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGL 235
+C + A L GA + + + G +G A+Q++DD+LD+ KP DL+ G+
Sbjct: 183 LSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGV 241
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 51 FAHYLTKTYRKTA--SLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTAS 108
F Y + + T SLI N + A M ++QGE Q+ E+ YL + KTA
Sbjct: 128 FTVYFDQVLKSTTDRSLIQNHIDA-MHRILQGELHQMDLNYREDITLDAYLNEIAGKTAE 186
Query: 109 LIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKL 168
L A A L GA + + + G +G A+Q++DD+LD+ KP DL+
Sbjct: 187 LFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRS 246
Query: 169 GL 170
G+
Sbjct: 247 GV 248
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGL 235
+C + A L GA + + + G +G A+Q++DD+LD+ KP DL+ G+
Sbjct: 190 LSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGV 248
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 76 DLVQGEFMQLGSKETENERFAH--YLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFE 133
D +GE + L + E+E F Y Y+KTASL A A GGA+++L+E
Sbjct: 138 DXAEGEVLDL---KLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSH 194
Query: 134 YGRNLGIAFQLVDDLLDFI 152
+G LG A+Q+VDD+L+F+
Sbjct: 195 FGNALGTAYQIVDDILEFL 213
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 176 LFACEKS--AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 217
LFA S A GGA+++L+E +G LG A+Q+VDD+L+F+
Sbjct: 170 LFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFL 213
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%)
Query: 77 LVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGR 136
LV G+ + + S+ H + KTA+L+ V A+LGG ++ ++
Sbjct: 152 LVAGQVVDVCSEGMAEVGLDHLEFIHHHKTAALLQGSVVLGAILGGGKEEEVAKLRKFAN 211
Query: 137 NLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182
+G+ FQ+VDD+LD SS +GK DL T P L EKS
Sbjct: 212 CIGLLFQVVDDILDVTKSSKELGKTAGKDLVADKTTYPKLIGVEKS 257
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 183 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
A+LGG ++ ++ +G+ FQ+VDD+LD SS +GK DL T P L
Sbjct: 193 AILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKDLVADKTTYPKLI 252
Query: 243 ACEKFPELNPMIMRRFQE 260
EK E + R QE
Sbjct: 253 GVEKSKEFADRLNREAQE 270
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 99 LTKTYR-KTASLIANCVKASAMLGGADDKLS-EVAFEYGRNLGIAFQLVDDLLDFISSSD 156
L + +R KT +LI V+ A+ G + + V +Y ++G+AFQ+ DD+LD + +
Sbjct: 175 LERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTA 234
Query: 157 AMGKPTAADLKLGLATAPVLFACEKS 182
+GK AD +LG +T P L E++
Sbjct: 235 TLGKRQGADQQLGKSTYPALLGLEQA 260
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 198 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEK 246
+Y ++G+AFQ+ DD+LD + + +GK AD +LG +T P L E+
Sbjct: 211 KYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQ 259
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 99 LTKTYR-KTASLIANCVKASAMLGGADDKLS-EVAFEYGRNLGIAFQLVDDLLDFISSSD 156
L + +R KT +LI V+ A+ G + + V +Y ++G+AFQ+ DD+LD + +
Sbjct: 174 LERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTA 233
Query: 157 AMGKPTAADLKLGLATAPVLFACEKS 182
+GK AD +LG +T P L E++
Sbjct: 234 TLGKRQGADQQLGKSTYPALLGLEQA 259
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 198 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEK 246
+Y ++G+AFQ+ DD+LD + + +GK AD +LG +T P L E+
Sbjct: 210 KYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQ 258
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 99 LTKTYR-KTASLIANCVKASAMLGGADDKLS-EVAFEYGRNLGIAFQLVDDLLDFISSSD 156
L + +R KT +LI V+ A+ G + + V +Y ++G+AFQ+ DD+LD + +
Sbjct: 198 LERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTA 257
Query: 157 AMGKPTAADLKLGLATAPVLFACEKS 182
+GK AD +LG +T P L E++
Sbjct: 258 TLGKRQGADQQLGKSTYPALLGLEQA 283
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 198 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEK 246
+Y ++G+AFQ+ DD+LD + + +GK AD +LG +T P L E+
Sbjct: 234 KYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQ 282
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 68 NCVKAIMTDLVQGEFMQ--LGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADD 125
+ + T+++ G+ + L S E+ A + + ++ A IA + A + G
Sbjct: 178 DAWRGXRTEVIGGQLLDIYLESHANESVELADSVNR-FKTAAYTIARPLHLGASIAGGSP 236
Query: 126 KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182
+L + YG ++GIAFQL DDLL GKP D++ G T + A +++
Sbjct: 237 QLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRA 293
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 183 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
A + G +L + YG ++GIAFQL DDLL GKP D++ G T +
Sbjct: 229 ASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLAL 288
Query: 243 ACEKFPELNP 252
A ++ + +P
Sbjct: 289 ALQRADKQSP 298
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
FACE A++ G++ + +G +G++FQL DDLLD + + MGK T D G
Sbjct: 228 FACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKG 287
Query: 237 TAPVL----FACEKFPE 249
T L +A EK E
Sbjct: 288 TLVALRGEAWAREKLQE 304
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 105 KTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAA 164
KT +L+ +A A++ G++ + +G +G++FQL DDLLD + + MGK T
Sbjct: 221 KTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGK 280
Query: 165 DLKLGLAT 172
D G T
Sbjct: 281 DAARGKGT 288
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 147 DLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIA 206
+L++ +S + K + G + A A + A+L G +L E + G +G
Sbjct: 143 ELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTI 199
Query: 207 FQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRR 257
+Q+ DD++DF + + +GK DLK G+A+ P++ A EKFPE M R
Sbjct: 200 YQMFDDIMDF-AGMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFENR 249
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 147 DLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIA 206
+L++ +S + K + G + A A + A+L G +L E + G +G
Sbjct: 143 ELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTI 199
Query: 207 FQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRR 257
+Q+ DD++DF + + +GK DLK G+A+ P++ A EKFPE M R
Sbjct: 200 YQMFDDIMDF-AGMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFENR 249
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 105 KTASLIANCVKASAMLGGADDKLSEVAFE-YGRNLGIAFQLVDDLLDFISSSDAMGKPTA 163
KT +L+ ++ A+ G + + Y +G+AFQ+ DD+LD IS ++ +GKP
Sbjct: 187 KTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQG 246
Query: 164 ADLKLGLATAPVLFACE 180
+D +L +T P L E
Sbjct: 247 SDQELNKSTYPALLGLE 263
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 199 YGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACE 245
Y +G+AFQ+ DD+LD IS ++ +GKP +D +L +T P L E
Sbjct: 217 YAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLE 263
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A + A+L G +L E + G +G +Q+ DD++DF + + +GK DLK G+A
Sbjct: 173 LALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGMEKIGKDGFLDLKNGVA 228
Query: 237 TAPVLFACEKFPELNPMIMRR 257
+ P++ A EKFPE M R
Sbjct: 229 SFPLVTAMEKFPEARQMFENR 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 97 HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
YL K+ +L ++ A+L G +L E + G +G +Q+ DD++DF + +
Sbjct: 158 EYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDF-AGME 213
Query: 157 AMGKPTAADLKLGLATAPVLFACEK 181
+GK DLK G+A+ P++ A EK
Sbjct: 214 KIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 98 YLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDA 157
Y+ KT +LIA K + D L+E A+ +G G+AFQ++DD+LD
Sbjct: 177 YIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKK 236
Query: 158 MGKPTAADLK 167
GK D+K
Sbjct: 237 FGKEIGKDIK 246
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 168 LGLATAPVLFACEKSAMLGGADDK-LSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKP 226
+ L T ++ A K +L +DD+ L+E A+ +G G+AFQ++DD+LD GK
Sbjct: 181 VSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKE 240
Query: 227 TAADLK 232
D+K
Sbjct: 241 IGKDIK 246
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 77 LVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGA--DDKLSEVAFEY 134
++ G+ + L S E +N A KT +LI V+ A+ G ++L+++ Y
Sbjct: 153 MITGQMIDLSS-ENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLD-AY 210
Query: 135 GRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSE 194
+G+AFQ+ DD++D S ++ +GK +D + AT P L + + L +L E
Sbjct: 211 AHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVV---RLHE 267
Query: 195 VAFEYGRNLGIAFQLVDDLLDFI 217
A G Q + DL ++I
Sbjct: 268 QAIAQISEFGDKSQPLTDLANYI 290
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 199 YGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRF 258
Y +G+AFQ+ DD++D S ++ +GK +D + AT P L + L + R
Sbjct: 210 YAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKAL----VVRL 265
Query: 259 QEPGDVEKAFEFVHKSQGL 277
E + + EF KSQ L
Sbjct: 266 HEQA-IAQISEFGDKSQPL 283
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 53 HYLTKTYRKTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTY----RKTAS 108
+LT T A++ A V+A+ T + +K+ ++E L++ KT +
Sbjct: 129 QWLTAT-DLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGA 187
Query: 109 LIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 165
L+ V+A +LG A + ++ G+AFQ+ DD+LD +SS MGK T D
Sbjct: 188 LLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKD 244
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 230
+A + +LG A + ++ G+AFQ+ DD+LD +SS MGK T D
Sbjct: 191 YAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKD 244
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 18/116 (15%)
Query: 104 RKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTA 163
KTA LIA +K + +++ S ++ G LG+ FQ+ DD++D +S + GKPT
Sbjct: 173 HKTARLIAAALKXGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTN 232
Query: 164 ADLK-------LGLATA-----PVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAF 207
D+ LGL A +L CE+ +KL+E + +NL I +
Sbjct: 233 NDIHKNSFVNLLGLEQAIKTKENLLNECEQDL------EKLNEKLAQXIQNLIIQY 282
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 47/194 (24%)
Query: 99 LTKTY-RKTASLIANCVKASAMLGGADDKLSE---------VAFEYGRNLGIAFQLVD-- 146
L K+Y TA L+ + + A L + L + +AF G N + Q +D
Sbjct: 97 LHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGXVIGQAIDCF 156
Query: 147 --------DLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFE 198
+ L+F+ + + AA LK G CE + +++ S ++
Sbjct: 157 FEDKRLSLNELEFLHTHKT-ARLIAAALKXG---------CEICEL----NNEESNQIYK 202
Query: 199 YGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLK-------LGLATA-----PVLFACEK 246
G LG+ FQ+ DD++D +S + GKPT D+ LGL A +L CE+
Sbjct: 203 LGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLNECEQ 262
Query: 247 -FPELNPMIMRRFQ 259
+LN + + Q
Sbjct: 263 DLEKLNEKLAQXIQ 276
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 66 IANCVKAIMTD-LVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGAD 124
+ KAI T+ LV G+ + + + E+ +F H KTA+L+ ++GG
Sbjct: 132 VGELAKAIGTEGLVAGQVVDISNVGLEHLKFIHL-----HKTAALLEASAVLGGIIGGGS 186
Query: 125 DKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAM 184
D+ E ++ R +G+ FQ+VDD+LD ++ +D + P L+ A L + +
Sbjct: 187 DEEIERLRKFARCIGLLFQVVDDILD-VTIADKLTYPKLMGLEKSREFAEKLNTEARDQL 245
Query: 185 LGGADDKLS 193
LG DK++
Sbjct: 246 LGFDSDKVA 254
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 184 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKP 226
++GG D+ E ++ R +G+ FQ+VDD+LD ++ +D + P
Sbjct: 181 IIGGGSDEEIERLRKFARCIGLLFQVVDDILD-VTIADKLTYP 222
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 105 KTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAA 164
KT +L+ V ++A + DD E Y +LG+ FQ+ DDLLD +GK +
Sbjct: 177 KTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGS 236
Query: 165 DLKLGLATAPVLFACEKSAMLGGADDKLS 193
DL+ +T L + GA+DKL+
Sbjct: 237 DLENNKSTYVSLLGKD------GAEDKLT 259
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 123 ADDKLS-EVAFEYGRNLGIAFQLVD----DLLDFISSSDAMGKPTAADLKLGLATAPVLF 177
+DD+L+ EV + + L IA V +LD S + T + A + F
Sbjct: 125 SDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTF 184
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
A +A + DD E Y +LG+ FQ+ DDLLD +GK +DL+ +T
Sbjct: 185 AVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKST 244
Query: 238 APVLFA 243
L
Sbjct: 245 YVSLLG 250
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 104 RKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTA 163
+KT +LI + A +L +++ + ++ + G+AFQ+ DDLLD S+ +GK
Sbjct: 184 KKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVG 243
Query: 164 ADLKLGLATAPVLFACEKSAMLGGADDKLSE 194
D L +T P L + GA D L+
Sbjct: 244 RDEALNKSTYPALLG------IAGAKDALTH 268
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 173 APVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLK 232
A + FA +L +++ + ++ + G+AFQ+ DDLLD S+ +GK D
Sbjct: 188 ALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEA 247
Query: 233 LGLATAPVLFAC 244
L +T P L
Sbjct: 248 LNKSTYPALLGI 259
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 66 IANCVKAIMTD-LVQGEFMQLGSK--ETENERFAHYLTKTYRKTASLIANCVKASAMLGG 122
+ KAI T+ LV G+ + + S+ + N H KTA+L+ ++GG
Sbjct: 150 VGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG 209
Query: 123 ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSS 155
D+ E ++ R +G+ FQ+VDD+LD SS
Sbjct: 210 GSDEEIERLRKFARCIGLLFQVVDDILDVTKSS 242
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 184 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSS 220
++GG D+ E ++ R +G+ FQ+VDD+LD SS
Sbjct: 206 IIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS 242
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 194 EVAFE--YGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE-L 250
EVAF G +GI FQ+ DD+ D+ S +GKPT D+ G T P L+A +
Sbjct: 195 EVAFARLLGEYIGICFQIKDDIFDYFDSK-KIGKPTGNDMLEGKLTLPALYALNTTKDAW 253
Query: 251 NPMIMRRFQE----PGDVEKAFEFVHKSQGLE 278
I + +E P ++ + EF + G+E
Sbjct: 254 AEQIAFKVKEGTATPDEIVRLIEFTKDNGGIE 285
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 9/117 (7%)
Query: 66 IANCVKAIMTDLVQGEFMQLGSKETENERFAH--YLTKTYRKTASLIANCVKASAMLGGA 123
I V ++ L +GE +QL + N F+ Y +KTA+L A C +A+A+
Sbjct: 134 IIRLVSSLGQKLAEGELLQLSN--VSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQV 191
Query: 124 DDKLSEVAFE--YGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 178
++ EVAF G +GI FQ+ DD+ D+ S +GKPT D+ G T P L+A
Sbjct: 192 GEE--EVAFARLLGEYIGICFQIKDDIFDYFDSK-KIGKPTGNDMLEGKLTLPALYA 245
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 105 KTASLIANCVKASAMLGGADDKLSEVAFE-YGRNLGIAFQLVDDLLDFISSSDAMGKPTA 163
KT +LI V A+ G +K A + Y + +G+AFQ+ DD+LD S + +GK
Sbjct: 181 KTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQG 240
Query: 164 ADLKLGLATAPVLF 177
AD+ T P L
Sbjct: 241 ADIARDKPTYPALL 254
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 199 YGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
Y + +G+AFQ+ DD+LD S + +GK AD+ T P L
Sbjct: 211 YAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALL 254
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 105 KTASLIANCVKASAMLGGADDKLSEVAFE-YGRNLGIAFQLVDDLLDFISSSDAMGKPTA 163
KT +LI V A+ G +K A + Y + +G+AFQ+ DD+LD S + +GK
Sbjct: 188 KTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQG 247
Query: 164 ADLKLGLATAPVLF 177
AD+ T P L
Sbjct: 248 ADIARDKPTYPALL 261
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 199 YGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
Y + +G+AFQ+ DD+LD S + +GK AD+ T P L
Sbjct: 218 YAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALL 261
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 105 KTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160
KT +LI+ +A A+L GAD Y LG+AFQ+ DD+LD + +A GK
Sbjct: 178 KTGALISFAAQAGAILAGADRGPLTA---YATALGLAFQIADDILDVEGNEEAAGK 230
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 166 LKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 225
L+ G A + FA + A+L GAD Y LG+AFQ+ DD+LD + +A GK
Sbjct: 174 LQAGKTGALISFAAQAGAILAGADRGPLTA---YATALGLAFQIADDILDVEGNEEAAGK 230
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 105 KTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160
KT +LI+ +A A+L GAD Y LG+AFQ+ DD+LD + +A GK
Sbjct: 179 KTGALISFAAQAGAILAGADRGPLTA---YATALGLAFQIADDILDVEGNEEAAGK 231
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 166 LKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 225
L+ G A + FA + A+L GAD Y LG+AFQ+ DD+LD + +A GK
Sbjct: 175 LQAGKTGALISFAAQAGAILAGADRGPLTA---YATALGLAFQIADDILDVEGNEEAAGK 231
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 104 RKTASLIANCVKASAMLGGADDKLSEVAFE----YGRNLGIAFQLVDDLLDFISSSDAMG 159
RKT +LI V+ + + A L F+ Y + +G+AFQ+ DD+LD S + +G
Sbjct: 186 RKTGALIRASVRLACL---ARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLG 242
Query: 160 KPTAADLKLGLATAPVLFACEKSAMLGGADDK---LSEVAFEYGRNLGIAFQLVDDLLDF 216
K D P L L GA +K + E A E G L+ +L F
Sbjct: 243 KTRGKDRDHNKPNYPALLG------LSGAKEKAEEMHEAALESLAGFGPEADLLRELARF 296
Query: 217 I 217
I
Sbjct: 297 I 297
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 198 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
Y + +G+AFQ+ DD+LD S + +GK D P L
Sbjct: 216 HYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALL 260
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 104 RKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTA 163
+KT LI + + A+L A + + +G LG+AFQ+ DD+LD + ++ +GK
Sbjct: 209 KKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVH 268
Query: 164 ADLKLGLATAPVLFACEK 181
D + +F E+
Sbjct: 269 KDQESNKNNYITIFGLEE 286
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 199 YGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEK 246
+G LG+AFQ+ DD+LD + ++ +GK D + +F E+
Sbjct: 239 FGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEE 286
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 106 TASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 165
T +L A C A +L G D + G G+AFQ+ DDL D + S + +GK D
Sbjct: 176 TGALFAFCFSAPFILXGXDHTXMXL---LGEXFGVAFQIYDDLXDILGSFEKVGKDLGKD 232
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 200 GRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 230
G G+AFQ+ DDL D + S + +GK D
Sbjct: 202 GEXFGVAFQIYDDLXDILGSFEKVGKDLGKD 232
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 17/101 (16%)
Query: 74 MTDLVQGEFMQLG----SKETENE-RFAHYLTKTYRKTASLIANCVKASAMLGGADDKLS 128
++ +V G+ + L S TE + R H L KT LI C + M+ A ++S
Sbjct: 157 ISGMVSGQSLDLSELAKSSVTEEQLREIHLL-----KTGKLILACFE---MVLAAQHEVS 208
Query: 129 E----VAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 165
E YG+++G+ FQ+ DD LD + + +GK ++D
Sbjct: 209 EQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSD 249
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 170 LATAPVLFACEKSAMLGGADDKLSE----VAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 225
L T ++ AC + M+ A ++SE YG+++G+ FQ+ DD LD + + +GK
Sbjct: 187 LKTGKLILACFE--MVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGK 244
Query: 226 PTAADLKLGLATAPVLFACEKFPE 249
++D T LF ++ E
Sbjct: 245 GRSSDQANQKTTFATLFNKQQLEE 268
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 104 RKTASLI-ANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPT 162
KTA LI A+ + G D++L + +G +G+ FQ++DD++D + GK T
Sbjct: 187 HKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTT 246
Query: 163 AAD 165
D
Sbjct: 247 HLD 249
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 186 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 230
G D++L + +G +G+ FQ++DD++D + GK T D
Sbjct: 205 GIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD 249
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 104 RKTASLI-ANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPT 162
KTA LI A+ + G D++L + +G +G+ FQ++DD++D + GK T
Sbjct: 194 HKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTT 253
Query: 163 AAD 165
D
Sbjct: 254 HLD 256
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 186 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 230
G D++L + +G +G+ FQ++DD++D + GK T D
Sbjct: 212 GIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD 256
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 182 SAMLGGADDKLSEVAFEYGR-NLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPV 240
A+L G K A+E G LG AFQ+VDD+L+ + +A GK A DL G T +
Sbjct: 185 GALLAG---KTPPAAYEEGGLRLGTAFQIVDDVLN-LEGGEAYGKERAGDLYEGKRTLIL 240
Query: 241 LFACEKFP 248
L E+ P
Sbjct: 241 LRFLEEAP 248
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 114 VKASAMLGGADDKLSEVAFEYGR-NLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 172
++ A+L G K A+E G LG AFQ+VDD+L+ + +A GK A DL G T
Sbjct: 182 LRLGALLAG---KTPPAAYEEGGLRLGTAFQIVDDVLN-LEGGEAYGKERAGDLYEGKRT 237
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 194 EVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPM 253
E A E R+LG D+L+D ++ SD + TAA + + V A K +P+
Sbjct: 202 ERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHPV-IHVDDVREALRKRDRRSPI 260
Query: 254 IMRRFQEPGDVEKAFEFVH--KSQGLEQTKFLARKH 287
++ P DVE+ E + + + ++ + +AR++
Sbjct: 261 LIIDIANPRDVEEGVENIEDVEVRTIDDLRVIAREN 296
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 124 DDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSA 183
D +++E EYGR G + L + + + + +AA +L +AT+ V A A
Sbjct: 79 DPRVAEATEEYGRRFGAHVRAAGPRLLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIA 138
Query: 184 MLGGADDKLSEVA 196
L G D +L+ +A
Sbjct: 139 ELTGLDTRLTVIA 151
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 138 LGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAF 197
+G FQ+ DD LD S GK +D++ T P++ K+ L DK+ V
Sbjct: 279 MGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLI----KTFELCSEPDKIKIVK- 332
Query: 198 EYGRNLGIAFQLVDDLLD 215
YG+N +++D L +
Sbjct: 333 NYGKNNLACVKVIDSLYE 350
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 138 LGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAF 197
+G FQ+ DD LD S GK +D++ T P++ K+ L DK+ V
Sbjct: 278 MGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLI----KTFELCSEPDKIKIVK- 331
Query: 198 EYGRNLGIAFQLVDDLLD 215
YG+N +++D L +
Sbjct: 332 NYGKNNLACVKVIDSLYE 349
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 203 LGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPM--IMRRFQE 260
LG+ FQ+ DD + S + K DL G + P + A PE + I+R+ E
Sbjct: 181 LGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTE 240
Query: 261 PGDVEK 266
D++K
Sbjct: 241 NIDIKK 246
>pdb|3E9O|A Chain A, Crystal Structure Of Yeast Prp8, Residues 1836-2092
Length = 258
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 125 DKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPT 162
DKLS+V + + F + DD LD ISS A + T
Sbjct: 143 DKLSDVVXKATEPQXVLFNIYDDWLDRISSYTAFSRLT 180
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 190 DKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPT 227
DKLS+V + + F + DD LD ISS A + T
Sbjct: 143 DKLSDVVXKATEPQXVLFNIYDDWLDRISSYTAFSRLT 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,386,235
Number of Sequences: 62578
Number of extensions: 271742
Number of successful extensions: 842
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 135
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)