BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17022
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5T2R2|DPS1_HUMAN Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1
PE=1 SV=1
Length = 415
Score = 167 bits (424), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 75/109 (68%), Positives = 94/109 (86%)
Query: 73 IMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAF 132
++ DLV+GEF+QLGSKE ENERFAHYL KT++KTASLIAN KA ++LG D + E+A+
Sbjct: 234 VIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAY 293
Query: 133 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEK 181
+YG+N+GIAFQL+DD+LDF S SD MGKPT+ADLKLGLAT PVLFAC++
Sbjct: 294 QYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQ 342
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 92/110 (83%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C+ ++LG D + E+A++YG+N+GIAFQL+DD+LDF S SD MGKPT+ADLKLGLAT
Sbjct: 274 SCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLAT 333
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287
PVLFAC++FPE+N MIMRRF PGDV++A ++V +S G++QT +LA+++
Sbjct: 334 GPVLFACQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQY 383
>sp|Q33DR2|DPS1_MOUSE Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1
PE=1 SV=1
Length = 409
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 74/109 (67%), Positives = 94/109 (86%)
Query: 73 IMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAF 132
++ DLV+GEF+QLGSKE ENERFAHYL KT++KTASLIAN KA ++LG D + E+A+
Sbjct: 228 VIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAY 287
Query: 133 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEK 181
+YG+N+GIAFQL+DD+LDF S SD MGKPT+ADLKLG+AT PVLFAC++
Sbjct: 288 QYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGIATGPVLFACQQ 336
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 92/110 (83%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C+ ++LG D + E+A++YG+N+GIAFQL+DD+LDF S SD MGKPT+ADLKLG+AT
Sbjct: 268 SCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGIAT 327
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287
PVLFAC++FPE+N MIMRRF PGDV++A ++V +S G++QT +LA+++
Sbjct: 328 GPVLFACQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQY 377
>sp|P18900|COQ1_YEAST Hexaprenyl pyrophosphate synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ1 PE=1
SV=1
Length = 473
Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 111/190 (58%), Gaps = 8/190 (4%)
Query: 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENE----RFAHYLT 56
+AGDF+L A ISRL + +V +S + +LV+GEFMQL + + + H L
Sbjct: 219 LAGDFLLGRATVSISRLHNPEVVELMSNSIANLVEGEFMQLKNTSIDADIDTIENGHKLL 278
Query: 57 KTYRKTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKA 116
K + + + + QG +QL + F +Y+ KTY KTA+LI+ +
Sbjct: 279 PVPSKKLEVKEHDFR--VPSRQQG--LQLSHDQIIETAFEYYIHKTYLKTAALISKSCRC 334
Query: 117 SAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVL 176
+A+L GA + + +++GRNLGI FQLVDD+LDF S +GKP+ ADLKLG+ATAPVL
Sbjct: 335 AAILSGASPAVIDECYDFGRNLGICFQLVDDMLDFTVSGKDLGKPSGADLKLGIATAPVL 394
Query: 177 FACEKSAMLG 186
FA ++ LG
Sbjct: 395 FAWKEDPSLG 404
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1
Length = 449
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 81/110 (73%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C SA+LGGAD + A+ YG+NLG+AFQLVDD+LD+ S +GKP ADL+LGLAT
Sbjct: 308 SCRASALLGGADAATVDAAYLYGKNLGLAFQLVDDMLDYTRSEKELGKPAGADLELGLAT 367
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287
AP+LFA + PEL P++ R+F++ GD +A E V +S G+EQT+ LA+ +
Sbjct: 368 APLLFAWKTMPELGPLVGRKFEKEGDAARARELVLQSNGIEQTRALAQDY 417
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 89/128 (69%), Gaps = 7/128 (5%)
Query: 66 IANCVKAIMTDLVQGEFMQLG--SKETENERFA-----HYLTKTYRKTASLIANCVKASA 118
+ + ++ +LV+GEFMQL +++ +N +++ +YL KTY KTASLI+ +ASA
Sbjct: 254 VVELLATVIANLVEGEFMQLKNTARDEKNPKWSEETLTYYLQKTYLKTASLISKSCRASA 313
Query: 119 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 178
+LGGAD + A+ YG+NLG+AFQLVDD+LD+ S +GKP ADL+LGLATAP+LFA
Sbjct: 314 LLGGADAATVDAAYLYGKNLGLAFQLVDDMLDYTRSEKELGKPAGADLELGLATAPLLFA 373
Query: 179 CEKSAMLG 186
+ LG
Sbjct: 374 WKTMPELG 381
>sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1
PE=3 SV=1
Length = 452
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 81/110 (73%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C +A+L GA + + + ++++G+NLG+ FQ+VDD+LD+ +GKP ADLKLGLAT
Sbjct: 311 SCRAAAVLSGARNPIVDASYKFGKNLGLCFQVVDDMLDYSEGESHLGKPAGADLKLGLAT 370
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287
APVLFA EK+PEL MI R+F PGDVE+A V ++ GL +T+ LA+K+
Sbjct: 371 APVLFAWEKYPELGDMIKRKFDGPGDVERARFLVQQADGLSRTRELAQKY 420
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 102/192 (53%), Gaps = 50/192 (26%)
Query: 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYR 60
+AGDF+L A I+RLR+ +V LS
Sbjct: 237 LAGDFLLGRASVAIARLRNAEVIELLS--------------------------------- 263
Query: 61 KTASLIANCVKAIMTDLVQGEFMQLGSKETENER------FAHYLTKTYRKTASLIANCV 114
+ IAN LV+GEFMQL + +N F +Y+ KTY KTASL++
Sbjct: 264 ---TTIAN--------LVEGEFMQLKNTIVDNSEIANKATFEYYIHKTYLKTASLMSKSC 312
Query: 115 KASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAP 174
+A+A+L GA + + + ++++G+NLG+ FQ+VDD+LD+ +GKP ADLKLGLATAP
Sbjct: 313 RAAAVLSGARNPIVDASYKFGKNLGLCFQVVDDMLDYSEGESHLGKPAGADLKLGLATAP 372
Query: 175 VLFACEKSAMLG 186
VLFA EK LG
Sbjct: 373 VLFAWEKYPELG 384
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 80/107 (74%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C +A+L GAD + ++ E+G+NLG+AFQ+VDDLLD+ S++ GK T+ DL LGLAT
Sbjct: 315 SCRSAAILSGADSNIINISTEFGKNLGLAFQIVDDLLDYTGSAEECGKATSVDLTLGLAT 374
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLA 284
APVL+A ++FP+L +I R+F E GDVE+A V S+G+E+T+ LA
Sbjct: 375 APVLYATQEFPQLEKLIKRKFSEIGDVEEAKRLVALSKGIEKTRNLA 421
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 94/157 (59%), Gaps = 17/157 (10%)
Query: 66 IANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADD 125
+ C+ + +LV+GEFMQ S + F +YL KTY KT SLI N +++A+L GAD
Sbjct: 270 VTECMSTALAELVEGEFMQAKSNGVVS--FDNYLQKTYLKTGSLITNSCRSAAILSGADS 327
Query: 126 KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACE----- 180
+ ++ E+G+NLG+AFQ+VDDLLD+ S++ GK T+ DL LGLATAPVL+A +
Sbjct: 328 NIINISTEFGKNLGLAFQIVDDLLDYTGSAEECGKATSVDLTLGLATAPVLYATQEFPQL 387
Query: 181 ------KSAMLGGADDKLSEVAFEYG----RNLGIAF 207
K + +G ++ VA G RNL I +
Sbjct: 388 EKLIKRKFSEIGDVEEAKRLVALSKGIEKTRNLAIEY 424
>sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa
subsp. japonica GN=SPS1 PE=1 SV=1
Length = 430
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 83/110 (75%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C+ A+L G +S +A+EYGRNLG+AFQL+DD+LDF +S ++GK + D++ G+ T
Sbjct: 283 SCKAVAILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLTDIRHGIIT 342
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287
AP+L+A E+FP+L+ ++ R F P +VE A +++ KS+G+E+TK LAR+H
Sbjct: 343 APMLYAMEEFPQLHEVVDRGFDNPANVELALDYLQKSRGIEKTKELAREH 392
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 81/121 (66%), Gaps = 4/121 (3%)
Query: 61 KTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAML 120
+ SL+A V+ LV GE MQ+ + + +YL KTY KTASLI+N KA A+L
Sbjct: 235 EVVSLMATAVE----HLVTGETMQISTSREQRRSMDYYLQKTYYKTASLISNSCKAVAIL 290
Query: 121 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACE 180
G +S +A+EYGRNLG+AFQL+DD+LDF +S ++GK + D++ G+ TAP+L+A E
Sbjct: 291 AGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLTDIRHGIITAPMLYAME 350
Query: 181 K 181
+
Sbjct: 351 E 351
>sp|O43091|DPS1_SCHPO Decaprenyl-diphosphate synthase subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1
Length = 378
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 74/110 (67%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C+ S +LG ++ A EYGR +G AFQL+DD+LD+ S D +GK ADLKLGLAT
Sbjct: 237 SCKASTILGQCSPTVATAAGEYGRCIGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLAT 296
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287
APVLFA +K+PEL MI+ RF P D+++A V + +EQT A+++
Sbjct: 297 APVLFAWKKYPELGAMIVNRFNHPSDIQRARSLVECTDAIEQTITWAKEY 346
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 98/193 (50%), Gaps = 50/193 (25%)
Query: 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYR 60
+AG+FILA A ++RLR+ VT L+
Sbjct: 163 LAGNFILARASTAMARLRNPQVTELLA--------------------------------- 189
Query: 61 KTASLIANCVKAIMTDLVQGEFMQL------GSKETENERFAHYLTKTYRKTASLIANCV 114
++ DLV+GEF+QL S E + F +Y+ K++ KTASLI+
Sbjct: 190 -----------TVIADLVRGEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLISKSC 238
Query: 115 KASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAP 174
KAS +LG ++ A EYGR +G AFQL+DD+LD+ S D +GK ADLKLGLATAP
Sbjct: 239 KASTILGQCSPTVATAAGEYGRCIGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAP 298
Query: 175 VLFACEKSAMLGG 187
VLFA +K LG
Sbjct: 299 VLFAWKKYPELGA 311
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
Length = 422
Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 113/212 (53%), Gaps = 51/212 (24%)
Query: 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYR 60
+AGDF+L+ AC ++ L++ +V
Sbjct: 207 LAGDFLLSRACGALAALKNTEVV------------------------------------- 229
Query: 61 KTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAML 120
+L+A V+ LV GE M++ S + +Y+ KTY KTASLI+N KA A+L
Sbjct: 230 ---ALLATAVE----HLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVL 282
Query: 121 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACE 180
G +++ +AFEYGRNLG+AFQL+DD+LDF +S ++GK + +D++ G+ TAP+LFA E
Sbjct: 283 TGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAME 342
Query: 181 KSAMLGGADDKLS------EVAFEY-GRNLGI 205
+ L D++ ++A EY G++ GI
Sbjct: 343 EFPQLREVVDQVEKDPRNVDIALEYLGKSKGI 374
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 83/110 (75%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C+ A+L G +++ +AFEYGRNLG+AFQL+DD+LDF +S ++GK + +D++ G+ T
Sbjct: 275 SCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVIT 334
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287
AP+LFA E+FP+L ++ + ++P +V+ A E++ KS+G+++ + LA +H
Sbjct: 335 APILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEH 384
>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=preA PE=3 SV=2
Length = 323
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 87/146 (59%), Gaps = 4/146 (2%)
Query: 66 IANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADD 125
+ + ++ D +GE +Q ++ + YL K+Y KTASLIAN KA+ +L A
Sbjct: 135 VVKLLSEVIRDFAEGEILQSINRFDTDTDLETYLEKSYFKTASLIANSAKAAGVLSDAPR 194
Query: 126 KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAML 185
+ + +EYG++LG+AFQ+VDD+LDF S ++ +GKP +DL G TAP LFA EK +L
Sbjct: 195 DVCDHLYEYGKHLGLAFQIVDDILDFTSPTEVLGKPAGSDLISGNITAPALFAMEKYPLL 254
Query: 186 GGADDKLSEVAFEYGRNLGIAFQLVD 211
G KL E F +L A +LV+
Sbjct: 255 G----KLIEREFAQAGDLEQALELVE 276
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 172 TAPVLFACEKSA-MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 230
TA ++ K+A +L A + + +EYG++LG+AFQ+VDD+LDF S ++ +GKP +D
Sbjct: 175 TASLIANSAKAAGVLSDAPRDVCDHLYEYGKHLGLAFQIVDDILDFTSPTEVLGKPAGSD 234
Query: 231 LKLGLATAPVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLA 284
L G TAP LFA EK+P L +I R F + GD+E+A E V + G+ +++ LA
Sbjct: 235 LISGNITAPALFAMEKYPLLGKLIEREFAQAGDLEQALELVEQGDGIRRSRELA 288
>sp|P31171|PREA_CYAPA Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1
Length = 323
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 68/91 (74%)
Query: 197 FEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMR 256
+ YGR+LG+AFQ+VDD+LDF SS++ +GKP+ +DLK G TAPVLFA E+ EL P+I R
Sbjct: 201 YNYGRHLGLAFQIVDDILDFTSSTEELGKPSCSDLKKGNLTAPVLFALEQNSELIPLIQR 260
Query: 257 RFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287
+F EP D E + V +++ +E+T+ LA +H
Sbjct: 261 QFSEPKDFEYTLQIVEETKAIEKTRELAMEH 291
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 79/120 (65%)
Query: 66 IANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADD 125
+ + ++TD +GE + ++ + YL K++ KTASL+A KA+A+L D
Sbjct: 135 VVKLISKVITDFAEGEIRRGLNQFKVDLTLEEYLEKSFYKTASLLAASSKAAALLSHVDL 194
Query: 126 KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAML 185
++ + YGR+LG+AFQ+VDD+LDF SS++ +GKP+ +DLK G TAPVLFA E+++ L
Sbjct: 195 TVANDLYNYGRHLGLAFQIVDDILDFTSSTEELGKPSCSDLKKGNLTAPVLFALEQNSEL 254
>sp|Q9TLS1|PREA_CYACA Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1
Length = 323
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 75/120 (62%)
Query: 66 IANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADD 125
+ + ++TDL +GE Q ++ YL K++ KTASLIA K+ +L D
Sbjct: 135 VVKAISKVITDLAEGELQQNLTQFNTYYSIIKYLEKSFNKTASLIAASCKSCCLLSDFDQ 194
Query: 126 KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAML 185
L+ + YG+NLG+AFQ++DD+LD SSS A+GK T +DLKLG TAPVLFA K++ L
Sbjct: 195 SLNSKFYNYGKNLGLAFQIIDDILDITSSSTALGKMTTSDLKLGNLTAPVLFALTKNSKL 254
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 70/110 (63%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C+ +L D L+ + YG+NLG+AFQ++DD+LD SSS A+GK T +DLKLG T
Sbjct: 182 SCKSCCLLSDFDQSLNSKFYNYGKNLGLAFQIIDDILDITSSSTALGKMTTSDLKLGNLT 241
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287
APVLFA K +L +I R F E D+ +A + ++ +E++ LA +H
Sbjct: 242 APVLFALTKNSKLFKIIEREFCEKSDISEAINIIKETNAIEESFDLAYEH 291
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 166 LKLGLATAPVLFACEKSA-MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMG 224
LK TA ++ A +SA + G + E +EYGRNLG++FQ+VDD+LDF S++ +G
Sbjct: 218 LKSYYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLG 277
Query: 225 KPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLA 284
KP +DL G TAPV+FA + P+L +I F E + A E VH+S G+++ LA
Sbjct: 278 KPAGSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELA 337
Query: 285 RK 286
R+
Sbjct: 338 RE 339
Score = 97.8 bits (242), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 48/210 (22%)
Query: 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYR 60
+AGDF+ A + ++ L + +V +SQ++ D GE Q
Sbjct: 163 LAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQ-------------------- 202
Query: 61 KTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAML 120
AS + +C D+ YL K+Y KTASLIA +++A+
Sbjct: 203 --ASTLFDC------DIT----------------LDDYLLKSYYKTASLIAASTRSAAIF 238
Query: 121 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACE 180
G + E +EYGRNLG++FQ+VDD+LDF S++ +GKP +DL G TAPV+FA +
Sbjct: 239 SGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQ 298
Query: 181 KSAMLGGADDKLSEVAFEYGRNLGIAFQLV 210
L ++ + F +L A +LV
Sbjct: 299 DEPQL----REIIDSEFSETNSLATAIELV 324
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 97.8 bits (242), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Query: 166 LKLGLATAPVLFACEK-SAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMG 224
LK TA ++ A K +A+ + K++E +++G+NLG++FQ+VDD+LDF S++ +G
Sbjct: 263 LKSYYKTASLVAASTKGAAIFSKVESKVAEQMYQFGKNLGLSFQVVDDILDFTQSTEQLG 322
Query: 225 KPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLA 284
KP A DL G TAPV+FA E P L +I F EPG +E+A E V G+++ + LA
Sbjct: 323 KPAANDLAKGNITAPVIFALENEPRLREIIESEFCEPGSLEEAIEIVRNRGGIKKAQELA 382
Query: 285 RK 286
++
Sbjct: 383 KE 384
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 44/185 (23%)
Query: 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYR 60
+AGDF+ A A ++ L + +V +SQ++ D GE
Sbjct: 208 LAGDFMFAQASWYLANLENLEVIKLISQVIKDFASGEI---------------------- 245
Query: 61 KTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAML 120
K AS + +C + + Y+ K+Y KTASL+A K +A+
Sbjct: 246 KQASSLFDC----------------------DVKLDDYMLKSYYKTASLVAASTKGAAIF 283
Query: 121 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACE 180
+ K++E +++G+NLG++FQ+VDD+LDF S++ +GKP A DL G TAPV+FA E
Sbjct: 284 SKVESKVAEQMYQFGKNLGLSFQVVDDILDFTQSTEQLGKPAANDLAKGNITAPVIFALE 343
Query: 181 KSAML 185
L
Sbjct: 344 NEPRL 348
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 44/180 (24%)
Query: 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYR 60
+AGDF+ A + ++ L + +V +SQ++ D GE
Sbjct: 194 LAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEI---------------------- 231
Query: 61 KTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAML 120
K AS + +C + YL K+Y KTASL+A+ +++A+
Sbjct: 232 KQASTLFDC----------------------DVTLDDYLLKSYYKTASLLASSTRSAAIF 269
Query: 121 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACE 180
G + E +EYGRNLG++FQ+VDD+LDF S++ +GKP +DL G TAPV+FA +
Sbjct: 270 SGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQ 329
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 166 LKLGLATAPVLFACEKSA-MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMG 224
LK TA +L + +SA + G + E +EYGRNLG++FQ+VDD+LDF S++ +G
Sbjct: 249 LKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLG 308
Query: 225 KPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLA 284
KP +DL G TAPV+FA + P+L +I F E + A + VH+S G+ + + LA
Sbjct: 309 KPAGSDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELA 368
Query: 285 RK 286
++
Sbjct: 369 KE 370
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 44/185 (23%)
Query: 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYR 60
+AGDF+ A A ++ L + +V +SQ++ D GE
Sbjct: 197 LAGDFMFAQASWYLANLENLEVIKLISQVIKDFASGEI---------------------- 234
Query: 61 KTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAML 120
K AS + +C + + YL K++ KTASL+A K +A+
Sbjct: 235 KQASSLFDC----------------------DTKLDEYLLKSFYKTASLVAASTKGAAIF 272
Query: 121 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACE 180
+ ++E +E+G+NLG++FQ+VDD+LDF S++ +GKP +DL G TAPV+FA E
Sbjct: 273 SRVEPDVTEQMYEFGKNLGLSFQIVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALE 332
Query: 181 KSAML 185
+ L
Sbjct: 333 REPRL 337
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 172 TAPVLFACEK-SAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 230
TA ++ A K +A+ + ++E +E+G+NLG++FQ+VDD+LDF S++ +GKP +D
Sbjct: 258 TASLVAASTKGAAIFSRVEPDVTEQMYEFGKNLGLSFQIVDDILDFTQSTEQLGKPAGSD 317
Query: 231 LKLGLATAPVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARK 286
L G TAPV+FA E+ P L +I F E G +E+A E V K G+++ + LAR+
Sbjct: 318 LAKGNLTAPVIFALEREPRLREIIESEFCEAGSLEEAIEAVTKGGGIKRAQELARE 373
>sp|Q1XDL8|PREA_PORYE Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1
Length = 323
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 75/126 (59%)
Query: 66 IANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADD 125
+ + ++TD +GE Q + Y+ K++ KTASLIA + +AML G++
Sbjct: 135 VVKAISKVITDFAEGEIRQGLVHFDPSISIDAYIEKSFYKTASLIAASCRGAAMLNGSNH 194
Query: 126 KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAML 185
+++ + YG+++G+AFQ++DD+LD S+ ++GKP ADL G T+P+LF+ + A L
Sbjct: 195 QINNDLYLYGKHMGLAFQIMDDVLDITGSTKSLGKPAGADLINGNLTSPLLFSLTQEASL 254
Query: 186 GGADDK 191
D+
Sbjct: 255 NDLIDR 260
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 68/110 (61%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C +AML G++ +++ + YG+++G+AFQ++DD+LD S+ ++GKP ADL G T
Sbjct: 182 SCRGAAMLNGSNHQINNDLYLYGKHMGLAFQIMDDVLDITGSTKSLGKPAGADLINGNLT 241
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287
+P+LF+ + LN +I R F D+ + +S G+ + K LA++
Sbjct: 242 SPLLFSLTQEASLNDLIDREFCNSTDIASTLFLIKRSGGITKAKDLAKEQ 291
>sp|P51268|PREA_PORPU Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1
Length = 323
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 81/145 (55%), Gaps = 4/145 (2%)
Query: 66 IANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADD 125
+ + ++TD +GE Q + Y+ K++ KTASL+A + +AML +
Sbjct: 135 VVKVITKVITDFAEGEIRQGLVHFDPSISIDDYIEKSFYKTASLVAASCRGAAMLNDLNS 194
Query: 126 KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAML 185
++ + YG+++G+AFQ++DD+LD S+ ++GKP+ AD G TAP+LFA + L
Sbjct: 195 QMHNDLYLYGKHMGLAFQIMDDVLDIAGSTKSLGKPSGADFMNGNLTAPILFALTQEGKL 254
Query: 186 GGADDKLSEVAFEYGRNLGIAFQLV 210
D+L + F R++ +A L+
Sbjct: 255 ----DQLIQREFSDERDISLALFLI 275
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 68/109 (62%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C +AML + ++ + YG+++G+AFQ++DD+LD S+ ++GKP+ AD G T
Sbjct: 182 SCRGAAMLNDLNSQMHNDLYLYGKHMGLAFQIMDDVLDIAGSTKSLGKPSGADFMNGNLT 241
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARK 286
AP+LFA + +L+ +I R F + D+ A + KS G+ + K LA++
Sbjct: 242 APILFALTQEGKLDQLIQREFSDERDISLALFLIKKSGGITKAKDLAKE 290
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 17/152 (11%)
Query: 36 GEFMQLGSKETE---NERFAHYLTKTYRKTASLIANCVKAIMTDLVQGEFMQLGSKETEN 92
G++M GS E NE AH + + +++ C+ GE Q+ K
Sbjct: 140 GDYMLAGSLEMMTRINEPKAHRIL-----SQTIVEVCL---------GEIEQIKDKYNME 185
Query: 93 ERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 152
+ YL + RKTA LIA + A+ GAD+K+ + + +G +G+++Q++DD+LDF
Sbjct: 186 QNLRTYLRRIKRKTALLIAVSCQLGAIASGADEKIHKALYWFGYYVGMSYQIIDDILDFT 245
Query: 153 SSSDAMGKPTAADLKLGLATAPVLFACEKSAM 184
S+ + +GKP DL G T PVL+A + A+
Sbjct: 246 STEEELGKPVGGDLLQGNVTLPVLYALKNPAL 277
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 175 VLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLG 234
+ +C+ A+ GAD+K+ + + +G +G+++Q++DD+LDF S+ + +GKP DL G
Sbjct: 203 IAVSCQLGAIASGADEKIHKALYWFGYYVGMSYQIIDDILDFTSTEEELGKPVGGDLLQG 262
Query: 235 LATAPVLFACEKFPEL 250
T PVL+A K P L
Sbjct: 263 NVTLPVLYAL-KNPAL 277
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 61/105 (58%)
Query: 74 MTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFE 133
+ ++ +GE Q+ K ++ YL + RKTA LIA + A+ GA + + + +
Sbjct: 139 IVEVCRGEIEQIKDKYRFDQPLRTYLRRIRRKTALLIAASCQLGALAAGAPEPIVKRLYW 198
Query: 134 YGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 178
+G +G++FQ+ DD+LDF + + +GKP +DL G T PVL+A
Sbjct: 199 FGHYVGMSFQITDDILDFTGTEEQLGKPAGSDLLQGNVTLPVLYA 243
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+C+ A+ GA + + + + +G +G++FQ+ DD+LDF + + +GKP +DL G T
Sbjct: 178 SCQLGALAAGAPEPIVKRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPAGSDLLQGNVT 237
Query: 238 APVLFA 243
PVL+A
Sbjct: 238 LPVLYA 243
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Query: 75 TDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEY 134
T++ +G+++ + + + + YL +KT+ L A K A+LGGA D+++E EY
Sbjct: 146 TEICEGQWLDMDFETRKKVTESEYLEMVEKKTSVLYAAAAKIGALLGGASDEVAEALSEY 205
Query: 135 GRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAML---GGADDK 191
GR +GI FQ+ DD+LD + + +GK +DL G T V+ A EK L G +
Sbjct: 206 GRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYTLIVINAFEKGVKLDIFGKGEAT 265
Query: 192 LSEV-----------AFEYGRNLGIAF 207
L E + +Y +NL I++
Sbjct: 266 LEETEAAVRTLTECGSLDYVKNLAISY 292
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
A + A+LGGA D+++E EYGR +GI FQ+ DD+LD + + +GK +DL G T
Sbjct: 184 AAKIGALLGGASDEVAEALSEYGRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYT 243
Query: 238 APVLFACEKFPELN 251
V+ A EK +L+
Sbjct: 244 LIVINAFEKGVKLD 257
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 25 TLSQIMTDLVQGEFMQLGSKETENERFAH---------YLTKTYRKTASLIANCVKAIMT 75
T S + D+V M+ G + T N F + T+ ++ A L + + +IM
Sbjct: 84 TASLLHDDVVDESDMRRG-RATANAEFGNAASVLVGDFIYTRAFQLVAQLESLKILSIMA 142
Query: 76 D----LVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVA 131
D L +GE QL + A+Y+ Y KTA L +A+A++ G + +
Sbjct: 143 DATNVLAEGEVQQLMNVNDPETSEANYMRVIYSKTARLFEVAGQAAAIVAGGTEAQEKAL 202
Query: 132 FEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 178
+YGR LG AFQLVDD+LD+ +++ A+GK DL G T P+L A
Sbjct: 203 QDYGRYLGTAFQLVDDVLDYSANTQALGKNVGDDLAEGKPTLPLLHA 249
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
A + +A++ G + + +YGR LG AFQLVDD+LD+ +++ A+GK DL G T
Sbjct: 184 AGQAAAIVAGGTEAQEKALQDYGRYLGTAFQLVDDVLDYSANTQALGKNVGDDLAEGKPT 243
Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFV------HKS 274
P+L A ++R E G +A + V HKS
Sbjct: 244 LPLLHAMRHGNAQQAALIREAIEQGGKREAIDEVLAIMTEHKS 286
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 51 FAHYLTKTYRKTASLIANCVKAI-----MTDLVQGEFMQLGSK-----ETENERFAHYLT 100
F T+T A LI + + + LV G+ + L S+ E F H
Sbjct: 127 FEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHI-- 184
Query: 101 KTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160
KT +L+ V + A+L GA +K Y +N+G+AFQ++DD+LD IS+ + +GK
Sbjct: 185 ---HKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGK 241
Query: 161 PTAADLKLGLATAPVLFACEKS 182
DLK AT P + E+S
Sbjct: 242 SIGKDLKTQKATYPSFWGVEES 263
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
A A+L GA +K Y +N+G+AFQ++DD+LD IS+ + +GK DLK AT
Sbjct: 194 AVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKAT 253
Query: 238 APVLFACEK 246
P + E+
Sbjct: 254 YPSFWGVEE 262
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 56 TKTYRKTASLIANCVKAIMTDLV----QGEFMQLGSKETENERFAHYLTKTYRKTASLIA 111
T+ ++ SL + V +M++ V +GE +QL + + +Y+ Y KTA L
Sbjct: 117 TRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFE 176
Query: 112 NCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 171
+ S +L G + + +YGR LG AFQL+DDLLD+ + + +GK DL G
Sbjct: 177 AAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKP 236
Query: 172 TAPVLFA 178
T P+L A
Sbjct: 237 TLPLLHA 243
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
A + S +L G + + +YGR LG AFQL+DDLLD+ + + +GK DL G T
Sbjct: 178 AAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPT 237
Query: 238 APVLFACEK-FPELNPMIMRRFQEPGD----VEKAFEFVHKSQGLEQTK 281
P+L A PE MI R E G+ +E E ++ LE T+
Sbjct: 238 LPLLHAMHHGTPEQAQMI-RTAIEQGNGRHLLEPVLEAMNACGSLEWTR 285
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 56 TKTYRKTASLIANCVKAIMTDLV----QGEFMQLGSKETENERFAHYLTKTYRKTASLIA 111
T+ ++ SL + V +M++ V +GE +QL + + +Y+ Y KTA L
Sbjct: 117 TRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFE 176
Query: 112 NCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 171
+ S +L G + + +YGR LG AFQL+DDLLD+ + + +GK DL G
Sbjct: 177 AAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKP 236
Query: 172 TAPVLFA 178
T P+L A
Sbjct: 237 TLPLLHA 243
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
A + S +L G + + +YGR LG AFQL+DDLLD+ + + +GK DL G T
Sbjct: 178 AAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPT 237
Query: 238 APVLFACEK-FPELNPMIMRRFQEPGD----VEKAFEFVHKSQGLEQTK 281
P+L A PE MI R E G+ +E E ++ LE T+
Sbjct: 238 LPLLHAMHHGTPEQAQMI-RTAIEQGNGRHLLEPVLEAMNACGSLEWTR 285
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 51 FAHYLTKTYRKTASLIANCV----KAIMTD-LVQGEFMQL---GSKETENER--FAHYLT 100
F H T +++ I V KAI + LV G+ + + GS E + E+ F H
Sbjct: 196 FEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHI-- 253
Query: 101 KTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160
KTA L+ V A+LGG D+ E +Y R++G+ FQ+VDD+LD SS +GK
Sbjct: 254 ---HKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGK 310
Query: 161 PTAADLKLGLATAPVLFACEKS 182
DL T P L EKS
Sbjct: 311 TAGKDLVADKVTYPKLLGIEKS 332
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%)
Query: 183 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
A+LGG D+ E +Y R++G+ FQ+VDD+LD SS +GK DL T P L
Sbjct: 268 AILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLL 327
Query: 243 ACEKFPELNPMIMRRFQE 260
EK E + + QE
Sbjct: 328 GIEKSREFAEKLNKEAQE 345
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 80 GEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAF----EYG 135
GEF Q+ + F YL + RKTA LI +AS LG +L E + ++G
Sbjct: 145 GEFDQMADRFNYPVSFTAYLRRINRKTAILI----EASCHLGALSSQLDEQSTYHIKQFG 200
Query: 136 RNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEV 195
+G+++Q++DD+LD+ S +GKP +D++ G T P++ A + + DDKL V
Sbjct: 201 HCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAI--ANLKEQDDDKLEAV 258
Query: 196 A 196
Sbjct: 259 V 259
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 12/149 (8%)
Query: 150 DFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAF----EYGRNLGI 205
+F +D P + L E S LG +L E + ++G +G+
Sbjct: 146 EFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGM 205
Query: 206 AFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELN----PMIMRRFQEP 261
++Q++DD+LD+ S +GKP +D++ G T P++ A E + +++
Sbjct: 206 SYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTST 265
Query: 262 GDVEKAFEFV---HKSQGLEQTKFLARKH 287
D ++ ++++ K G+E + L+RK+
Sbjct: 266 SD-DEVYQYIVSQVKQYGIEPAELLSRKY 293
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 14/151 (9%)
Query: 63 ASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGG 122
A ++ +CVK + +G+ + +G +E + Y+ Y+KTA+LIA KA A++GG
Sbjct: 136 AVVVDSCVK-----ICEGQALDMGFEERLDVTEEEYMEMIYKKTAALIAAATKAGAIMGG 190
Query: 123 ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182
+ +YGR +G+AFQ+ DD LD +S +++GKP +D+ G T V+ A E++
Sbjct: 191 GSPQEIAALEDYGRCIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALERA 250
Query: 183 ---------AMLGGADDKLSEVAFEYGRNLG 204
++LG D+KL A E G
Sbjct: 251 SEKDRERLISILGSGDEKLVAEAIEIFERYG 281
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 183 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
A++GG + +YGR +G+AFQ+ DD LD +S +++GKP +D+ G T V+
Sbjct: 186 AIMGGGSPQEIAALEDYGRCIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVK 245
Query: 243 ACEKFPELNPMIMRRFQEPGD---VEKAFEFVHKSQGLEQTKFLARKH 287
A E+ E + + GD V +A E + E +A H
Sbjct: 246 ALERASEKDRERLISILGSGDEKLVAEAIEIFERYGATEYAHAVALDH 293
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%)
Query: 105 KTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAA 164
KTA+L+A + A+L GA + E YGR++G+AFQLVDDLL + GKP +
Sbjct: 201 KTAALMAASAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDDLLGIWGRPEITGKPVYS 260
Query: 165 DLKLGLATAPVLFACEKSAMLG 186
DL+ T PV + G
Sbjct: 261 DLRSRKKTLPVTWTVAHGGSAG 282
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+ E A+L GA + E YGR++G+AFQLVDDLL + GKP +DL+ T
Sbjct: 209 SAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKT 268
Query: 238 APVLF 242
PV +
Sbjct: 269 LPVTW 273
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%)
Query: 105 KTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAA 164
KTA+L+A + A+L GA + E YGR++G+AFQLVDDLL + GKP +
Sbjct: 201 KTAALMAASAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDDLLGIWGRPEITGKPVYS 260
Query: 165 DLKLGLATAPVLFACEKSAMLG 186
DL+ T PV + G
Sbjct: 261 DLRSRKKTLPVTWTVAHGGSAG 282
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 178 ACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
+ E A+L GA + E YGR++G+AFQLVDDLL + GKP +DL+ T
Sbjct: 209 SAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKT 268
Query: 238 APVLF 242
PV +
Sbjct: 269 LPVTW 273
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 5/121 (4%)
Query: 63 ASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGG 122
A ++ +CVK + +G+ + +G +E + Y+ Y+KTA+LIA KA A++GG
Sbjct: 136 AVVVDSCVK-----ICEGQALDMGFEERLDVTEDEYMEMIYKKTAALIAAATKAGAIMGG 190
Query: 123 ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182
A ++ E +YG+ +G+AFQ+ DD LD +S +++GKP +D+ G T V+ A E++
Sbjct: 191 ASEREVEALEDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALEEA 250
Query: 183 A 183
+
Sbjct: 251 S 251
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 183 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
A++GGA ++ E +YG+ +G+AFQ+ DD LD +S +++GKP +D+ G T V+
Sbjct: 186 AIMGGASEREVEALEDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVK 245
Query: 243 ACEKFPE 249
A E+ E
Sbjct: 246 ALEEASE 252
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 38 FMQLGSKETENERFA----HYLTKTYRKTASLIANCVKAIMTDLVQGEFMQLGSKE-TEN 92
+ L ++T + FA + KT ++ + V DL GE M+ S E+
Sbjct: 163 LIALAVQKTTSSTFADVPPERILKTVQEMVKAVEGLVAGQQADLA-GEGMRFDSDTGLEH 221
Query: 93 ERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 152
F H KTA+L+ A++GG D+ E Y R +G+ FQ+VDD+LD
Sbjct: 222 LEFIHI-----HKTAALLEAAAVMGAIMGGGSDEEIERLRSYARCIGLMFQVVDDVLDVT 276
Query: 153 SSSDAMGKPTAADLKLGLATAPVLFACEKS 182
SS+ +GK DL G T P L EKS
Sbjct: 277 KSSEELGKTAGKDLIAGKLTYPRLMGVEKS 306
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%)
Query: 183 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
A++GG D+ E Y R +G+ FQ+VDD+LD SS+ +GK DL G T P L
Sbjct: 242 AIMGGGSDEEIERLRSYARCIGLMFQVVDDVLDVTKSSEELGKTAGKDLIAGKLTYPRLM 301
Query: 243 ACEKFPE 249
EK E
Sbjct: 302 GVEKSKE 308
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 98 YLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDA 157
YL RKTA+L + A++ GA+D + ++G NLGIAFQ+VDD+L +
Sbjct: 168 YLDMISRKTAALFSASSSIGALIAGANDNDVRLMSDFGTNLGIAFQIVDDILGLTADEKE 227
Query: 158 MGKPTAADLKLGLATAPVLFACE----------------KSAM---LGGADDKLSEVAFE 198
+GKP +D++ G T V+ E KSA L + D + + + +
Sbjct: 228 LGKPVFSDIREGKKTILVIKTLELCKEDEKKIVLKALGNKSASKEELMSSADIIKKYSLD 287
Query: 199 YGRNLGIAF--QLVDDLLDFISSSDAMGK 225
Y NL + +D L S SD GK
Sbjct: 288 YAYNLAEKYYKNAIDSLNQVSSKSDIPGK 316
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 176 LFACEKS--AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKL 233
LF+ S A++ GA+D + ++G NLGIAFQ+VDD+L + +GKP +D++
Sbjct: 179 LFSASSSIGALIAGANDNDVRLMSDFGTNLGIAFQIVDDILGLTADEKELGKPVFSDIRE 238
Query: 234 GLATAPVLFACE 245
G T V+ E
Sbjct: 239 GKKTILVIKTLE 250
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 12/122 (9%)
Query: 175 VLFACEKSAMLGG----ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 230
+LF+C SA LGG A+D + + EYG NLGI+FQ+VDD+L I +GKP +D
Sbjct: 180 MLFSC--SAALGGIINKANDDVVKKLTEYGLNLGISFQIVDDILGIIGDEKELGKPIYSD 237
Query: 231 LKLGLATAPVLFACEKFPELNPMIM-----RRFQEPGDVEKAFEFVHKSQGLEQTKFLAR 285
++ G T V+ + E I+ + + D+E+A E + K L+ LA+
Sbjct: 238 IREGKKTILVIKTLSEATEDEKKILVSTLGNKEAKKEDLERASEIIRK-HSLQYAYDLAK 296
Query: 286 KH 287
K+
Sbjct: 297 KY 298
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Query: 33 LVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQGEFMQLGSKETEN 92
++ G+++ + E NE T+ K S+ ++ I +G+ M + + +
Sbjct: 109 ILAGDYLHAKAFEALNEALKGLDGNTFYKAFSIFITSIEIIS----EGQAMDMSFENRLD 164
Query: 93 ERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 152
Y+ KTA L + ++ A+D + + EYG NLGI+FQ+VDD+L I
Sbjct: 165 VTEEEYIQMIKGKTAMLFSCSAALGGIINKANDDVVKKLTEYGLNLGISFQIVDDILGII 224
Query: 153 SSSDAMGKPTAADLKLGLATAPVL 176
+GKP +D++ G T V+
Sbjct: 225 GDEKELGKPIYSDIREGKKTILVI 248
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 104 RKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTA 163
KT ++ V A A++GGAD + + E+ +LG+AFQ+ DD+LD + + +GKP
Sbjct: 182 HKTGKMLQYSVHAGALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVG 241
Query: 164 ADLKLGLATAPVLFACEKSAMLGGADDKLS---EVAFEYGRN 202
+D AT P L + L GA +KL+ E A + RN
Sbjct: 242 SDQSNNKATYPALLS------LAGAKEKLAFHIEAAQRHLRN 277
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
++ A++GGAD + + E+ +LG+AFQ+ DD+LD + + +GKP +D A
Sbjct: 190 YSVHAGALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKA 249
Query: 237 TAPVLFA 243
T P L +
Sbjct: 250 TYPALLS 256
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 51 FAHYLTKTYRKTASLIANCV----KAIMTD-LVQGEFMQLGSKETENERFAHYLTKTYRK 105
F H T T ++ I V K I ++ LV G+ + + S+ + H K
Sbjct: 183 FEHIATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHK 242
Query: 106 TASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 165
TA+L+ V A++GGA+D+ ++ R +G+ FQ+VDD+LD SS +GK D
Sbjct: 243 TAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKD 302
Query: 166 LKLGLATAPVLFACEKS 182
L T P L +KS
Sbjct: 303 LVADKVTYPKLLGIDKS 319
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 183 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
A++GGA+D+ ++ R +G+ FQ+VDD+LD SS +GK DL T P L
Sbjct: 255 AIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLL 314
Query: 243 ACEKFPELNPMIMRRFQE 260
+K E + R QE
Sbjct: 315 GIDKSREFAEKLNREAQE 332
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 51 FAHYLTKTYRKTASLIANCV----KAIMTD-LVQGEFMQL-----GSKETENERFAHYLT 100
F H + T T S I V K+I T+ LV G+ + S E F H
Sbjct: 195 FEHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHV-- 252
Query: 101 KTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160
KTA+L+ + V A+LGG + E + R +G+ FQ+VDD+LD SS+ +GK
Sbjct: 253 ---HKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGK 309
Query: 161 PTAADLKLGLATAPVLFACEKS 182
DL + T P L EK+
Sbjct: 310 TAGKDLVVDKTTYPKLLGLEKA 331
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 183 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
A+LGG + E + R +G+ FQ+VDD+LD SS+ +GK DL + T P L
Sbjct: 267 AILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLL 326
Query: 243 ACEKFPELNPMIMRRFQE 260
EK E + R ++
Sbjct: 327 GLEKAKEFAAELNREAKQ 344
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 45/180 (25%)
Query: 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYR 60
+AGD + A A + +SR++DN + AH + K
Sbjct: 113 LAGDLLYAKAFEAVSRIKDN-----------------------------KKAHEVLKILS 143
Query: 61 KTASLIANCVKAIMTDLVQGEFMQLGSKETEN--ERFAHYLTKTYRKTASLIANCVKASA 118
K CV ++ +G+ M + E EN YL +KT +L+ V A
Sbjct: 144 KA------CV-----EVCEGQAMDM---EFENYYPTMEEYLDMIRKKTGALLEASVGIGA 189
Query: 119 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 178
++ +++ E EY + +G+ FQ+ DD+LD I +GKP +D++ G T V+ A
Sbjct: 190 VMADCNEEEREALKEYAKRIGLTFQIQDDVLDLIGDQKKLGKPVGSDIREGKKTIIVIHA 249
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 156 DAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLD 215
D + K T A L+ + V+ C + E EY + +G+ FQ+ DD+LD
Sbjct: 171 DMIRKKTGALLEASVGIGAVMADCNEEE---------REALKEYAKRIGLTFQIQDDVLD 221
Query: 216 FISSSDAMGKPTAADLKLGLATAPVLFACEKFPE 249
I +GKP +D++ G T V+ A + E
Sbjct: 222 LIGDQKKLGKPVGSDIREGKKTIIVIHALKTLDE 255
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 66 IANCVKAIMTD-LVQGEFMQLGSK--ETENERFAHYLTKTYRKTASLIANCVKASAMLGG 122
+ KAI T+ LV G+ + + S+ + N H KTA+L+ ++GG
Sbjct: 209 VGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG 268
Query: 123 ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182
D+ E ++ R +G+ FQ+VDD+LD SS +GK DL T P L EKS
Sbjct: 269 GSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKS 328
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 183 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
++GG D+ E ++ R +G+ FQ+VDD+LD SS +GK DL T P L
Sbjct: 264 GIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLM 323
Query: 243 ACEKFPE 249
EK E
Sbjct: 324 GLEKSRE 330
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%)
Query: 75 TDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEY 134
T++ +G+ + + + + YL KTA L A A+L G+DD+ E Y
Sbjct: 163 TEICEGQALDVDFENRSDVTTEEYLEMVEFKTAVLYAAAASIPAILLGSDDETVEALHGY 222
Query: 135 GRNLGIAFQLVDDLLDFISSSDAMGKPTAADL 166
G ++G AFQ+ DDLLD + SD +GK +DL
Sbjct: 223 GLDIGRAFQIQDDLLDLTAPSDELGKQRGSDL 254
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 175 VLFACEKS--AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLK 232
VL+A S A+L G+DD+ E YG ++G AFQ+ DDLLD + SD +GK +DL
Sbjct: 196 VLYAAAASIPAILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTAPSDELGKQRGSDLV 255
Query: 233 LGLATAPVLFACEKFPELNPMIMRRFQEPGDVE 265
T L A ++ ++ ++ +P D E
Sbjct: 256 ENKRTVITLHARDQGIDVEGLVS---DDPSDAE 285
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 77 LVQGEFMQLGSKETE-NERFAHYLTKTY-RKTASLIANCVKASAMLGGADDKLSEVAFEY 134
LV G+ M + S+ + NE +L + KTA L+ A++GG D+ E ++
Sbjct: 231 LVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKF 290
Query: 135 GRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182
R +G+ FQ+VDD+LD SS+ +GK D G T P L EKS
Sbjct: 291 ARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKS 338
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 170 LATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAA 229
L TA VL A++GG D+ E ++ R +G+ FQ+VDD+LD SS+ +GK
Sbjct: 266 LETAAVL-----GAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGK 320
Query: 230 DLKLGLATAPVLFACEKFPE 249
D G T P L EK E
Sbjct: 321 DQLAGKLTYPKLIGLEKSKE 340
>sp|Q8PYS1|GFPS_METMA Geranylfarnesyl diphosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0789 PE=1 SV=1
Length = 295
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 76 DLVQGEFMQLGSKETENERFAH--YLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFE 133
D+ +GE + L + E+E F Y Y+KTASL A A GGA+++L+E
Sbjct: 146 DMAEGEVLDL---KLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSH 202
Query: 134 YGRNLGIAFQLVDDLLDFI 152
+G LG A+Q+VDD+L+F+
Sbjct: 203 FGNALGTAYQIVDDILEFL 221
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 176 LFACEKS--AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 217
LFA S A GGA+++L+E +G LG A+Q+VDD+L+F+
Sbjct: 178 LFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFL 221
>sp|P54383|ISPA_BACSU Farnesyl diphosphate synthase OS=Bacillus subtilis (strain 168)
GN=ispA PE=3 SV=2
Length = 296
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 11/122 (9%)
Query: 104 RKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTA 163
RKTA L+ CV A A+L A ++ E + ++GI FQ+ DD+LD S + +GK
Sbjct: 181 RKTAKLLGFCVIAGAILADAPEEDIETLRTFSSHIGIGFQIRDDILDLEGSEEKIGKRVG 240
Query: 164 ADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNL--GIAFQ--LVDDLLDFISS 219
+D +T P L + E GA KL +V + + L G++ Q L+ +L D I++
Sbjct: 241 SDTTNDKSTYPSLLSLE------GAKHKL-DVHIKEAKRLIGGLSLQKDLLYELCDLIAA 293
Query: 220 SD 221
D
Sbjct: 294 RD 295
Score = 38.1 bits (87), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 172 TAPVL-FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 230
TA +L F A+L A ++ E + ++GI FQ+ DD+LD S + +GK +D
Sbjct: 183 TAKLLGFCVIAGAILADAPEEDIETLRTFSSHIGIGFQIRDDILDLEGSEEKIGKRVGSD 242
Query: 231 LKLGLATAPVLFACE 245
+T P L + E
Sbjct: 243 TTNDKSTYPSLLSLE 257
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 66 IANCVKAIMTD-LVQGEFMQLGSKET-------ENERFAHYLTKTYRKTASLIANCVKAS 117
+ +AI T LV G+ + L S+ E F H KTA+L+
Sbjct: 204 VVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIHL-----HKTAALLEAAAVIG 258
Query: 118 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 177
A++GG ++ E +Y R +G+ FQ+VDD+LD S++ +GK D+ G T P L
Sbjct: 259 AIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLI 318
Query: 178 ACEKSAMLGGADDKLSEVAFE 198
E+S + +KLS A E
Sbjct: 319 GLERSREVA---EKLSREAEE 336
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 123 ADDKLSEVAFEYGRNLG----IAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 178
A +++ E R +G +A Q+VD + ++ D +G + L A + A
Sbjct: 196 ASERMIRAVVELARAIGTKGLVAGQVVDLSSERLNPHD-VGLERLEFIHLHKTAALLEAA 254
Query: 179 CEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATA 238
A++GG ++ E +Y R +G+ FQ+VDD+LD S++ +GK D+ G T
Sbjct: 255 AVIGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTY 314
Query: 239 PVLFACEKFPELNPMIMRRFQE 260
P L E+ E+ + R +E
Sbjct: 315 PRLIGLERSREVAEKLSREAEE 336
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 76 DLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYG 135
++ +GE +QL ++ + YL + KT+ L + +A+L G + E +
Sbjct: 145 EIAEGEVLQLQAQHQPDTTEDIYLQIIHGKTSRLFELATEGAAILAGKPE-YREPLRRFA 203
Query: 136 RNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182
+ G AFQ++DD+LD+ S +D +GK DL G T P++ A + +
Sbjct: 204 GHFGNAFQIIDDILDYTSDADTLGKNIGDDLMEGKPTLPLIAAMQNT 250
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 177 FACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA 236
A E +A+L G + E + + G AFQ++DD+LD+ S +D +GK DL G
Sbjct: 181 LATEGAAILAGKPE-YREPLRRFAGHFGNAFQIIDDILDYTSDADTLGKNIGDDLMEGKP 239
Query: 237 TAPVLFACEKFPELNPMIMRRFQEPG---DVEKAFEFVHKSQGLE 278
T P++ A + ++RR G +E+ V S L+
Sbjct: 240 TLPLIAAMQNTQGEQRDLIRRSIATGGTSQLEQVIAIVQNSGALD 284
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 51 FAHYLTKTYRKTASL---IANCVKAIMTD-LVQGEFMQLGSKETENE-------RFAHYL 99
F H T T A + I KAI + LV G+ + L S + F H
Sbjct: 172 FEHLATSTAVSPARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHV- 230
Query: 100 TKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMG 159
KTA L+ A++GG D+ E + R +G+ FQ+VDD+LD SS+ +G
Sbjct: 231 ----HKTAVLLEAATVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDILDVTKSSEELG 286
Query: 160 KPTAADLKLGLATAPVLFACEKS 182
K DL T P L EKS
Sbjct: 287 KTAGKDLIADKLTYPKLMGLEKS 309
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 183 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
A++GG D+ E + R +G+ FQ+VDD+LD SS+ +GK DL T P L
Sbjct: 245 AIVGGGSDEEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLIADKLTYPKLM 304
Query: 243 ACEK 246
EK
Sbjct: 305 GLEK 308
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 66 IANCVKAIMTD-LVQGEFMQLGSK--ETENERFAHYLTKTYRKTASLIANCVKASAMLGG 122
+ KAI T+ LV G+ + + S+ + + H KTA+L+ A++GG
Sbjct: 214 VGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGG 273
Query: 123 ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182
D E ++ R +G+ FQ+VDD+LD SS +GK DL T P + EKS
Sbjct: 274 GSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKS 333
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 183 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
A++GG D E ++ R +G+ FQ+VDD+LD SS +GK DL T P +
Sbjct: 269 AIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIM 328
Query: 243 ACEKFPELNPMIMRRFQE 260
EK E + R ++
Sbjct: 329 GLEKSREFAEKLNREARD 346
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 75 TDLVQGEFMQLGSKETENERFA--HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAF 132
T LV G+ + L S+ ++ H KTA+L+ ++GG ++ E
Sbjct: 213 TGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLR 272
Query: 133 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182
+Y R +G+ FQ+VDD+LD S++ +GK D+ G T P L E+S
Sbjct: 273 KYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERS 322
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 123 ADDKLSEVAFEYGRNLGIAFQLVDDLLDFIS---SSDAMGKPTAADLKLGLATAPVLFAC 179
A +++ E R +G + ++D S + D +G + L A + A
Sbjct: 195 APERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAA 254
Query: 180 EKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAP 239
++GG ++ E +Y R +G+ FQ+VDD+LD S++ +GK D+ G T P
Sbjct: 255 VLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYP 314
Query: 240 VLFACEKFPELNPMIMRRFQE 260
L E+ E+ + R +E
Sbjct: 315 RLIGLERSKEVAEKLRREAEE 335
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 104 RKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTA 163
KT SL+ A++GG +K E + R +G+ FQ+VDD+LD SS+ +GK
Sbjct: 256 HKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAG 315
Query: 164 ADLKLGLATAPVLFACEKS 182
D G T P + EKS
Sbjct: 316 KDKVAGKLTYPKVIGVEKS 334
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 183 AMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242
A++GG +K E + R +G+ FQ+VDD+LD SS+ +GK D G T P +
Sbjct: 270 AVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVI 329
Query: 243 ACEKFPELNPMIMRRFQE 260
EK E + R +E
Sbjct: 330 GVEKSKEFVEKLKRDARE 347
>sp|Q9UWR6|GFPS_AERPX Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs
PE=1 SV=1
Length = 318
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%)
Query: 79 QGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNL 138
+G+ + +ET + A YL KT +LI + A+ GA ++ ++ E G N
Sbjct: 140 RGQAYDMLFEETWDVDVADYLNMVRLKTGALIEAAARIGAVAAGAGSEIEKMMGEVGMNA 199
Query: 139 GIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182
GIAFQ+ DD+L I GKP DL+ G T V++A +K+
Sbjct: 200 GIAFQIRDDILGVIGDPKVTGKPVYNDLRRGKKTLLVIYAVKKA 243
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 198 EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEK 246
E G N GIAFQ+ DD+L I GKP DL+ G T V++A +K
Sbjct: 194 EVGMNAGIAFQIRDDILGVIGDPKVTGKPVYNDLRRGKKTLLVIYAVKK 242
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,325,117
Number of Sequences: 539616
Number of extensions: 3689067
Number of successful extensions: 9549
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 9358
Number of HSP's gapped (non-prelim): 187
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)