Query psy17022
Match_columns 287
No_of_seqs 222 out of 2126
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 19:47:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3apz_A Geranyl diphosphate syn 100.0 9.6E-35 3.3E-39 269.1 18.1 178 1-287 133-310 (348)
2 3oyr_A Trans-isoprenyl diphosp 100.0 5.2E-35 1.8E-39 269.8 15.9 178 1-287 131-313 (345)
3 3mzv_A Decaprenyl diphosphate 100.0 1.6E-34 5.4E-39 266.4 16.6 178 1-287 119-301 (341)
4 3nf2_A Putative polyprenyl syn 100.0 2.1E-34 7.2E-39 266.5 17.4 178 1-287 120-311 (352)
5 3rmg_A Octaprenyl-diphosphate 100.0 4.6E-34 1.6E-38 262.7 17.5 177 1-287 113-294 (334)
6 3pko_A Geranylgeranyl pyrophos 100.0 5.1E-34 1.8E-38 262.5 16.9 178 1-287 122-302 (334)
7 3lmd_A Geranylgeranyl pyrophos 100.0 4.1E-34 1.4E-38 264.9 14.6 176 1-287 141-320 (360)
8 3tc1_A Octaprenyl pyrophosphat 100.0 2.4E-33 8.1E-38 255.9 16.8 174 1-287 103-279 (315)
9 4dhd_A Polyprenyl synthetase; 100.0 4.2E-33 1.4E-37 258.5 17.4 189 1-287 111-307 (358)
10 1wy0_A Geranylgeranyl pyrophos 100.0 2.6E-33 8.9E-38 259.0 15.6 178 1-287 112-310 (342)
11 3lk5_A Geranylgeranyl pyrophos 100.0 4.1E-33 1.4E-37 260.2 15.2 182 1-287 150-340 (380)
12 3aqb_B Component B of hexapren 100.0 7.2E-33 2.5E-37 254.3 15.2 177 1-287 110-293 (325)
13 1v4e_A Octoprenyl-diphosphate 100.0 7.2E-33 2.5E-37 251.2 14.2 168 1-287 107-274 (299)
14 2e8v_A Geranylgeranyl pyrophos 100.0 6.8E-33 2.3E-37 255.8 13.6 180 1-287 106-300 (340)
15 1wmw_A Geranylgeranyl diphosph 100.0 1E-32 3.6E-37 253.7 13.5 176 1-287 105-294 (330)
16 2q80_A Geranylgeranyl pyrophos 100.0 3E-32 1E-36 247.4 14.3 175 1-287 91-268 (301)
17 1yhl_A Farnesyl pyrophosphate 100.0 5.9E-31 2E-35 245.0 13.6 190 1-287 126-328 (362)
18 2qis_A Farnesyl pyrophosphate 100.0 8E-30 2.7E-34 237.9 14.2 182 1-287 151-342 (374)
19 1rtr_A Geranyltranstransferase 100.0 6.2E-30 2.1E-34 232.1 12.8 147 75-225 148-296 (301)
20 3p8l_A Geranyltranstransferase 100.0 1.5E-29 5.2E-34 229.2 15.0 141 74-218 155-300 (302)
21 3lsn_A Geranyltranstransferase 100.0 1.3E-29 4.3E-34 230.1 13.7 147 75-225 152-299 (304)
22 4f62_A Geranyltranstransferase 100.0 3.5E-29 1.2E-33 228.0 16.2 143 74-220 150-293 (317)
23 3ts7_A Geranyltranstransferase 100.0 2.7E-29 9.1E-34 229.4 14.9 144 74-221 157-301 (324)
24 1uby_A FPS, farnesyl diphospha 100.0 3.4E-29 1.2E-33 233.0 14.7 181 2-287 145-335 (367)
25 3uca_A Geranyltranstransferase 100.0 3.2E-29 1.1E-33 228.8 13.7 144 74-220 179-322 (324)
26 2h8o_A Geranyltranstransferase 100.0 2.6E-29 8.9E-34 230.7 13.0 141 75-219 192-332 (335)
27 3dyh_A Farnesyl pyrophosphate 100.0 4.2E-29 1.4E-33 233.9 14.1 188 1-287 152-356 (390)
28 3p8r_A Geranyltranstransferase 100.0 3.2E-29 1.1E-33 227.3 12.9 142 74-219 157-299 (302)
29 3lom_A Geranyltranstransferase 100.0 3.3E-29 1.1E-33 228.1 13.0 145 74-222 157-303 (313)
30 3pde_A Farnesyl-diphosphate sy 100.0 3.6E-29 1.2E-33 227.2 12.4 144 1-183 118-262 (309)
31 2ihi_A Pyrophosphate synthase; 100.0 5.9E-29 2E-33 233.0 13.9 192 1-287 153-364 (395)
32 3m0g_A Farnesyl diphosphate sy 100.0 4.6E-29 1.6E-33 225.7 12.6 177 1-225 109-292 (297)
33 2her_A Fragment, farnesyl pyro 100.0 2.9E-29 1E-33 232.6 9.3 173 1-287 141-324 (368)
34 1rqj_A Geranyltranstransferase 100.0 7.4E-29 2.5E-33 225.0 11.6 108 74-182 151-259 (299)
35 3mav_A Farnesyl pyrophosphate 100.0 1.3E-28 4.5E-33 231.5 12.8 193 1-287 151-364 (395)
36 3llw_A Geranyltranstransferase 100.0 5.3E-28 1.8E-32 219.9 14.2 142 74-221 158-304 (311)
37 2ftz_A Geranyltranstransferase 100.0 5.1E-28 1.7E-32 217.6 13.1 134 1-183 114-248 (284)
38 3npk_A Geranyltranstransferase 99.9 2.4E-27 8.2E-32 213.8 14.5 138 74-217 144-282 (291)
39 2q58_A Fragment, farnesyl pyro 99.9 2.1E-26 7.1E-31 214.5 12.5 166 1-282 141-319 (368)
40 3ipi_A Geranyltranstransferase 99.9 1.4E-25 4.8E-30 202.7 13.7 129 1-181 108-236 (295)
41 2j1p_A Geranylgeranyl pyrophos 99.9 9.7E-24 3.3E-28 190.8 15.4 128 74-218 159-289 (293)
42 2azj_A Geranylgeranyl pyrophos 99.9 3.7E-23 1.3E-27 186.4 13.1 117 1-177 115-232 (289)
43 4fp4_A Polyprenyl synthetase; 99.9 1.3E-22 4.6E-27 181.7 9.6 138 1-220 114-251 (285)
44 3p8l_A Geranyltranstransferase 99.8 1.6E-19 5.4E-24 163.5 12.4 144 110-254 125-269 (302)
45 3pde_A Farnesyl-diphosphate sy 99.8 9.4E-20 3.2E-24 165.3 10.1 128 127-254 141-268 (309)
46 3kra_B Geranyl diphosphate syn 99.8 2.1E-19 7.2E-24 160.8 11.7 111 1-148 107-221 (274)
47 4f62_A Geranyltranstransferase 99.8 2.1E-19 7.3E-24 163.5 11.4 142 110-251 119-262 (317)
48 3ts7_A Geranyltranstransferase 99.8 2.4E-19 8.1E-24 163.6 11.2 144 109-252 123-270 (324)
49 3lsn_A Geranyltranstransferase 99.8 2.6E-19 8.8E-24 162.3 11.1 143 110-252 118-264 (304)
50 3uca_A Geranyltranstransferase 99.8 1.4E-19 4.6E-24 165.3 9.2 125 128-252 167-292 (324)
51 1rtr_A Geranyltranstransferase 99.8 5E-19 1.7E-23 160.4 11.4 140 110-249 116-256 (301)
52 3qkc_B Geranyl diphosphate syn 99.8 9.7E-19 3.3E-23 156.5 11.2 107 1-150 110-224 (273)
53 3npk_A Geranyltranstransferase 99.8 1.6E-18 5.3E-23 156.2 12.2 142 110-254 114-256 (291)
54 3p8r_A Geranyltranstransferase 99.8 7.5E-19 2.6E-23 159.2 9.7 143 110-252 124-270 (302)
55 3lom_A Geranyltranstransferase 99.8 9.1E-19 3.1E-23 159.3 10.1 143 109-252 123-271 (313)
56 2h8o_A Geranyltranstransferase 99.8 7.7E-19 2.6E-23 161.1 9.5 142 110-251 159-302 (335)
57 1rqj_A Geranyltranstransferase 99.8 1.3E-18 4.4E-23 157.7 10.2 140 110-249 118-261 (299)
58 3llw_A Geranyltranstransferase 99.7 8E-18 2.8E-22 152.9 12.2 140 110-252 128-269 (311)
59 3m0g_A Farnesyl diphosphate sy 99.7 1.1E-18 3.9E-23 157.6 5.1 121 127-250 133-255 (297)
60 2ftz_A Geranyltranstransferase 99.7 2.9E-17 9.9E-22 147.5 9.1 87 161-252 166-252 (284)
61 3ipi_A Geranyltranstransferase 99.6 4.6E-16 1.6E-20 140.4 8.3 79 163-247 159-237 (295)
62 3mav_A Farnesyl pyrophosphate 99.5 1.2E-13 4.1E-18 129.6 10.7 93 47-182 228-321 (395)
63 2azj_A Geranylgeranyl pyrophos 99.4 8.6E-13 2.9E-17 118.7 10.6 73 162-242 160-232 (289)
64 2q80_A Geranylgeranyl pyrophos 99.4 1.8E-13 6.1E-18 123.9 5.8 84 50-181 141-224 (301)
65 2j1p_A Geranylgeranyl pyrophos 99.4 1E-12 3.6E-17 118.5 10.6 129 110-252 126-260 (293)
66 4fp4_A Polyprenyl synthetase; 99.3 7.9E-13 2.7E-17 118.3 2.5 67 166-234 160-226 (285)
67 2q58_A Fragment, farnesyl pyro 99.3 4E-12 1.4E-16 118.1 6.6 101 34-182 181-285 (368)
68 1v4e_A Octoprenyl-diphosphate 98.9 1.1E-09 3.6E-14 99.0 6.1 50 163-215 159-208 (299)
69 3nf2_A Putative polyprenyl syn 98.8 3.6E-09 1.2E-13 97.6 7.0 55 162-216 175-229 (352)
70 3aqb_B Component B of hexapren 98.8 4.7E-09 1.6E-13 95.9 7.6 55 162-216 162-216 (325)
71 3apz_A Geranyl diphosphate syn 98.8 5.2E-09 1.8E-13 96.4 6.7 54 163-216 186-239 (348)
72 3mzv_A Decaprenyl diphosphate 98.8 6.1E-09 2.1E-13 95.7 6.6 56 162-217 171-226 (341)
73 3oyr_A Trans-isoprenyl diphosp 98.8 5.3E-09 1.8E-13 96.2 6.1 56 162-217 183-238 (345)
74 3rmg_A Octaprenyl-diphosphate 98.8 6.4E-09 2.2E-13 95.3 6.6 56 161-216 164-219 (334)
75 3lmd_A Geranylgeranyl pyrophos 98.8 7E-09 2.4E-13 95.8 6.7 55 163-217 192-246 (360)
76 4dhd_A Polyprenyl synthetase; 98.8 8.3E-09 2.8E-13 95.4 6.9 54 163-216 177-230 (358)
77 1uby_A FPS, farnesyl diphospha 98.7 9.7E-09 3.3E-13 95.2 6.5 55 162-216 206-262 (367)
78 3pko_A Geranylgeranyl pyrophos 98.7 1.9E-08 6.4E-13 92.2 7.2 53 165-217 178-230 (334)
79 1wy0_A Geranylgeranyl pyrophos 98.7 4.8E-08 1.6E-12 89.8 9.3 58 160-217 167-224 (342)
80 3lk5_A Geranylgeranyl pyrophos 98.7 7E-08 2.4E-12 89.8 9.9 119 20-182 174-293 (380)
81 3tc1_A Octaprenyl pyrophosphat 98.6 2.3E-08 7.9E-13 90.8 5.7 52 163-217 155-206 (315)
82 1wmw_A Geranylgeranyl diphosph 98.6 2.4E-08 8.1E-13 91.4 5.3 52 163-216 165-217 (330)
83 3dyh_A Farnesyl pyrophosphate 98.6 4.1E-08 1.4E-12 91.7 6.7 54 162-215 227-282 (390)
84 3kra_B Geranyl diphosphate syn 98.6 1.1E-07 3.7E-12 84.8 8.9 105 109-213 112-221 (274)
85 2qis_A Farnesyl pyrophosphate 98.6 1.9E-07 6.4E-12 86.8 9.8 58 159-216 210-269 (374)
86 3qkc_B Geranyl diphosphate syn 98.6 1.2E-07 4.2E-12 84.3 7.8 105 109-214 115-223 (273)
87 2her_A Fragment, farnesyl pyro 98.6 4.4E-08 1.5E-12 90.6 4.9 51 163-213 203-256 (368)
88 1yhl_A Farnesyl pyrophosphate 98.5 3E-07 1E-11 85.1 9.3 56 161-216 198-255 (362)
89 2e8v_A Geranylgeranyl pyrophos 98.4 5.3E-07 1.8E-11 82.7 6.7 55 161-216 165-219 (340)
90 2ihi_A Pyrophosphate synthase; 98.3 1.2E-06 4E-11 81.9 9.0 57 161-217 233-292 (395)
91 3aqb_A Component A of hexapren 87.1 0.42 1.5E-05 37.3 3.1 43 1-43 74-116 (147)
92 3vj8_A Squalene synthase; farn 77.6 14 0.00048 33.2 9.9 93 69-176 115-207 (343)
93 3acx_A Dehydrosqualene synthas 72.1 26 0.0009 30.4 10.1 72 72-151 108-179 (293)
94 4hd1_A Squalene synthase HPNC; 61.8 40 0.0014 29.3 9.1 69 74-151 106-174 (294)
95 3kb9_A EPI-isozizaene synthase 44.5 1.3E+02 0.0044 27.0 9.8 65 91-155 204-270 (382)
96 1ps1_A Pentalenene synthase; a 37.6 2E+02 0.0068 24.8 11.4 80 76-155 145-228 (337)
97 3bny_A Aristolochene synthase; 29.9 2.6E+02 0.0089 23.8 13.4 65 91-155 164-228 (320)
98 1di1_A Aristolochene synthase; 29.4 2.5E+02 0.0087 23.5 14.9 65 91-155 150-214 (300)
No 1
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=9.6e-35 Score=269.15 Aligned_cols=178 Identities=42% Similarity=0.740 Sum_probs=152.4
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQG 80 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~G 80 (287)
|+||||+++||+++++++++++++.+++++..+++||.+++.+..+
T Consensus 133 l~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~---------------------------------- 178 (348)
T 3apz_A 133 LAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTE---------------------------------- 178 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCHH----------------------------------
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccC----------------------------------
Confidence 5899999999999999998999999888888888888887755322
Q ss_pred hhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCc
Q psy17022 81 EFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160 (287)
Q Consensus 81 Q~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk 160 (287)
..+++++|++|+.+|||+||.+||++|++++|.+++..+.+.+||.++|++|||+||++|++++
T Consensus 179 ----------~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd------ 242 (348)
T 3apz_A 179 ----------QRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGT------ 242 (348)
T ss_dssp ----------HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred ----------CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------
Confidence 2467889999999999999999999999999998777777777777777777777777666554
Q ss_pred cchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHH
Q psy17022 161 PTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPV 240 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~ 240 (287)
+..+|||+|+|+++||+|||+
T Consensus 243 -----------------------------------------------------------~~~~GK~~g~Dl~egK~Tlp~ 263 (348)
T 3apz_A 243 -----------------------------------------------------------SASLGKGSLSDIRHGVITAPI 263 (348)
T ss_dssp -----------------------------------------------------------TTCTTCSCCHHHHTTCCCHHH
T ss_pred -----------------------------------------------------------hhhcCCcchhhHhCCChhHHH
Confidence 456788889999999999999
Q ss_pred HHhhhhCccchHHHHhhcCCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 241 LFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 241 i~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+++++..+++++.+.+...++++++++++++.++|+++++++++++|
T Consensus 264 l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~ 310 (348)
T 3apz_A 264 LFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEH 310 (348)
T ss_dssp HHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 99999988888888777777889999999999999999999998865
No 2
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=5.2e-35 Score=269.75 Aligned_cols=178 Identities=33% Similarity=0.412 Sum_probs=136.0
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQG 80 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~G 80 (287)
|+|||||++||+++++.+++++++.+++++..+++||++++.+..+
T Consensus 131 l~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~---------------------------------- 176 (345)
T 3oyr_A 131 LVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHD---------------------------------- 176 (345)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTSSC----------------------------------
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCC----------------------------------
Confidence 5899999999999999999999999999988888888888765443
Q ss_pred hhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCc
Q psy17022 81 EFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160 (287)
Q Consensus 81 Q~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk 160 (287)
..+++++|++|+.+|||+||++||++|+++++.+++..+.+++||.++|++|||+||++|+++++
T Consensus 177 ----------~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~----- 241 (345)
T 3oyr_A 177 ----------LNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGAT----- 241 (345)
T ss_dssp ----------SSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---------
T ss_pred ----------CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh-----
Confidence 34678899999999999999999999999999999888889999999999999888888887764
Q ss_pred cchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHH
Q psy17022 161 PTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPV 240 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~ 240 (287)
..+|||+|+|+++||+|||+
T Consensus 242 ------------------------------------------------------------~~~GK~~g~Dl~egK~TlP~ 261 (345)
T 3oyr_A 242 ------------------------------------------------------------ETLGKNAGDDFREGKATLPL 261 (345)
T ss_dssp ---------------------------------------------------------------------------CCHHH
T ss_pred ------------------------------------------------------------hhcCCCccchhhcCchHHHH
Confidence 45678888999999999999
Q ss_pred HHhhhhCc-cchHHHHh----hcCCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 241 LFACEKFP-ELNPMIMR----RFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 241 i~al~~~~-~~~~~l~~----~~~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+++++..+ +.++.+.+ ...+++++++++++++++|+++++++++++|
T Consensus 262 i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~ 313 (345)
T 3oyr_A 262 LLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADY 313 (345)
T ss_dssp HHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 99998754 33344433 3346788999999999999999999999875
No 3
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.6e-34 Score=266.41 Aligned_cols=178 Identities=30% Similarity=0.451 Sum_probs=142.5
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQG 80 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~G 80 (287)
|+|||||++||+++++.+++++++.+++++..+++||.+++.+..+
T Consensus 119 l~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~---------------------------------- 164 (341)
T 3mzv_A 119 LVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQN---------------------------------- 164 (341)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccC----------------------------------
Confidence 5899999999999999999999999888888888888887754332
Q ss_pred hhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCc
Q psy17022 81 EFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160 (287)
Q Consensus 81 Q~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk 160 (287)
..+++++|++|+.+|||+||++||++|+++++.+++..+.+++||.++|++|||+||++|+++++
T Consensus 165 ----------~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~----- 229 (341)
T 3mzv_A 165 ----------LATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKS----- 229 (341)
T ss_dssp ----------TTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred ----------CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh-----
Confidence 34678999999999999999999999999999988888888888888888888888887776654
Q ss_pred cchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHH
Q psy17022 161 PTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPV 240 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~ 240 (287)
..+|||+|+|+++||+|||+
T Consensus 230 ------------------------------------------------------------~~~GK~~g~Dl~egK~Tlp~ 249 (341)
T 3mzv_A 230 ------------------------------------------------------------AEIGKNTGDDFRERKLTMPV 249 (341)
T ss_dssp ------------------------------------------------------------------CCHHHHTTCCCHHH
T ss_pred ------------------------------------------------------------hhcCCCCCcccccCchhHHH
Confidence 46778888999999999999
Q ss_pred HHhhhhCccc-hHHH----HhhcCCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 241 LFACEKFPEL-NPMI----MRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 241 i~al~~~~~~-~~~l----~~~~~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+++++..++. +..+ .+...+++++++++++++++|++++|+.++++|
T Consensus 250 i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~ 301 (341)
T 3mzv_A 250 IKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGW 301 (341)
T ss_dssp HHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 9999987543 2223 233346788999999999999999999999875
No 4
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=2.1e-34 Score=266.50 Aligned_cols=178 Identities=27% Similarity=0.374 Sum_probs=144.9
Q ss_pred CchhHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDN---DVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDL 77 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~---~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~ 77 (287)
|+|||||++||+++++.+++ ++++.+++++..+++||++++.+.
T Consensus 120 l~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~--------------------------------- 166 (352)
T 3nf2_A 120 LVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYE--------------------------------- 166 (352)
T ss_dssp HHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHcc---------------------------------
Confidence 58999999999999999887 677777777777777777766443
Q ss_pred hhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccc
Q psy17022 78 VQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDA 157 (287)
Q Consensus 78 ~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~ 157 (287)
.+..+++++|++|+.+|||+||++||++|+++++.+++.++.+++||.++|++|||+||++|++++
T Consensus 167 -----------~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd--- 232 (352)
T 3nf2_A 167 -----------HRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGD--- 232 (352)
T ss_dssp -----------TCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred -----------cCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---
Confidence 333578899999999999999999999999999998887777887777777777777777776655
Q ss_pred cCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCCh
Q psy17022 158 MGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237 (287)
Q Consensus 158 ~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~T 237 (287)
+..+|||.|+|+++||+|
T Consensus 233 --------------------------------------------------------------~~~~GK~~g~Dl~egK~T 250 (352)
T 3nf2_A 233 --------------------------------------------------------------PDATGKQTWSDLRQRKKS 250 (352)
T ss_dssp --------------------------------------------------------------HHHHSSCTTHHHHTTCCC
T ss_pred --------------------------------------------------------------hhhhCCCcCcccccCCcc
Confidence 356788889999999999
Q ss_pred HHHHHhhhhCcc----chHHHHhh-------cCCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 238 APVLFACEKFPE----LNPMIMRR-------FQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 238 lp~i~al~~~~~----~~~~l~~~-------~~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
||++++++..++ +.+.+.+. ..+++++++++++|+++|+++++++++++|
T Consensus 251 lpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~ 311 (352)
T 3nf2_A 251 LPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQ 311 (352)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 999999997532 33444433 346788999999999999999999999875
No 5
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.6e-34 Score=262.74 Aligned_cols=177 Identities=25% Similarity=0.418 Sum_probs=146.8
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQG 80 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~G 80 (287)
|+|||||++||+.+++.+++++++.+++++..++.||++++.|..+
T Consensus 113 l~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~---------------------------------- 158 (334)
T 3rmg_A 113 LAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSN---------------------------------- 158 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCC----------------------------------
Confidence 5899999999999999988899998888888888888887765443
Q ss_pred hhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCc
Q psy17022 81 EFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160 (287)
Q Consensus 81 Q~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk 160 (287)
..+++++|++|+.+|||+||++||++|+++++.+++..+.+++||.++|++|||+||++|+++ +
T Consensus 159 ----------~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~-~----- 222 (334)
T 3rmg_A 159 ----------HSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYFD-S----- 222 (334)
T ss_dssp ------------CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-C-----
T ss_pred ----------CCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCC-h-----
Confidence 346788999999999999999999999999999998888899999999999999999988873 3
Q ss_pred cchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHH
Q psy17022 161 PTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPV 240 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~ 240 (287)
+.+|||+|+|+++||+|||+
T Consensus 223 ------------------------------------------------------------~~~GK~~g~Dl~egK~T~p~ 242 (334)
T 3rmg_A 223 ------------------------------------------------------------KKIGKPTGNDMLEGKLTLPA 242 (334)
T ss_dssp ------------------------------------------------------------------CCHHHHTTCCCHHH
T ss_pred ------------------------------------------------------------hhcCCCchhhhhcCchHHHH
Confidence 35678888999999999999
Q ss_pred HHhhhhCcc-----chHHHHhhcCCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 241 LFACEKFPE-----LNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 241 i~al~~~~~-----~~~~l~~~~~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+++++..++ +.+.+.+...+++++++++++++++|++++|+.++++|
T Consensus 243 i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~ 294 (334)
T 3rmg_A 243 LYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQY 294 (334)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 999997532 34445555668889999999999999999999999875
No 6
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=5.1e-34 Score=262.46 Aligned_cols=178 Identities=25% Similarity=0.413 Sum_probs=149.6
Q ss_pred CchhHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRD-NDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQ 79 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~-~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~ 79 (287)
|+||||+++||+++++..+ +++++.+++++..++.||.+|+.+..+
T Consensus 122 l~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~--------------------------------- 168 (334)
T 3pko_A 122 YAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYR--------------------------------- 168 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTTC---------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccC---------------------------------
Confidence 5899999999999999876 788888888888888888887754332
Q ss_pred hhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccC
Q psy17022 80 GEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMG 159 (287)
Q Consensus 80 GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~G 159 (287)
..+++++|++|+.+|||+||++||++|+++++.+++..+.+++||.++|++|||+||++|+++++
T Consensus 169 -----------~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~---- 233 (334)
T 3pko_A 169 -----------EDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDP---- 233 (334)
T ss_dssp -----------TTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCT----
T ss_pred -----------CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh----
Confidence 34678899999999999999999999999999988888888888888888888888888877764
Q ss_pred ccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHH
Q psy17022 160 KPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAP 239 (287)
Q Consensus 160 k~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp 239 (287)
..+|||+|+|+++||+|||
T Consensus 234 -------------------------------------------------------------~~~GK~~g~Dl~egK~Tlp 252 (334)
T 3pko_A 234 -------------------------------------------------------------KRTQKPVLEDLRSGVYSLP 252 (334)
T ss_dssp -------------------------------------------------------------TSCCHHHHHHHHTTCCCHH
T ss_pred -------------------------------------------------------------hhcCCCCCCccccCchhHH
Confidence 4567777899999999999
Q ss_pred HHHhhhhCc-cchHHHH-hhcCCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 240 VLFACEKFP-ELNPMIM-RRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 240 ~i~al~~~~-~~~~~l~-~~~~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
++++++..+ ++.+.+. +...+++++++++++++++|+++++++++++|
T Consensus 253 ~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~ 302 (334)
T 3pko_A 253 LLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDY 302 (334)
T ss_dssp HHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 999998865 4555553 34557889999999999999999999999875
No 7
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=4.1e-34 Score=264.86 Aligned_cols=176 Identities=26% Similarity=0.424 Sum_probs=137.4
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQG 80 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~G 80 (287)
|+|||||++||+++++++ +++++.+++++..++.||++++.|..
T Consensus 141 laGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~GQ~ldl~~~~----------------------------------- 184 (360)
T 3lmd_A 141 LAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTGQMRETVGPR----------------------------------- 184 (360)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHCCT-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHhccC-----------------------------------
Confidence 589999999999999986 47777777777777777776665433
Q ss_pred hhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCc
Q psy17022 81 EFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160 (287)
Q Consensus 81 Q~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk 160 (287)
+. +++++|++|+.+|||+||++||++|+++++.+++..+.+++||.++|++|||+||++|+++++
T Consensus 185 ---------~~-~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~----- 249 (360)
T 3lmd_A 185 ---------DT-DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSET----- 249 (360)
T ss_dssp ---------TS-CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred ---------CC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCh-----
Confidence 23 677899999999999999999999999999988877778888888777777777777776654
Q ss_pred cchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHH
Q psy17022 161 PTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPV 240 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~ 240 (287)
..+|||.|+|+++||+|||+
T Consensus 250 ------------------------------------------------------------~~~GK~~g~Dl~egK~Tlp~ 269 (360)
T 3lmd_A 250 ------------------------------------------------------------HESGKTPGTDLREGVFTLPV 269 (360)
T ss_dssp ------------------------------------------------------------------CCHHHHHTCCCHHH
T ss_pred ------------------------------------------------------------hhhCCCchhHHhcCCchHHH
Confidence 46778888999999999999
Q ss_pred HHhhhhCccc----hHHHHhhcCCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 241 LFACEKFPEL----NPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 241 i~al~~~~~~----~~~l~~~~~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+++++..++. .+++.+...+++++++++++++++|++++|++++++|
T Consensus 270 l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~ 320 (360)
T 3lmd_A 270 LYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRY 320 (360)
T ss_dssp HHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 9999875433 3333334456788999999999999999999999875
No 8
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=2.4e-33 Score=255.89 Aligned_cols=174 Identities=28% Similarity=0.368 Sum_probs=143.8
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQG 80 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~G 80 (287)
|+||||+++||+++++.+ +++++.+++++..++.||++++.+..
T Consensus 103 l~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~----------------------------------- 146 (315)
T 3tc1_A 103 MLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVGE----------------------------------- 146 (315)
T ss_dssp HHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHTT-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcCC-----------------------------------
Confidence 589999999999999987 78888888877777777777664433
Q ss_pred hhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCc
Q psy17022 81 EFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160 (287)
Q Consensus 81 Q~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk 160 (287)
+..+++++|++|+.+|||+||++||++|+++++.+ .+.+++||.++|++|||+||++|+++++
T Consensus 147 ---------~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~----- 209 (315)
T 3tc1_A 147 ---------CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDA----- 209 (315)
T ss_dssp ---------SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCT-----
T ss_pred ---------CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCH-----
Confidence 23578899999999999999999999999999987 5678888888888888888888877654
Q ss_pred cchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHH
Q psy17022 161 PTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPV 240 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~ 240 (287)
..+|||.|+|+++||+|||+
T Consensus 210 ------------------------------------------------------------~~~GK~~g~Dl~egK~T~p~ 229 (315)
T 3tc1_A 210 ------------------------------------------------------------KTLGKPNFSDFKEGKTTLPY 229 (315)
T ss_dssp ------------------------------------------------------------TCCCCCCCCTGGGTCCCHHH
T ss_pred ------------------------------------------------------------HHhCCChhhHHHcCChhHHH
Confidence 45678888999999999999
Q ss_pred HHhhhhCc-cchHHHHhhcC--CchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 241 LFACEKFP-ELNPMIMRRFQ--EPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 241 i~al~~~~-~~~~~l~~~~~--~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+++++..+ +.++.+..... +++++++++++++++|++++++.++++|
T Consensus 230 i~al~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~ 279 (315)
T 3tc1_A 230 LLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVY 279 (315)
T ss_dssp HHHHTTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 99999854 44444543322 6788999999999999999999999875
No 9
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=4.2e-33 Score=258.48 Aligned_cols=189 Identities=21% Similarity=0.291 Sum_probs=145.3
Q ss_pred CchhHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRD-NDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQ 79 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~-~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~ 79 (287)
|+||||++.||++++.... .++++.+++++..+++||.+++.|.....-. +. .
T Consensus 111 l~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~d-p~---------------~---------- 164 (358)
T 4dhd_A 111 LVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSD-PY---------------F---------- 164 (358)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHTBSSCCCC-HH---------------H----------
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHcccccccc-cc---------------c----------
Confidence 5899999999999987654 5889999999999999999988775211000 00 0
Q ss_pred hhhhhccCccch-hhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCcccc
Q psy17022 80 GEFMQLGSKETE-NERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAM 158 (287)
Q Consensus 80 GQ~~d~~~~~~~-~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~ 158 (287)
..++. .+++++|++|+.+|||+||++||++|+++++.+++..+.+.+||.++|++|||+||++|++++
T Consensus 165 -------~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd---- 233 (358)
T 4dhd_A 165 -------VQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGD---- 233 (358)
T ss_dssp -------HHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred -------cccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence 00122 578899999999999999999999999999998887777888888777777777777777655
Q ss_pred CccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCC-h
Q psy17022 159 GKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLA-T 237 (287)
Q Consensus 159 Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~-T 237 (287)
+..+|||+|+|+++||+ |
T Consensus 234 -------------------------------------------------------------~~~~GK~~g~Dl~egK~~T 252 (358)
T 4dhd_A 234 -------------------------------------------------------------PKKFGKEIGKDIKEHKRGN 252 (358)
T ss_dssp -------------------------------------------------------------------CTTHHHHTTBSCS
T ss_pred -------------------------------------------------------------hhhcCCCchhhHhcCChhh
Confidence 35678888999999999 9
Q ss_pred HHHHHhhhhCcc-----chHHHHhhcCCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 238 APVLFACEKFPE-----LNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 238 lp~i~al~~~~~-----~~~~l~~~~~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
||++++++..++ +.+.+.+...+++++++++++++++|++++|++++++|
T Consensus 253 ~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~ 307 (358)
T 4dhd_A 253 AVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARY 307 (358)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 999999998533 33444444557788999999999999999999999875
No 10
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.6e-33 Score=258.96 Aligned_cols=178 Identities=24% Similarity=0.420 Sum_probs=141.2
Q ss_pred CchhHHHHHHHHHHhcC-----CChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q psy17022 1 MAGDFILAVACQMISRL-----RDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMT 75 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~-----~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~ 75 (287)
|+||||++.||+++++. .+.++++.+++++..++.||.+++.|.
T Consensus 112 l~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~------------------------------- 160 (342)
T 1wy0_A 112 LAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFE------------------------------- 160 (342)
T ss_dssp HHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------------------------------
T ss_pred HHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHHHcc-------------------------------
Confidence 58999999999999998 445666666666666666666665443
Q ss_pred hhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCc
Q psy17022 76 DLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSS 155 (287)
Q Consensus 76 ~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~ 155 (287)
.+...++++|++|+.+|||+||.+||++|+++++.+++..+.+.+||.++|++|||+||++|+++++
T Consensus 161 -------------~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~ 227 (342)
T 1wy0_A 161 -------------KKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADE 227 (342)
T ss_dssp -------------TCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred -------------cCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 3334678999999999999999999999999999988877888888888887777777777776653
Q ss_pred cccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCC
Q psy17022 156 DAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGL 235 (287)
Q Consensus 156 ~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk 235 (287)
..+|||+|+|+++||
T Consensus 228 -----------------------------------------------------------------~~~GK~~g~Dl~egK 242 (342)
T 1wy0_A 228 -----------------------------------------------------------------KKLGKPVGSDIRKGK 242 (342)
T ss_dssp -----------------------------------------------------------------HHHTSCSCHHHHHTC
T ss_pred -----------------------------------------------------------------hhhCCCchhHHhCCC
Confidence 467888889999999
Q ss_pred ChHHHHHhhhhCcc-chHHHHhhcC---------------CchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 236 ATAPVLFACEKFPE-LNPMIMRRFQ---------------EPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 236 ~Tlp~i~al~~~~~-~~~~l~~~~~---------------~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+|||++++++..++ .++.+.+... +++++++++++++++|+++++++++++|
T Consensus 243 ~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~ 310 (342)
T 1wy0_A 243 KTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDM 310 (342)
T ss_dssp CCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 99999999987643 3444444332 2567999999999999999999998865
No 11
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=4.1e-33 Score=260.19 Aligned_cols=182 Identities=24% Similarity=0.359 Sum_probs=141.6
Q ss_pred CchhHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDN-DVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQ 79 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~-~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~ 79 (287)
|+|||||++||+++++.+.+ ..... +...+..+..+|+.
T Consensus 150 L~GD~Ll~~A~~~l~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~ 189 (380)
T 3lk5_A 150 LAGDMALVWAEDMLQDSGLSAEALAR----------------------------------------TRDAWRGMRTEVIG 189 (380)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHH----------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHH----------------------------------------HHHHHHHHHHHHHH
Confidence 58999999999999997643 21111 11112233456777
Q ss_pred hhhhhccCccchhhhHHHHHHHhhhhHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCcccc
Q psy17022 80 GEFMQLGSKETENERFAHYLTKTYRKTASL-IANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAM 158 (287)
Q Consensus 80 GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L-~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~ 158 (287)
||++|+.+..+..+++++|++|+.+|||+| |.+||.+|++++|.+++..+.+++||.++|++|||+||++|++++
T Consensus 190 GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd---- 265 (380)
T 3lk5_A 190 GQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGD---- 265 (380)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----
Confidence 777777776666778999999999999999 899999999999998887777777777777777777777776655
Q ss_pred CccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChH
Q psy17022 159 GKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATA 238 (287)
Q Consensus 159 Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tl 238 (287)
+..+|||+|+|+++||+||
T Consensus 266 -------------------------------------------------------------~~~~GK~~g~Dl~egK~T~ 284 (380)
T 3lk5_A 266 -------------------------------------------------------------PAITGKPAGDDIREGKRTV 284 (380)
T ss_dssp -------------------------------------------------------------HHHHSSCTTHHHHTTCCCH
T ss_pred -------------------------------------------------------------hhhhCCCchhhHhcCCchH
Confidence 4567888899999999999
Q ss_pred HHHHhhhhC----ccchHHHHhh---cCCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 239 PVLFACEKF----PELNPMIMRR---FQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 239 p~i~al~~~----~~~~~~l~~~---~~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
|++++++.+ |+.++.+... ..+++++++++++++++|+++++++++++|
T Consensus 285 p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~ 340 (380)
T 3lk5_A 285 LLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQL 340 (380)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 999999875 3344444433 246788999999999999999999999875
No 12
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=7.2e-33 Score=254.30 Aligned_cols=177 Identities=26% Similarity=0.446 Sum_probs=145.5
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQG 80 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~G 80 (287)
|+||||+++||+++++.+++++++.+++++..+++||.+++.|..+
T Consensus 110 l~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~---------------------------------- 155 (325)
T 3aqb_B 110 RTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFN---------------------------------- 155 (325)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------------------------
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcccC----------------------------------
Confidence 5899999999999999998899999888888888888887755433
Q ss_pred hhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCc
Q psy17022 81 EFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160 (287)
Q Consensus 81 Q~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk 160 (287)
..+++++|++|+.+|||+||++||++|++++|.+++..+.+.+||.++|++|||+||++|++++
T Consensus 156 ----------~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~------ 219 (325)
T 3aqb_B 156 ----------YPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSD------ 219 (325)
T ss_dssp ----------CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------
T ss_pred ----------CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------
Confidence 2467899999999999999999999999999998887777887777777777777777777655
Q ss_pred cchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHH
Q psy17022 161 PTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPV 240 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~ 240 (287)
+..+|||+|+|+++||+|||+
T Consensus 220 -----------------------------------------------------------~~~~GK~~g~Dl~~gk~T~p~ 240 (325)
T 3aqb_B 220 -----------------------------------------------------------EATLGKPVGSDIRNGHITYPL 240 (325)
T ss_dssp -----------------------------------------------------------HHHHSSCTTHHHHTTCCCHHH
T ss_pred -----------------------------------------------------------hhhcCCccchHhhCCCccHHH
Confidence 356788889999999999999
Q ss_pred HHhhhhCcc-chHHHH---hhcC---CchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 241 LFACEKFPE-LNPMIM---RRFQ---EPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 241 i~al~~~~~-~~~~l~---~~~~---~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+++++..++ .++.+. +... +++++++++++++++ ++++++..+++|
T Consensus 241 i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 293 (325)
T 3aqb_B 241 MAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQY-GIEPAELLSRKY 293 (325)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHH-THHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999987643 333443 3322 257899999999999 999999998764
No 13
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=7.2e-33 Score=251.20 Aligned_cols=168 Identities=24% Similarity=0.398 Sum_probs=137.1
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQG 80 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~G 80 (287)
|+||||++.||+++++.+++++++.+++++..+++||.+++.|..+
T Consensus 107 l~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~---------------------------------- 152 (299)
T 1v4e_A 107 AAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYK---------------------------------- 152 (299)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTS----------------------------------
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHHHccCC----------------------------------
Confidence 5899999999999999988899998888888888888887754332
Q ss_pred hhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCc
Q psy17022 81 EFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160 (287)
Q Consensus 81 Q~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk 160 (287)
. +++++|++|+.+|||+||++||++|+++++.++ +.+.+||.++|++|||+||++|+++
T Consensus 153 ----------~-~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~------- 211 (299)
T 1v4e_A 153 ----------P-ITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAG------- 211 (299)
T ss_dssp ----------C-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred ----------C-CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccC-------
Confidence 2 678899999999999999999999999998865 5666666666666666666666554
Q ss_pred cchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHH
Q psy17022 161 PTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPV 240 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~ 240 (287)
+ ..+|||+|+|+++||+|||+
T Consensus 212 ----------------------------------------------------------d-~~~GK~~g~Dl~egK~T~p~ 232 (299)
T 1v4e_A 212 ----------------------------------------------------------M-EKIGKDGFLDLKNGVASFPL 232 (299)
T ss_dssp ----------------------------------------------------------C-CSCCTTSSCCCTTTTCCHHH
T ss_pred ----------------------------------------------------------c-cccCCCcchHhhCCCchHHH
Confidence 4 46677778999999999999
Q ss_pred HHhhhhCccchHHHHhhcCCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 241 LFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 241 i~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+++++..+++.+.+.+ +++++++++++++|+++++++++++|
T Consensus 233 l~al~~~~~l~~~l~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~ 274 (299)
T 1v4e_A 233 VTAMEKFPEARQMFEN-----RDWSGLMSFMREKGILKECEETLKVL 274 (299)
T ss_dssp HHHHHHCHHHHHHHHT-----TCHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHhH-----HHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 9999887664444432 57899999999999999999998865
No 14
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=6.8e-33 Score=255.77 Aligned_cols=180 Identities=17% Similarity=0.210 Sum_probs=131.7
Q ss_pred CchhHHHHHHHHHHhcCCChH-----HHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q psy17022 1 MAGDFILAVACQMISRLRDND-----VTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMT 75 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~-----~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~ 75 (287)
|+|||||++||+++++.+++. +++.+++++..+++||++++.|+.+.
T Consensus 106 l~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~---------------------------- 157 (340)
T 2e8v_A 106 NTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFL---------------------------- 157 (340)
T ss_dssp HHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST----------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------------------------
Confidence 589999999999999998877 78888888888888888777443211
Q ss_pred hhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCc
Q psy17022 76 DLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSS 155 (287)
Q Consensus 76 ~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~ 155 (287)
....+++++|++|+.+|||+||++||++|+++++.++ ..+.+.+||.++|++|||+||++|++++
T Consensus 158 -------------~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~- 222 (340)
T 2e8v_A 158 -------------PEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDF- 222 (340)
T ss_dssp -------------TSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -------------ccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence 0024688999999999999999999999999998876 4566666666666666666666666554
Q ss_pred cccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCC
Q psy17022 156 DAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGL 235 (287)
Q Consensus 156 ~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk 235 (287)
+..+|||+|+|+++||
T Consensus 223 ----------------------------------------------------------------~~~~GK~~g~Dl~egK 238 (340)
T 2e8v_A 223 ----------------------------------------------------------------QMSSEKGFAEDITEGK 238 (340)
T ss_dssp --------------------------------------------------------------------CCCTTHHHHTTC
T ss_pred ----------------------------------------------------------------hhhhCCCchhhHhcCC
Confidence 4567888889999999
Q ss_pred ChHHHHHhhhhCcc---------chHHHHhhcCCchhHHHHHHHHH-hcChHHHHHHHHHhC
Q psy17022 236 ATAPVLFACEKFPE---------LNPMIMRRFQEPGDVEKAFEFVH-KSQGLEQTKFLARKH 287 (287)
Q Consensus 236 ~Tlp~i~al~~~~~---------~~~~l~~~~~~~~~~~~~~~~i~-~~g~~e~a~~~a~~y 287 (287)
+|||++++++..++ +.+.+.....+++..++++++|. ++|+++++++++++|
T Consensus 239 ~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~ 300 (340)
T 2e8v_A 239 LSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQL 300 (340)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999987543 33334333333334458999999 999999999999875
No 15
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=99.98 E-value=1e-32 Score=253.70 Aligned_cols=176 Identities=24% Similarity=0.242 Sum_probs=136.9
Q ss_pred CchhHHHHHHHHHHhcCCC-----hHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q psy17022 1 MAGDFILAVACQMISRLRD-----NDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMT 75 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~-----~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~ 75 (287)
|+||||+++||+++++..+ +++++.+++++..++.||.+++.|.
T Consensus 105 l~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~------------------------------- 153 (330)
T 1wmw_A 105 NAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWT------------------------------- 153 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------------
Confidence 5899999999999998754 5777777777777777777766430
Q ss_pred hhhhhhhhhccCccc-hhhhHHHHHHHhhhhHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhcc
Q psy17022 76 DLVQGEFMQLGSKET-ENERFAHYLTKTYRKTASL-IANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFIS 153 (287)
Q Consensus 76 ~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KTg~L-~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~ 153 (287)
..+ ..+++++|++|+.+|||+| |++||++|+++++.+++.. +.+||.++|++|||+||++|+++
T Consensus 154 ------------~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~ 219 (330)
T 1wmw_A 154 ------------LGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEG 219 (330)
T ss_dssp ------------HSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ------------ccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccC
Confidence 222 3578899999999999999 9999999999999876554 67777776666666666666655
Q ss_pred CccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhh
Q psy17022 154 SSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKL 233 (287)
Q Consensus 154 ~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~ 233 (287)
+ +. +|||+|+|+++
T Consensus 220 d-----------------------------------------------------------------~~-~GK~~g~Dl~e 233 (330)
T 1wmw_A 220 G-----------------------------------------------------------------EA-YGKERAGDLYE 233 (330)
T ss_dssp S-----------------------------------------------------------------CC-CSSSTTHHHHH
T ss_pred C-----------------------------------------------------------------cc-cCCCcCchhhC
Confidence 4 45 77888899999
Q ss_pred CCChHHHHHhhhhCcc-chHHHHhhcC----C--chhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 234 GLATAPVLFACEKFPE-LNPMIMRRFQ----E--PGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 234 gk~Tlp~i~al~~~~~-~~~~l~~~~~----~--~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
||+|||++++++..++ .++.+..... + ++++++++++++++|+++++++++++|
T Consensus 234 gK~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~ 294 (330)
T 1wmw_A 234 GKRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRL 294 (330)
T ss_dssp TCCCHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 9999999999988753 3344433322 2 578999999999999999999998875
No 16
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=99.98 E-value=3e-32 Score=247.41 Aligned_cols=175 Identities=16% Similarity=0.207 Sum_probs=130.2
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQG 80 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~G 80 (287)
|+||||+++||+.+++.+++++++.+++++..+++||.+++.|+.+
T Consensus 91 l~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~---------------------------------- 136 (301)
T 2q80_A 91 NSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDN---------------------------------- 136 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHT----------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccC----------------------------------
Confidence 5899999999999999988889998888888888888887744221
Q ss_pred hhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCc
Q psy17022 81 EFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160 (287)
Q Consensus 81 Q~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk 160 (287)
...+++++|++|+.+|||+||.++|++|+++++.++ .+.+||.++|++|||+||++|
T Consensus 137 ---------~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld---------- 193 (301)
T 2q80_A 137 ---------YTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYAN---------- 193 (301)
T ss_dssp ---------TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHH----------
T ss_pred ---------CCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhh----------
Confidence 124678999999999999999999999999988752 245555555555555555555
Q ss_pred cchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHH
Q psy17022 161 PTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPV 240 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~ 240 (287)
+++++..+|||.|+|+++||+|||+
T Consensus 194 -------------------------------------------------------~~~~~~~~GK~~g~Dl~egK~T~p~ 218 (301)
T 2q80_A 194 -------------------------------------------------------LHSKEYSENKSFCEDLTEGKFSFPT 218 (301)
T ss_dssp -------------------------------------------------------HHCC------CTTHHHHHTCCCHHH
T ss_pred -------------------------------------------------------hcCChhhhCCCccchhhcCCcHHHH
Confidence 5555567889999999999999999
Q ss_pred HHhhhhCcc---chHHHHhhcCCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 241 LFACEKFPE---LNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 241 i~al~~~~~---~~~~l~~~~~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+++++..++ +.+.+.....+++..++++++++++|+++++++++++|
T Consensus 219 i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~ 268 (301)
T 2q80_A 219 IHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKEL 268 (301)
T ss_dssp HHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 999997654 33334333333333344999999999999999999875
No 17
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=99.97 E-value=5.9e-31 Score=244.96 Aligned_cols=190 Identities=12% Similarity=0.071 Sum_probs=144.0
Q ss_pred CchhHHHHHHHHHHhcC-----CChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q psy17022 1 MAGDFILAVACQMISRL-----RDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMT 75 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~-----~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~ 75 (287)
++||||++.||+++++. .+.++++.+++++..++.||++++.+..+. .++..
T Consensus 126 l~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~-~~~~~---------------------- 182 (362)
T 1yhl_A 126 NDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDS-NKLDP---------------------- 182 (362)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCG-GGCCT----------------------
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHccccc-ccccc----------------------
Confidence 47999999999999987 446888888988888888888888765110 00000
Q ss_pred hhhhhhhhhccCccch---hhhHHHHHHHhhhhHHHH-HHHHHHHHHHhcC-CChHHHHHHHHHHHHHhHHHHhhhhhhh
Q psy17022 76 DLVQGEFMQLGSKETE---NERFAHYLTKTYRKTASL-IANCVKASAMLGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLD 150 (287)
Q Consensus 76 ~~~~GQ~~d~~~~~~~---~~~~~~y~~~~~~KTg~L-~~~~~~~g~~la~-~~~~~~~~l~~~g~~~G~afQi~dD~~d 150 (287)
++...++. .+++++|++|+.+|||+| |++||++|++++| .+++..+.+.+||.++|++|||+||++|
T Consensus 183 --------~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD 254 (362)
T 1yhl_A 183 --------EVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMD 254 (362)
T ss_dssp --------TSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000011 478999999999999999 9999999999999 6766666677777777766666666666
Q ss_pred hccCccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhh
Q psy17022 151 FISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 230 (287)
Q Consensus 151 ~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~D 230 (287)
++++ +..+|| +|+|
T Consensus 255 ~~~d-----------------------------------------------------------------~~~~GK-~g~D 268 (362)
T 1yhl_A 255 CFTP-----------------------------------------------------------------PEQLGK-VGTD 268 (362)
T ss_dssp HHSC-----------------------------------------------------------------HHHHSS-CCCT
T ss_pred ccCC-----------------------------------------------------------------hHHhCC-Chhh
Confidence 6554 456788 7899
Q ss_pred HhhCCChHHHHHhhhhCcc-chHHHHhhcC--CchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 231 LKLGLATAPVLFACEKFPE-LNPMIMRRFQ--EPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 231 l~~gk~Tlp~i~al~~~~~-~~~~l~~~~~--~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+++||+|||++++++..++ .++.+.+... +++++++++++++++|+++++++++++|
T Consensus 269 l~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 328 (362)
T 1yhl_A 269 IEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEV 328 (362)
T ss_dssp TTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999998654 4455554432 4578999999999999999999888764
No 18
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=99.96 E-value=8e-30 Score=237.86 Aligned_cols=182 Identities=14% Similarity=0.101 Sum_probs=138.6
Q ss_pred CchhHHHHHHHHHHhcC-----CChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q psy17022 1 MAGDFILAVACQMISRL-----RDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMT 75 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~-----~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~ 75 (287)
++||||++.||+++++. ...++++++++++..++.||.+++.+..+...
T Consensus 151 ~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~-------------------------- 204 (374)
T 2qis_A 151 NDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNV-------------------------- 204 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCC--------------------------
T ss_pred HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc--------------------------
Confidence 36999999999999875 23466777777776666666666644322100
Q ss_pred hhhhhhhhhccCccchhhhHHHHHHHhhhhHHHH-HHHHHHHHHHhcC-CChHHHHHHHHHHHHHhHHHHhhhhhhhhcc
Q psy17022 76 DLVQGEFMQLGSKETENERFAHYLTKTYRKTASL-IANCVKASAMLGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFIS 153 (287)
Q Consensus 76 ~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L-~~~~~~~g~~la~-~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~ 153 (287)
....+++++|++|+.+|||+| |.+||.+|++++| ++++..+.+.+||.++|++|||+||++|+++
T Consensus 205 -------------d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~g 271 (374)
T 2qis_A 205 -------------DLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFG 271 (374)
T ss_dssp -------------CGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -------------ccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 001478899999999999999 9999999999999 8877777777777777777777777777665
Q ss_pred CccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhh
Q psy17022 154 SSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKL 233 (287)
Q Consensus 154 ~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~ 233 (287)
+ ++.+|| +|+|+++
T Consensus 272 d-----------------------------------------------------------------~~~~GK-~g~Dl~~ 285 (374)
T 2qis_A 272 D-----------------------------------------------------------------PSVTGK-IGTDIQD 285 (374)
T ss_dssp C-----------------------------------------------------------------HHHHCS-CCCTTTT
T ss_pred C-----------------------------------------------------------------hhhcCC-chhHHHc
Confidence 4 456788 7899999
Q ss_pred CCChHHHHHhhhhCcc-chHHHHhhcC--CchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 234 GLATAPVLFACEKFPE-LNPMIMRRFQ--EPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 234 gk~Tlp~i~al~~~~~-~~~~l~~~~~--~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
||+|||++++++.+++ .++.+..... +++++++++++++++|+.++++.++++|
T Consensus 286 gK~T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~ 342 (374)
T 2qis_A 286 NKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDS 342 (374)
T ss_dssp TCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 9999999999998654 4555655543 3678999999999999999888877654
No 19
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=99.96 E-value=6.2e-30 Score=232.12 Aligned_cols=147 Identities=22% Similarity=0.281 Sum_probs=105.7
Q ss_pred hhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccC
Q psy17022 75 TDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISS 154 (287)
Q Consensus 75 ~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~ 154 (287)
.+|+.||++|+.+.++ .+++++|++|+.+|||+||++||++|+++++.+++..+.+++||.++|++|||+||++|++++
T Consensus 148 ~~~~~GQ~~Dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d 226 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ-PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGD 226 (301)
T ss_dssp TTHHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5677777777777655 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhh--chhhHHHHHHHHhhhhccccCC
Q psy17022 155 SDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNL--GIAFQLVDDLLDFISSSDAMGK 225 (287)
Q Consensus 155 ~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~l--G~afQi~DDlld~~~~~~~~gK 225 (287)
++.+||++++|+.+||.|+|++++++.+...+ .+..+.+.+....+ +..-+.+.++.+++.++..-|.
T Consensus 227 ~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a---~~~~~~A~~~L~~l~~~~~~~~L~~l~~~i~~R~~~~~ 296 (301)
T 1rtr_A 227 EAKLGKKVGSDLENNKSTYVSLLGKDGAEDKL---TYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDHKGH 296 (301)
T ss_dssp HCC-------------CCHHHHHHHHHHHHHH---HHHHHHHHHHHHTSCTTSCCHHHHHHHHHHHCC-----
T ss_pred HHHhCCCcchHHHcCCCcHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999988653332 23344444444444 3345677788888877665554
No 20
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=99.96 E-value=1.5e-29 Score=229.21 Aligned_cols=141 Identities=19% Similarity=0.272 Sum_probs=101.3
Q ss_pred hhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhcc
Q psy17022 74 MTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFIS 153 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~ 153 (287)
..+|+.||.+|+.++.. .+++++|.+|+.+|||+||++||++|+++++.+++..+.+++||.++|++|||+||++|+++
T Consensus 155 ~~~~~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~ 233 (302)
T 3p8l_A 155 NQGMVSGQMGDIEGEKV-SLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATS 233 (302)
T ss_dssp TTTHHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHccCC-CCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35778888888877654 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhh-----chhhHHHHHHHHhhh
Q psy17022 154 SSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNL-----GIAFQLVDDLLDFIS 218 (287)
Q Consensus 154 ~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~l-----G~afQi~DDlld~~~ 218 (287)
+++.+||++++|+.+||.|+|++++++.+...+ .+..+.+.+....+ +..-+.+.++.+|+.
T Consensus 234 d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~---~~~~~~A~~~L~~~~~~~~~~~~~~L~~l~~~~~ 300 (302)
T 3p8l_A 234 TEADLGKKVGRDEALNKSTYPALLGIAGAKDAL---THQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQ 300 (302)
T ss_dssp -----------------CCHHHHHCHHHHHHHH---HHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHTS
T ss_pred CHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHH---HHHHHHHHHHHHhcccccCChhHHHHHHHHHHHh
Confidence 999999999999999999999999998764332 23344444444455 555566777777654
No 21
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=99.96 E-value=1.3e-29 Score=230.06 Aligned_cols=147 Identities=24% Similarity=0.327 Sum_probs=110.9
Q ss_pred hhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhHHHHhhhhhhhhcc
Q psy17022 75 TDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGA-DDKLSEVAFEYGRNLGIAFQLVDDLLDFIS 153 (287)
Q Consensus 75 ~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~-~~~~~~~l~~~g~~~G~afQi~dD~~d~~~ 153 (287)
.+|+.||.+|+.+.++ .+++++|++|+.+|||+||++||++|+++++. +++..+.+++||.++|++|||+||++|+++
T Consensus 152 ~~~~~GQ~lDl~~~~~-~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~ 230 (304)
T 3lsn_A 152 AGMVGGQAIDLGSVGL-KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVES 230 (304)
T ss_dssp TTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHhHHHHHHccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4677888888877655 48899999999999999999999999999999 888899999999999999999999999999
Q ss_pred CccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCC
Q psy17022 154 SSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 225 (287)
Q Consensus 154 ~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK 225 (287)
+++.+||++++|+.+||.|+|++++++.+...+ .+..+.+.+....++..-+.+.++.+|+.++..-|.
T Consensus 231 ~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a---~~~~~~A~~~L~~l~~~~~~L~~l~~~~~~R~~~~~ 299 (304)
T 3lsn_A 231 DTATLGKRQGADIARDKPTYPALLGLAAAKEYA---LELRDQALHALRPFDAAAEPLRELARYIVERRSEGH 299 (304)
T ss_dssp HHHHC------------CCHHHHHCHHHHHHHH---HHHHHHHHHHTTTSCGGGHHHHHHHHHHHC------
T ss_pred ChHHhCCCcccHHhcCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999998764333 355566666666777667788888888877665443
No 22
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=99.96 E-value=3.5e-29 Score=228.02 Aligned_cols=143 Identities=26% Similarity=0.380 Sum_probs=105.6
Q ss_pred hhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhHHHHhhhhhhhhc
Q psy17022 74 MTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 152 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~-~~~~~~~~l~~~g~~~G~afQi~dD~~d~~ 152 (287)
..+|+.||.+|+.+++. .+++++|++|+.+|||+||++||++|+++++ .+++..+.+++||.++|++|||+||++|++
T Consensus 150 ~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~ 228 (317)
T 4f62_A 150 RNGMITGQMIDLSSENK-NISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLT 228 (317)
T ss_dssp TTTHHHHHHHHHHTSSS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHHhHHHHHhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35788888888887654 4889999999999999999999999999999 799999999999999999999999999999
Q ss_pred cCccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhc
Q psy17022 153 SSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSS 220 (287)
Q Consensus 153 ~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~ 220 (287)
++++.+||++++|+.+||.|+|++++++.+...+ .+..+.+.+....++..-+.+.++.+|+.++
T Consensus 229 gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a---~~~~~~A~~~L~~l~~~~~~L~~l~~~~~~R 293 (317)
T 4f62_A 229 SDTETLGKTQFSDAEANKATYPKLLGLDGAKALV---VRLHEQAIAQISEFGDKSQPLTDLANYIIDR 293 (317)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHH---HHHHHHHHHHHGGGGGGGHHHHHHHHHHHC-
T ss_pred CChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHH---HHHHHHHHHHHHhCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998764433 3445555555666666667777888877654
No 23
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=99.96 E-value=2.7e-29 Score=229.42 Aligned_cols=144 Identities=23% Similarity=0.319 Sum_probs=108.8
Q ss_pred hhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhHHHHhhhhhhhhc
Q psy17022 74 MTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 152 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~-~~~~~~~~l~~~g~~~G~afQi~dD~~d~~ 152 (287)
..+|+.||.+|+.++++ .+++++|++|+.+|||+||++||++|+++++ .+++..+.+++||.++|++|||+||++|++
T Consensus 157 ~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~ 235 (324)
T 3ts7_A 157 PAGMVGGQAIDLASVGK-KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEE 235 (324)
T ss_dssp TTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHhHHHHHHccCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46788888888888765 7899999999999999999999999999999 899999999999999999999999999999
Q ss_pred cCccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhcc
Q psy17022 153 SSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 221 (287)
Q Consensus 153 ~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~ 221 (287)
++++.+||++++|+.+||.|+|++++++.+...+ .+..+.+......++..-+.+.++.+|+.++.
T Consensus 236 ~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a---~~~~~~A~~~L~~l~~~~~~L~~la~~~~~R~ 301 (324)
T 3ts7_A 236 SDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKA---EEMHEAALESLAGFGPEADLLRELARFIIQRQ 301 (324)
T ss_dssp CC---------------CCCHHHHHCHHHHHHHH---HHHHHHHHHTTTTCCGGGHHHHHHHHHHHHTS
T ss_pred CCHHHhCCCccchhhcCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998764333 34455566666666666677778888776543
No 24
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=99.96 E-value=3.4e-29 Score=233.04 Aligned_cols=181 Identities=15% Similarity=0.125 Sum_probs=137.4
Q ss_pred chhHHHHHHHHHHhcC-----CChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q psy17022 2 AGDFILAVACQMISRL-----RDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTD 76 (287)
Q Consensus 2 ~GD~l~~~a~~~l~~~-----~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~ 76 (287)
.|||+++.||+++++. .+.++++++++++..++.||.+++.+..+..
T Consensus 145 dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~---------------------------- 196 (367)
T 1uby_A 145 DSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSK---------------------------- 196 (367)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS----------------------------
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccc----------------------------
Confidence 3666778899999886 3356777777777777777777664433210
Q ss_pred hhhhhhhhccCccchhhhHHHHHHHhhhhHHHH-HHHHHHHHHHhcC-CChHHHHHHHHHHHHHhHHHHhhhhhhhhccC
Q psy17022 77 LVQGEFMQLGSKETENERFAHYLTKTYRKTASL-IANCVKASAMLGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISS 154 (287)
Q Consensus 77 ~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L-~~~~~~~g~~la~-~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~ 154 (287)
.....+++++|++|+.+|||+| |.+||.+|++++| ++++..+.+++||.++|++|||+||++|++++
T Consensus 197 -----------~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd 265 (367)
T 1uby_A 197 -----------VDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGD 265 (367)
T ss_dssp -----------CCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred -----------cccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0001578899999999999999 9999999999999 78777777777777777777777777776655
Q ss_pred ccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhC
Q psy17022 155 SDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLG 234 (287)
Q Consensus 155 ~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~g 234 (287)
++.+|| +|+|+++|
T Consensus 266 -----------------------------------------------------------------~~~~GK-~g~Dl~eg 279 (367)
T 1uby_A 266 -----------------------------------------------------------------PALTGA-VGTDIQDN 279 (367)
T ss_dssp -----------------------------------------------------------------TTCSSC-CCCCSSSC
T ss_pred -----------------------------------------------------------------hhhcCC-chhhHHcC
Confidence 456778 78999999
Q ss_pred CChHHHHHhhhhCc-cchHHHHhhcC--CchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 235 LATAPVLFACEKFP-ELNPMIMRRFQ--EPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 235 k~Tlp~i~al~~~~-~~~~~l~~~~~--~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
|+|||++++++.++ +.++.+.+... +++++++++++++++|+.++++.++++|
T Consensus 280 K~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~ 335 (367)
T 1uby_A 280 KCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESS 335 (367)
T ss_dssp CCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 99999999999854 45556655543 3678999999999999888887877654
No 25
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=99.96 E-value=3.2e-29 Score=228.84 Aligned_cols=144 Identities=19% Similarity=0.251 Sum_probs=106.1
Q ss_pred hhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhcc
Q psy17022 74 MTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFIS 153 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~ 153 (287)
..+|+.||.+|+.+..+..+++++|.+|+.+|||+||++||++|+++++.+++..+.+++||.++|++|||+||++|+++
T Consensus 179 ~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~g 258 (324)
T 3uca_A 179 SDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVG 258 (324)
T ss_dssp TTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 46788888889888777678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhc
Q psy17022 154 SSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSS 220 (287)
Q Consensus 154 ~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~ 220 (287)
+++.+||++++|+.+||.|+|++++++.+...+ .+..+.+.+....++..-+.+.++.+|+.++
T Consensus 259 d~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a---~~~~~~A~~~L~~l~~~~~~L~~la~~i~~R 322 (324)
T 3uca_A 259 NAKDLGKNVHKDQESNKNNYITIFGLEECKKKC---VNITEECIEILSSIKGNTEPLKVLTMKLLER 322 (324)
T ss_dssp C-----------------CHHHHHCHHHHHHHH---HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHC
T ss_pred CHHHhCCCcchHhhcCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999998764333 3444455555555555556777777776553
No 26
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=99.96 E-value=2.6e-29 Score=230.74 Aligned_cols=141 Identities=23% Similarity=0.274 Sum_probs=98.6
Q ss_pred hhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccC
Q psy17022 75 TDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISS 154 (287)
Q Consensus 75 ~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~ 154 (287)
.+|+.||++|+.++++ .+++++|++|+.+|||+||++|+++|++++|.+++..+.+.+||.++|++|||+||++|++++
T Consensus 192 ~~~~~GQ~lDl~~~~~-~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd 270 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK-APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTAD 270 (335)
T ss_dssp TSHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5667777777766554 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhh
Q psy17022 155 SDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISS 219 (287)
Q Consensus 155 ~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~ 219 (287)
++.+||++++|+.+||.|+|++++++.+...+ .+..+.+.+....++..-+.+.++.+++.+
T Consensus 271 ~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a---~~~~~~A~~~L~~l~~~~~~L~~l~~~i~~ 332 (335)
T 2h8o_A 271 AATMGKATGKDAARGKGTLVALRGEAWAREKL---QEQVAEASELLAPYGEKAAILIAAARFIAE 332 (335)
T ss_dssp ---------------CCCHHHHHCHHHHHHHH---HHHHHHHHHHTGGGGGGGHHHHHHHHHHHC
T ss_pred HHHhCCCcchHHhcCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 99999999999999999999999987653332 233444444444454445566666666544
No 27
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=99.96 E-value=4.2e-29 Score=233.94 Aligned_cols=188 Identities=14% Similarity=0.119 Sum_probs=138.4
Q ss_pred CchhHHHHHH--HHHHhcC-CC-h---HHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy17022 1 MAGDFILAVA--CQMISRL-RD-N---DVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAI 73 (287)
Q Consensus 1 l~GD~l~~~a--~~~l~~~-~~-~---~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~ 73 (287)
++||+|+..+ |+++++. .+ + ++++++++++..++.||.+++.|......
T Consensus 152 l~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~------------------------ 207 (390)
T 3dyh_A 152 AINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNK------------------------ 207 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGG------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------------------------
Confidence 4799999754 7888774 22 2 67788888887777777777765321100
Q ss_pred hhhhhhhhhhhc--cCc---cchhhhHHHHHHHhhhhHHHH-HHHHHHHHHHhcCCChHH-HHHHHHHHHHHhHHHHhhh
Q psy17022 74 MTDLVQGEFMQL--GSK---ETENERFAHYLTKTYRKTASL-IANCVKASAMLGGADDKL-SEVAFEYGRNLGIAFQLVD 146 (287)
Q Consensus 74 ~~~~~~GQ~~d~--~~~---~~~~~~~~~y~~~~~~KTg~L-~~~~~~~g~~la~~~~~~-~~~l~~~g~~~G~afQi~d 146 (287)
.|. ... ....+++++|++|+.+|||+| |.+||++|++++|.+++. .+.+++||.++|++|||+|
T Consensus 208 ---------~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~D 278 (390)
T 3dyh_A 208 ---------LDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQD 278 (390)
T ss_dssp ---------CCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 013578999999999999999 999999999999987654 5666666666666666666
Q ss_pred hhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCC
Q psy17022 147 DLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKP 226 (287)
Q Consensus 147 D~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~ 226 (287)
|++|+++ +++.+||
T Consensus 279 DiLD~~g-----------------------------------------------------------------d~~~~GK- 292 (390)
T 3dyh_A 279 DVMDCFT-----------------------------------------------------------------PPERLGK- 292 (390)
T ss_dssp HHHHHHS-----------------------------------------------------------------CHHHHSS-
T ss_pred HHHhhcC-----------------------------------------------------------------ChHHhCC-
Confidence 6666555 4456788
Q ss_pred chhhHhhCCChHHHHHhhhhC-ccchHHHHhhc--CCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 227 TAADLKLGLATAPVLFACEKF-PELNPMIMRRF--QEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 227 ~g~Dl~~gk~Tlp~i~al~~~-~~~~~~l~~~~--~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+|+|+++||+|||++++++.. ++.++.+...+ .+++++++++++++++|++++++.++++|
T Consensus 293 ~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~~~~~~~~~~~~ 356 (390)
T 3dyh_A 293 VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAV 356 (390)
T ss_dssp CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 899999999999999999985 44555666544 36788999999999999999999988764
No 28
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=99.96 E-value=3.2e-29 Score=227.30 Aligned_cols=142 Identities=21% Similarity=0.352 Sum_probs=103.9
Q ss_pred hhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhHHHHhhhhhhhhc
Q psy17022 74 MTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 152 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~-~~~~~~~~l~~~g~~~G~afQi~dD~~d~~ 152 (287)
..+|+.||.+|+.+.+ ..+++++|++|+.+|||+||++||++|+++++ .+++..+.+++||.++|++|||+||++|++
T Consensus 157 ~~~~~~GQ~lDl~~~~-~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~ 235 (302)
T 3p8r_A 157 AQGMCLGQALDLAAEN-RLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDII 235 (302)
T ss_dssp TTTHHHHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHhHHHHHHccC-CCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3578888888888764 46889999999999999999999999999999 788888999999999999999999999999
Q ss_pred cCccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhh
Q psy17022 153 SSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISS 219 (287)
Q Consensus 153 ~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~ 219 (287)
++++.+||++++|+.+||.|+|++++++.+...+ .+..+.+.+....++..-+.+.++.+|+.+
T Consensus 236 ~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a---~~~~~~A~~~L~~l~~~~~~L~~l~~~~~~ 299 (302)
T 3p8r_A 236 SDTETLGKPQGSDQELNKSTYPALLGLEGAQQKA---HTLLQEALLALEAIPYNTEHLEEFARYVVE 299 (302)
T ss_dssp TC---------------CCCHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSSCTHHHHHHHHHHHH
T ss_pred CCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999998764433 344455555555555555666666666654
No 29
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=99.96 E-value=3.3e-29 Score=228.09 Aligned_cols=145 Identities=19% Similarity=0.288 Sum_probs=110.6
Q ss_pred hhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHhHHHHhhhhhhhh
Q psy17022 74 MTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGG--ADDKLSEVAFEYGRNLGIAFQLVDDLLDF 151 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~--~~~~~~~~l~~~g~~~G~afQi~dD~~d~ 151 (287)
..+|+.||.+|+.++++..+++++|++|+.+|||+||++||++ +++++ .+++..+.+++||.++|++|||+||++|+
T Consensus 157 ~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~ 235 (313)
T 3lom_A 157 ISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDL 235 (313)
T ss_dssp TTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3688889999998887768899999999999999999999999 99999 88999999999999999999999999999
Q ss_pred ccCccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccc
Q psy17022 152 ISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDA 222 (287)
Q Consensus 152 ~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~ 222 (287)
+++++.+||++++|+.+||.|+|++++++.+...+ .+..+.+.+....++..-+.+.++.+|+.++..
T Consensus 236 ~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a---~~~~~~A~~~L~~l~~~~~~L~~la~~~~~R~~ 303 (313)
T 3lom_A 236 YAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEI---AVHYQIAMDSLRLFGSKAAALIELTKQLQNRSN 303 (313)
T ss_dssp HCC---------------CCCHHHHSCHHHHHHHH---HHHHHHHHHTTTTTGGGGHHHHHHHHHHHHHHH
T ss_pred cCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999998764332 344555666666666666778888888876544
No 30
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=99.96 E-value=3.6e-29 Score=227.16 Aligned_cols=144 Identities=26% Similarity=0.334 Sum_probs=110.0
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHH-Hhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKA-IMTDLVQ 79 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~-~~~~~~~ 79 (287)
|+||||++.||+++++.+.+.-... .++....++ +..+|+.
T Consensus 118 laGD~Ll~~Af~~l~~~~~~~~~~~--------------------------------------~~~~~l~~a~g~~~m~~ 159 (309)
T 3pde_A 118 LAGDGLLTLAFQWLTATDLPATMQA--------------------------------------ALVQALATAAGPSGMVA 159 (309)
T ss_dssp HHHHHHHHHHHHHHTSSSCCHHHHH--------------------------------------HHHHHHHHHHSTTTHHH
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHH--------------------------------------HHHHHHHHHhhHhHHHH
Confidence 5899999999999998754321100 001111122 2367888
Q ss_pred hhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccC
Q psy17022 80 GEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMG 159 (287)
Q Consensus 80 GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~G 159 (287)
||.+|+.+++. .+++++|+.|+.+|||+||++||++|+++++.+++..+.+++||.++|++|||+||++|++++++.+|
T Consensus 160 GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~G 238 (309)
T 3pde_A 160 GQAKDIQSEHV-NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMG 238 (309)
T ss_dssp HHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hHHHHHHccCC-CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhC
Confidence 88888887654 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHhhhhhhhhHhhhhhhh
Q psy17022 160 KPTAADLKLGLATAPVLFACEKSA 183 (287)
Q Consensus 160 k~~~~Di~~~K~t~~~l~a~~~ga 183 (287)
|++++|+.+||.|+|++++++.+.
T Consensus 239 K~~g~Dl~egK~T~p~l~al~~a~ 262 (309)
T 3pde_A 239 KATQKDADEAKNTYPGKLGLIGAN 262 (309)
T ss_dssp ------CTTTSSSHHHHHCHHHHH
T ss_pred CCccchhhcCCccHHHHHHHHHhH
Confidence 999999999999999999998753
No 31
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.96 E-value=5.9e-29 Score=233.02 Aligned_cols=192 Identities=16% Similarity=0.149 Sum_probs=135.2
Q ss_pred CchhHHHHHHHHHHhcC-C-C---hHHHHHHHHHHHhhhhhhhhhh-cCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q psy17022 1 MAGDFILAVACQMISRL-R-D---NDVTLTLSQIMTDLVQGEFMQL-GSKETENERFAHYLTKTYRKTASLIANCVKAIM 74 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~-~-~---~~~~~~~s~~~~~l~~Ge~~~~-~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~ 74 (287)
++||||++.||+++++. . . .++++++++++..++.||.+++ .|.....
T Consensus 153 ~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~-------------------------- 206 (395)
T 2ihi_A 153 NDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYS-------------------------- 206 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH--------------------------
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHHHhhhhccc--------------------------
Confidence 36999999999999875 2 2 5788999999999999999988 3310000
Q ss_pred hhhhhhhhhhccC-----ccc---hhhhHHHHHHHhhhhHHHH-HHHHHHHHHHhcCCChHH--HHHHHHHHHHHhHHHH
Q psy17022 75 TDLVQGEFMQLGS-----KET---ENERFAHYLTKTYRKTASL-IANCVKASAMLGGADDKL--SEVAFEYGRNLGIAFQ 143 (287)
Q Consensus 75 ~~~~~GQ~~d~~~-----~~~---~~~~~~~y~~~~~~KTg~L-~~~~~~~g~~la~~~~~~--~~~l~~~g~~~G~afQ 143 (287)
+ ..+.+|..+ ++. ..+++++|++|+.+|||+| |.+|+++|++++|++++. .+.+.+||.++|++||
T Consensus 207 -~--~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQ 283 (395)
T 2ihi_A 207 -D--AHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQ 283 (395)
T ss_dssp -C--SSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHH
T ss_pred -c--cccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHH
Confidence 0 000000000 111 1578999999999999999 999999999999988776 7777777777777777
Q ss_pred hhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhcccc
Q psy17022 144 LVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAM 223 (287)
Q Consensus 144 i~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~ 223 (287)
|+||++|+++++ +.+
T Consensus 284 I~DD~LD~~gd~-----------------------------------------------------------------~~~ 298 (395)
T 2ihi_A 284 IHDDYLDIFGDS-----------------------------------------------------------------TKT 298 (395)
T ss_dssp HHHHHHHSCC----------------------------------------------------------------------
T ss_pred HHHHHHhhcCCH-----------------------------------------------------------------HHh
Confidence 777777776654 567
Q ss_pred CCCchhhHhhCCChHHHHHhhhhC-ccchHHHHhhcC--CchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 224 GKPTAADLKLGLATAPVLFACEKF-PELNPMIMRRFQ--EPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 224 gK~~g~Dl~~gk~Tlp~i~al~~~-~~~~~~l~~~~~--~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
|| +|+|+++||+|||++++++.+ ++.++.+..... +++++++++++++++|+++++++++++|
T Consensus 299 GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~ 364 (395)
T 2ihi_A 299 GK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQ 364 (395)
T ss_dssp -----CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHC----CHHHHHHHHHHHH
T ss_pred CC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHH
Confidence 78 789999999999999999985 445556655443 5678999999999999999999998764
No 32
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=99.96 E-value=4.6e-29 Score=225.67 Aligned_cols=177 Identities=23% Similarity=0.270 Sum_probs=116.0
Q ss_pred CchhHHHHHHHHHHhcCCC--h----HHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q psy17022 1 MAGDFILAVACQMISRLRD--N----DVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIM 74 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~--~----~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~ 74 (287)
|+||||++.||+++++... + ++++.+++++ +.
T Consensus 109 laGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~------------------------------------------g~ 146 (297)
T 3m0g_A 109 LAGDALQTLAFELCTDPVLGSAENRVALVAALAQAS------------------------------------------GA 146 (297)
T ss_dssp HHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHH------------------------------------------ST
T ss_pred HHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH------------------------------------------hH
Confidence 5899999999999998752 1 2333333332 12
Q ss_pred hhhhhhhhhhccCcc-chhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhcc
Q psy17022 75 TDLVQGEFMQLGSKE-TENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFIS 153 (287)
Q Consensus 75 ~~~~~GQ~~d~~~~~-~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~ 153 (287)
.+|+.||.+|+.+.. ...+++++|++|+.+|||+||++||++|+++++.+++ .+++||.++|++|||+||++|+++
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~ 223 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEG 223 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC----
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccC
Confidence 566666666666652 2367899999999999999999999999999998876 899999999999999999999999
Q ss_pred CccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCC
Q psy17022 154 SSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 225 (287)
Q Consensus 154 ~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK 225 (287)
+++.+||++++|+.+||.|+|++++++.+...+ .+..+.+......++..-+.+.++.+|+.++..-|.
T Consensus 224 ~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~---~~~~~~A~~~L~~~~~~~~~L~~l~~~~~~R~~~~~ 292 (297)
T 3m0g_A 224 NEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRA---ADLVAEAEAALAPYGEAASTLRACARYVIERDKEGH 292 (297)
T ss_dssp -----------------CCHHHHHCSSHHHHHH---HHHHHHHHHHTGGGGGGGHHHHHHHHHHTC------
T ss_pred CHHHhCCCccchhhcCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999998764332 344555556666666666788888888877665443
No 33
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=99.96 E-value=2.9e-29 Score=232.63 Aligned_cols=173 Identities=14% Similarity=0.048 Sum_probs=129.7
Q ss_pred CchhHHH---HHHHHHHhcC-CC---hHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy17022 1 MAGDFIL---AVACQMISRL-RD---NDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAI 73 (287)
Q Consensus 1 l~GD~l~---~~a~~~l~~~-~~---~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~ 73 (287)
|+||||+ +.+|+++++. ++ .++++++++++..++.||.+++.+..+.
T Consensus 141 l~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~-------------------------- 194 (368)
T 2her_A 141 NDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLS-------------------------- 194 (368)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCS--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhcccC--------------------------
Confidence 5799999 8889888764 21 2566666666666666666655443311
Q ss_pred hhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHH-HHHHHHHHHHhcCCChHH--HHHHHHHHHHHhHHHHhhhhhhh
Q psy17022 74 MTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASL-IANCVKASAMLGGADDKL--SEVAFEYGRNLGIAFQLVDDLLD 150 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L-~~~~~~~g~~la~~~~~~--~~~l~~~g~~~G~afQi~dD~~d 150 (287)
.....+ ++|++|+.+|||+| |.+||++|++++|.+++. .+.+++||.++|++|||+||++|
T Consensus 195 ---------------~~~~~~-~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD 258 (368)
T 2her_A 195 ---------------KADKIS-ERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSD 258 (368)
T ss_dssp ---------------SCSSHH-HHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCChH-HHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012233 89999999999999 999999999999987665 56666666666666666666666
Q ss_pred hccCccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhh
Q psy17022 151 FISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 230 (287)
Q Consensus 151 ~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~D 230 (287)
+ + .+|| +|+|
T Consensus 259 ~-----------------------------------------------------------------~----~~GK-~g~D 268 (368)
T 2her_A 259 Y-----------------------------------------------------------------L----FNDS-NADD 268 (368)
T ss_dssp H-----------------------------------------------------------------H----SCCS-SSCT
T ss_pred H-----------------------------------------------------------------H----hcCC-CCCh
Confidence 5 3 4678 7899
Q ss_pred HhhCCChHHHHHhhhhC-ccchHHHHhhcCCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 231 LKLGLATAPVLFACEKF-PELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 231 l~~gk~Tlp~i~al~~~-~~~~~~l~~~~~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+++||+|||++++++.+ ++.++.+...+..++ ++++++++++|+++++++++++|
T Consensus 269 l~egK~T~pvi~al~~a~~~~r~~L~~~~~~~~--~~v~~li~~~g~~~~~~~~~~~~ 324 (368)
T 2her_A 269 ICRFKLTWPLQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNA 324 (368)
T ss_dssp TTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HhCCcccHHHHHHHHhCCHHHHHHHHHHhCCcH--HHHHHHHHHCCcHHHHHHHHHHH
Confidence 99999999999999985 456667766665554 99999999999999999998865
No 34
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=99.96 E-value=7.4e-29 Score=225.01 Aligned_cols=108 Identities=27% Similarity=0.462 Sum_probs=100.4
Q ss_pred hhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHhHHHHhhhhhhhhc
Q psy17022 74 MTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAML-GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 152 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~l-a~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~ 152 (287)
..+|+.||++|+.+.++ .+++++|++|+.+|||+||++||++|+++ ++.+++..+.+.+||.++|++|||+||++|++
T Consensus 151 ~~~~~~GQ~~dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~ 229 (299)
T 1rqj_A 151 IAGMCGGQALDLDAEGK-HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVV 229 (299)
T ss_dssp TTTHHHHHHHHHHTTTT-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHHHHhccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36788888888887665 68899999999999999999999999999 99888889999999999999999999999999
Q ss_pred cCccccCccchhhhHhhhhhhhhHhhhhhh
Q psy17022 153 SSSDAMGKPTAADLKLGLATAPVLFACEKS 182 (287)
Q Consensus 153 ~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~g 182 (287)
++++.+||++++|+.+||.|+|++++++.+
T Consensus 230 ~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a 259 (299)
T 1rqj_A 230 GDTATLGKRQGADQQLGKSTYPALLGLEQA 259 (299)
T ss_dssp SCHHHHSSCTTHHHHHTCCCHHHHHCHHHH
T ss_pred CCHHHhCCChhhHHHcCCCcHHHHHHHHHH
Confidence 999999999999999999999999998764
No 35
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.95 E-value=1.3e-28 Score=231.46 Aligned_cols=193 Identities=16% Similarity=0.154 Sum_probs=132.7
Q ss_pred CchhHHH--HHHHHHHhcC-----CChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy17022 1 MAGDFIL--AVACQMISRL-----RDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAI 73 (287)
Q Consensus 1 l~GD~l~--~~a~~~l~~~-----~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~ 73 (287)
|+||||| +.+|.+++.. ...++++.+++++..+++||.+++.|..+...+.
T Consensus 151 l~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~---------------------- 208 (395)
T 3mav_A 151 AVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDA---------------------- 208 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC----------------------
T ss_pred HhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH----------------------
Confidence 5799977 5567777653 2247888999999999999999987655432111
Q ss_pred hhhhhhhhhhhccC--------ccchhhhHHHHHHHhhhhHHHH-HHHHHHHHHHhcCCCh--HHHHHHHHHHHHHhHHH
Q psy17022 74 MTDLVQGEFMQLGS--------KETENERFAHYLTKTYRKTASL-IANCVKASAMLGGADD--KLSEVAFEYGRNLGIAF 142 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~--------~~~~~~~~~~y~~~~~~KTg~L-~~~~~~~g~~la~~~~--~~~~~l~~~g~~~G~af 142 (287)
.|.+++.. .....+++++|++|+.+|||+| |.+|+.+|+++++.+. ...+.+++||.++|++|
T Consensus 209 ------~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aF 282 (395)
T 3mav_A 209 ------HREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYF 282 (395)
T ss_dssp -------CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHH
T ss_pred ------HHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHH
Confidence 11111111 1123679999999999999999 9999999999998742 23445555555555555
Q ss_pred HhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccc
Q psy17022 143 QLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDA 222 (287)
Q Consensus 143 Qi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~ 222 (287)
||+||+ +|++++++.
T Consensus 283 QI~DDi-----------------------------------------------------------------LD~~gd~~~ 297 (395)
T 3mav_A 283 QIHDDY-----------------------------------------------------------------LDIFGDSTK 297 (395)
T ss_dssp HHHHHH-----------------------------------------------------------------HHHC-----
T ss_pred HHHHHH-----------------------------------------------------------------HHhcCCHhh
Confidence 555555 555555677
Q ss_pred cCCCchhhHhhCCChHHHHHhhhhCc-cchHHHHhhc--CCchhHHHHHHHHHhcChHHHHHHHHHhC
Q psy17022 223 MGKPTAADLKLGLATAPVLFACEKFP-ELNPMIMRRF--QEPGDVEKAFEFVHKSQGLEQTKFLARKH 287 (287)
Q Consensus 223 ~gK~~g~Dl~~gk~Tlp~i~al~~~~-~~~~~l~~~~--~~~~~~~~~~~~i~~~g~~e~a~~~a~~y 287 (287)
+|| +|+|+++||+|||++++++.++ +.+..+.... .++++++.++++++++|+.+++++++++|
T Consensus 298 ~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~ 364 (395)
T 3mav_A 298 TGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQ 364 (395)
T ss_dssp ----CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 889 5999999999999999999864 4555565543 35677899999999999999999988764
No 36
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=99.95 E-value=5.3e-28 Score=219.93 Aligned_cols=142 Identities=16% Similarity=0.213 Sum_probs=105.8
Q ss_pred hhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHhHHHHhhhhhhhhc
Q psy17022 74 MTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLS-EVAFEYGRNLGIAFQLVDDLLDFI 152 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~-~~l~~~g~~~G~afQi~dD~~d~~ 152 (287)
..+|+.||.+|+.+++ ..+++++|++|+.+|||+||++||++|+++++.+++.. +.+++||.++|++|||+||++|++
T Consensus 158 ~~~m~~GQ~lDl~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~ 236 (311)
T 3llw_A 158 IKGMILGQALDCYFEN-TPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVT 236 (311)
T ss_dssp TTTHHHHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhcC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4688888888888763 56889999999999999999999999999999999888 999999999999999999999999
Q ss_pred cCccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhh---hchh-hHHHHHHHHhhhhcc
Q psy17022 153 SSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRN---LGIA-FQLVDDLLDFISSSD 221 (287)
Q Consensus 153 ~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~---lG~a-fQi~DDlld~~~~~~ 221 (287)
++++.+||+.++ .+||.|+|++++++.+... .++..+.+.+.... +|.. .+.+.++.+|+-+++
T Consensus 237 gd~~~~GK~~g~--~~gK~T~p~l~~l~~a~~~---~~~~~~~a~~~l~~~~~~~~~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 237 QDEEESGKTTHL--DSAKNSFVNLLGLERANNY---AQTLKTEVLNDLDALKPAYPLLQENLNALLNTLFKGE 304 (311)
T ss_dssp C---------------CCSCHHHHHCHHHHHHH---HHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHC--
T ss_pred CChHHHCccccc--ccCcchHHHHHHHHHHHHH---HHHHHHHHHHHhhhccccCccHHHHHHHHHHHHHhcc
Confidence 999999999998 9999999999999876322 13334444444455 5655 567888888877654
No 37
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=99.95 E-value=5.1e-28 Score=217.56 Aligned_cols=134 Identities=25% Similarity=0.330 Sum_probs=108.9
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQG 80 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~G 80 (287)
|+||||++.||+++++.++.++++.+++++..++.||.+++.+..
T Consensus 114 l~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~~~----------------------------------- 158 (284)
T 2ftz_A 114 LAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFER----------------------------------- 158 (284)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHhcc-----------------------------------
Confidence 589999999999999997778888888888888888888764322
Q ss_pred hhhhccCccch-hhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccC
Q psy17022 81 EFMQLGSKETE-NERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMG 159 (287)
Q Consensus 81 Q~~d~~~~~~~-~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~G 159 (287)
+. .+++++|++|+.+|||+||++||++|+++++.+++ .+.+||.++|++|||+||++|++++++.+|
T Consensus 159 ---------~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~G 226 (284)
T 2ftz_A 159 ---------RXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVG 226 (284)
T ss_dssp ---------SCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_pred ---------CcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhC
Confidence 22 46889999999999999999999999999998777 899999999999999999999999999999
Q ss_pred ccchhhhHhhhhhhhhHhhhhhhh
Q psy17022 160 KPTAADLKLGLATAPVLFACEKSA 183 (287)
Q Consensus 160 k~~~~Di~~~K~t~~~l~a~~~ga 183 (287)
|++++|+. |.|+|++++++.+.
T Consensus 227 K~~g~Dl~--K~T~p~l~~l~~a~ 248 (284)
T 2ftz_A 227 KDLGKDTE--XVTLVXXVGIQXAR 248 (284)
T ss_dssp ------------CHHHHHCHHHHH
T ss_pred CCcchhcc--ccchHHHHHHHHHH
Confidence 99999999 99999999987653
No 38
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=99.95 E-value=2.4e-27 Score=213.75 Aligned_cols=138 Identities=22% Similarity=0.290 Sum_probs=97.7
Q ss_pred hhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhcc
Q psy17022 74 MTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFIS 153 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~ 153 (287)
..+|+.||.+|+.++. ..+++++|..|+++|||+||++||++|+++++.+++..+.+++||.++|++|||+||++|+++
T Consensus 144 ~~~~~~GQ~lDl~~~~-~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~g 222 (291)
T 3npk_A 144 LNGMVIGQAIDCFFED-KRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTT 222 (291)
T ss_dssp TTTHHHHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5678888888888765 357899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchh-hHHHHHHHHhh
Q psy17022 154 SSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIA-FQLVDDLLDFI 217 (287)
Q Consensus 154 ~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~a-fQi~DDlld~~ 217 (287)
+++.+||+.+.| +||.|+|++++++.+... ..+..+.+......+|.. -+.+.++.+++
T Consensus 223 d~~~~GK~~~~d--~gK~T~p~l~~l~~a~~~---~~~~~~~a~~~l~~~~~~~~~~l~~la~~~ 282 (291)
T 3npk_A 223 SQEQSGKPTNND--IHKNSFVNLLGLEQAIKT---KENLLNECEQDLEKLNEKLAQMIQNLIIQY 282 (291)
T ss_dssp -----------------CCHHHHHCHHHHHHH---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ChHHHCCccchh--cCcchHHHHHHHHHhHHH---HHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 999999999887 999999999999876321 233444444444555544 44455555544
No 39
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=99.93 E-value=2.1e-26 Score=214.45 Aligned_cols=166 Identities=14% Similarity=0.065 Sum_probs=112.2
Q ss_pred CchhHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy17022 1 MAGDFILAVACQMISRLRDN-------DVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAI 73 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~-------~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~ 73 (287)
|+||||++.||++++++.+. +++++++++
T Consensus 141 l~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 176 (368)
T 2q58_A 141 NDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNES-------------------------------------------- 176 (368)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHH--------------------------------------------
Confidence 57999999999999887542 223333333
Q ss_pred hhhhhhhhhhhccCcc--chhhhHHHHHHHhhhhHHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhHHHHhhhhh
Q psy17022 74 MTDLVQGEFMQLGSKE--TENERFAHYLTKTYRKTASL-IANCVKASAMLGGA--DDKLSEVAFEYGRNLGIAFQLVDDL 148 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~--~~~~~~~~y~~~~~~KTg~L-~~~~~~~g~~la~~--~~~~~~~l~~~g~~~G~afQi~dD~ 148 (287)
..+++.||.+|+.+.. ..+.++++|++|+.+|||+| |.+|+.+|+++++. +++..+.+++||.++|++|||+||+
T Consensus 177 ~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDi 256 (368)
T 2q58_A 177 IFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDV 256 (368)
T ss_dssp HHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666543 33678899999999999999 89999999999874 4444445555555555555555555
Q ss_pred hhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCch
Q psy17022 149 LDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTA 228 (287)
Q Consensus 149 ~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g 228 (287)
+| +++ |||+|
T Consensus 257 LD-----------------------------------------------------------------~~~-----gK~~g 266 (368)
T 2q58_A 257 SD-----------------------------------------------------------------YLF-----NDSNA 266 (368)
T ss_dssp HH-----------------------------------------------------------------HHS-----CCCSS
T ss_pred hh-----------------------------------------------------------------ccc-----CCCCC
Confidence 55 432 78889
Q ss_pred hhHhhCCChHHHHHhhhhCc-cchHHHHhhcCCchhHHHHHHHHHhcChHHHHHH
Q psy17022 229 ADLKLGLATAPVLFACEKFP-ELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKF 282 (287)
Q Consensus 229 ~Dl~~gk~Tlp~i~al~~~~-~~~~~l~~~~~~~~~~~~~~~~i~~~g~~e~a~~ 282 (287)
+|+++||+|||++++++.++ +.+..+...+... ...+.+++...+..+.+.+
T Consensus 267 ~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~--~~~vk~l~~~l~~~~~~~e 319 (368)
T 2q58_A 267 DDICRFKLTWPLQKSFEIADEEMKLKISENYGKN--SSLVKDCYNLLKINEHYLE 319 (368)
T ss_dssp CTTTSCCCCHHHHSSTTTCCHHHHHHHHHHTTTC--HHHHHHHHHHTTHHHHHHH
T ss_pred chHhcCCcHHHHHHHHHhCCHHHHHHHHHHhCCC--HHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999864 4556666555432 2334444554554444333
No 40
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=99.93 E-value=1.4e-25 Score=202.66 Aligned_cols=129 Identities=29% Similarity=0.513 Sum_probs=101.9
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQG 80 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~G 80 (287)
|+||||+++||+++++.+ +++++.+++++..++.||.+++.+..+
T Consensus 108 laGD~Ll~~a~~ll~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~---------------------------------- 152 (295)
T 3ipi_A 108 LCGDYLIAKSIAFISPYG-EKVIQDFGKAGMDMAEGEVLDLKLEDE---------------------------------- 152 (295)
T ss_dssp HHHHHHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHC--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHch-HHHHHHHHHHHHHHHccchHHHHccCC----------------------------------
Confidence 589999999999999874 577777777777777777776654322
Q ss_pred hhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCc
Q psy17022 81 EFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160 (287)
Q Consensus 81 Q~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk 160 (287)
.+++++|++|+.+|||+||++||++|+++++.+++..+.+++||.++|++|||+||++|+++++. |
T Consensus 153 -----------~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--g- 218 (295)
T 3ipi_A 153 -----------SFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--G- 218 (295)
T ss_dssp --------------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-
T ss_pred -----------CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--C-
Confidence 25668999999999999999999999999999999999999999999999999999999998763 4
Q ss_pred cchhhhHhhhhhhhhHhhhhh
Q psy17022 161 PTAADLKLGLATAPVLFACEK 181 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ 181 (287)
+|+.+||.|+|++++++.
T Consensus 219 ---kd~~~gk~Tlp~l~al~~ 236 (295)
T 3ipi_A 219 ---KESKFTSETLPHIYMKST 236 (295)
T ss_dssp ----------CCHHHHHTTTS
T ss_pred ---CCcccCcccHHHHHHHhc
Confidence 567899999999998653
No 41
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=99.91 E-value=9.7e-24 Score=190.78 Aligned_cols=128 Identities=28% Similarity=0.380 Sum_probs=95.4
Q ss_pred hhhhhhhhhhhccCccc--hhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhh
Q psy17022 74 MTDLVQGEFMQLGSKET--ENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDF 151 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~~--~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~ 151 (287)
..+|+.||.+|+.+.+. ..+++++|..|+.+|||+||++||++|++++|.+++..+.+++||.++|++|||+||++|+
T Consensus 159 ~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~ 238 (293)
T 2j1p_A 159 TEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDV 238 (293)
T ss_dssp TTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36788888888887665 5688999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhc-hhhHHHHHHHHhhh
Q psy17022 152 ISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLG-IAFQLVDDLLDFIS 218 (287)
Q Consensus 152 ~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG-~afQi~DDlld~~~ 218 (287)
++++ |.|+|++++++.+...+ ++..+.+.+....++ ..-+.+.++.+++.
T Consensus 239 ~~~~--------------K~T~p~l~gle~a~~~a---~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~ 289 (293)
T 2j1p_A 239 TKSS--------------KLTYPKLMGLEKSREFA---EKLNTEARDQLLGFDSDKVAPLLALANYIA 289 (293)
T ss_dssp HC----------------CCCHHHHHHHHHHHHHH---HHHHHHHHHHTTTSCTTTTHHHHHHHHHHH
T ss_pred cCCc--------------cccHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9875 89999999887653332 233333333333332 12344445555543
No 42
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=99.89 E-value=3.7e-23 Score=186.44 Aligned_cols=117 Identities=18% Similarity=0.291 Sum_probs=102.1
Q ss_pred CchhHHHHHHHHHH-hcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q psy17022 1 MAGDFILAVACQMI-SRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQ 79 (287)
Q Consensus 1 l~GD~l~~~a~~~l-~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~ 79 (287)
|+||||++.||+++ ++.+ +.+++.+++++..+++||.+++.+
T Consensus 115 laGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~------------------------------------ 157 (289)
T 2azj_A 115 FITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVGALRDMYD------------------------------------ 157 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHTTTT------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHhh------------------------------------
Confidence 58999999999999 8875 467777777777777777666532
Q ss_pred hhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccC
Q psy17022 80 GEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMG 159 (287)
Q Consensus 80 GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~G 159 (287)
+++|++|+.+|||+||++||++|++++ .+++..+.+++||.++|++|||+||++|++++ |
T Consensus 158 ---------------~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~ 217 (289)
T 2azj_A 158 ---------------NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----K 217 (289)
T ss_dssp ---------------TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----C
T ss_pred ---------------HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----C
Confidence 357999999999999999999999999 98899999999999999999999999999986 4
Q ss_pred ccchhhhHhhhhhhhhHh
Q psy17022 160 KPTAADLKLGLATAPVLF 177 (287)
Q Consensus 160 k~~~~Di~~~K~t~~~l~ 177 (287)
|+ |+.+||.|+|.++
T Consensus 218 K~---dl~~gk~Tlp~l~ 232 (289)
T 2azj_A 218 VE---EIDGSAKQLFKYY 232 (289)
T ss_dssp TT---TCCTTGGGGHHHH
T ss_pred Ch---hhhcCcccHHHHH
Confidence 65 7899999999998
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=99.87 E-value=1.3e-22 Score=181.69 Aligned_cols=138 Identities=24% Similarity=0.325 Sum_probs=103.9
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAIMTDLVQG 80 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~G 80 (287)
|+||||++.||+.++++++ ++++.+++++..++.||.+++.|..+
T Consensus 114 laGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~~~~~GQ~lDl~~~~~---------------------------------- 158 (285)
T 4fp4_A 114 VASDWLIAESIKMAVNLGA-DVVTYLADVAQRLSVGQALDLEGERD---------------------------------- 158 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHTTCHH----------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhHHHHHhcccc----------------------------------
Confidence 5899999999999999865 88888888777777777776644221
Q ss_pred hhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCc
Q psy17022 81 EFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGK 160 (287)
Q Consensus 81 Q~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk 160 (287)
. |+.+|||+||++||++|+++++.+ +..+.+++||.++|++|||+||++|+.++++ .||
T Consensus 159 ----------~---------~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k 217 (285)
T 4fp4_A 159 ----------K---------AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETK 217 (285)
T ss_dssp ----------H---------HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHH
T ss_pred ----------c---------hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccC
Confidence 0 889999999999999999999999 8889999999999999999999999998765 689
Q ss_pred cchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhc
Q psy17022 161 PTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSS 220 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~ 220 (287)
++++||+++ +..+....|..+.-+..+.|+.-+.
T Consensus 218 ~~g~DI~e~--------------------------l~~~~~~~~~~~~~~~~~~~~~~~~ 251 (285)
T 4fp4_A 218 SIANEIGRY--------------------------LLKIKEHVGDAIAPFERLIKYLIGK 251 (285)
T ss_dssp HHHHHHHHH--------------------------HHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred ccHHHHHHH--------------------------HHHHHHHhcchhhhHHHHHHHHHHH
Confidence 999998866 3334445566666677777776543
No 44
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=99.80 E-value=1.6e-19 Score=163.49 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCCCh-HHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhccCC
Q psy17022 110 IANCVKASAMLGGADD-KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGA 188 (287)
Q Consensus 110 ~~~~~~~g~~la~~~~-~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~ 188 (287)
+..++...+.. +.++ ...+.+..++..+|..--+...++|+..............+..+|++.++..+|+.|++++++
T Consensus 125 l~~A~~~l~~~-~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga 203 (302)
T 3p8l_A 125 LTGAFQLLSLS-QLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQ 203 (302)
T ss_dssp HHHHHHHHHTS-SCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhc-CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCC
Confidence 45555544432 2233 334667777777654333334444444433223334456678999999999999999999999
Q ss_pred ChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCccchHHH
Q psy17022 189 DDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMI 254 (287)
Q Consensus 189 ~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~~~~~l 254 (287)
+++..+.+.+||.++|++|||+||++|+++++..+|||+|+|+++||+|||++++++.+.+..+.+
T Consensus 204 ~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~ 269 (302)
T 3p8l_A 204 TEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQ 269 (302)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876544443
No 45
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=99.80 E-value=9.4e-20 Score=165.28 Aligned_cols=128 Identities=20% Similarity=0.198 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchh
Q psy17022 127 LSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIA 206 (287)
Q Consensus 127 ~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~a 206 (287)
..+.+..++..+|..--+...++|+..............+..+|++.++..+|+.|+++++++++..+.+.+||.++|++
T Consensus 141 ~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGla 220 (309)
T 3pde_A 141 QAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLA 220 (309)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHhHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34667777777654333444445554443333344566788999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCccchHHH
Q psy17022 207 FQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMI 254 (287)
Q Consensus 207 fQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~~~~~l 254 (287)
|||+||++|+++++..+|||+|+|+++||+|||++++++.+.+..+.+
T Consensus 221 FQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~ 268 (309)
T 3pde_A 221 FQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDT 268 (309)
T ss_dssp HHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999876544443
No 46
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=99.80 E-value=2.1e-19 Score=160.78 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=90.0
Q ss_pred CchhHHHHHHHHHHhcCCChH---HHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHH-Hhhh
Q psy17022 1 MAGDFILAVACQMISRLRDND---VTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKA-IMTD 76 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~---~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~-~~~~ 76 (287)
|+||||++.||+++++..++. ....+. .++....++ +..+
T Consensus 107 laGD~Ll~~Af~~l~~~~~~~~~~~~~~~~------------------------------------~~~~~l~~a~G~~~ 150 (274)
T 3kra_B 107 LTGDGIVPFGFELLAGSVDPARTDDPDRIL------------------------------------RVIIEISRAGGPEG 150 (274)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTCTTHHHHHH------------------------------------HHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHHHHhcCCccccccHHHHH------------------------------------HHHHHHHHHHhHHH
Confidence 589999999999999987641 000000 012222222 2368
Q ss_pred hhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhh
Q psy17022 77 LVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDL 148 (287)
Q Consensus 77 ~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~ 148 (287)
|+.||++|+.+..+ .+++++|++|+.+|||+||++||++|+++++++++.++.+++||.++|++|||+||.
T Consensus 151 ~~~GQ~lDl~~~~~-~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 151 MISGLHREEEIVDG-NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHTTCCTT-SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999998766 689999999999999999999999999999999999999999999999999999998
No 47
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=99.80 E-value=2.1e-19 Score=163.49 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcCCCh-HHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhccC-
Q psy17022 110 IANCVKASAMLGGADD-KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGG- 187 (287)
Q Consensus 110 ~~~~~~~g~~la~~~~-~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~- 187 (287)
+..++.+.+...+.++ ...+.+..++..+|...-+...++|+..............+..+|++.++..+|+.|+++++
T Consensus 119 l~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~ 198 (317)
T 4f62_A 119 QTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQ 198 (317)
T ss_dssp HHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCC
Confidence 4444444433322233 24567778887776433334444444443323344556778899999999999999999999
Q ss_pred CChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCccch
Q psy17022 188 ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELN 251 (287)
Q Consensus 188 ~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~~~ 251 (287)
++++..+.+.+||.++|++|||+||++|++++++.+|||+|+|+++||+|||++++++.+.+..
T Consensus 199 a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a 262 (317)
T 4f62_A 199 VKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALV 262 (317)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999865533
No 48
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=99.79 E-value=2.4e-19 Score=163.64 Aligned_cols=144 Identities=17% Similarity=0.174 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhc--CCChH-HHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhc
Q psy17022 109 LIANCVKASAMLG--GADDK-LSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAML 185 (287)
Q Consensus 109 L~~~~~~~g~~la--~~~~~-~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~l 185 (287)
|+..++.+.+... +.+++ ..+.+..++...|+.--+...++|+..............+..+|++.++..+|+.|+++
T Consensus 123 L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~l 202 (324)
T 3ts7_A 123 LQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLA 202 (324)
T ss_dssp HHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3566666666553 33343 45677777777665444455555555543333445566789999999999999999999
Q ss_pred cC-CChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCccchH
Q psy17022 186 GG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNP 252 (287)
Q Consensus 186 a~-~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~~~~ 252 (287)
++ ++++..+.+.+||.++|++|||+||++|++++++.+|||+|+|+++||.|||++++++.+.+..+
T Consensus 203 ag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~ 270 (324)
T 3ts7_A 203 RPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAE 270 (324)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHH
Confidence 99 89999999999999999999999999999999999999999999999999999999998755433
No 49
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=99.79 E-value=2.6e-19 Score=162.33 Aligned_cols=143 Identities=19% Similarity=0.177 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhc--CCChH-HHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhcc
Q psy17022 110 IANCVKASAMLG--GADDK-LSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLG 186 (287)
Q Consensus 110 ~~~~~~~g~~la--~~~~~-~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la 186 (287)
+..++.+.+... +.+++ ..+.+..++..+|...-+...++|+..............+..+|++.++..+|+.|++++
T Consensus 118 l~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~la 197 (304)
T 3lsn_A 118 QSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALAS 197 (304)
T ss_dssp HHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 555555544433 22333 456677777776543333444444444332333445667899999999999999999999
Q ss_pred CC-ChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCccchH
Q psy17022 187 GA-DDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNP 252 (287)
Q Consensus 187 ~~-~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~~~~ 252 (287)
++ +++..+.+.+||.++|++|||+||++|++++++.+|||+|+|+++||+|||++++++.+.+..+
T Consensus 198 g~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~ 264 (304)
T 3lsn_A 198 GRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYAL 264 (304)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHH
Confidence 99 8889999999999999999999999999999999999999999999999999999998755433
No 50
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=99.79 E-value=1.4e-19 Score=165.26 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhhhccCcc-ccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchh
Q psy17022 128 SEVAFEYGRNLGIAFQLVDDLLDFISSSD-AMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIA 206 (287)
Q Consensus 128 ~~~l~~~g~~~G~afQi~dD~~d~~~~~~-~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~a 206 (287)
.+.+..++...|+.--+...++|+..... .........+..+|++.++..+|+.|+++++++++..+.+.+||.++|++
T Consensus 167 ~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlA 246 (324)
T 3uca_A 167 LKATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLA 246 (324)
T ss_dssp HHHHHHHHHHHSTTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45667777766543333444444444332 23344567789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCccchH
Q psy17022 207 FQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNP 252 (287)
Q Consensus 207 fQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~~~~ 252 (287)
|||+||++|+++++..+|||+|+|+++||+|||++++++.+.+..+
T Consensus 247 FQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~ 292 (324)
T 3uca_A 247 FQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCV 292 (324)
T ss_dssp HHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998755433
No 51
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=99.78 E-value=5e-19 Score=160.40 Aligned_cols=140 Identities=21% Similarity=0.224 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCCCh-HHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhccCC
Q psy17022 110 IANCVKASAMLGGADD-KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGA 188 (287)
Q Consensus 110 ~~~~~~~g~~la~~~~-~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~ 188 (287)
+..++.+.+...+.++ ...+.+..++..+|..--+...++|+..............+..+|++.++..+|+.|++++++
T Consensus 116 l~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~ 195 (301)
T 1rtr_A 116 LTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANV 195 (301)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCC
Confidence 5555555554422233 345667777777765444444444554433233344567789999999999999999999999
Q ss_pred ChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCcc
Q psy17022 189 DDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE 249 (287)
Q Consensus 189 ~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~ 249 (287)
+++..+.+.+||.++|++|||+||++|++++++.+|||+|+|+++||+|||++++++.+.+
T Consensus 196 ~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~ 256 (301)
T 1rtr_A 196 DDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAED 256 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987644
No 52
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=99.77 E-value=9.7e-19 Score=156.46 Aligned_cols=107 Identities=21% Similarity=0.345 Sum_probs=84.7
Q ss_pred CchhHHHHHHHHHHhcCCCh------HHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHHHHHHHHHH-
Q psy17022 1 MAGDFILAVACQMISRLRDN------DVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKAI- 73 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~------~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l~~~~~~~~- 73 (287)
|+||||++.||+++++..++ .+++. +....+++
T Consensus 110 laGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~----------------------------------------~~~l~~a~g 149 (273)
T 3qkc_B 110 LTGDGIIPFGLELMARSMDPTRNNPDRILRA----------------------------------------IIELTRVMG 149 (273)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCCCHHHHHHH----------------------------------------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCcccccHHHHHHH----------------------------------------HHHHHHHhc
Confidence 58999999999999987642 22221 22222222
Q ss_pred hhhhhhhhhhhccCccchhhhHHHHHH-HhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhh
Q psy17022 74 MTDLVQGEFMQLGSKETENERFAHYLT-KTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLD 150 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~~~~~~~~~y~~-~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d 150 (287)
..+|+.||++|+.+.. ..+ ++|++ |+.+|||+||++||++|+++++.+++..+.+++||.++|++|||+||+.+
T Consensus 150 ~~~~~~GQ~lDl~~~~--~~~-~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~~ 224 (273)
T 3qkc_B 150 SEGIVEGQYHELGLNQ--LND-LELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRS 224 (273)
T ss_dssp TTTHHHHHHHHTTCCS--SCC-HHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred hhHHHHHHHHHHhcCC--CCC-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4788889999988832 234 46665 67999999999999999999999999999999999999999999999974
No 53
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=99.77 E-value=1.6e-18 Score=156.22 Aligned_cols=142 Identities=16% Similarity=0.188 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCCCh-HHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhccCC
Q psy17022 110 IANCVKASAMLGGADD-KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGA 188 (287)
Q Consensus 110 ~~~~~~~g~~la~~~~-~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~ 188 (287)
+..++.+.+.. +.++ ...+.+..+....|+.--+...++|+..............++.+|++.++..+|+.|++++++
T Consensus 114 l~~A~~~l~~~-~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga 192 (291)
T 3npk_A 114 NTEAFLVLSHA-HLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICEL 192 (291)
T ss_dssp HHHHHHHHHTS-SSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhc-CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCC
Confidence 44455444332 2233 344566777776555444455566665443333334456778999999999999999999999
Q ss_pred ChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCccchHHH
Q psy17022 189 DDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNPMI 254 (287)
Q Consensus 189 ~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~~~~~l 254 (287)
+++..+.+.+||.++|++|||+||++|++++++.+|||.+.| +||+|||++++++.+.+..+.+
T Consensus 193 ~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~p~l~~l~~a~~~~~~~ 256 (291)
T 3npk_A 193 NNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSFVNLLGLEQAIKTKENL 256 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999876 9999999999999876544443
No 54
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=99.77 E-value=7.5e-19 Score=159.21 Aligned_cols=143 Identities=20% Similarity=0.234 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCC--Ch-HHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhcc
Q psy17022 110 IANCVKASAMLGGA--DD-KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLG 186 (287)
Q Consensus 110 ~~~~~~~g~~la~~--~~-~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la 186 (287)
+..++.+.+..... ++ ...+.+..++...|..--+...++|+..............+..+|++.++..+|+.|++++
T Consensus 124 ~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~la 203 (302)
T 3p8r_A 124 QTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAA 203 (302)
T ss_dssp HHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHc
Confidence 45555555443211 12 1345667777766533333334444443322233445667789999999999999999999
Q ss_pred C-CChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCccchH
Q psy17022 187 G-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNP 252 (287)
Q Consensus 187 ~-~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~~~~ 252 (287)
+ ++++..+.+.+||.++|++|||+||++|++++++.+|||+|+|+++||+|||++++++.+.+..+
T Consensus 204 g~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~ 270 (302)
T 3p8r_A 204 GEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAH 270 (302)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHH
Confidence 9 78888999999999999999999999999999999999999999999999999999998655433
No 55
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=99.77 E-value=9.1e-19 Score=159.25 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhc-CCC--hHHHHHHHHHHHHHhHHHHhhhhhhhhccCcc-ccCccchhhhHhhhhhhhhHhhhhhhhh
Q psy17022 109 LIANCVKASAMLG-GAD--DKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD-AMGKPTAADLKLGLATAPVLFACEKSAM 184 (287)
Q Consensus 109 L~~~~~~~g~~la-~~~--~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~-~~Gk~~~~Di~~~K~t~~~l~a~~~ga~ 184 (287)
|+..++.+.+... +.+ ....+.+..++...|..--+...++|+..... .........++.+|++.++..+|+. ++
T Consensus 123 Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~ 201 (313)
T 3lom_A 123 MQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VL 201 (313)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HH
Confidence 3556666655543 332 34566778888777643334444444444322 3334456778899999999999999 99
Q ss_pred ccC--CChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCccchH
Q psy17022 185 LGG--ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNP 252 (287)
Q Consensus 185 la~--~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~~~~ 252 (287)
+++ ++++..+.+.+||.++|++|||+||++|+++++..+|||+|+|+++||+|||++++++.+.+..+
T Consensus 202 lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~ 271 (313)
T 3lom_A 202 AAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIA 271 (313)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHH
Confidence 999 89999999999999999999999999999999999999999999999999999999998755433
No 56
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=99.77 E-value=7.7e-19 Score=161.13 Aligned_cols=142 Identities=24% Similarity=0.285 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhc-CCCh-HHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhccC
Q psy17022 110 IANCVKASAMLG-GADD-KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGG 187 (287)
Q Consensus 110 ~~~~~~~g~~la-~~~~-~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~ 187 (287)
+..++.+.+... +.++ ...+.+..++..+|..--+...++|+..............++.+|++.++..+|+.|+++++
T Consensus 159 l~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag 238 (335)
T 2h8o_A 159 LTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAG 238 (335)
T ss_dssp HHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhC
Confidence 555555554431 2233 34466677776665433333333343332222334456778999999999999999999999
Q ss_pred CChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCccch
Q psy17022 188 ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELN 251 (287)
Q Consensus 188 ~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~~~ 251 (287)
++++..+.+.+||.++|++|||+||++|++++++.+|||+|+|+++||.|||++++++.+.+..
T Consensus 239 a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a 302 (335)
T 2h8o_A 239 SNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKL 302 (335)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765433
No 57
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=99.76 E-value=1.3e-18 Score=157.67 Aligned_cols=140 Identities=22% Similarity=0.254 Sum_probs=107.4
Q ss_pred HHHHHHHHHHh--cCCCh-HHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhc-
Q psy17022 110 IANCVKASAML--GGADD-KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAML- 185 (287)
Q Consensus 110 ~~~~~~~g~~l--a~~~~-~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~l- 185 (287)
+..++.+.+.. .+.++ ...+.+..++..+|..--+...++|+..............++.+|++.++..+|+.|+++
T Consensus 118 ~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ 197 (299)
T 1rqj_A 118 QTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSA 197 (299)
T ss_dssp HHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 55566655553 23333 334667777776653333333344443332223334467788999999999999999999
Q ss_pred cCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCcc
Q psy17022 186 GGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPE 249 (287)
Q Consensus 186 a~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~ 249 (287)
++++++..+.+.+||.++|++|||+||++|++++++.+|||+|+|+++||+|||++++++.+.+
T Consensus 198 ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~ 261 (299)
T 1rqj_A 198 GDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARK 261 (299)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHH
Confidence 9888899999999999999999999999999999999999999999999999999999987544
No 58
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=99.74 E-value=8e-18 Score=152.89 Aligned_cols=140 Identities=15% Similarity=0.145 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhcCCCh-HHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhhccCC
Q psy17022 110 IANCVKASAMLGGADD-KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGA 188 (287)
Q Consensus 110 ~~~~~~~g~~la~~~~-~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~ 188 (287)
+..++.+.+. ...++ ...+.+..++...|+.--+...++|+..............++.+|++.++..+|+.|++++++
T Consensus 128 l~~Af~~l~~-~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga 206 (311)
T 3llw_A 128 NTYSFELLSN-ALLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGI 206 (311)
T ss_dssp HHHHHHHHHH-SCSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 4445544443 22333 345667777777665444444555555443333344567789999999999999999999999
Q ss_pred ChHHH-HHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCccchH
Q psy17022 189 DDKLS-EVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNP 252 (287)
Q Consensus 189 ~~~~~-~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~~~~ 252 (287)
+++.. +.+.+||.++|++|||+||++|++++++.+|||.++ ++||+|||++++++.+.+..+
T Consensus 207 ~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~--~~gK~T~p~l~~l~~a~~~~~ 269 (311)
T 3llw_A 207 KDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHL--DSAKNSFVNLLGLERANNYAQ 269 (311)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CCSCHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCccccc--ccCcchHHHHHHHHHHHHHHH
Confidence 99988 999999999999999999999999999999999987 999999999999998755433
No 59
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=99.73 E-value=1.1e-18 Score=157.58 Aligned_cols=121 Identities=25% Similarity=0.294 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhHHHHhhhhhhhhccC--ccccCccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhc
Q psy17022 127 LSEVAFEYGRNLGIAFQLVDDLLDFISS--SDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLG 204 (287)
Q Consensus 127 ~~~~l~~~g~~~G~afQi~dD~~d~~~~--~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG 204 (287)
..+.+..++..+|..--+...++|+... ...........+..+|++.++..+|+.|+++++++++ .+.+||.++|
T Consensus 133 ~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG 209 (297)
T 3m0g_A 133 RVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALG 209 (297)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHH
Confidence 4566777777776533444444444433 2223344566778999999999999999999998877 8999999999
Q ss_pred hhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCccc
Q psy17022 205 IAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPEL 250 (287)
Q Consensus 205 ~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~~ 250 (287)
++|||+||++|++++++.+|||+|+|+++||+|||++++++.+.+.
T Consensus 210 ~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~ 255 (297)
T 3m0g_A 210 LAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSR 255 (297)
T ss_dssp HHHHHHTTCC---------------------CCHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986553
No 60
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=99.70 E-value=2.9e-17 Score=147.50 Aligned_cols=87 Identities=23% Similarity=0.313 Sum_probs=67.7
Q ss_pred cchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHH
Q psy17022 161 PTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPV 240 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~ 240 (287)
.....+...|++.++..+|+.|+++++++++ .+.+||.++|++|||+||++|++++++.+|||+|+|++ |+|||+
T Consensus 166 ~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~ 240 (284)
T 2ftz_A 166 EMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVX 240 (284)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHH
Confidence 3456678999999999999999999998877 89999999999999999999999999999999999999 999999
Q ss_pred HHhhhhCccchH
Q psy17022 241 LFACEKFPELNP 252 (287)
Q Consensus 241 i~al~~~~~~~~ 252 (287)
+++++.+.+..+
T Consensus 241 l~~l~~a~~~a~ 252 (284)
T 2ftz_A 241 XVGIQXAREMAD 252 (284)
T ss_dssp HHCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999987654333
No 61
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=99.63 E-value=4.6e-16 Score=140.40 Aligned_cols=79 Identities=27% Similarity=0.437 Sum_probs=65.8
Q ss_pred hhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHH
Q psy17022 163 AADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLF 242 (287)
Q Consensus 163 ~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~ 242 (287)
...+..+|++.++..+|+.|+++++++++..+.+.+||.++|++|||+||++|+++++. || |+.+||.|||+++
T Consensus 159 y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~gk~Tlp~l~ 232 (295)
T 3ipi_A 159 YFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKFTSETLPHIY 232 (295)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----------CCHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----CcccCcccHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999874 54 6789999999999
Q ss_pred hhhhC
Q psy17022 243 ACEKF 247 (287)
Q Consensus 243 al~~~ 247 (287)
+++..
T Consensus 233 al~~~ 237 (295)
T 3ipi_A 233 MKSTS 237 (295)
T ss_dssp TTTSC
T ss_pred HHhcC
Confidence 97654
No 62
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.48 E-value=1.2e-13 Score=129.58 Aligned_cols=93 Identities=20% Similarity=0.201 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHhHHH-HHHHHHHHhhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCh
Q psy17022 47 ENERFAHYLTKTYRKTASL-IANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADD 125 (287)
Q Consensus 47 ~~~~~~~~~~~~~~kt~~l-~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~ 125 (287)
...++++|+.++..|||+| |..++..+. +..|-..|- ... .
T Consensus 228 ~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga--~~ag~~~d~----~~~--------------------------------~ 269 (395)
T 3mav_A 228 NMINFGVYKNIVIHKTAYYSFFLPIVCGM--LLAGIAVDN----LIY--------------------------------K 269 (395)
T ss_dssp GGCSHHHHHHHHHHHTHHHHTHHHHHHHH--HHTTCCTTC----THH--------------------------------H
T ss_pred ccCCHHHHHHHHHHhhhHHHHHHHHHHHH--HhcCCcchh----HHH--------------------------------H
Confidence 4458899999999999999 665555321 111111110 000 0
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhh
Q psy17022 126 KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182 (287)
Q Consensus 126 ~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~g 182 (287)
...+....+|..|-+.=-+.|= +++++.+|| +|+|+.+||.|+|++++++.+
T Consensus 270 ~l~~~g~~lG~aFQI~DDiLD~----~gd~~~~GK-~g~Dl~egK~T~p~i~al~~~ 321 (395)
T 3mav_A 270 KIEDISMLMGEYFQIHDDYLDI----FGDSTKTGK-VGSDIQNNKLTWPLIKTFELC 321 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----C---------CCCTTTTTCCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----cCCHhhhcc-cccHHhcCCchHHHHHHHHhC
Confidence 0112233344444444444443 345678899 699999999999999999864
No 63
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=99.40 E-value=8.6e-13 Score=118.68 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=67.1
Q ss_pred chhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHH
Q psy17022 162 TAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVL 241 (287)
Q Consensus 162 ~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i 241 (287)
....+..+|++.++..+|+.|++++ ++++..+.+.+||.++|++|||+||++|++++ ||+ |+++||.|+|++
T Consensus 160 ~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---dl~~gk~Tlp~l 231 (289)
T 2azj_A 160 DYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---EIDGSAKQLFKY 231 (289)
T ss_dssp CHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---TCCTTGGGGHHH
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---hhhcCcccHHHH
Confidence 3456789999999999999999999 99999999999999999999999999999985 465 899999999999
Q ss_pred H
Q psy17022 242 F 242 (287)
Q Consensus 242 ~ 242 (287)
+
T Consensus 232 ~ 232 (289)
T 2azj_A 232 Y 232 (289)
T ss_dssp H
T ss_pred H
Confidence 9
No 64
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=99.40 E-value=1.8e-13 Score=123.94 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHH
Q psy17022 50 RFAHYLTKTYRKTASLIANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSE 129 (287)
Q Consensus 50 ~~~~~~~~~~~kt~~l~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~ 129 (287)
+.++|+..+..|||+||..+++.+. +..|.- . . ..+-|..++.++++
T Consensus 141 ~~~~y~~~i~~KTa~L~~~~~~~ga--~~a~~~--------~--~--------l~~~g~~lG~aFQi------------- 187 (301)
T 2q80_A 141 TEEEYKAMVLQKTGGLFGLAVGLMQ--LFSDYK--------E--D--------LKPLLNTLGLFFQI------------- 187 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH--HTCCCC--------S--C--------CHHHHHHHHHHHHH-------------
T ss_pred CHHHHHHHHHcccHHHHHHHHHHHH--HHCCCh--------H--H--------HHHHHHHHHHHHHH-------------
Confidence 4688999999999999998887531 122210 0 0 11223334333333
Q ss_pred HHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhh
Q psy17022 130 VAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEK 181 (287)
Q Consensus 130 ~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ 181 (287)
.=-+.|=+-| ++.+||++++|+.+||.|+|++++++.
T Consensus 188 -----------~DD~ld~~~~----~~~~GK~~g~Dl~egK~T~p~i~al~~ 224 (301)
T 2q80_A 188 -----------RDDYANLHSK----EYSENKSFCEDLTEGKFSFPTIHAIWS 224 (301)
T ss_dssp -----------HHHHHHHHCC----------CTTHHHHHTCCCHHHHHHHHH
T ss_pred -----------HHHHhhhcCC----hhhhCCCccchhhcCCcHHHHHHHHHc
Confidence 2233322222 456799999999999999999999975
No 65
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=99.39 E-value=1e-12 Score=118.46 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcC--C-ChHHHHHHHHHHHHHhHHHHhhhhhhhhccCcc---ccCccchhhhHhhhhhhhhHhhhhhhh
Q psy17022 110 IANCVKASAMLGG--A-DDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD---AMGKPTAADLKLGLATAPVLFACEKSA 183 (287)
Q Consensus 110 ~~~~~~~g~~la~--~-~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~---~~Gk~~~~Di~~~K~t~~~l~a~~~ga 183 (287)
+..++...+.... . +....+.+..+...+|..--+...++|+..... .........+..+|++.++..+|+.|+
T Consensus 126 l~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga 205 (293)
T 2j1p_A 126 LSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGG 205 (293)
T ss_dssp HHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHH
Confidence 5556665555432 1 234456667777666532222333333332211 111233456789999999999999999
Q ss_pred hccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhCCChHHHHHhhhhCccchH
Q psy17022 184 MLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKFPELNP 252 (287)
Q Consensus 184 ~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~gk~Tlp~i~al~~~~~~~~ 252 (287)
++++++++..+.+.+||.++|++|||+||++|+++++ |.|+|++++++.+.+..+
T Consensus 206 ~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~--------------K~T~p~l~gle~a~~~a~ 260 (293)
T 2j1p_A 206 IIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS--------------KLTYPKLMGLEKSREFAE 260 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--------------cccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875 899999999997655433
No 66
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=99.28 E-value=7.9e-13 Score=118.33 Aligned_cols=67 Identities=22% Similarity=0.134 Sum_probs=54.8
Q ss_pred hHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhhhhccccCCCchhhHhhC
Q psy17022 166 LKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLG 234 (287)
Q Consensus 166 i~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~gK~~g~Dl~~g 234 (287)
+..+|++.++..+|+.|+++++++ +..+.+.+||.++|++|||+||++|++++++ .||++|+||+++
T Consensus 160 ~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e~ 226 (285)
T 4fp4_A 160 AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANEIGRY 226 (285)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHHHHHH
Confidence 889999999999999999999998 8889999999999999999999999998765 689999999998
No 67
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=99.27 E-value=4e-12 Score=118.11 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=62.2
Q ss_pred hhhhhhhhcCCC--chhHHHHHHHHHHHHHhHHHH-HHHHHHHhhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHH
Q psy17022 34 VQGEFMQLGSKE--TENERFAHYLTKTYRKTASLI-ANCVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLI 110 (287)
Q Consensus 34 ~~Ge~~~~~~~~--~~~~~~~~~~~~~~~kt~~l~-~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~ 110 (287)
+.||.+++.|.. ..+.+.++|+..+..||++++ ..++.. +++.+..
T Consensus 181 ~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~---g~~~ag~---------------------------- 229 (368)
T 2q58_A 181 VLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFF---GLTLSEI---------------------------- 229 (368)
T ss_dssp HHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHH---HHHHSCC----------------------------
T ss_pred hhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHH---HHHHhCc----------------------------
Confidence 569999998764 445578999999999999985 433332 1111110
Q ss_pred HHHHHHHHHhcCCC-hHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhh
Q psy17022 111 ANCVKASAMLGGAD-DKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182 (287)
Q Consensus 111 ~~~~~~g~~la~~~-~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~g 182 (287)
-..... ....+....+|..|-+.=-+.|-.. ||+.|+|+.+||.|+|++++++.+
T Consensus 230 --------~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~---------gK~~g~Dl~egK~T~p~i~al~~~ 285 (368)
T 2q58_A 230 --------QVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF---------NDSNADDICRFKLTWPLQKSFEIA 285 (368)
T ss_dssp --------CCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS---------CCCSSCTTTSCCCCHHHHSSTTTC
T ss_pred --------ccchHHHHHHHHHHHHHHHHHHHHHHHhhccc---------CCCCCchHhcCCcHHHHHHHHHhC
Confidence 000000 0111223334444444444444333 799999999999999999999853
No 68
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=98.91 E-value=1.1e-09 Score=98.98 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=46.1
Q ss_pred hhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHH
Q psy17022 163 AADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLD 215 (287)
Q Consensus 163 ~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld 215 (287)
...+..+|++.++..+|+.|++++++++ +.+.+||.++|++|||+||++|
T Consensus 159 y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD 208 (299)
T 1v4e_A 159 YLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMD 208 (299)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999999999877 8899999999999999999998
No 69
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=98.84 E-value=3.6e-09 Score=97.59 Aligned_cols=55 Identities=36% Similarity=0.561 Sum_probs=51.5
Q ss_pred chhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHh
Q psy17022 162 TAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDF 216 (287)
Q Consensus 162 ~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~ 216 (287)
....+..+|++.++..+|+.|+++++++++..+.+.+||.++|++|||+||++|+
T Consensus 175 ~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~ 229 (352)
T 3nf2_A 175 ECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGI 229 (352)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456789999999999999999999999999999999999999999999999997
No 70
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=98.84 E-value=4.7e-09 Score=95.89 Aligned_cols=55 Identities=18% Similarity=0.362 Sum_probs=51.3
Q ss_pred chhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHh
Q psy17022 162 TAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDF 216 (287)
Q Consensus 162 ~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~ 216 (287)
....+..+|++.++..+|+.|+++++++++..+.+.+||.++|++|||+||++|+
T Consensus 162 ~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~ 216 (325)
T 3aqb_B 162 AYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDY 216 (325)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788999999999999999999999999999999999999999999999997
No 71
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=98.80 E-value=5.2e-09 Score=96.43 Aligned_cols=54 Identities=41% Similarity=0.701 Sum_probs=50.3
Q ss_pred hhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHh
Q psy17022 163 AADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDF 216 (287)
Q Consensus 163 ~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~ 216 (287)
...+..+|++.++..+|+.|+++++.+++..+.+.+||.++|++|||+||++|+
T Consensus 186 y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~ 239 (348)
T 3apz_A 186 YMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDF 239 (348)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345678999999999999999999999999999999999999999999999997
No 72
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=98.79 E-value=6.1e-09 Score=95.66 Aligned_cols=56 Identities=39% Similarity=0.595 Sum_probs=51.3
Q ss_pred chhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhh
Q psy17022 162 TAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 217 (287)
Q Consensus 162 ~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~ 217 (287)
....+..+|++.++..+|+.|+++++++++..+.+.+||.++|++|||+||++|++
T Consensus 171 ~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~ 226 (341)
T 3mzv_A 171 IYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34557899999999999999999999999999999999999999999999999985
No 73
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=98.78 E-value=5.3e-09 Score=96.16 Aligned_cols=56 Identities=36% Similarity=0.442 Sum_probs=51.6
Q ss_pred chhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhh
Q psy17022 162 TAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 217 (287)
Q Consensus 162 ~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~ 217 (287)
....+..+|++.++..+|+.|+++++++++..+.+.+||.++|++|||+||++|++
T Consensus 183 ~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~ 238 (345)
T 3oyr_A 183 VYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYG 238 (345)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567899999999999999999999999999999999999999999999999985
No 74
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=6.4e-09 Score=95.25 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=51.9
Q ss_pred cchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHh
Q psy17022 161 PTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDF 216 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~ 216 (287)
.....+..+|++.++..+|+.|+++++++++..+.+.+||.++|++|||+||++|+
T Consensus 164 ~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~ 219 (334)
T 3rmg_A 164 EVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDY 219 (334)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34556789999999999999999999999999999999999999999999999996
No 75
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=98.78 E-value=7e-09 Score=95.78 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=51.5
Q ss_pred hhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhh
Q psy17022 163 AADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 217 (287)
Q Consensus 163 ~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~ 217 (287)
...+..+|++.++..+|+.|+++++++++..+.+.+||.++|++|||+||++|++
T Consensus 192 y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~ 246 (360)
T 3lmd_A 192 YTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIF 246 (360)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4456889999999999999999999999999999999999999999999999985
No 76
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=98.77 E-value=8.3e-09 Score=95.36 Aligned_cols=54 Identities=28% Similarity=0.396 Sum_probs=50.5
Q ss_pred hhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHh
Q psy17022 163 AADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDF 216 (287)
Q Consensus 163 ~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~ 216 (287)
...+..+|++.++..+|+.|+++++++++..+.+.+||.++|++|||+||++|+
T Consensus 177 y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~ 230 (358)
T 4dhd_A 177 YIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDI 230 (358)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999999999999999999997
No 77
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=98.74 E-value=9.7e-09 Score=95.23 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=51.0
Q ss_pred chhhhHhhhhhhh-hHhhhhhhhhccC-CChHHHHHHHHhhhhhchhhHHHHHHHHh
Q psy17022 162 TAADLKLGLATAP-VLFACEKSAMLGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDF 216 (287)
Q Consensus 162 ~~~Di~~~K~t~~-~l~a~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DDlld~ 216 (287)
....+..+|++++ +..+|..|+++++ ++++..+.+.+||.++|++|||+||++|+
T Consensus 206 ~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~ 262 (367)
T 1uby_A 206 RYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDC 262 (367)
T ss_dssp HHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999 9999999999999 89999999999999999999999999996
No 78
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=98.71 E-value=1.9e-08 Score=92.15 Aligned_cols=53 Identities=26% Similarity=0.502 Sum_probs=49.7
Q ss_pred hhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhh
Q psy17022 165 DLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 217 (287)
Q Consensus 165 Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~ 217 (287)
.+..+|++.++..+|+.|+++++++++..+.+.+||.++|++|||+||++|++
T Consensus 178 ~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~ 230 (334)
T 3pko_A 178 NEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYA 230 (334)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34589999999999999999999999999999999999999999999999984
No 79
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=98.69 E-value=4.8e-08 Score=89.78 Aligned_cols=58 Identities=28% Similarity=0.454 Sum_probs=53.7
Q ss_pred ccchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhh
Q psy17022 160 KPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 217 (287)
Q Consensus 160 k~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~ 217 (287)
......+..+|++.++..+|+.|+++++++++..+.+.+||.++|++|||+||++|++
T Consensus 167 ~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 167 IEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455677899999999999999999999999999999999999999999999999985
No 80
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=98.67 E-value=7e-08 Score=89.76 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHhHHH-HHHHHHHHhhhhhhhhhhhccCccchhhhHHHH
Q psy17022 20 NDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASL-IANCVKAIMTDLVQGEFMQLGSKETENERFAHY 98 (287)
Q Consensus 20 ~~~~~~~s~~~~~l~~Ge~~~~~~~~~~~~~~~~~~~~~~~kt~~l-~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y 98 (287)
..+++.++..+..++.||++++.+..+...+.++|+..+..|||++ |..+++.+. ++.|.- .+.
T Consensus 174 ~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga--~laga~------------~~~- 238 (380)
T 3lk5_A 174 ARTRDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGA--SIAGGS------------PQL- 238 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHH--HHTTCC------------HHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHH--HHcCCC------------HHH-
Confidence 4577788888899999999999988777778999999999999999 787777431 112210 000
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhh
Q psy17022 99 LTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFA 178 (287)
Q Consensus 99 ~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a 178 (287)
.-...+-|..+..++++ .=-+.|=+-|-.. +|||+++|+.+||.|+|++++
T Consensus 239 -~~~l~~~G~~lG~AFQI------------------------~DDiLd~~gd~~~----~GK~~g~Dl~egK~T~p~i~a 289 (380)
T 3lk5_A 239 -IDALLHYGHDIGIAFQL------------------------RDDLLGVFGDPAI----TGKPAGDDIREGKRTVLLALA 289 (380)
T ss_dssp -HHHHHHHHHHHHHHHHH------------------------HHHHHHHHSCHHH----HSSCTTHHHHTTCCCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHH------------------------HHHHHhccCChhh----hCCCchhhHhcCCchHHHHHH
Confidence 00112233334444333 3233322222222 289999999999999999999
Q ss_pred hhhh
Q psy17022 179 CEKS 182 (287)
Q Consensus 179 ~~~g 182 (287)
++.+
T Consensus 290 l~~~ 293 (380)
T 3lk5_A 290 LQRA 293 (380)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9864
No 81
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=98.64 E-value=2.3e-08 Score=90.82 Aligned_cols=52 Identities=27% Similarity=0.396 Sum_probs=47.3
Q ss_pred hhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHhh
Q psy17022 163 AADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFI 217 (287)
Q Consensus 163 ~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~~ 217 (287)
...+..+|++.++..+|+.|+.+++++ .+.+.+||.++|++|||+||++|++
T Consensus 155 y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~ 206 (315)
T 3tc1_A 155 YWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDIT 206 (315)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445689999999999999999999987 6789999999999999999999984
No 82
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=98.63 E-value=2.4e-08 Score=91.40 Aligned_cols=52 Identities=29% Similarity=0.301 Sum_probs=47.5
Q ss_pred hhhhHhhhhhhh-hHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHh
Q psy17022 163 AADLKLGLATAP-VLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDF 216 (287)
Q Consensus 163 ~~Di~~~K~t~~-~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~ 216 (287)
...+..+|++.+ +..+|+.|+++++++++.. +.+||.++|++|||+||++|+
T Consensus 165 y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~ 217 (330)
T 1wmw_A 165 YFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNL 217 (330)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcc
Confidence 445688999999 9999999999999888776 999999999999999999997
No 83
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=98.62 E-value=4.1e-08 Score=91.70 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=48.9
Q ss_pred chhhhHhhhhhhh-hHhhhhhhhhccCCChHH-HHHHHHhhhhhchhhHHHHHHHH
Q psy17022 162 TAADLKLGLATAP-VLFACEKSAMLGGADDKL-SEVAFEYGRNLGIAFQLVDDLLD 215 (287)
Q Consensus 162 ~~~Di~~~K~t~~-~l~a~~~ga~la~~~~~~-~~~l~~~g~~lG~afQi~DDlld 215 (287)
....+...|++.+ +..+|+.|+++++++++. .+.+.+||.++|++|||+||++|
T Consensus 227 ~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD 282 (390)
T 3dyh_A 227 NYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMD 282 (390)
T ss_dssp HHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556789999998 889999999999998875 78999999999999999999998
No 84
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=98.61 E-value=1.1e-07 Score=84.78 Aligned_cols=105 Identities=12% Similarity=-0.011 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCC----Ch-HHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhh
Q psy17022 109 LIANCVKASAMLGGA----DD-KLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSA 183 (287)
Q Consensus 109 L~~~~~~~g~~la~~----~~-~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga 183 (287)
|+..++.+.+..... +. ...+.+..+...+|..-.+...++|+..............+..+|++.++..+|+.|+
T Consensus 112 Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGa 191 (274)
T 3kra_B 112 IVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGA 191 (274)
T ss_dssp HHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666555432 12 3456677788877765566666666665433223334556789999999999999999
Q ss_pred hccCCChHHHHHHHHhhhhhchhhHHHHHH
Q psy17022 184 MLGGADDKLSEVAFEYGRNLGIAFQLVDDL 213 (287)
Q Consensus 184 ~la~~~~~~~~~l~~~g~~lG~afQi~DDl 213 (287)
++++++++..+.+.+||.++|++||++||.
T Consensus 192 ilaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 192 ILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999997
No 85
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=98.57 E-value=1.9e-07 Score=86.78 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=53.3
Q ss_pred CccchhhhHhhhhhhh-hHhhhhhhhhccC-CChHHHHHHHHhhhhhchhhHHHHHHHHh
Q psy17022 159 GKPTAADLKLGLATAP-VLFACEKSAMLGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDF 216 (287)
Q Consensus 159 Gk~~~~Di~~~K~t~~-~l~a~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DDlld~ 216 (287)
.......+..+|++++ +..+|..|+++++ ++++..+.+.+||.++|++|||+||++|+
T Consensus 210 t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~ 269 (374)
T 2qis_A 210 TEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDL 269 (374)
T ss_dssp CHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445668899999999 9999999999999 99999999999999999999999999996
No 86
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=98.56 E-value=1.2e-07 Score=84.34 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhcCC---C-hHHHHHHHHHHHHHhHHHHhhhhhhhhccCccccCccchhhhHhhhhhhhhHhhhhhhhh
Q psy17022 109 LIANCVKASAMLGGA---D-DKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAM 184 (287)
Q Consensus 109 L~~~~~~~g~~la~~---~-~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~~~~Gk~~~~Di~~~K~t~~~l~a~~~ga~ 184 (287)
|+..++.+.+..... + ...++.+..+...+|..--+...++|+.... .....-...+..+|++.++..+|+.|++
T Consensus 115 Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~-~~~~eyl~~I~~~KTa~L~~~a~~lGai 193 (273)
T 3qkc_B 115 IIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQ-LNDLELIEYVCKKKEGTLHACGAACGAI 193 (273)
T ss_dssp HHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHTTCCS-SCCHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 355666665555432 2 2345677777777754333444444444421 1222334456799999999999999999
Q ss_pred ccCCChHHHHHHHHhhhhhchhhHHHHHHH
Q psy17022 185 LGGADDKLSEVAFEYGRNLGIAFQLVDDLL 214 (287)
Q Consensus 185 la~~~~~~~~~l~~~g~~lG~afQi~DDll 214 (287)
+++++++..+.+.+||.++|++|||+||+.
T Consensus 194 laga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 194 LGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999996
No 87
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=98.55 E-value=4.4e-08 Score=90.60 Aligned_cols=51 Identities=10% Similarity=-0.056 Sum_probs=46.3
Q ss_pred hhhhHhhhhhhh-hHhhhhhhhhccCCChHH--HHHHHHhhhhhchhhHHHHHH
Q psy17022 163 AADLKLGLATAP-VLFACEKSAMLGGADDKL--SEVAFEYGRNLGIAFQLVDDL 213 (287)
Q Consensus 163 ~~Di~~~K~t~~-~l~a~~~ga~la~~~~~~--~~~l~~~g~~lG~afQi~DDl 213 (287)
...+...|++.+ +..+|+.|+++++++++. .+.+.+||.++|++|||+||+
T Consensus 203 y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~ 256 (368)
T 2her_A 203 YFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDV 256 (368)
T ss_dssp HHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688999998 899999999999999888 899999999999999999994
No 88
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=98.51 E-value=3e-07 Score=85.09 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=51.7
Q ss_pred cchhhhHhhhhhhh-hHhhhhhhhhccC-CChHHHHHHHHhhhhhchhhHHHHHHHHh
Q psy17022 161 PTAADLKLGLATAP-VLFACEKSAMLGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDF 216 (287)
Q Consensus 161 ~~~~Di~~~K~t~~-~l~a~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DDlld~ 216 (287)
.....+..+|++.+ +..+|+.|+++++ ++++..+.+.+||.++|++|||+||++|+
T Consensus 198 ~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~ 255 (362)
T 1yhl_A 198 AIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDC 255 (362)
T ss_dssp HHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567799999999 9999999999999 88889999999999999999999999997
No 89
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=98.35 E-value=5.3e-07 Score=82.71 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=45.1
Q ss_pred cchhhhHhhhhhhhhHhhhhhhhhccCCChHHHHHHHHhhhhhchhhHHHHHHHHh
Q psy17022 161 PTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDF 216 (287)
Q Consensus 161 ~~~~Di~~~K~t~~~l~a~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DDlld~ 216 (287)
.....+..+|++.++..+|+.|+.+++.++ ..+.+.+||.++|++|||+||++|+
T Consensus 165 ~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~ 219 (340)
T 2e8v_A 165 EMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNL 219 (340)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667899999999999999999999887 5788999999999999999999997
No 90
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=98.34 E-value=1.2e-06 Score=81.92 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=51.5
Q ss_pred cchhhhHhhhhhhh-hHhhhhhhhhccCCChHH--HHHHHHhhhhhchhhHHHHHHHHhh
Q psy17022 161 PTAADLKLGLATAP-VLFACEKSAMLGGADDKL--SEVAFEYGRNLGIAFQLVDDLLDFI 217 (287)
Q Consensus 161 ~~~~Di~~~K~t~~-~l~a~~~ga~la~~~~~~--~~~l~~~g~~lG~afQi~DDlld~~ 217 (287)
.....+...|++.+ +..+|..|+++++++++. .+.+.+||.++|++|||+||++|++
T Consensus 233 ~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~ 292 (395)
T 2ihi_A 233 GVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44566799999998 889999999999999888 8999999999999999999999984
No 91
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=87.06 E-value=0.42 Score=37.28 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=38.6
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhhhhhhcC
Q psy17022 1 MAGDFILAVACQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGS 43 (287)
Q Consensus 1 l~GD~l~~~a~~~l~~~~~~~~~~~~s~~~~~l~~Ge~~~~~~ 43 (287)
|+|||+=+..+.++|+.+....++.||+++..+.+--...+.-
T Consensus 74 LaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl~~~ 116 (147)
T 3aqb_A 74 LSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIRATI 116 (147)
T ss_dssp HHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred eehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6899999999999999999999999999999999887775543
No 92
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=77.64 E-value=14 Score=33.17 Aligned_cols=93 Identities=13% Similarity=0.011 Sum_probs=61.9
Q ss_pred HHHHHhhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhh
Q psy17022 69 CVKAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDL 148 (287)
Q Consensus 69 ~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~ 148 (287)
.....+..|..|-..|+. ..-.+++++..=++.=.|....+++.+-..-...++ ........+.++|.++|+.|=+
T Consensus 115 ~i~~~~~~m~~gm~~dl~---~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~-~~~~~~~~A~~lG~AlQltNil 190 (343)
T 3vj8_A 115 VIADICRRMGIGMAEFLD---KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDP-LVGEDTERANSMGLFLQKTNII 190 (343)
T ss_dssp HHHHHHHHHHHHHHHGGG---CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCH-HHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc---CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccc-hhhhHHHHHHHHHHHHHHHHHH
Confidence 334445667777777885 244577777777777777777777666554332222 2334567899999999999988
Q ss_pred hhhccCccccCccchhhhHhhhhhhhhH
Q psy17022 149 LDFISSSDAMGKPTAADLKLGLATAPVL 176 (287)
Q Consensus 149 ~d~~~~~~~~Gk~~~~Di~~~K~t~~~l 176 (287)
.|+ +.|...|..=+|..
T Consensus 191 RDv-----------~eD~~~gR~YlP~e 207 (343)
T 3vj8_A 191 RDY-----------LEDQQGGREFWPQE 207 (343)
T ss_dssp HTH-----------HHHHHTTCCCSCHH
T ss_pred HHh-----------HHHHhCCCeeCCHH
Confidence 886 45566666655554
No 93
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=72.09 E-value=26 Score=30.38 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=47.9
Q ss_pred HHhhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhh
Q psy17022 72 AIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDF 151 (287)
Q Consensus 72 ~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~ 151 (287)
.....|+.|...|+... .-.|++++..=++.=.|....+++.+- +..+. +.....+.++|.++|+.|=+.|+
T Consensus 108 ~~~~~li~g~~~Dl~~~--~~~t~~dL~~Yc~~vAg~VG~l~~~l~---g~~~~---~~~~~~A~~lG~AlQltNilRDv 179 (293)
T 3acx_A 108 QSFYNLIDTVYKDQHFT--MFETDAELFGYCYGVAGTVGEVLTPIL---SDHET---HQTYDVARRLGESLQLINILRDV 179 (293)
T ss_dssp HHHHHHHHHHHHHTTCC--CCSSHHHHHHHHHHHTHHHHHHHHHHH---CSSCC---HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhhHHHHHHHHHHh---CCCCc---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33568888999998753 334667776666666666655555543 22221 23567899999999999877775
No 94
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=61.79 E-value=40 Score=29.32 Aligned_cols=69 Identities=10% Similarity=0.130 Sum_probs=44.1
Q ss_pred hhhhhhhhhhhccCccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhh
Q psy17022 74 MTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDF 151 (287)
Q Consensus 74 ~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~ 151 (287)
...|+.|..+|+... .-.+++++..=++.=.|+...+++. +++..+++ ...++.++|.++|+.|=+.|+
T Consensus 106 ~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv 174 (294)
T 4hd1_A 106 FLRLIEANRRDQRKH--TYDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDI 174 (294)
T ss_dssp HHHHHHHHHHHHHCS--BCCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHhccccC--CCCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 567888999998664 3345666655555545555444333 33333433 345788899999999888886
No 95
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=44.52 E-value=1.3e+02 Score=26.96 Aligned_cols=65 Identities=11% Similarity=-0.119 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHH--HHHHHHHHHHhHHHHhhhhhhhhccCc
Q psy17022 91 ENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLS--EVAFEYGRNLGIAFQLVDDLLDFISSS 155 (287)
Q Consensus 91 ~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~--~~l~~~g~~~G~afQi~dD~~d~~~~~ 155 (287)
..++.++|+.+...-+|....++...-+.--..+++.. ..+.++-...+...-+.||+..+..+.
T Consensus 204 ~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S~~kE~ 270 (382)
T 3kb9_A 204 IVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKEI 270 (382)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999998766666543333221111112334333 246777888899999999999986543
No 96
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=37.61 E-value=2e+02 Score=24.80 Aligned_cols=80 Identities=11% Similarity=-0.050 Sum_probs=44.6
Q ss_pred hhhhhhhhhccCccc-hhh-hHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHH--HHHHHHHHHHhHHHHhhhhhhhh
Q psy17022 76 DLVQGEFMQLGSKET-ENE-RFAHYLTKTYRKTASLIANCVKASAMLGGADDKLS--EVAFEYGRNLGIAFQLVDDLLDF 151 (287)
Q Consensus 76 ~~~~GQ~~d~~~~~~-~~~-~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~--~~l~~~g~~~G~afQi~dD~~d~ 151 (287)
.++.+-..+..|... ..+ +.++|+.+...-.|....++....+.-...++... ..+..+-...+...-+.||+..+
T Consensus 145 ~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl~S~ 224 (337)
T 1ps1_A 145 NYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDVNLLLNDIASL 224 (337)
T ss_dssp HHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444444444332 367 89999987666665554333222222122233332 24567888888899999999988
Q ss_pred ccCc
Q psy17022 152 ISSS 155 (287)
Q Consensus 152 ~~~~ 155 (287)
..+.
T Consensus 225 ~kE~ 228 (337)
T 1ps1_A 225 EKEE 228 (337)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 97
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=29.91 E-value=2.6e+02 Score=23.81 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=47.0
Q ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCc
Q psy17022 91 ENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSS 155 (287)
Q Consensus 91 ~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~ 155 (287)
..++.++|+.+...-+|....++...-+.=-..+++..+.+..+-...+...-+.||+..+..+.
T Consensus 164 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE~ 228 (320)
T 3bny_A 164 RPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKEL 228 (320)
T ss_dssp CCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 47899999998888877654443332222223456666678888899999999999999987654
No 98
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=29.37 E-value=2.5e+02 Score=23.54 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=47.1
Q ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhHHHHhhhhhhhhccCc
Q psy17022 91 ENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSS 155 (287)
Q Consensus 91 ~~~~~~~y~~~~~~KTg~L~~~~~~~g~~la~~~~~~~~~l~~~g~~~G~afQi~dD~~d~~~~~ 155 (287)
..++.++|+.+-..-+|..+.++...-+.=...+++..+.+.++....+...-+.||+..+..+.
T Consensus 150 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~ 214 (300)
T 1di1_A 150 SIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEE 214 (300)
T ss_dssp CCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 47899999998777777654444333222223456666677889999999999999999997764
Done!