RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17022
         (287 letters)



>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 280

 Score = 57.0 bits (136), Expect = 5e-10
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 179 CEKSAMLGG-ADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLAT 237
              +  L    + +L E  +  G  +G  +Q+ DD++DF             DLK G+A+
Sbjct: 163 FGLALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGF-LDLKNGVAS 221

Query: 238 APVLFACEKFPELNPMIMRRFQEPGDVEKAFEFVHKSQGLEQTKFLARKH 287
            P++ A EKFPE   M   R     D      F+ +   L++ +   +  
Sbjct: 222 FPLVTAMEKFPEARQMFENR-----DWSGLMSFMREKGILKECEETLKVL 266



 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 7/121 (5%)

Query: 97  HYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSD 156
            YL     K+ +L    ++  A+L G      E  +  G  +G  +Q+ DD++DF     
Sbjct: 150 EYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGMEK 206

Query: 157 AMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDF 216
                   DLK G+A+ P++ A EK      A        +    +      ++ +  + 
Sbjct: 207 IGKDGF-LDLKNGVASFPLVTAMEKFP---EARQMFENRDWSGLMSFMREKGILKECEET 262

Query: 217 I 217
           +
Sbjct: 263 L 263


>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
           (geranyltranstransferase) {Escherichia coli [TaxId:
           562]}
          Length = 299

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 18/211 (8%)

Query: 11  CQMISRLRDNDVTLTLSQIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCV 70
                        +     +  L           E  +      +++    +        
Sbjct: 98  LPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASG------- 150

Query: 71  KAIMTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEV 130
              +  +  G+ + L + E ++            KT +LI   V+  A+  G   + +  
Sbjct: 151 ---IAGMCGGQALDLDA-EGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALP 206

Query: 131 AF-EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGAD 189
              +Y  ++G+AFQ+ DD+LD +  +  +GK   AD +LG +T P L   E++       
Sbjct: 207 VLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQAR---KKA 263

Query: 190 DKLSEVAFEYGRNLG---IAFQLVDDLLDFI 217
             L + A +  + L    +    ++ L D+I
Sbjct: 264 RDLIDDARQSLKQLAEQSLDTSALEALADYI 294



 Score = 36.9 bits (84), Expect = 0.002
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 9/173 (5%)

Query: 83  MQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEYGRNL---- 138
           +     +           K     A L  + ++  A    +D  + EV+     ++    
Sbjct: 86  LPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISEL 145

Query: 139 ----GIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKSAMLGGADDKLSE 194
               GIA       LD  +    +       +      A +  A    A+  G   + + 
Sbjct: 146 ASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRAL 205

Query: 195 VAF-EYGRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEK 246
               +Y  ++G+AFQ+ DD+LD +  +  +GK   AD +LG +T P L   E+
Sbjct: 206 PVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQ 258


>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
           (geranyltranstransferase) {Staphylococcus aureus [TaxId:
           1280]}
          Length = 290

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 75  TDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANCVKASAMLGGADDKLSEVAFEY 134
             +V G+ + +   E +             KT +L+   V ++A +   DD   E    Y
Sbjct: 147 VGMVGGQMLDM-QSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESY 205

Query: 135 GRNLGIAFQLVDDLLDFISSSDAMGKPTAADLKLGLATAPVLFACEKS 182
             +LG+ FQ+ DDLLD       +GK   +DL+   +T   L   + +
Sbjct: 206 SYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGA 253



 Score = 31.2 bits (69), Expect = 0.12
 Identities = 23/76 (30%), Positives = 34/76 (44%)

Query: 171 ATAPVLFACEKSAMLGGADDKLSEVAFEYGRNLGIAFQLVDDLLDFISSSDAMGKPTAAD 230
             A + FA   +A +   DD   E    Y  +LG+ FQ+ DDLLD       +GK   +D
Sbjct: 177 TGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSD 236

Query: 231 LKLGLATAPVLFACEK 246
           L+   +T   L   + 
Sbjct: 237 LENNKSTYVSLLGKDG 252


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 956,402
Number of extensions: 40917
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 7
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)