BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17024
(132 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|91084331|ref|XP_972583.1| PREDICTED: similar to AGAP012380-PA [Tribolium castaneum]
Length = 137
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/132 (72%), Positives = 110/132 (83%), Gaps = 4/132 (3%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M +TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGG-PPQRG 119
+YIRGSKIRFLILPDMLKNAPMFK + KAG AGRGKS ILRAQAARGRGRG P RG
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKKQ--TKAGTAGRGKSAILRAQAARGRGRGANPAVRG 118
Query: 120 GRGG-WGGPSRG 130
GRGG W P +G
Sbjct: 119 GRGGAWQAPGQG 130
>gi|270008821|gb|EFA05269.1| hypothetical protein TcasGA2_TC015424 [Tribolium castaneum]
Length = 152
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/147 (65%), Positives = 110/147 (74%), Gaps = 19/147 (12%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M +TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQ--------------- 105
+YIRGSKIRFLILPDMLKNAPMFK + KAG AGRGKS ILRAQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKKQ--TKAGTAGRGKSAILRAQGLAVLRVEFWLIVFS 118
Query: 106 AARGRGRGG-PPQRGGRGG-WGGPSRG 130
AARGRGRG P RGGRGG W P +G
Sbjct: 119 AARGRGRGANPAVRGGRGGAWQAPGQG 145
>gi|225714524|gb|ACO13108.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
gi|290462385|gb|ADD24240.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
gi|290563060|gb|ADD38924.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
Length = 138
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/119 (71%), Positives = 100/119 (84%), Gaps = 3/119 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET NG+++RG+L+EAEDNMNC M+ V+VT RDG V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGK---QGNKAGAAGRGKSGILRAQAARGRGRGGPP 116
IYIRGSKIRF+ILPDMLKNAPMFK +G+ +AGRGKS ILR QAARGRGR GPP
Sbjct: 61 IYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPASAGRGKSAILREQAARGRGRAGPP 119
>gi|307192020|gb|EFN75404.1| Small nuclear ribonucleoprotein Sm D3 [Harpegnathos saltator]
Length = 143
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 100/118 (84%), Gaps = 1/118 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M ++TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQR 118
+YIRGSKIRFLILPDMLKNAPMFK G +G AGRGKS ILRAQ ARGRGRG QR
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQ-ARGRGRGQQHQR 117
>gi|156550773|ref|XP_001605596.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Nasonia
vitripennis]
Length = 142
Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 98/113 (86%), Gaps = 1/113 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M ++TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+YIRGSKIRFLILPDMLKNAPMFK G +G AGRGKS ILRAQ ARGRGRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQ-ARGRGRG 112
>gi|307192021|gb|EFN75405.1| Small nuclear ribonucleoprotein Sm D3 [Harpegnathos saltator]
Length = 142
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 98/113 (86%), Gaps = 1/113 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M ++TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+YIRGSKIRFLILPDMLKNAPMFK G +G AGRGKS ILRAQ ARGRGRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQ-ARGRGRG 112
>gi|307185014|gb|EFN71243.1| Small nuclear ribonucleoprotein Sm D3 [Camponotus floridanus]
Length = 142
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 98/113 (86%), Gaps = 1/113 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M ++TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGQVGQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+YIRGSKIRFLILPDMLKNAPMFK G +G AGRGKS ILRAQ ARGRGRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQ-ARGRGRG 112
>gi|332028142|gb|EGI68193.1| Small nuclear ribonucleoprotein Sm D3 [Acromyrmex echinatior]
Length = 141
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 98/113 (86%), Gaps = 1/113 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M ++TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGQVGQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+YIRGSKIRFLILPDMLKNAPMFK G +G AGRGKS ILRAQ ARGRGRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQ-ARGRGRG 112
>gi|332028955|gb|EGI68973.1| Small nuclear ribonucleoprotein Sm D3 [Acromyrmex echinatior]
Length = 142
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 98/113 (86%), Gaps = 1/113 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M ++TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGQVGQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+YIRGSKIRFLILPDMLKNAPMFK G +G AGRGKS ILRAQ ARGRGRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQ-ARGRGRG 112
>gi|383853962|ref|XP_003702491.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Megachile
rotundata]
Length = 142
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/113 (73%), Positives = 97/113 (85%), Gaps = 1/113 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M ++TVT+RDG+ + N
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGREVELEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+YIRGSKIRFLILPDMLKNAPMFK G +G AGRGKS ILRAQ ARGRGRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQ-ARGRGRG 112
>gi|170038404|ref|XP_001847040.1| small nuclear ribonucleoprotein SM D3 [Culex quinquefasciatus]
gi|167882083|gb|EDS45466.1| small nuclear ribonucleoprotein SM D3 [Culex quinquefasciatus]
Length = 155
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/109 (77%), Positives = 96/109 (88%), Gaps = 1/109 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M +TVTFRDG+ + N
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQLTVTFRDGRTANLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARG 109
+YIRGSKIRFLILPDMLKNAPMFK KQG K+G AGRGKS ILRAQAARG
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFK-KQGAKSGTAGRGKSAILRAQAARG 108
>gi|340729743|ref|XP_003403155.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Bombus
terrestris]
gi|350411432|ref|XP_003489349.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Bombus
impatiens]
Length = 142
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/113 (73%), Positives = 96/113 (84%), Gaps = 1/113 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGH ITCET G+++RGKL+EAEDNMNC M ++TVT+RDG+ + N
Sbjct: 1 MSIGVPIKVLHEAEGHTITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGREAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+YIRGSKIRFLILPDMLKNAPMFK G +G AGRGKS ILRAQ ARGRGRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQ-ARGRGRG 112
>gi|405976315|gb|EKC40827.1| Small nuclear ribonucleoprotein Sm D3 [Crassostrea gigas]
Length = 131
Score = 174 bits (442), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 80/107 (74%), Positives = 94/107 (87%), Gaps = 1/107 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCETT G+++RGKLVEAEDNMNC M+ +TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETTTGEVYRGKLVEAEDNMNCQMSAITVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAA 107
+Y+RGSKIRFLILPDMLKNAPMFK QG K G+A RGKS ILR QAA
Sbjct: 61 VYLRGSKIRFLILPDMLKNAPMFKRVQG-KGGSANRGKSAILRTQAA 106
>gi|110758613|ref|XP_001120143.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Apis mellifera]
gi|380017261|ref|XP_003692578.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 1
[Apis florea]
gi|380017263|ref|XP_003692579.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 2
[Apis florea]
Length = 142
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/113 (73%), Positives = 95/113 (84%), Gaps = 1/113 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGH ITCET G+++RGKL+EAEDNMNC M ++TVT+RDG + N
Sbjct: 1 MSIGVPIKVLHEAEGHTITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGHEVQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+YIRGSKIRFLILPDMLKNAPMFK G +G AGRGKS ILRAQ ARGRGRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQ-ARGRGRG 112
>gi|332376959|gb|AEE63619.1| unknown [Dendroctonus ponderosae]
Length = 138
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 78/107 (72%), Positives = 93/107 (86%), Gaps = 2/107 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LH+AEGHI+TCET G+++RGKL+EAEDNMNC + +TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHDAEGHIVTCETITGEVYRGKLIEAEDNMNCQLTQITVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPMFK + KAG AGRGKSGILRAQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKKQ--TKAGVAGRGKSGILRAQVA 105
>gi|322787518|gb|EFZ13606.1| hypothetical protein SINV_14465 [Solenopsis invicta]
Length = 115
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 90/105 (85%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGH ITCET G+++RGKL+EAEDNMNC M ++TVT+RDG+V + N
Sbjct: 11 MSIGVPIKVLHEAEGHTITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLEN 70
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPMFK G +G AGRGKS ILRAQ
Sbjct: 71 VYIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQ 115
>gi|389610295|dbj|BAM18759.1| small ribonucleoprotein particle protein SmD3 [Papilio xuthus]
Length = 130
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 93/105 (88%), Gaps = 2/105 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGH++TCET G+++RGKL+EAEDNMNC M VTVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHVVTCETITGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPMFK +QGNK +AGRGKS ILRAQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFK-RQGNKP-SAGRGKSAILRAQ 103
>gi|432888006|ref|XP_004075020.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like, partial
[Oryzias latipes]
Length = 117
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 97/115 (84%), Gaps = 2/115 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQ-AARGRGRG 113
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ AA+ +GRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQGAAKEKGRG 115
>gi|357631535|gb|EHJ79005.1| hypothetical protein KGM_15381 [Danaus plexippus]
Length = 130
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 92/105 (87%), Gaps = 2/105 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGH++TCET G+++RGKL+EAEDNMNC M VTVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPMFK +QGNK AGRGKS ILRAQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFK-RQGNKP-TAGRGKSAILRAQ 103
>gi|58393584|ref|XP_320178.2| AGAP012380-PA [Anopheles gambiae str. PEST]
gi|55234277|gb|EAA00211.2| AGAP012380-PA [Anopheles gambiae str. PEST]
Length = 143
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/102 (74%), Positives = 89/102 (87%), Gaps = 1/102 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGH++TCET G+++RGKL+EAEDNMNC M +TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHVVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVGNLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGIL 102
+YIRGSKIRFLILPDMLKNAPMFK KQG K G AGRGKS IL
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFK-KQGAKTGTAGRGKSAIL 101
>gi|157129367|ref|XP_001661657.1| small nuclear ribonucleoprotein sm d3 [Aedes aegypti]
gi|108872253|gb|EAT36478.1| AAEL011433-PA [Aedes aegypti]
Length = 147
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/102 (74%), Positives = 89/102 (87%), Gaps = 1/102 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M +TVT+RDG+ + N
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQLTVTYRDGRTSNLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGIL 102
+YIRGSKIRF+ILPDMLKNAPMFK KQG KAG AGRGKS IL
Sbjct: 61 VYIRGSKIRFMILPDMLKNAPMFK-KQGAKAGTAGRGKSAIL 101
>gi|24652901|ref|NP_725106.1| small ribonucleoprotein particle protein SmD3 [Drosophila
melanogaster]
gi|194883784|ref|XP_001975977.1| GG20251 [Drosophila erecta]
gi|195333626|ref|XP_002033491.1| GM21338 [Drosophila sechellia]
gi|195485512|ref|XP_002091120.1| GE12410 [Drosophila yakuba]
gi|195551839|ref|XP_002076307.1| GD15400 [Drosophila simulans]
gi|13124554|sp|O44437.1|SMD3_DROME RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|2708715|gb|AAB92621.1| small nuclear ribonucleoprotein Sm D3 [Drosophila melanogaster]
gi|7303511|gb|AAF58566.1| small ribonucleoprotein particle protein SmD3 [Drosophila
melanogaster]
gi|21064481|gb|AAM29470.1| RE39820p [Drosophila melanogaster]
gi|190659164|gb|EDV56377.1| GG20251 [Drosophila erecta]
gi|194125461|gb|EDW47504.1| GM21338 [Drosophila sechellia]
gi|194177221|gb|EDW90832.1| GE12410 [Drosophila yakuba]
gi|194201956|gb|EDX15532.1| GD15400 [Drosophila simulans]
gi|220948494|gb|ACL86790.1| SmD3-PA [synthetic construct]
gi|220957770|gb|ACL91428.1| SmD3-PA [synthetic construct]
Length = 151
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/107 (71%), Positives = 90/107 (84%), Gaps = 1/107 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M +TVT+RDG+ + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGN-KAGAAGRGKSGILRAQA 106
+YIRGSKIRFLILPDMLKNAPMFK + G G AGRGK+ ILRAQA
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAILRAQA 107
>gi|47211785|emb|CAF93753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 91/108 (84%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108
>gi|348513729|ref|XP_003444394.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Oreochromis
niloticus]
Length = 127
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 91/108 (84%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108
>gi|4759160|ref|NP_004166.1| small nuclear ribonucleoprotein Sm D3 [Homo sapiens]
gi|13385598|ref|NP_080371.1| small nuclear ribonucleoprotein Sm D3 [Mus musculus]
gi|56119060|ref|NP_001007839.1| small nuclear ribonucleoprotein Sm D3 [Gallus gallus]
gi|62859245|ref|NP_001017093.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Xenopus
(Silurana) tropicalis]
gi|148230601|ref|NP_001084936.1| small nuclear ribonucleoprotein Sm D3 [Xenopus laevis]
gi|302563765|ref|NP_001180981.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|343478171|ref|NP_001230355.1| small nuclear ribonucleoprotein Sm D3 [Sus scrofa]
gi|73995845|ref|XP_849660.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Canis lupus
familiaris]
gi|109093572|ref|XP_001096170.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 1
[Macaca mulatta]
gi|109509970|ref|XP_001079870.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
gi|126344584|ref|XP_001362481.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Monodelphis
domestica]
gi|149632566|ref|XP_001509901.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like
[Ornithorhynchus anatinus]
gi|149720126|ref|XP_001489110.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Equus
caballus]
gi|291412675|ref|XP_002722599.1| PREDICTED: small nuclear ribonucleoprotein polypeptide D3
[Oryctolagus cuniculus]
gi|296191500|ref|XP_002743645.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Callithrix
jacchus]
gi|297708452|ref|XP_002830980.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 1 [Pongo
abelii]
gi|301779389|ref|XP_002925102.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Ailuropoda
melanoleuca]
gi|332263674|ref|XP_003280877.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Nomascus
leucogenys]
gi|344294995|ref|XP_003419200.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Loxodonta
africana]
gi|348584590|ref|XP_003478055.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cavia
porcellus]
gi|392355294|ref|XP_003751996.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
gi|395753126|ref|XP_003779546.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 2 [Pongo
abelii]
gi|395753128|ref|XP_003779547.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 3 [Pongo
abelii]
gi|395861839|ref|XP_003803182.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Otolemur
garnettii]
gi|397469575|ref|XP_003806425.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Pan paniscus]
gi|410055702|ref|XP_003953897.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 1 [Pan
troglodytes]
gi|410055704|ref|XP_003953898.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 2 [Pan
troglodytes]
gi|410976969|ref|XP_003994885.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Felis catus]
gi|426247570|ref|XP_004017554.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Ovis aries]
gi|426393867|ref|XP_004063231.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Gorilla gorilla
gorilla]
gi|51338667|sp|P62318.1|SMD3_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|54039609|sp|P62323.1|SMD3_XENLA RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|61246343|sp|P62320.1|SMD3_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|315583600|pdb|3PGW|Z Chain Z, Crystal Structure Of Human U1 Snrnp
gi|315583609|pdb|3PGW|W Chain W, Crystal Structure Of Human U1 Snrnp
gi|332639436|pdb|2Y9A|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639443|pdb|2Y9A|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639450|pdb|2Y9A|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639460|pdb|2Y9B|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639467|pdb|2Y9B|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639474|pdb|2Y9B|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639484|pdb|2Y9C|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639491|pdb|2Y9C|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639498|pdb|2Y9C|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639508|pdb|2Y9D|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639515|pdb|2Y9D|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639522|pdb|2Y9D|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|600750|gb|AAA57034.1| Sm D3 [Homo sapiens]
gi|12653375|gb|AAH00457.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo sapiens]
gi|12837822|dbj|BAB23963.1| unnamed protein product [Mus musculus]
gi|12839911|dbj|BAB24705.1| unnamed protein product [Mus musculus]
gi|12859667|dbj|BAB31729.1| unnamed protein product [Mus musculus]
gi|13111955|gb|AAH03150.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo sapiens]
gi|47122949|gb|AAH70616.1| MGC81359 protein [Xenopus laevis]
gi|47678697|emb|CAG30469.1| SNRPD3 [Homo sapiens]
gi|53130412|emb|CAG31535.1| hypothetical protein RCJMB04_7j2 [Gallus gallus]
gi|74227850|dbj|BAE35738.1| unnamed protein product [Mus musculus]
gi|89266931|emb|CAJ81806.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Xenopus
(Silurana) tropicalis]
gi|90085617|dbj|BAE91549.1| unnamed protein product [Macaca fascicularis]
gi|109451504|emb|CAK54613.1| SNRPD3 [synthetic construct]
gi|109452100|emb|CAK54912.1| SNRPD3 [synthetic construct]
gi|119580074|gb|EAW59670.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo sapiens]
gi|148699966|gb|EDL31913.1| small nuclear ribonucleoprotein D3, isoform CRA_b [Mus musculus]
gi|149043764|gb|EDL97215.1| rCG60635, isoform CRA_b [Rattus norvegicus]
gi|170285144|gb|AAI61305.1| hypothetical protein LOC549847 [Xenopus (Silurana) tropicalis]
gi|197129341|gb|ACH45839.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197129342|gb|ACH45840.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197129343|gb|ACH45841.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197692199|dbj|BAG70063.1| small nuclear ribonucleoprotein polypeptide D3 [Homo sapiens]
gi|197692447|dbj|BAG70187.1| small nuclear ribonucleoprotein polypeptide D3 [Homo sapiens]
gi|208965532|dbj|BAG72780.1| small nuclear ribonucleoprotein D3 polypeptide [synthetic
construct]
gi|296478296|tpg|DAA20411.1| TPA: small nuclear ribonucleoprotein D3 polypeptide 18kDa [Bos
taurus]
gi|355563528|gb|EHH20090.1| hypothetical protein EGK_02876 [Macaca mulatta]
gi|355784846|gb|EHH65697.1| hypothetical protein EGM_02515 [Macaca fascicularis]
gi|380815844|gb|AFE79796.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815846|gb|AFE79797.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815848|gb|AFE79798.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815850|gb|AFE79799.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815852|gb|AFE79800.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|383420997|gb|AFH33712.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|384940658|gb|AFI33934.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|387018114|gb|AFJ51175.1| Small nuclear ribonucleoprotein D3 polypeptide [Crotalus
adamanteus]
gi|410211528|gb|JAA02983.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410264204|gb|JAA20068.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410264206|gb|JAA20069.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410302836|gb|JAA30018.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|417395981|gb|JAA45024.1| Putative small nuclear ribonucleoprotein sm d3 [Desmodus rotundus]
gi|432095017|gb|ELK26406.1| Small nuclear ribonucleoprotein Sm D3 [Myotis davidii]
gi|449281570|gb|EMC88617.1| Small nuclear ribonucleoprotein Sm D3 [Columba livia]
Length = 126
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 91/108 (84%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108
>gi|148227688|ref|NP_001079359.1| uncharacterized protein LOC379046 [Xenopus laevis]
gi|27371312|gb|AAH40973.1| MGC52856 protein [Xenopus laevis]
gi|133736997|gb|AAI33764.1| MGC52856 protein [Xenopus laevis]
Length = 126
Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 91/108 (84%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGH++TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108
>gi|443687679|gb|ELT90579.1| hypothetical protein CAPTEDRAFT_221674 [Capitella teleta]
Length = 135
Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 92/105 (87%), Gaps = 3/105 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCETT+G+++RGKLVEAEDNMNC MA++TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETTSGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFK---GKQGNKAGAAGRGKSGIL 102
++IRGSKIRFLILPDMLKNAPMFK GK G+ AGRGKS IL
Sbjct: 61 VFIRGSKIRFLILPDMLKNAPMFKRVVGKGGHPGATAGRGKSAIL 105
>gi|195455442|ref|XP_002074722.1| GK23009 [Drosophila willistoni]
gi|194170807|gb|EDW85708.1| GK23009 [Drosophila willistoni]
Length = 150
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/106 (71%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M +TVT+RDG+ + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGN-KAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPMFK + G G AGRGK+ ILRAQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAILRAQ 106
>gi|195384527|ref|XP_002050966.1| GJ19907 [Drosophila virilis]
gi|194145763|gb|EDW62159.1| GJ19907 [Drosophila virilis]
Length = 151
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/106 (71%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M +TVT+RDG+ + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGN-KAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPMFK + G G AGRGK+ ILRAQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAILRAQ 106
>gi|195030021|ref|XP_001987867.1| GH19718 [Drosophila grimshawi]
gi|195120652|ref|XP_002004838.1| GI20137 [Drosophila mojavensis]
gi|193903867|gb|EDW02734.1| GH19718 [Drosophila grimshawi]
gi|193909906|gb|EDW08773.1| GI20137 [Drosophila mojavensis]
Length = 151
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/106 (71%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M +TVT+RDG+ + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGN-KAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPMFK + G G AGRGK+ ILRAQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAILRAQ 106
>gi|444708595|gb|ELW49650.1| Small nuclear ribonucleoprotein Sm D3 [Tupaia chinensis]
Length = 112
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 74/107 (69%), Positives = 91/107 (85%), Gaps = 1/107 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQA 106
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQA
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQA 107
>gi|241690470|ref|XP_002411764.1| small nuclear ribonucleoprotein Sm D3, putative [Ixodes scapularis]
gi|215504603|gb|EEC14097.1| small nuclear ribonucleoprotein Sm D3, putative [Ixodes scapularis]
Length = 122
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 77/104 (74%), Positives = 90/104 (86%), Gaps = 3/104 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKLVEAEDNMNC MA++TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNK--AGAAGRGKSGIL 102
+YIRGSKIRFLILPDMLKNAPMFK K G K +AGRGKS IL
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFK-KAGTKTATASAGRGKSAIL 103
>gi|240848533|ref|NP_001155808.1| small nuclear ribonucleoprotein Sm D3 [Acyrthosiphon pisum]
gi|239789870|dbj|BAH71532.1| ACYPI009639 [Acyrthosiphon pisum]
Length = 139
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 92/106 (86%), Gaps = 1/106 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET +G+++RGKL+EAEDNMNC ++ VTVT+RDG+V M N
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETIDGEVYRGKLIEAEDNMNCQVSHVTVTYRDGRVAQMEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQA 106
+Y+RGSK+RF+ILPDML+NAPMFK K GAAGRGKSG++R+
Sbjct: 61 VYVRGSKVRFIILPDMLRNAPMFKSKM-TMGGAAGRGKSGMIRSSV 105
>gi|291235317|ref|XP_002737590.1| PREDICTED: small nuclear ribonucleoprotein polypeptide D3-like
[Saccoglossus kowalevskii]
Length = 123
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 76/103 (73%), Positives = 93/103 (90%), Gaps = 2/103 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET++G+++RGKL+EAEDNMNC MA++TVT+RDG+V + +
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETSSGEVYRGKLIEAEDNMNCQMANITVTYRDGRVSQLEH 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILR 103
+YIRGSKIRFLILPDMLKNAPMFK K G K G AGRGKS +L+
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFK-KAGTK-GTAGRGKSALLK 101
>gi|395753131|ref|XP_003779548.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 4 [Pongo
abelii]
Length = 120
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQ 106
>gi|195148972|ref|XP_002015436.1| GL11081 [Drosophila persimilis]
gi|198455755|ref|XP_002138132.1| GA24604 [Drosophila pseudoobscura pseudoobscura]
gi|194109283|gb|EDW31326.1| GL11081 [Drosophila persimilis]
gi|198135383|gb|EDY68690.1| GA24604 [Drosophila pseudoobscura pseudoobscura]
Length = 150
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/106 (71%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M +TVT+RDG+ + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTGNLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGN-KAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPMFK + G G AGRGK+ ILRAQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAILRAQ 106
>gi|410932149|ref|XP_003979456.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like, partial
[Takifugu rubripes]
gi|281343886|gb|EFB19470.1| hypothetical protein PANDA_014546 [Ailuropoda melanoleuca]
Length = 106
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQ 106
>gi|440901202|gb|ELR52187.1| Small nuclear ribonucleoprotein Sm D3, partial [Bos grunniens
mutus]
Length = 107
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQ 106
>gi|351701822|gb|EHB04741.1| Small nuclear ribonucleoprotein Sm D3, partial [Heterocephalus
glaber]
Length = 136
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQ 106
>gi|238231831|ref|NP_001154102.1| Small nuclear ribonucleoprotein Sm D3 [Oncorhynchus mykiss]
gi|209734524|gb|ACI68131.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
gi|225704048|gb|ACO07870.1| Small nuclear ribonucleoprotein Sm D3 [Oncorhynchus mykiss]
Length = 128
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 90/108 (83%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT RDG+V +
Sbjct: 1 MSIGVPIKILHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTHRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGTGAGRGKAAILKAQVA 108
>gi|225734040|pdb|3CW1|D Chain D, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734049|pdb|3CW1|S Chain S, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734058|pdb|3CW1|T Chain T, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734067|pdb|3CW1|U Chain U, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 126
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 90/108 (83%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRG KIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGCKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108
>gi|194382308|dbj|BAG58909.1| unnamed protein product [Homo sapiens]
Length = 120
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQ 106
>gi|321456914|gb|EFX68011.1| hypothetical protein DAPPUDRAFT_63450 [Daphnia pulex]
Length = 118
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/109 (73%), Positives = 94/109 (86%), Gaps = 5/109 (4%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKLVEAEDNMNC M ++TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETNTGEIYRGKLVEAEDNMNCQMTNITVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQG----NKAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPMFK +QG + A A+GRGKS ILRAQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFK-RQGAKAASSAAASGRGKSAILRAQ 108
>gi|15079335|gb|AAH11510.1| Small nuclear ribonucleoprotein D3 [Mus musculus]
Length = 126
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 90/108 (83%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRG KIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGRKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108
>gi|242013355|ref|XP_002427375.1| Small nuclear ribonucleoprotein SM D3, putative [Pediculus humanus
corporis]
gi|212511744|gb|EEB14637.1| Small nuclear ribonucleoprotein SM D3, putative [Pediculus humanus
corporis]
Length = 136
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/133 (70%), Positives = 106/133 (79%), Gaps = 5/133 (3%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M +VT+RDGKV + N
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMVTCSVTYRDGKVSQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGG---PPQ 117
+YIRGSKIRFLILPDMLKNAPMFK Q +G AGRGKS ILRAQAARGRGRG P Q
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKRVQ-KGSGGAGRGKSAILRAQAARGRGRGAGATPSQ 119
Query: 118 RGGRGGWGGPSRG 130
RGGR W G G
Sbjct: 120 RGGR-TWVGTGTG 131
>gi|346472269|gb|AEO35979.1| hypothetical protein [Amblyomma maculatum]
Length = 122
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/104 (72%), Positives = 91/104 (87%), Gaps = 3/104 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGH++TCET G+++RGKLVEAEDNMNC MA++TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKA--GAAGRGKSGIL 102
+YIRGSKIRF+ILPDMLKNAPMFK K G K+ +AGRGKS IL
Sbjct: 61 VYIRGSKIRFMILPDMLKNAPMFK-KAGAKSATASAGRGKSAIL 103
>gi|354492024|ref|XP_003508152.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cricetulus
griseus]
Length = 126
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQ 106
>gi|427786245|gb|JAA58574.1| Putative small nuclear ribonucleoprotein sm d3 [Rhipicephalus
pulchellus]
Length = 122
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/104 (72%), Positives = 90/104 (86%), Gaps = 3/104 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKLVEAEDNMNC M ++TVT+RDG+V + N
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLVEAEDNMNCQMCNITVTYRDGRVAQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKA--GAAGRGKSGIL 102
+YIRGSKIRF+ILPDMLKNAPMFK K G K+ +AGRGKS IL
Sbjct: 61 VYIRGSKIRFMILPDMLKNAPMFK-KAGAKSATASAGRGKSAIL 103
>gi|156402297|ref|XP_001639527.1| predicted protein [Nematostella vectensis]
gi|156226656|gb|EDO47464.1| predicted protein [Nematostella vectensis]
Length = 110
Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 91/108 (84%), Gaps = 3/108 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGH+IT ET NG+++RGKL+EAEDNMNC M+++TVT RDG+V +
Sbjct: 1 MSIGVPIKILHEAEGHVITLETLNGEVYRGKLIEAEDNMNCQMSNITVTARDGRVSQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFK---GKQGNKAGAAGRGKSGILRAQ 105
+++RGSKIRFLILPDMLKNAPMFK K + GAAGRGKS ILRAQ
Sbjct: 61 VFVRGSKIRFLILPDMLKNAPMFKKMTQKGSSGTGAAGRGKSAILRAQ 108
>gi|209730588|gb|ACI66163.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 119
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT RDG+V +
Sbjct: 1 MSIGVPIKILHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTHRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQ 105
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGTGAGRGKAAILKAQ 106
>gi|194753313|ref|XP_001958958.1| GF12297 [Drosophila ananassae]
gi|190620256|gb|EDV35780.1| GF12297 [Drosophila ananassae]
Length = 151
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/103 (70%), Positives = 86/103 (83%), Gaps = 1/103 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M +TVT+RDG+ + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTASLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGN-KAGAAGRGKSGIL 102
+YIRGSKIRFLILPDMLKNAPMFK + G G AGRGK+ IL
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAIL 103
>gi|115497280|ref|NP_001069947.1| small nuclear ribonucleoprotein Sm D3 [Bos taurus]
gi|86437979|gb|AAI12525.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Bos taurus]
Length = 125
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 90/108 (83%), Gaps = 2/108 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG + +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-LAQLEQ 59
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 60 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 107
>gi|198436795|ref|XP_002126080.1| PREDICTED: similar to Small nuclear ribonucleoprotein Sm D3 (Sm-D3)
(snRNP core protein D3) [Ciona intestinalis]
Length = 130
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 89/106 (83%), Gaps = 3/106 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGH++TCE+ G+++RGKL+EAEDNMN M DVTVT+RDG+ + N
Sbjct: 1 MSIGVPIKVLHEAEGHVVTCESATGEVYRGKLIEAEDNMNSQMQDVTVTYRDGRTAQLQN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQA 106
IYIRGS++RF+ILPDMLKNAPM + ++G G AGRGK+ IL+AQ
Sbjct: 61 IYIRGSQVRFMILPDMLKNAPMLRHQKG---GTAGRGKAAILKAQV 103
>gi|391342640|ref|XP_003745624.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Metaseiulus
occidentalis]
Length = 138
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/105 (72%), Positives = 85/105 (80%), Gaps = 3/105 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKLVEAEDNMNC M +TVT+RDG + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETNTGEVYRGKLVEAEDNMNCHMQGITVTYRDGSTSQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFK---GKQGNKAGAAGRGKSGIL 102
+YIRGSKIRFLILPDMLKNAPMFK GK AAGRGKS IL
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKKPPGKGMQTGAAAGRGKSAIL 105
>gi|260837085|ref|XP_002613536.1| hypothetical protein BRAFLDRAFT_114009 [Branchiostoma floridae]
gi|229298921|gb|EEN69545.1| hypothetical protein BRAFLDRAFT_114009 [Branchiostoma floridae]
Length = 120
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/102 (69%), Positives = 87/102 (85%), Gaps = 2/102 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+T ETT G+++RGKLVEAEDNMNC MA++TVT+RDG+V + +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTLETTTGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLEH 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGIL 102
++IRGSKIRF+ILPDMLKNAPMFK +Q K A GKS IL
Sbjct: 61 VFIRGSKIRFMILPDMLKNAPMFKSQQ--KGQKAAMGKSAIL 100
>gi|41054297|ref|NP_956054.1| small nuclear ribonucleoprotein D3 polypeptide, like [Danio rerio]
gi|28278495|gb|AAH45929.1| Small nuclear ribonucleoprotein D3 polypeptide, like [Danio rerio]
gi|182889668|gb|AAI65492.1| Snrpd3l protein [Danio rerio]
Length = 128
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 91/108 (84%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVSQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGAGAGRGKAAILKAQVA 108
>gi|308321147|gb|ADO27727.1| small nuclear ribonucleoprotein sm d3 [Ictalurus furcatus]
Length = 128
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 91/108 (84%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSVKNKNQGAGAGRGKAAILKAQVA 108
>gi|209732182|gb|ACI66960.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 128
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 72/108 (66%), Positives = 88/108 (81%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+T ET G+++RGKL+ AEDNMNC M+++TVT RDG+V +
Sbjct: 1 MSIGVPIKILHEAEGHIVTGETNTGEVYRGKLIGAEDNMNCQMSNITVTHRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGTGAGRGKAAILKAQVA 108
>gi|225716266|gb|ACO13979.1| Small nuclear ribonucleoprotein Sm D3 [Esox lucius]
Length = 127
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 90/108 (83%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC MA++TVT RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGAGAGRGKAAILKAQVA 108
>gi|225706764|gb|ACO09228.1| Small nuclear ribonucleoprotein Sm D3 [Osmerus mordax]
gi|225707146|gb|ACO09419.1| Small nuclear ribonucleoprotein Sm D3 [Osmerus mordax]
Length = 127
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/108 (70%), Positives = 91/108 (84%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC MA++TVT RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+A AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQAAGAGRGKAAILKAQVA 108
>gi|442762477|gb|JAA73397.1| Putative small nuclear ribonucleoprotein sm d3, partial [Ixodes
ricinus]
Length = 119
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 84/98 (85%), Gaps = 3/98 (3%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
IK+LHEAEGHI+TCET G+++RGKLVEAEDNMNC MA++TVT+RDG+V + N+YIRGS
Sbjct: 4 IKVLHEAEGHIVTCETNTGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLENVYIRGS 63
Query: 67 KIRFLILPDMLKNAPMFKGKQGNK--AGAAGRGKSGIL 102
KIRFLILPDMLKNAPMFK K G K +AGRGKS IL
Sbjct: 64 KIRFLILPDMLKNAPMFK-KAGTKTATASAGRGKSAIL 100
>gi|209732980|gb|ACI67359.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 127
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 90/108 (83%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC MA++TVT RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGAGAGRGKAAILKAQVA 108
>gi|339251460|ref|XP_003372752.1| putative LSM domain protein [Trichinella spiralis]
gi|316968894|gb|EFV53095.1| putative LSM domain protein [Trichinella spiralis]
Length = 133
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 94/129 (72%), Gaps = 6/129 (4%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+G+P+K+LHEAEGHI+ ETT G++FRGKL+EAEDNMNC M DVTVT+RDG+V M
Sbjct: 1 MSLGVPLKILHEAEGHIVMLETTTGEVFRGKLLEAEDNMNCNMTDVTVTYRDGQVTQMDQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG--KQGNKAGAAGRGKSGILRAQAAR----GRGRGG 114
+YIRGSKIRFLILPDMLKNAPMFK K K A RGK+ +++ GRGRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKTMLKGVPKVPAPPRGKAAAFKSKMFCHFEGGRGRGV 120
Query: 115 PPQRGGRGG 123
RG RG
Sbjct: 121 FSSRGFRGS 129
>gi|50344816|ref|NP_001002081.1| small nuclear ribonucleoprotein Sm D3 [Danio rerio]
gi|47938090|gb|AAH71554.1| Small nuclear ribonucleoprotein D3 polypeptide [Danio rerio]
Length = 127
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 91/108 (84%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDN+NC MA++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNVNCQMANITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N A AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNPAAGAGRGKAAILKAQVA 108
>gi|358254548|dbj|GAA55787.1| small nuclear ribonucleoprotein D3 [Clonorchis sinensis]
Length = 715
Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats.
Identities = 68/104 (65%), Positives = 83/104 (79%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+GIPIK+LH+AEGH+IT ET NG++FRGKLVEAEDNMN MAD+ +T RDG+ +
Sbjct: 1 MSVGIPIKVLHDAEGHVITLETVNGEVFRGKLVEAEDNMNIQMADIILTARDGRTSNLQQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRA 104
+YIRGSKIRFLILPDMLKN+PM K G K GRGK+ ++RA
Sbjct: 61 VYIRGSKIRFLILPDMLKNSPMLKRPLGAKGLGTGRGKNAMIRA 104
>gi|339251454|ref|XP_003372749.1| putative LSM domain protein [Trichinella spiralis]
gi|316968905|gb|EFV53105.1| putative LSM domain protein [Trichinella spiralis]
Length = 133
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 94/128 (73%), Gaps = 6/128 (4%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+G+P+K+LHEAEGHI+ ETT G++FRGKL+EAEDNMNC M DVTVT+RDG+V M
Sbjct: 1 MSLGVPLKILHEAEGHIVMLETTTGEVFRGKLLEAEDNMNCNMTDVTVTYRDGQVAQMEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG--KQGNKAGAAGRGKSGILRAQAAR----GRGRGG 114
+YIRGSKIRFLILPDMLKNAPMF+ K K A RGK+ +++ GRGRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFRTMLKGVPKVPAPPRGKAAAFKSKMFCHFKGGRGRGV 120
Query: 115 PPQRGGRG 122
RG RG
Sbjct: 121 FSGRGFRG 128
>gi|226472944|emb|CAX71158.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
Length = 147
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 87/111 (78%), Gaps = 1/111 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+GIPIK+LH+AEGH++T ET +G++FRGKLVEAEDNMN M D+ +T RDG+ +
Sbjct: 1 MSVGIPIKVLHDAEGHVVTLETVSGEVFRGKLVEAEDNMNVHMCDLIMTSRDGRTSNLQQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRG 111
+YIRGSKIRFLILPDMLKN+PM K QG K GRGK+ +LRA RGRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNSPMLKRPQGAKGLGTGRGKNAMLRA-GVRGRG 110
>gi|56756683|gb|AAW26514.1| SJCHGC04758 protein [Schistosoma japonicum]
gi|226469480|emb|CAX76570.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469482|emb|CAX76571.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469484|emb|CAX76572.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469486|emb|CAX76573.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469488|emb|CAX76574.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469490|emb|CAX76575.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469492|emb|CAX76576.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469494|emb|CAX76577.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469496|emb|CAX76578.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226472942|emb|CAX71157.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
Length = 130
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 87/111 (78%), Gaps = 1/111 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+GIPIK+LH+AEGH++T ET +G++FRGKLVEAEDNMN M D+ +T RDG+ +
Sbjct: 1 MSVGIPIKVLHDAEGHVVTLETVSGEVFRGKLVEAEDNMNVHMCDLIMTSRDGRTSNLQQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRG 111
+YIRGSKIRFLILPDMLKN+PM K QG K GRGK+ +LRA RGRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNSPMLKRPQGAKGLGTGRGKNAMLRA-GVRGRG 110
>gi|256083677|ref|XP_002578067.1| small nuclear ribonucleoprotein SM-D3 [Schistosoma mansoni]
gi|68165953|gb|AAY87930.1| small nuclear ribonucleoprotein SM-D3 [Schistosoma mansoni]
gi|353230790|emb|CCD77207.1| putative small nuclear ribonucleoprotein SM-D3 [Schistosoma
mansoni]
Length = 130
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 87/111 (78%), Gaps = 1/111 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+GIPIK+LH+AEGH++T ET +G++FRGKLVEAEDNMN M D+ +T RDG+ +
Sbjct: 1 MSVGIPIKVLHDAEGHVVTLETVSGEVFRGKLVEAEDNMNVHMCDLIMTSRDGRTSNLQQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRG 111
+YIRGSKIRFLILPDMLKN+PM K QG K GRGK+ +LRA RGRG
Sbjct: 61 VYIRGSKIRFLILPDMLKNSPMLKRPQGAKGLGTGRGKNAMLRA-GVRGRG 110
>gi|221131194|ref|XP_002165640.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Hydra
magnipapillata]
Length = 130
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 84/107 (78%), Gaps = 1/107 (0%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
SIG+PIK+LHEAEGHI+T ET G+++RGKL+EAEDNMNC + +T+T RDGKV + I
Sbjct: 4 SIGVPIKVLHEAEGHIVTLETLTGEVYRGKLLEAEDNMNCQLTHITMTARDGKVAQLEQI 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQ-GNKAGAAGRGKSGILRAQAA 107
+IRGSKIRF+ILPDMLKNAPMFK K GRGKS +L+AQ A
Sbjct: 64 FIRGSKIRFVILPDMLKNAPMFKKMLVSQKNTGVGRGKSALLKAQVA 110
>gi|209731578|gb|ACI66658.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 127
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 88/108 (81%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M IG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC MA++TVT RDG+V +
Sbjct: 1 MPIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAP K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPTLKSMKNKNQGAGAGRGKAAILKAQVA 108
>gi|196006814|ref|XP_002113273.1| hypothetical protein TRIADDRAFT_8416 [Trichoplax adhaerens]
gi|190583677|gb|EDV23747.1| hypothetical protein TRIADDRAFT_8416, partial [Trichoplax
adhaerens]
Length = 101
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 84/105 (80%), Gaps = 4/105 (3%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIGIP+K+LHEAEGH+IT ET +G+++RGKL EAEDNMNC M V VT+RDG+ +
Sbjct: 1 MSIGIPVKILHEAEGHVITLETVSGEVYRGKLSEAEDNMNCQMYSVNVTYRDGRTAYLQQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQ 105
I++RGSK+RF+++PDMLKNAPMFK K NKA GKS IL+AQ
Sbjct: 61 IFVRGSKVRFIVIPDMLKNAPMFK-KTSNKAEL---GKSAILKAQ 101
>gi|341886102|gb|EGT42037.1| CBN-SNR-1 protein [Caenorhabditis brenneri]
Length = 136
Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 95/131 (72%), Gaps = 5/131 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+G+PIK+LHEAEGH +T ET G+++RGKL+EAEDNMNC +A+ VTFRDG+ + N+
Sbjct: 3 SVGVPIKILHEAEGHTVTLETVTGEVYRGKLIEAEDNMNCQLAETIVTFRDGRSHQLENV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRG-G 120
+IRG+KIRF+ILPDMLKNAPMFK + GA G G G+ RGRGRG +R G
Sbjct: 63 FIRGNKIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLGGL----DQRGRGRGTAFRRPMG 118
Query: 121 RGGWGGPSRGG 131
RGG G SR G
Sbjct: 119 RGGPRGMSRPG 129
>gi|324540294|gb|ADY49583.1| Small nuclear ribonucleoprotein Sm D3, partial [Ascaris suum]
Length = 143
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 87/111 (78%), Gaps = 1/111 (0%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IG+PIK+LHEAEGHI+T ETT G+++RGKL+EAEDNMNC M+DV VT+RDG+ + N+
Sbjct: 3 AIGVPIKILHEAEGHIVTLETTIGEVYRGKLIEAEDNMNCQMSDVNVTYRDGRTHQLDNV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAA-RGRG 111
+IRGSKIRF+ILPDMLKNAPMFK + GA G G +AA RGRG
Sbjct: 63 FIRGSKIRFMILPDMLKNAPMFKNIGRAQKGAVGMGMGDNRDGRAAFRGRG 113
>gi|17542052|ref|NP_503027.1| Protein SNR-1 [Caenorhabditis elegans]
gi|21542463|sp|Q17348.2|SMD3_CAEEL RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|5832794|emb|CAB55132.1| Protein SNR-1 [Caenorhabditis elegans]
Length = 136
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 95/131 (72%), Gaps = 5/131 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+G+PIK+LHEAEGH++T ET G+++RGKL EAEDNMNC +A+ VTFRDG+ + N+
Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRG-G 120
+IRG+KIRF+ILPDMLKNAPMFK + GA G G G+ RGRGRG +R G
Sbjct: 63 FIRGNKIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLGGL----DQRGRGRGTAFRRPMG 118
Query: 121 RGGWGGPSRGG 131
RGG G SR G
Sbjct: 119 RGGPRGMSRPG 129
>gi|268534544|ref|XP_002632403.1| C. briggsae CBR-SNR-1 protein [Caenorhabditis briggsae]
Length = 136
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 95/131 (72%), Gaps = 5/131 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+G+PIK+LHEAEGH +T ET G+++RGKL+EAEDNMNC +++ VTFRDG+ + N+
Sbjct: 3 SVGVPIKILHEAEGHTVTLETVTGEVYRGKLIEAEDNMNCQLSETIVTFRDGRSHQLENV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRG-G 120
+IRG+KIRF+ILPDMLKNAPMFK + GA G G G+ RGRGRG +R G
Sbjct: 63 FIRGNKIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLGGL----DQRGRGRGTAFRRPMG 118
Query: 121 RGGWGGPSRGG 131
RGG G SR G
Sbjct: 119 RGGPRGMSRPG 129
>gi|170574009|ref|XP_001892634.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|170579971|ref|XP_001895061.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|312076574|ref|XP_003140922.1| small nuclear ribonucleoprotein Sm D3 [Loa loa]
gi|158598127|gb|EDP36091.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
gi|158601689|gb|EDP38531.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
gi|307763915|gb|EFO23149.1| small nuclear ribonucleoprotein Sm D3 [Loa loa]
gi|402590446|gb|EJW84376.1| small nuclear ribonucleoprotein Sm D3 [Wuchereria bancrofti]
Length = 138
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/133 (58%), Positives = 96/133 (72%), Gaps = 7/133 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IG+PIK+LHEAEGH+IT ETT G+++RGKL EAEDNMNC M++VTVT+RDG+ + N+
Sbjct: 3 AIGVPIKILHEAEGHVITLETTIGEVYRGKLNEAEDNMNCQMSEVTVTYRDGRTHHLDNV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG-----KSGILRAQAARGRGRGGPP 116
+IRGSKIRF+ILPDMLKNAPMFK + GA G G LR + RGRGGP
Sbjct: 63 FIRGSKIRFMILPDMLKNAPMFKNIGRAQKGAVGMGMGDNRDGRGLRGRGTAFRGRGGP- 121
Query: 117 QRGGRGGWGGPSR 129
RG + G GG R
Sbjct: 122 -RGNQRGPGGMPR 133
>gi|294653209|gb|ADF28512.1| small nuclear robonucleoprotein SMD3 [Pelinobius muticus]
Length = 122
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 74/83 (89%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+G+P+K+ HEAEGH++T ET G+++RG+LVEAEDNMNC MADVTVT+RDG+V + N
Sbjct: 1 MSLGVPVKVFHEAEGHVVTLETNTGEIYRGRLVEAEDNMNCQMADVTVTYRDGRVGQLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMF 83
IYIRGSKIRFLILPD LKNAPMF
Sbjct: 61 IYIRGSKIRFLILPDTLKNAPMF 83
>gi|167524150|ref|XP_001746411.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775173|gb|EDQ88798.1| predicted protein [Monosiga brevicollis MX1]
Length = 325
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 82/104 (78%), Gaps = 1/104 (0%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
I +PIK++HE EGH++T E NG+++RGKLVEAEDNMN + DVT T RDG+V + ++Y
Sbjct: 175 ISVPIKIMHEGEGHVVTIELKNGEIYRGKLVEAEDNMNSQLRDVTFTARDGQVAHVESVY 234
Query: 63 IRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQA 106
IRGSKIRF +LPDMLKNAPMFK + K AGRGK+ ILRAQA
Sbjct: 235 IRGSKIRFFVLPDMLKNAPMFK-RASAKGMTAGRGKTAILRAQA 277
>gi|340383261|ref|XP_003390136.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Amphimedon
queenslandica]
Length = 131
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 87/106 (82%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIGIPIKLLHEAEGHI+T ET G+++RGKL+EAEDNMNC + +VTVT R G+V +
Sbjct: 1 MSIGIPIKLLHEAEGHIVTLETVMGEIYRGKLLEAEDNMNCQLQNVTVTNRSGQVSQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQA 106
+++RGS IRFLI+PDMLKNAPMFK K G K AAG GKS ++RAQA
Sbjct: 61 VFVRGSMIRFLIVPDMLKNAPMFKPKSGAKGLAAGAGKSAMIRAQA 106
>gi|281201849|gb|EFA76057.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 351
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/118 (61%), Positives = 87/118 (73%), Gaps = 7/118 (5%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIGIP+K+LHEA+ H+IT E NGDL+RG L+E+EDNMNC M ++T+T ++GK +
Sbjct: 70 MSIGIPVKILHEADSHVITLELRNGDLYRGTLIESEDNMNCRMENITMTAKNGKQTQIEQ 129
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKS-GILRAQAARGRGRGGPPQ 117
IYIRGSKIRF ILPDMLKNAPMFK G RGKS GI R+ GR RGGPP+
Sbjct: 130 IYIRGSKIRFFILPDMLKNAPMFKRIDGR---TVLRGKSLGIGRSV---GRARGGPPR 181
>gi|313228903|emb|CBY18055.1| unnamed protein product [Oikopleura dioica]
Length = 124
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 76/91 (83%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+GIPIK+LHEAE H+ITCET+ G++FRGKLVEAE++MN M DVT T+R+G +AN
Sbjct: 1 MSLGIPIKVLHEAESHVITCETSTGEVFRGKLVEAEEHMNIQMQDVTATYRNGSTAQLAN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKA 91
IYIRG++I+F+ILP+MLKNAPM K N+A
Sbjct: 61 IYIRGTQIKFMILPEMLKNAPMLKVATRNQA 91
>gi|170585533|ref|XP_001897537.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|158595042|gb|EDP33618.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
Length = 91
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 75/84 (89%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IG+PIK+LHEAEGH+IT ETT G+++RGKL EAEDNMNC M++VTVT+RDG+ + N+
Sbjct: 3 AIGVPIKILHEAEGHVITLETTIGEVYRGKLNEAEDNMNCQMSEVTVTYRDGRTHHLDNV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKG 85
+IRGSKIRF+ILPDMLKNAPMFK
Sbjct: 63 FIRGSKIRFMILPDMLKNAPMFKN 86
>gi|171693559|ref|XP_001911704.1| hypothetical protein [Podospora anserina S mat+]
gi|170946728|emb|CAP73532.1| unnamed protein product [Podospora anserina S mat+]
Length = 118
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 89/122 (72%), Gaps = 9/122 (7%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHI+T E T+G +RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAGRGKSGILRAQAARGRGRGGPPQRG 119
YIRGS +RF I+PDML+NAPMF+ + +G G A RG RA +R R GGPP RG
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRNVRGRGVGLA-RG-----RATVSRARASGGPP-RG 116
Query: 120 GR 121
GR
Sbjct: 117 GR 118
>gi|255948872|ref|XP_002565203.1| Pc22g12590 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592220|emb|CAP98547.1| Pc22g12590 [Penicillium chrysogenum Wisconsin 54-1255]
gi|425774880|gb|EKV13173.1| Small nuclear ribonucleoprotein SmD3, putative [Penicillium
digitatum PHI26]
gi|425780976|gb|EKV18959.1| Small nuclear ribonucleoprotein SmD3, putative [Penicillium
digitatum Pd1]
Length = 117
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 88/112 (78%), Gaps = 3/112 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTIEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAARGRG 111
YIRGS +RF I+PDML+NAPMF +G++G G A RGK+ + RA+ RGRG
Sbjct: 67 YIRGSHVRFFIVPDMLRNAPMFRTRGQRGRGVGLA-RGKATVQRARGQRGRG 117
>gi|308482400|ref|XP_003103403.1| CRE-SNR-1 protein [Caenorhabditis remanei]
gi|308259824|gb|EFP03777.1| CRE-SNR-1 protein [Caenorhabditis remanei]
Length = 152
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 96/147 (65%), Gaps = 21/147 (14%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+G+PIK+LHEAEGH++T ET G+++RGKL+EAEDNMNC +++ VTFRDG+ + N+
Sbjct: 3 SVGVPIKILHEAEGHVVTLETVTGEVYRGKLIEAEDNMNCQLSETIVTFRDGRSHQLENV 62
Query: 62 YIRGSK----------------IRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQ 105
+IRG+K IRF+ILPDMLKNAPMFK + GA G G GI
Sbjct: 63 FIRGNKVRFKALLYLELPYIFQIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLGGI---- 118
Query: 106 AARGRGRGGPPQRG-GRGGWGGPSRGG 131
RGRGRG +R GRGG G SR G
Sbjct: 119 DPRGRGRGTAFRRPMGRGGPRGMSRPG 145
>gi|340904841|gb|EGS17209.1| small nuclear ribonucleoprotein smD3-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 114
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 87/113 (76%), Gaps = 4/113 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
SIGIPIKLL+EA+GHI+T E T G +RGKL+EAEDNMN + D+TVT RDG+V + I
Sbjct: 4 SIGIPIKLLNEAQGHIVTLELTTGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQI 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAGRGKSGILRAQAARGRGR 112
YIRGS +RF I+PDML+NAPMF+ + +G G A RG++ + RA+A+ GRGR
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRNVRGRGVGLA-RGRATVSRARAS-GRGR 114
>gi|340519305|gb|EGR49544.1| predicted protein [Trichoderma reesei QM6a]
gi|358388432|gb|EHK26025.1| hypothetical protein TRIVIDRAFT_27430, partial [Trichoderma virens
Gv29-8]
gi|358392460|gb|EHK41864.1| hypothetical protein TRIATDRAFT_134655, partial [Trichoderma
atroviride IMI 206040]
Length = 114
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 87/112 (77%), Gaps = 3/112 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHIIT E T+G +RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIITLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAGRGKSGILRAQAARGRG 111
YIRGS +RF I+PDML+NAPMF+ + +G G A RG++ + RA+A+ GRG
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRNVRGRGVGLA-RGRATVSRARASGGRG 114
>gi|367037323|ref|XP_003649042.1| hypothetical protein THITE_57872, partial [Thielavia terrestris
NRRL 8126]
gi|346996303|gb|AEO62706.1| hypothetical protein THITE_57872, partial [Thielavia terrestris
NRRL 8126]
Length = 114
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 88/115 (76%), Gaps = 6/115 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
SIGIPIKLL+EA+GHI+T E T+G +RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 SIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAGRGKSGILRAQAARGRGRGG 114
YIRGS +RF I+PDML+NAPMF+ + +G G A RG++ + RA+A+ GRGG
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRNVRGRGVGLA-RGRATVSRARAS---GRGG 114
>gi|302811572|ref|XP_002987475.1| hypothetical protein SELMODRAFT_183167 [Selaginella moellendorffii]
gi|300144881|gb|EFJ11562.1| hypothetical protein SELMODRAFT_183167 [Selaginella moellendorffii]
Length = 135
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 91/128 (71%), Gaps = 8/128 (6%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEAEGH++T E +G+L+RG L+E EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAEGHVVTVELKSGELYRGTLIECEDNWNCQLENITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA------AGRGKSGILRAQAARGRGRGGP 115
++RGSK+RF+I+PDMLKNAPMFK + G GRG++ +RA+ AR GRG P
Sbjct: 64 FVRGSKVRFMIIPDMLKNAPMFKRLEAKIKGKGSAGIGVGRGRAVSMRAK-ARAAGRGVP 122
Query: 116 -PQRGGRG 122
P GGR
Sbjct: 123 QPVPGGRA 130
>gi|440634941|gb|ELR04860.1| small nuclear ribonucleoprotein D3 [Geomyces destructans 20631-21]
Length = 117
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 89/116 (76%), Gaps = 6/116 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAARGRGRGGP 115
YIRGS +RF I+PDML+NAPMF +G +G G A RG++ + RA+A+ GRG P
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRGVKGRGVGLA-RGRATVSRARAS---GRGAP 115
>gi|367024463|ref|XP_003661516.1| hypothetical protein MYCTH_2301009 [Myceliophthora thermophila ATCC
42464]
gi|347008784|gb|AEO56271.1| hypothetical protein MYCTH_2301009 [Myceliophthora thermophila ATCC
42464]
Length = 114
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 87/113 (76%), Gaps = 4/113 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
SIGIPIKLL+EA+GHI+T E T+G +RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 SIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAGRGKSGILRAQAARGRGR 112
YIRGS +RF I+PDML+NAPMF+ + +G G A RG++ + RA+A GRGR
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRNVRGRGVGLA-RGRATVSRARAG-GRGR 114
>gi|224083270|ref|XP_002306975.1| predicted protein [Populus trichocarpa]
gi|222856424|gb|EEE93971.1| predicted protein [Populus trichocarpa]
Length = 132
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 88/123 (71%), Gaps = 6/123 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GHI+T E +G+L+RG +VE EDN NC + +T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEASGHIVTVELKSGELYRGGMVECEDNWNCQLESITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAA-----GRGKSGILRAQAARGRGRGGPP 116
+IRGSK+RF+++PDMLKNAPMFK G + GRG+S +R++ A+ GRG PP
Sbjct: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSASLGVGRGRSVAMRSK-AQAAGRGAPP 122
Query: 117 QRG 119
RG
Sbjct: 123 GRG 125
>gi|170087186|ref|XP_001874816.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650016|gb|EDR14257.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 127
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 88/124 (70%), Gaps = 7/124 (5%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+P+KLLHE+ GHIIT E G L+RGKL EAEDN+N ++ D+TVT RDG+V + +Y
Sbjct: 5 LGVPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVY 64
Query: 63 IRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQ 117
IRGS +RF I+PDML+NAPMFK +G G A RG++ I+RA A RGRG PP
Sbjct: 65 IRGSMVRFFIVPDMLQNAPMFKRVGPNAMRGRGIGTA-RGRATIMRANARRGRG-VVPPA 122
Query: 118 RGGR 121
RG R
Sbjct: 123 RGIR 126
>gi|347841024|emb|CCD55596.1| hypothetical protein [Botryotinia fuckeliana]
Length = 117
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 85/115 (73%), Gaps = 4/115 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHVVTLEITTGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-AGRGKSGILRAQAARGRGRGGP 115
YIRGS +RF I+PDML+NAPMF+ + G RG++ + RA+A+ GRG P
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRNTRGRGVGLARGRATVSRARAS---GRGAP 115
>gi|333656534|gb|AEF68170.1| Sm-D3-like protein [Physarum polycephalum]
Length = 134
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 77/91 (84%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIKLLHEAEGHI+T E G+++RG+L+E+EDNMNC + ++T+T RDG++ + +
Sbjct: 1 MSIGVPIKLLHEAEGHIVTIELKTGEVYRGQLIESEDNMNCQLGNITLTARDGRISNLEH 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKA 91
Y+RGSKIRFLILPDMLKNAPMFK + +K+
Sbjct: 61 AYVRGSKIRFLILPDMLKNAPMFKRVEASKS 91
>gi|169614183|ref|XP_001800508.1| hypothetical protein SNOG_10228 [Phaeosphaeria nodorum SN15]
gi|160707292|gb|EAT82563.2| hypothetical protein SNOG_10228 [Phaeosphaeria nodorum SN15]
Length = 117
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 90/115 (78%), Gaps = 4/115 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA GHIIT E T+G+++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAAGHIITLEITSGEVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLEQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAA-RGRGRG 113
YIRGS +R+ I+PDML+NAPMF +G +G G A RG++ + RA+A+ RG GRG
Sbjct: 64 YIRGSHVRYFIVPDMLRNAPMFRSRGTRGRGVGLA-RGRATVNRARASTRGGGRG 117
>gi|224065689|ref|XP_002301922.1| predicted protein [Populus trichocarpa]
gi|222843648|gb|EEE81195.1| predicted protein [Populus trichocarpa]
Length = 132
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 87/123 (70%), Gaps = 6/123 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GHI+T E +G+L+RG +VE EDN NC + +T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEASGHIVTVELKSGELYRGSMVECEDNWNCQLESITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAA-----GRGKSGILRAQAARGRGRGGPP 116
+IRGSK+RF+++PDMLKNAPMFK G + GRG+S +R++ A+ GRG P
Sbjct: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSASLGVGRGRSVAMRSK-AQATGRGAAP 122
Query: 117 QRG 119
RG
Sbjct: 123 GRG 125
>gi|393217444|gb|EJD02933.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 126
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 89/125 (71%), Gaps = 8/125 (6%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+G+P+KLLHE+ GH+IT E G L+RGKL EAED++N ++ D+TVT RDG+V + +
Sbjct: 4 SLGVPVKLLHESLGHVITVELKTGQLYRGKLAEAEDSLNISLKDITVTGRDGRVSQLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGPP 116
YIRGS +RF I+PDML+NAPMFK +G G A RG++ I+RA A RGRG+ P
Sbjct: 64 YIRGSMVRFFIVPDMLQNAPMFKRVGPNAMRGRGIGTA-RGRATIMRANARRGRGQ--PA 120
Query: 117 QRGGR 121
RG R
Sbjct: 121 ARGIR 125
>gi|403412007|emb|CCL98707.1| predicted protein [Fibroporia radiculosa]
Length = 127
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 87/124 (70%), Gaps = 8/124 (6%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+GIP+KLLHE+ GHIIT E G L+RGKL EAEDN+N ++ D+TVT RDG+V + +Y
Sbjct: 6 LGIPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVY 65
Query: 63 IRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQ 117
IRGS IRF I+PDML+NAPMFK +G G A RG++ I+RA A RGRG P
Sbjct: 66 IRGSMIRFFIVPDMLQNAPMFKRVGPNAMRGRGIGTA-RGRATIMRANAR--RGRGVPAA 122
Query: 118 RGGR 121
RG R
Sbjct: 123 RGIR 126
>gi|310799322|gb|EFQ34215.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 115
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 88/115 (76%), Gaps = 6/115 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHI+T E T+G +RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAGRGKSGILRAQAARGRGRGG 114
YIRGS +RF I+PDML+NAPMF+ + +G G A RG++ + RA+A+ GRGG
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRNVRGRGVGMA-RGRATVSRARAS---GRGG 114
>gi|392594010|gb|EIW83335.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 125
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 83/114 (72%), Gaps = 6/114 (5%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+P+KLLHE+ GH+IT E G L+RGKL EAEDN+N ++ D+TVT RDG+V + +Y
Sbjct: 4 LGVPVKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKDITVTARDGRVSQLDQVY 63
Query: 63 IRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRG 111
IRGS IRF I+PDML+NAPMFK +G G A RG++ I+RA A RGRG
Sbjct: 64 IRGSMIRFFIVPDMLQNAPMFKRVGPNAMRGRGIGTA-RGRATIMRANARRGRG 116
>gi|395333040|gb|EJF65418.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 128
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 88/124 (70%), Gaps = 7/124 (5%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+P+KLLHE+ GH+IT E G L+RGKL EAEDN+N ++ D+TVT RDG+V + +Y
Sbjct: 6 LGVPVKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKDITVTQRDGRVSQLDQVY 65
Query: 63 IRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQ 117
IRGS +RF I+PDML+NAPMFK +G G A RG++ I+R ++R RGRG P
Sbjct: 66 IRGSMVRFFIVPDMLQNAPMFKRVGPNAMRGRGIGTA-RGRATIMRGASSR-RGRGVPAA 123
Query: 118 RGGR 121
RG R
Sbjct: 124 RGIR 127
>gi|189199034|ref|XP_001935854.1| small nuclear ribonucleoprotein Sm D3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330913493|ref|XP_003296291.1| hypothetical protein PTT_05811 [Pyrenophora teres f. teres 0-1]
gi|187982953|gb|EDU48441.1| small nuclear ribonucleoprotein Sm D3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311331686|gb|EFQ95612.1| hypothetical protein PTT_05811 [Pyrenophora teres f. teres 0-1]
Length = 118
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 87/122 (71%), Gaps = 8/122 (6%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA GHI+T E T+G+++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAAGHIVTLEITSGEVYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGGR 121
YIRGS +R+ I+PDML+NAPMF+ + G GRG G+ R +A R R RGG
Sbjct: 64 YIRGSHVRYFIVPDMLRNAPMFRSR-----GTRGRG-VGLARGRATVNRARA--STRGGA 115
Query: 122 GG 123
GG
Sbjct: 116 GG 117
>gi|451851728|gb|EMD65026.1| hypothetical protein COCSADRAFT_36375 [Cochliobolus sativus ND90Pr]
gi|451995470|gb|EMD87938.1| hypothetical protein COCHEDRAFT_1183070 [Cochliobolus
heterostrophus C5]
Length = 116
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/114 (57%), Positives = 89/114 (78%), Gaps = 4/114 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA GHI+T E T+G+++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAAGHIVTLEITSGEVYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAA-RGRGR 112
YIRGS +R+ I+PDML+NAPMF +G +G G A RG++ + RA+A+ RG GR
Sbjct: 64 YIRGSHVRYFIVPDMLRNAPMFRSRGTRGRGVGLA-RGRATVNRARASTRGGGR 116
>gi|390602523|gb|EIN11916.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 127
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 84/118 (71%), Gaps = 6/118 (5%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+GIP+KLLHE+ GHIIT E G L+RGKL EAEDN+N ++ D+TVT RDG+V + +Y
Sbjct: 6 LGIPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVY 65
Query: 63 IRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGP 115
IRGS +RF I+PDML+NAPMFK +G G A RG++ I+RA A RGRG P
Sbjct: 66 IRGSMVRFFIVPDMLQNAPMFKRVGPNAMRGRGIGTA-RGRATIMRANARRGRGVPAP 122
>gi|407923942|gb|EKG17004.1| hypothetical protein MPH_05830 [Macrophomina phaseolina MS6]
Length = 114
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 84/110 (76%), Gaps = 3/110 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA GH++T E T G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEATGHVVTLELTTGHVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAARG 109
YIRGS +RF I+PDML+NAPMF +G +G G A RG++ + RA+ ARG
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRGTRGRGVGLA-RGRATVNRARGARG 112
>gi|115492327|ref|XP_001210791.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus terreus NIH2624]
gi|169771623|ref|XP_001820281.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus oryzae RIB40]
gi|238485796|ref|XP_002374136.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus flavus
NRRL3357]
gi|83768140|dbj|BAE58279.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|114197651|gb|EAU39351.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus terreus NIH2624]
gi|220699015|gb|EED55354.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus flavus
NRRL3357]
gi|391871729|gb|EIT80886.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus oryzae 3.042]
Length = 116
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/114 (57%), Positives = 88/114 (77%), Gaps = 6/114 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
YIRGS +RF I+PDML+NAPMF +G++G G A RGK+ + Q ARG+ RG
Sbjct: 67 YIRGSHVRFFIVPDMLRNAPMFRSRGQRGRGVGLA-RGKATV---QRARGQRRG 116
>gi|67523101|ref|XP_659611.1| hypothetical protein AN2007.2 [Aspergillus nidulans FGSC A4]
gi|40745683|gb|EAA64839.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259487374|tpe|CBF86001.1| TPA: small nuclear ribonucleoprotein SmD3, putative
(AFU_orthologue; AFUA_4G10240) [Aspergillus nidulans
FGSC A4]
Length = 116
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/114 (57%), Positives = 88/114 (77%), Gaps = 6/114 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
YIRGS +RF I+PDML+NAPMF +G++G G A RGK+ + Q ARG+ RG
Sbjct: 67 YIRGSHVRFFIVPDMLRNAPMFRTRGQRGRGVGLA-RGKATV---QRARGQRRG 116
>gi|384497430|gb|EIE87921.1| hypothetical protein RO3G_12632 [Rhizopus delemar RA 99-880]
Length = 129
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+IG+PIKLLHEA+GHII+ E G L+RGKL+EAEDNMN + D+TVT RDG+V +
Sbjct: 1 MTIGVPIKLLHEAQGHIISLELKTGQLYRGKLLEAEDNMNIQLKDITVTARDGRVSQLDQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG 85
+YIRGS +RF I+PDMLKNAPMFKG
Sbjct: 61 VYIRGSHVRFFIVPDMLKNAPMFKG 85
>gi|212538165|ref|XP_002149238.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|242807429|ref|XP_002484954.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
stipitatus ATCC 10500]
gi|210068980|gb|EEA23071.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|218715579|gb|EED15001.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 116
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 85/109 (77%), Gaps = 3/109 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAAR 108
YIRGS +RF I+PDML+NAPMF +G++G G A RGK+ + RA+ R
Sbjct: 67 YIRGSHVRFFIVPDMLRNAPMFRTRGQRGRGVGLA-RGKATVNRARGQR 114
>gi|336363219|gb|EGN91635.1| hypothetical protein SERLA73DRAFT_192176 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384161|gb|EGO25309.1| hypothetical protein SERLADRAFT_465253 [Serpula lacrymans var.
lacrymans S7.9]
Length = 127
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 87/124 (70%), Gaps = 8/124 (6%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+P+KLLHE+ GHIIT E G L+RGKL EAEDN+N ++ D+TVT RDG+V + +Y
Sbjct: 6 LGVPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVY 65
Query: 63 IRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQ 117
IRGS +RF I+PDML+NAPMFK +G G A RG++ I+RA A RGRG P
Sbjct: 66 IRGSMVRFFIVPDMLQNAPMFKRVGPNAMRGRGIGTA-RGRATIMRANAR--RGRGVPAA 122
Query: 118 RGGR 121
RG R
Sbjct: 123 RGIR 126
>gi|409080651|gb|EKM81011.1| hypothetical protein AGABI1DRAFT_112714 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197565|gb|EKV47492.1| hypothetical protein AGABI2DRAFT_192678 [Agaricus bisporus var.
bisporus H97]
Length = 128
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 87/124 (70%), Gaps = 7/124 (5%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+P+KLLHE+ GHIIT E G L+RGKL EAEDN+N ++ D+TVT RDG+V + +Y
Sbjct: 6 LGVPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVY 65
Query: 63 IRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQ 117
IRGS IRF I+PDML+NAPMFK +G G A RG++ I+RA A RGRG P
Sbjct: 66 IRGSMIRFFIVPDMLQNAPMFKRVGPNAMRGRGIGTA-RGRATIMRANARRGRG-AVPAP 123
Query: 118 RGGR 121
RG R
Sbjct: 124 RGIR 127
>gi|392569479|gb|EIW62652.1| small nuclear ribonucleo protein Sm D3 [Trametes versicolor
FP-101664 SS1]
Length = 131
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 89/127 (70%), Gaps = 10/127 (7%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+GIP+KLLHE+ GH+IT E G L+RGKL EAEDN+N ++ D+TVT RDG+V + +Y
Sbjct: 6 LGIPVKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKDITVTQRDGRVSQLDQVY 65
Query: 63 IRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQ---AARGRGRGG 114
IRGS +RF I+PDML+NAPMFK +G G A RG++ I+RA AAR RGRG
Sbjct: 66 IRGSMVRFFIVPDMLQNAPMFKRVGPNAMKGRGIGTA-RGRATIMRALTIFAAR-RGRGV 123
Query: 115 PPQRGGR 121
P RG R
Sbjct: 124 PAARGIR 130
>gi|336269505|ref|XP_003349513.1| hypothetical protein SMAC_03101 [Sordaria macrospora k-hell]
gi|380093412|emb|CCC09070.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 116
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 86/112 (76%), Gaps = 4/112 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHI+T E T+G +RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAGRGKSGILRAQAARGRG 111
YIRGS +RF I+PDML+NAPMF+ + +G G A RG++ + RA+A GRG
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRNVRGRGVGLA-RGRATVSRARAG-GRG 113
>gi|357519697|ref|XP_003630137.1| Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula]
gi|355524159|gb|AET04613.1| Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula]
gi|388503694|gb|AFK39913.1| unknown [Medicago truncatula]
Length = 131
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 86/123 (69%), Gaps = 6/123 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E +G+L+RG ++E EDN NC + +T T +DGK + ++
Sbjct: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKTSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-----AGRGKSGILRAQAARGRGRGGPP 116
+IRGSK+RF+++PDMLKNAPMFK G GRG++ +RA+ A+ GRG PP
Sbjct: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRGAPP 122
Query: 117 QRG 119
RG
Sbjct: 123 GRG 125
>gi|255539216|ref|XP_002510673.1| small nuclear ribonucleoprotein, putative [Ricinus communis]
gi|223551374|gb|EEF52860.1| small nuclear ribonucleoprotein, putative [Ricinus communis]
Length = 131
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 85/119 (71%), Gaps = 6/119 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GHI+T E +G+L+RG +VE EDN NC + +T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHIVTVELKSGELYRGSMVECEDNWNCQLESITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAA-----GRGKSGILRAQAARGRGRGGP 115
+IRGSK+RF+++PDMLKNAPMFK G + GRG+S +RA+ A+ GR GP
Sbjct: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSASLGVGRGRSVAMRAK-AQAAGRAGP 121
>gi|295658451|ref|XP_002789786.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|225682914|gb|EEH21198.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226282930|gb|EEH38496.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226290365|gb|EEH45849.1| small nuclear ribonucleoprotein Sm D3 [Paracoccidioides
brasiliensis Pb18]
gi|327350126|gb|EGE78983.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
ATCC 18188]
Length = 116
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 3/109 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAAR 108
YIRGS +RF I+PDML+NAPMF +G++G G A RG++ + RA+ R
Sbjct: 67 YIRGSHVRFFIVPDMLRNAPMFRSRGQRGRGVGLA-RGRATVNRARGQR 114
>gi|449546694|gb|EMD37663.1| hypothetical protein CERSUDRAFT_123559 [Ceriporiopsis subvermispora
B]
Length = 127
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 87/124 (70%), Gaps = 8/124 (6%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+P+KLLHE+ GHIIT E G L+RGKL EAEDN+N ++ ++TVT RDG+V + +Y
Sbjct: 6 LGVPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKEITVTQRDGRVSQLDQVY 65
Query: 63 IRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQ 117
IRGS +RF I+PDML+NAPMFK +G G A RG++ I+RA A RGRG P
Sbjct: 66 IRGSMVRFFIVPDMLQNAPMFKRVGPNAMKGRGIGTA-RGRATIMRANAR--RGRGVPAA 122
Query: 118 RGGR 121
RG R
Sbjct: 123 RGIR 126
>gi|119174174|ref|XP_001239448.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|258569991|ref|XP_002543799.1| small nuclear ribonucleoprotein SM D3 [Uncinocarpus reesii 1704]
gi|303314089|ref|XP_003067053.1| small nuclear ribonucleoprotein Sm D3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|237904069|gb|EEP78470.1| small nuclear ribonucleoprotein SM D3 [Uncinocarpus reesii 1704]
gi|240106721|gb|EER24908.1| small nuclear ribonucleoprotein Sm D3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320037285|gb|EFW19222.1| small nuclear ribonucleoprotein Sm D3 [Coccidioides posadasii str.
Silveira]
gi|392869636|gb|EAS28151.2| small nuclear ribonucleoprotein Sm D3 [Coccidioides immitis RS]
Length = 116
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 3/109 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAAR 108
YIRGS +RF I+PDML+NAPMF +G++G G A RG++ + RA+ R
Sbjct: 67 YIRGSHVRFFIVPDMLRNAPMFRTRGQRGRGVGLA-RGRATVNRARGQR 114
>gi|388579924|gb|EIM20243.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 123
Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 88/123 (71%), Gaps = 8/123 (6%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
+PIKL+HE+ GH++T E +G ++RGKL EAEDN+N ++ D+TVT RDG+V + +YI
Sbjct: 3 SVPIKLVHESLGHVVTIELKSGQMYRGKLQEAEDNLNVSLQDITVTARDGRVSQLDQVYI 62
Query: 64 RGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQR 118
RGS I+FL++PDML+NAPMFK +G G A RG++ I+RA A RGRGGPP
Sbjct: 63 RGSMIKFLVVPDMLQNAPMFKRVGPNAMKGRGIGTA-RGRATIMRANAR--RGRGGPPTV 119
Query: 119 GGR 121
G R
Sbjct: 120 GIR 122
>gi|70993910|ref|XP_751802.1| small nuclear ribonucleoprotein SmD3 [Aspergillus fumigatus Af293]
gi|119500466|ref|XP_001266990.1| small nuclear ribonucleoprotein SmD3, putative [Neosartorya
fischeri NRRL 181]
gi|145258404|ref|XP_001402031.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus niger CBS
513.88]
gi|66849436|gb|EAL89764.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
fumigatus Af293]
gi|119415155|gb|EAW25093.1| small nuclear ribonucleoprotein SmD3, putative [Neosartorya
fischeri NRRL 181]
gi|134074637|emb|CAK44670.1| unnamed protein product [Aspergillus niger]
gi|159125281|gb|EDP50398.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
fumigatus A1163]
gi|350632459|gb|EHA20827.1| hypothetical protein ASPNIDRAFT_204683 [Aspergillus niger ATCC
1015]
gi|358370798|dbj|GAA87408.1| small nuclear ribonucleoprotein SmD3 [Aspergillus kawachii IFO
4308]
Length = 116
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 88/114 (77%), Gaps = 6/114 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
YIRGS ++F I+PDML+NAPMF +G++G G A RGK+ + Q ARG+ RG
Sbjct: 67 YIRGSHVKFFIVPDMLRNAPMFRSRGQRGRGVGLA-RGKATV---QRARGQRRG 116
>gi|111226987|ref|XP_001134627.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|90971301|gb|EAS66961.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 146
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 78/101 (77%), Gaps = 3/101 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIGIP+K+LHEA+GHI+T E NG+L+RG L+E+EDNMNC M ++TVT RDG+ M
Sbjct: 1 MSIGIPVKILHEADGHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTARDGRNSQMEY 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFK---GKQGNKAGAAGRGK 98
Y+RGSK+RF+ILPD+LKNAPMFK G+ K A G GK
Sbjct: 61 CYVRGSKVRFIILPDILKNAPMFKRIDGRVVLKGKALGIGK 101
>gi|154299390|ref|XP_001550114.1| hypothetical protein BC1G_10957 [Botryotinia fuckeliana B05.10]
Length = 117
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 84/115 (73%), Gaps = 4/115 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T G ++RGKL+ AEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHVVTLEITTGQVYRGKLLGAEDNMNVQLKDITVTARDGRVSHLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-AGRGKSGILRAQAARGRGRGGP 115
YIRGS +RF I+PDML+NAPMF+ + G RG++ + RA+A+ GRG P
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRNTRGRGVGLARGRATVSRARAS---GRGAP 115
>gi|296810002|ref|XP_002845339.1| small nuclear ribonucleoprotein SM D3 [Arthroderma otae CBS 113480]
gi|238842727|gb|EEQ32389.1| small nuclear ribonucleoprotein SM D3 [Arthroderma otae CBS 113480]
Length = 116
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 3/109 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH+IT E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVITLEITSGHVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAAR 108
YIRGS ++F I+PDML+NAPMF +G++G G A RG++ + RA+ R
Sbjct: 67 YIRGSHVKFFIVPDMLRNAPMFRSRGQRGRGVGLA-RGRATVNRARGQR 114
>gi|302909812|ref|XP_003050156.1| hypothetical protein NECHADRAFT_84991 [Nectria haematococca mpVI
77-13-4]
gi|256731093|gb|EEU44443.1| hypothetical protein NECHADRAFT_84991 [Nectria haematococca mpVI
77-13-4]
Length = 384
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 87/113 (76%), Gaps = 4/113 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHI+T E T+G +RGKL++AEDNMN + D+TVT RDG+V + +
Sbjct: 274 TIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHLDQV 333
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAGRGKSGILRAQAARGRGR 112
YIRGS +RF I+PDML+NAPMF+ + +G G A RG++ + RA+A GRGR
Sbjct: 334 YIRGSHVRFFIVPDMLRNAPMFRSRNVRGRGVGLA-RGRATVSRARAG-GRGR 384
>gi|315044655|ref|XP_003171703.1| small nuclear ribonucleoprotein SM D3 [Arthroderma gypseum CBS
118893]
gi|327297404|ref|XP_003233396.1| small nuclear ribonucleoprotein Sm D3 [Trichophyton rubrum CBS
118892]
gi|311344046|gb|EFR03249.1| small nuclear ribonucleoprotein SM D3 [Arthroderma gypseum CBS
118893]
gi|326464702|gb|EGD90155.1| small nuclear ribonucleoprotein Sm D3 [Trichophyton rubrum CBS
118892]
gi|326472436|gb|EGD96445.1| pre-mRNA splicing factor [Trichophyton tonsurans CBS 112818]
gi|326481659|gb|EGE05669.1| small nuclear ribonucleoprotein D3 polypeptide [Trichophyton
equinum CBS 127.97]
Length = 116
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 85/109 (77%), Gaps = 3/109 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGHVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAAR 108
YIRGS ++F I+PDML+NAPMF +G++G G A RG++ + RA+ R
Sbjct: 67 YIRGSHVKFFIVPDMLRNAPMFRSRGQRGRGVGLA-RGRATVNRARGQR 114
>gi|388502716|gb|AFK39424.1| unknown [Lotus japonicus]
Length = 133
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 10/127 (7%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E +G+L+RG ++E EDN NC + +T T +DGK + ++
Sbjct: 6 SLGIPVKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKTSQLEHV 65
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-----AGRGKSGILRAQA-ARGR----G 111
+IRGSK+RF+++PDMLKNAPMFK G GRG++ +RA+A + GR G
Sbjct: 66 FIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKAQSAGRGAAPG 125
Query: 112 RGGPPQR 118
RG PP R
Sbjct: 126 RGAPPVR 132
>gi|449512675|ref|XP_004164112.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis
sativus]
Length = 132
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 87/124 (70%), Gaps = 6/124 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH+++ E +G+L+RG ++E EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-----AGRGKSGILRAQAARGRGRGGPP 116
+IRGSK+RF+++PDMLKNAPMFK G GRG++ +RA+ A+ GRG P
Sbjct: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRGSAP 122
Query: 117 QRGG 120
RG
Sbjct: 123 GRGA 126
>gi|322694233|gb|EFY86068.1| small nuclear ribonucleoprotein Sm D3 [Metarhizium acridum CQMa
102]
Length = 113
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 83/107 (77%), Gaps = 3/107 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHI+T E T+G +RGKL++AEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHLEQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAGRGKSGILRAQA 106
YIRGS +RF I+PDML+NAPMF+ + +G G A RG++ + RA+A
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRNLRGRGVGLA-RGRATVSRARA 109
>gi|389741899|gb|EIM83087.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 126
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 87/124 (70%), Gaps = 8/124 (6%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+P+KLLHE+ GH+IT E G L+RGKL EAEDN+N ++ ++TVT RDG++ + +Y
Sbjct: 5 LGVPVKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKEITVTGRDGRISQLDQVY 64
Query: 63 IRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQ 117
IRGS +RF I+PDML+NAPMFK +G G A RG++ I+RA A RGRG P
Sbjct: 65 IRGSMVRFFIVPDMLQNAPMFKRVGPNAMRGRGIGTA-RGRATIMRANAR--RGRGVPAA 121
Query: 118 RGGR 121
RG R
Sbjct: 122 RGIR 125
>gi|330802087|ref|XP_003289052.1| hypothetical protein DICPUDRAFT_79815 [Dictyostelium purpureum]
gi|325080886|gb|EGC34423.1| hypothetical protein DICPUDRAFT_79815 [Dictyostelium purpureum]
Length = 149
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 71/84 (84%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIGIP+K+LHEA+GHI+T E NG+L+RG L+E+EDNMNC M ++TVT +DG+ M
Sbjct: 1 MSIGIPVKILHEADGHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTAKDGRNSQMEY 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFK 84
Y+RGSK+RF+ILPD+LKNAPMFK
Sbjct: 61 CYVRGSKVRFIILPDILKNAPMFK 84
>gi|378726753|gb|EHY53212.1| small nuclear ribonucleoprotein D3 [Exophiala dermatitidis
NIH/UT8656]
Length = 116
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 84/109 (77%), Gaps = 3/109 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+T T RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTLELTSGQVYRGKLLEAEDNMNVQLKDITATARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAAR 108
YIRGS +RF I+PDML+NAPMF +G +G G A RG++ + RA+A R
Sbjct: 67 YIRGSHVRFFIVPDMLRNAPMFRTRGIRGRGVGLA-RGRATVNRARAGR 114
>gi|351721470|ref|NP_001237722.1| uncharacterized protein LOC100305856 [Glycine max]
gi|356525557|ref|XP_003531391.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Glycine max]
gi|255626793|gb|ACU13741.1| unknown [Glycine max]
Length = 131
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 85/123 (69%), Gaps = 6/123 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E +G+L+RG ++E EDN NC + +T T +DGK + ++
Sbjct: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-----AGRGKSGILRAQAARGRGRGGPP 116
+IRGSK+RF+++PDMLKNAPMFK G GRG++ +RA+ A+ GRG P
Sbjct: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRGAAP 122
Query: 117 QRG 119
RG
Sbjct: 123 GRG 125
>gi|154286938|ref|XP_001544264.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407905|gb|EDN03446.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|225555382|gb|EEH03674.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces capsulatus
G186AR]
gi|240273870|gb|EER37389.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325094696|gb|EGC48006.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces capsulatus H88]
Length = 116
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 84/109 (77%), Gaps = 3/109 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E +G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEILSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAAR 108
YIRGS +RF I+PDML+NAPMF +G++G G A RG++ + RA+ R
Sbjct: 67 YIRGSHVRFFIVPDMLRNAPMFRSRGQRGRGVGLA-RGRATVNRARGQR 114
>gi|62664874|ref|XP_577651.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
gi|109508438|ref|XP_001063748.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
Length = 142
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 87/114 (76%), Gaps = 2/114 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG PI++L EA+G+++T ET G+++ GKL+EAEDNMNC M+++TVT+RDG V
Sbjct: 1 MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQ-AARGRGR 112
+YI +KIRF ILP+MLKNAP+ + K N+ AG+GK+ IL+AQ AARGRG
Sbjct: 61 VYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGH 114
>gi|402224280|gb|EJU04343.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 127
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 7/125 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IG+PIKLLHE+ GH+IT E G +RGKL +AED++N ++ D+TVT RDG+V + ++
Sbjct: 4 TIGVPIKLLHESLGHVITVELKTGQTYRGKLADAEDSLNISLRDITVTGRDGRVSQLDSV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGPP 116
YIRGS +RF I+PDML+NAPMFK +G G A RG++ I+RA A RGRG P
Sbjct: 64 YIRGSMVRFFIVPDMLQNAPMFKRVGPNAMKGRGIGTA-RGRATIMRANARRGRG-APQP 121
Query: 117 QRGGR 121
RG R
Sbjct: 122 ARGIR 126
>gi|116780936|gb|ABK21888.1| unknown [Picea sitchensis]
Length = 133
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 92/129 (71%), Gaps = 12/129 (9%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E +G+L+RG ++E EDN NC + +T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKSGELYRGNMIECEDNWNCQLEGITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMF-------KGKQGNKAGAAGRGKSGILRAQAARGRGRGG 114
+IRGSK+RF+++PDML+NAPMF KGK G+ G GRG++ +RA+ A+ GR G
Sbjct: 64 FIRGSKVRFMVIPDMLRNAPMFRRLDARIKGK-GSSIG-VGRGRAVAMRAR-AQATGRAG 120
Query: 115 PPQRGGRGG 123
PP GR G
Sbjct: 121 PP--AGRAG 127
>gi|403373657|gb|EJY86747.1| Small nuclear ribonucleoprotein [Oxytricha trifallax]
Length = 692
Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats.
Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 8/113 (7%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIKLLHEAE H+IT E +G+L+RG L+EAED MN + DV VT +DG+ +
Sbjct: 1 MSIGVPIKLLHEAENHVITVELKSGELYRGYLMEAEDTMNMRLDDVYVTGKDGRQYHLDQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+++RGS++RF+I+PDMLKN+PMFK A A +GK+ +L A+GRGRG
Sbjct: 61 VFVRGSQVRFIIIPDMLKNSPMFK----RIANQAKKGKNALL----AKGRGRG 105
>gi|67601489|ref|XP_666403.1| aspartyl protease-like [Cryptosporidium hominis TU502]
gi|54657392|gb|EAL36172.1| aspartyl protease-like [Cryptosporidium hominis]
Length = 128
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 79/122 (64%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+IGIP+KLL+E GHI+T E +GDL+RG L EDNMNC + V T RDGK +
Sbjct: 1 MTIGIPLKLLYEGLGHIVTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKPVSLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGG 120
Y+RGS+IRF ILPDMLKNAPMFK K A+ G +G +A AAR RG R G
Sbjct: 61 CYLRGSQIRFCILPDMLKNAPMFKLAANAKNRASVLGAAGNKKAFAARFISRGTSRGRSG 120
Query: 121 RG 122
RG
Sbjct: 121 RG 122
>gi|402079014|gb|EJT74279.1| small nuclear ribonucleoprotein Sm D3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 130
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 80/105 (76%), Gaps = 3/105 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHIIT E T G +RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIITLEITTGQTYRGKLIEAEDNMNIQLRDITVTARDGRVSHLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAGRGKSGILRA 104
YIRGS +RF I+PDML+NAPMF+ + +G G A RG++ + RA
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRNVRGRGVGLA-RGRATVNRA 107
>gi|392577030|gb|EIW70160.1| hypothetical protein TREMEDRAFT_38820 [Tremella mesenterica DSM
1558]
Length = 124
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 85/116 (73%), Gaps = 6/116 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++G+P+KLLHE+ GH++T E G+++RGKL+EAEDN+N A+ D+TVT RDG+V M +
Sbjct: 3 NLGVPVKLLHESLGHVVTVELKTGEMYRGKLMEAEDNLNIALKDITVTARDGRVSQMDMV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGR 112
YIRGS IRF+I+PD+L +APMFK +G GAA RG++ I RA A RG R
Sbjct: 63 YIRGSMIRFVIVPDLLSSAPMFKRVGPNAMRGRGIGAA-RGRATIQRANARRGTTR 117
>gi|6730225|pdb|1D3B|A Chain A, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730227|pdb|1D3B|C Chain C, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730229|pdb|1D3B|E Chain E, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730231|pdb|1D3B|G Chain G, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730233|pdb|1D3B|I Chain I, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730235|pdb|1D3B|K Chain K, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
Length = 75
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 67/75 (89%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPD 75
+YIRG KIRFLILPD
Sbjct: 61 VYIRGCKIRFLILPD 75
>gi|290983277|ref|XP_002674355.1| predicted protein [Naegleria gruberi]
gi|284087945|gb|EFC41611.1| predicted protein [Naegleria gruberi]
Length = 134
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 79/112 (70%), Gaps = 3/112 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLLHEAE HII+ ET +G+L+RGKL+EAED+MN + DVTVT R+G+ M +
Sbjct: 4 NIGIPIKLLHEAESHIISLETKSGELYRGKLIEAEDSMNVQLVDVTVTHRNGQQSAMNTV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
YIRGSKIR+ +LPD+L+ APMFK G GRG + + RG G G
Sbjct: 64 YIRGSKIRYFVLPDILQKAPMFKVVDSTVKG-QGRGYGS--QTKVHRGSGLG 112
>gi|326428962|gb|EGD74532.1| small nuclear ribonucleoprotein Sm D3 [Salpingoeca sp. ATCC
50818]
Length = 128
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 69/91 (75%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+ +P+KL+HEAEGH IT E NG+++RGKL+EAEDNMN M DVT T RDG+V + +Y
Sbjct: 4 VSVPVKLMHEAEGHTITIELKNGEMYRGKLIEAEDNMNSQMRDVTFTARDGQVTQLDTVY 63
Query: 63 IRGSKIRFLILPDMLKNAPMFKGKQGNKAGA 93
IRGSKI+F +LPDMLKNAP FK +G G
Sbjct: 64 IRGSKIKFFVLPDMLKNAPFFKRAKGAAVGV 94
>gi|449455595|ref|XP_004145538.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis
sativus]
Length = 132
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 86/124 (69%), Gaps = 6/124 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH+++ E +G+L+RG ++E EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-----AGRGKSGILRAQAARGRGRGGPP 116
+IRGSK+ F+++PDMLKNAPMFK G GRG++ +RA+ A+ GRG P
Sbjct: 64 FIRGSKVSFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRGSAP 122
Query: 117 QRGG 120
RG
Sbjct: 123 GRGA 126
>gi|169846820|ref|XP_001830124.1| small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea
okayama7#130]
gi|116508894|gb|EAU91789.1| small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea
okayama7#130]
Length = 126
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 85/120 (70%), Gaps = 8/120 (6%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+P+KLLHE+ GHIIT E G L+RGKL EAEDN+N ++ D+TVT RDG+V + +Y
Sbjct: 6 LGVPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVY 65
Query: 63 IRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQ 117
IRGS IRF I+PDML+NAPMFK +G G A RG++ I+RA+ RGRG P+
Sbjct: 66 IRGSMIRFFIVPDMLQNAPMFKRVGPNAMRGRGIGTA-RGRATIMRAR--RGRGVAPAPR 122
>gi|116206378|ref|XP_001228998.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183079|gb|EAQ90547.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 115
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 70/85 (82%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHI+T E T+G +RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK 86
YIRGS +RF I+PDML+NAPMF+ +
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSR 88
>gi|85102544|ref|XP_961352.1| small nuclear ribonucleoprotein Sm D3 [Neurospora crassa OR74A]
gi|12718393|emb|CAC28701.1| probable small nuclear ribonucleoprotein SM D3 [Neurospora
crassa]
gi|28922896|gb|EAA32116.1| small nuclear ribonucleoprotein Sm D3 [Neurospora crassa OR74A]
Length = 116
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 70/85 (82%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHI+T E T+G +RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK 86
YIRGS +RF I+PDML+NAPMF+ +
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSR 88
>gi|440790083|gb|ELR11371.1| LSM domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 136
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIGIPIK+ HEA+GH +T E G+++RG+L + EDNMNC MA++ T RDG+V +
Sbjct: 1 MSIGIPIKVFHEAKGHTVTIELKTGEVYRGQLGDTEDNMNCQMANIQYTARDGRVTNLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRA 104
+YIRGSKIRF+ILPDMLKNAPMF+ KA G+G +G+ +A
Sbjct: 61 VYIRGSKIRFMILPDMLKNAPMFRNVDPKKAQGRGKG-AGVQKA 103
>gi|345560308|gb|EGX43433.1| hypothetical protein AOL_s00215g169 [Arthrobotrys oligospora ATCC
24927]
Length = 123
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 84/111 (75%), Gaps = 3/111 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
SIGIP+KLL E++GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 3 SIGIPLKLLGESQGHVVTLELTSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAGRGKSGILRAQAARGR 110
YIRGS +RF I+PDML+NAPMF+ + +G G A RG++ + RA+ + R
Sbjct: 63 YIRGSHVRFFIVPDMLRNAPMFRSRAVRGRGVGMA-RGRATVNRAKTQQRR 112
>gi|328866082|gb|EGG14468.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 170
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 3/99 (3%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+P+K+LHEA+ HI+T E NG+++RG L+++EDNMNC + VT+T RDGK +
Sbjct: 1 MSIGVPVKILHEADSHIVTIELKNGEMYRGTLMQSEDNMNCKLKIVTMTARDGKQSQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKS 99
IYIRGSKIRF+ILPD+LKNAPMFK G RGKS
Sbjct: 61 IYIRGSKIRFIILPDILKNAPMFKRIDGK---TVLRGKS 96
>gi|302830880|ref|XP_002947006.1| small nuclear ribonucleoprotein [Volvox carteri f. nagariensis]
gi|300268050|gb|EFJ52232.1| small nuclear ribonucleoprotein [Volvox carteri f. nagariensis]
Length = 129
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 70/82 (85%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
IGIP+KLLHEAEGH++T E +G+++RG+L EAEDNMN + DVT T RDG+V +A+I+
Sbjct: 8 IGIPVKLLHEAEGHVVTVELKSGEMYRGELFEAEDNMNVQLKDVTATGRDGRVSQLAHIF 67
Query: 63 IRGSKIRFLILPDMLKNAPMFK 84
IRGS++RF I+PDMLKNAPMFK
Sbjct: 68 IRGSRVRFFIIPDMLKNAPMFK 89
>gi|357145745|ref|XP_003573751.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Brachypodium
distachyon]
Length = 134
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 83/115 (72%), Gaps = 5/115 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E G+++RG ++E EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-----AGRGKSGILRAQAARGRG 111
+IRGS++RF+I+PDMLKNAPMFK + G GRG++ +RA++A GR
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVGRGRAVAMRARSAGGRS 118
>gi|389644246|ref|XP_003719755.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae 70-15]
gi|351639524|gb|EHA47388.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae 70-15]
gi|440466514|gb|ELQ35778.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae Y34]
gi|440477082|gb|ELQ58226.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae P131]
Length = 119
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 80/105 (76%), Gaps = 3/105 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHIIT E T G +RGKL++AEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIITLEITTGQTYRGKLIDAEDNMNIQLRDITVTARDGRVSHLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAGRGKSGILRA 104
YIRGS +RF I+PDML+NAPMF+ + +G G A RG++ + RA
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSRNVRGRGVGLA-RGRATVNRA 107
>gi|66362186|ref|XP_628057.1| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum
Iowa II]
gi|46227630|gb|EAK88565.1| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum
Iowa II]
Length = 143
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 78/121 (64%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+IGIP+KLL+E GHI+T E +GDL+RG L EDNMNC + V T RDGK +
Sbjct: 23 MTIGIPLKLLYEGLGHIVTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKPVSLEQ 82
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGG 120
Y+RGS+IRF ILPDMLKNAPMFK K A+ G +G +A AAR RG R G
Sbjct: 83 CYLRGSQIRFCILPDMLKNAPMFKLAANAKNRASVLGAAGNKKAFAARFISRGTSRGRSG 142
Query: 121 R 121
R
Sbjct: 143 R 143
>gi|398407783|ref|XP_003855357.1| hypothetical protein MYCGRDRAFT_36580 [Zymoseptoria tritici IPO323]
gi|339475241|gb|EGP90333.1| hypothetical protein MYCGRDRAFT_36580 [Zymoseptoria tritici IPO323]
Length = 119
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 85/123 (69%), Gaps = 10/123 (8%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA GH +T E T+G +RGKL+EAEDNMN + ++ VT RDG+V + +
Sbjct: 4 TIGIPIKLLNEATGHQVTVEITSGQTYRGKLIEAEDNMNVQLENINVTQRDGRVTHLDRV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAA--RGRGRGGPPQRG 119
YIRGS +R I+PDML+NAPMF+ K G GRG G+ R +A R RG GGP RG
Sbjct: 64 YIRGSHVRLFIVPDMLRNAPMFRSK-----GVRGRG-VGLARGRATVNRARGSGGP--RG 115
Query: 120 GRG 122
RG
Sbjct: 116 ARG 118
>gi|195656155|gb|ACG47545.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E G+++RG LVE EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-----AGRGKSGILRAQAAR 108
+IRGS++RF+I+PDMLKNAPMFK + G GRG++ +RA+A R
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVGRGRAVAMRARAGR 115
>gi|159480580|ref|XP_001698360.1| small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
gi|158282100|gb|EDP07853.1| small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
Length = 127
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 71/82 (86%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
IGIP+KLLHEAEGH++T E +G+++RG+L +AEDNMNC + DVT T RDG+V +A+++
Sbjct: 8 IGIPVKLLHEAEGHVVTVELKSGEMYRGELCDAEDNMNCQLKDVTATGRDGRVTQLAHLF 67
Query: 63 IRGSKIRFLILPDMLKNAPMFK 84
IRGS++RF I+PDMLKNAPMFK
Sbjct: 68 IRGSRVRFFIIPDMLKNAPMFK 89
>gi|380480731|emb|CCF42263.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 138
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 70/85 (82%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHI+T E T+G +RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK 86
YIRGS +RF I+PDML+NAPMF+ +
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSR 88
>gi|302679434|ref|XP_003029399.1| hypothetical protein SCHCODRAFT_16877 [Schizophyllum commune H4-8]
gi|300103089|gb|EFI94496.1| hypothetical protein SCHCODRAFT_16877 [Schizophyllum commune H4-8]
Length = 125
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 85/120 (70%), Gaps = 8/120 (6%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+P+KLLHE+ GHIIT E G L+RGKL EAEDN+N ++ ++TVT RDG+V + +Y
Sbjct: 5 LGVPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKEITVTGRDGRVSQLDQVY 64
Query: 63 IRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQ 117
IRGS IRF I+PDML+NAPMFK +G G A RG++ I+RA+ RGRG P+
Sbjct: 65 IRGSMIRFFIVPDMLQNAPMFKRVGPNAMKGRGIGTA-RGRATIMRAR--RGRGVAPTPR 121
>gi|400601331|gb|EJP68974.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 115
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 69/85 (81%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHIIT E T+G +RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIITLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK 86
YIRGS +RF I+PDML+NAPMF+
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSS 88
>gi|46123175|ref|XP_386141.1| hypothetical protein FG05965.1 [Gibberella zeae PH-1]
Length = 365
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 70/85 (82%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHI+T E T+G +RGKL++AEDNMN + D+TVT RDG+V + +
Sbjct: 254 TIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHLDQV 313
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK 86
YIRGS +RF I+PDML+NAPMF+ +
Sbjct: 314 YIRGSHVRFFIVPDMLRNAPMFRSR 338
>gi|18394883|ref|NP_564119.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|8886923|gb|AAF80609.1|AC069251_2 F2D10.7 [Arabidopsis thaliana]
gi|15724292|gb|AAL06539.1|AF412086_1 At1g20580/F2D10_6 [Arabidopsis thaliana]
gi|20334748|gb|AAM16235.1| At1g20580/F2D10_6 [Arabidopsis thaliana]
gi|332191869|gb|AEE29990.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
Length = 131
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 81/114 (71%), Gaps = 5/114 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GHI+T E +G+L+RG ++E EDN NC + D+T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGP 115
+IRGSK+RF+++PD+LK+APMFK + A +GKS L RG RG P
Sbjct: 64 FIRGSKVRFMVIPDILKHAPMFK-----RLDARIKGKSSSLGVGRGRGAMRGKP 112
>gi|320589183|gb|EFX01645.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 116
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 70/85 (82%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHI+T E T+G +RG+L+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIVTLEITSGQTYRGRLLEAEDNMNVQLKDITVTARDGRVSHLEQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK 86
YIRGS +RF I+PDML+NAPMF+ +
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSR 88
>gi|164661203|ref|XP_001731724.1| hypothetical protein MGL_0992 [Malassezia globosa CBS 7966]
gi|159105625|gb|EDP44510.1| hypothetical protein MGL_0992 [Malassezia globosa CBS 7966]
Length = 126
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 84/121 (69%), Gaps = 6/121 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++GIP+KLLHE GH +T E G +RG+L +AEDN N +M D+ VT RDGK + ++
Sbjct: 3 TVGIPVKLLHEGLGHTVTIELKGGATYRGRLFDAEDNFNISMKDIAVTARDGKQTHLDSV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGRGGPP 116
YIRG+ IRF+++PDML+ APMFK +G G+A RG++ I+RAQA RGRG G P
Sbjct: 63 YIRGNMIRFMVVPDMLQQAPMFKRVGPNAMKGRGIGSA-RGRATIMRAQARRGRGPSGRP 121
Query: 117 Q 117
Q
Sbjct: 122 Q 122
>gi|302796635|ref|XP_002980079.1| hypothetical protein SELMODRAFT_112116 [Selaginella
moellendorffii]
gi|300152306|gb|EFJ18949.1| hypothetical protein SELMODRAFT_112116 [Selaginella
moellendorffii]
Length = 95
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 70/83 (84%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEAEGH++T E +G+L+RG L+E EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAEGHVVTVELKSGELYRGTLIECEDNWNCQLENITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
++RGSK+RF+I+PDMLKNAPMFK
Sbjct: 64 FVRGSKVRFMIIPDMLKNAPMFK 86
>gi|15223010|ref|NP_177757.1| snRNP core protein SMD3 [Arabidopsis thaliana]
gi|6554488|gb|AAF16670.1|AC012394_19 putative small nuclear ribonucleoprotein Sm D3; 79504-78381
[Arabidopsis thaliana]
gi|6573711|gb|AAF17631.1|AC009978_7 T23E18.23 [Arabidopsis thaliana]
gi|14190503|gb|AAK55732.1|AF380651_1 At1g76300/F15M4_20 [Arabidopsis thaliana]
gi|15809764|gb|AAL06810.1| At1g76300/F15M4_20 [Arabidopsis thaliana]
gi|21592857|gb|AAM64807.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]
gi|332197701|gb|AEE35822.1| snRNP core protein SMD3 [Arabidopsis thaliana]
Length = 128
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 80/107 (74%), Gaps = 3/107 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHE+ GHI++ E +G+L+RG ++E EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAA---GRGKSGILRAQ 105
+IRGS +RFL++PDMLKNAPMFK +G A+ GRG+ +RA+
Sbjct: 64 FIRGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGRGAAMRAK 110
>gi|297845022|ref|XP_002890392.1| hypothetical protein ARALYDRAFT_335306 [Arabidopsis lyrata subsp.
lyrata]
gi|297336234|gb|EFH66651.1| hypothetical protein ARALYDRAFT_335306 [Arabidopsis lyrata subsp.
lyrata]
Length = 142
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 82/118 (69%), Gaps = 11/118 (9%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GHI+T E +G+L+RG ++E EDN NC + D+T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRG 119
+IRGSK+RF+++PD+LK+APMFK + A +GKS L G GRG RG
Sbjct: 64 FIRGSKVRFMVIPDILKHAPMFK-----RLDARIKGKSSSL------GVGRGRAAMRG 110
>gi|58264244|ref|XP_569278.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|134107716|ref|XP_777469.1| hypothetical protein CNBB0430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|321248376|ref|XP_003191109.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|50260161|gb|EAL22822.1| hypothetical protein CNBB0430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223928|gb|AAW41971.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|317457576|gb|ADV19322.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
gi|405118776|gb|AFR93550.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii H99]
Length = 124
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 83/116 (71%), Gaps = 6/116 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++G+P+KLLHE+ GHIIT E G+++RGKL+EAED +N A+ ++TVT RDG+V + +
Sbjct: 3 NLGVPVKLLHESLGHIITVELKTGEMYRGKLMEAEDTLNIALREITVTARDGRVSQLEQV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGRGR 112
YIRGS IRF+I+PD+L APMFK +G GAA RG++ I RA A RG R
Sbjct: 63 YIRGSMIRFIIVPDLLAQAPMFKRIGPNAMRGRGIGAA-RGRATIQRANARRGTTR 117
>gi|302410425|ref|XP_003003046.1| small nuclear ribonucleoprotein Sm D3 [Verticillium albo-atrum
VaMs.102]
gi|261358070|gb|EEY20498.1| small nuclear ribonucleoprotein Sm D3 [Verticillium albo-atrum
VaMs.102]
Length = 154
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 70/85 (82%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHIIT E T+G +RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIITLEITSGQTYRGKLLEAEDNMNIQLKDITVTARDGRVSHLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK 86
YIRGS +RF I+PDML+NAPMF+ +
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSR 88
>gi|414865765|tpg|DAA44322.1| TPA: hypothetical protein ZEAMMB73_746512 [Zea mays]
Length = 126
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 79/110 (71%), Gaps = 5/110 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E G+++RG LVE EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-----AGRGKSGILRAQA 106
+IRGS++RF+I+PDMLKNAPMFK + G GRG++ +RA+
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVGRGRAVAMRARC 113
>gi|342888751|gb|EGU87970.1| hypothetical protein FOXB_01453 [Fusarium oxysporum Fo5176]
gi|408397687|gb|EKJ76827.1| hypothetical protein FPSE_03013 [Fusarium pseudograminearum
CS3096]
Length = 115
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 70/85 (82%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GHI+T E T+G +RGKL++AEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK 86
YIRGS +RF I+PDML+NAPMF+ +
Sbjct: 64 YIRGSHVRFFIVPDMLRNAPMFRSR 88
>gi|239613701|gb|EEQ90688.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
ER-3]
Length = 123
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 85/116 (73%), Gaps = 10/116 (8%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDMLK-------NAPMF--KGKQGNKAGAAGRGKSGILRAQAAR 108
YIRGS +RF I+PDML+ NAPMF +G++G G A RG++ + RA+ R
Sbjct: 67 YIRGSHVRFFIVPDMLRYGINITPNAPMFRSRGQRGRGVGLA-RGRATVNRARGQR 121
>gi|428184458|gb|EKX53313.1| hypothetical protein GUITHDRAFT_84386 [Guillardia theta CCMP2712]
Length = 130
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 68/84 (80%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+P+KLLHEAE HIIT E +G+L+RG L EAEDNMNC M +VT+T RDG + +
Sbjct: 1 MSIGVPVKLLHEAESHIITVELKSGELYRGTLQEAEDNMNCNMTNVTMTGRDGSISTLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFK 84
++IRG IRF+ILPD+LKNAPMFK
Sbjct: 61 VFIRGGLIRFVILPDILKNAPMFK 84
>gi|19112491|ref|NP_595699.1| Sm snRNP core protein Smd3 [Schizosaccharomyces pombe 972h-]
gi|12230614|sp|Q9UUC6.1|SMD3_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|5689996|emb|CAB52041.1| Sm snRNP core protein Smd3 [Schizosaccharomyces pombe]
Length = 97
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 70/96 (72%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+ + IKLLHE +GHI+T E NG +RGKL+EAEDNMNC M D++VT RDG+V + +Y
Sbjct: 1 MSLCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVY 60
Query: 63 IRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGK 98
IRGS IRFLI+PDML+NAPMFK G RG+
Sbjct: 61 IRGSHIRFLIVPDMLRNAPMFKVGPGRSVPLPTRGR 96
>gi|313214383|emb|CBY42774.1| unnamed protein product [Oikopleura dioica]
Length = 137
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M++G+P+K+LHEAEGH +T E+ G+L+RG L+EAEDNMN + DV+ T+RDG+ ++N
Sbjct: 1 MTLGVPVKVLHEAEGHTVTVESATGELYRGVLIEAEDNMNMQLRDVSATYRDGRSAHLSN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFK-GKQGNKAGAAGRG 97
I+IRGS++RF ILPDMLKNAPM K+ + GRG
Sbjct: 61 IFIRGSQVRFAILPDMLKNAPMLNVDKKSKQPRGLGRG 98
>gi|223975955|gb|ACN32165.1| unknown [Zea mays]
gi|413935154|gb|AFW69705.1| hypothetical protein ZEAMMB73_559735 [Zea mays]
Length = 125
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 79/110 (71%), Gaps = 5/110 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E G+++RG +VE EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGN-----KAGAAGRGKSGILRAQA 106
+IRGS++RF+I+PDMLKNAPMFK + A GRG++ +RA+
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAVGVGRGRAVAMRARV 113
>gi|21555384|gb|AAM63846.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]
Length = 131
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 80/114 (70%), Gaps = 5/114 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GHI+T E +G+L+RG ++E EDN NC + D+T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGP 115
+IRGSK+RF+++PD+LK+APMFK + A +GKS L R RG P
Sbjct: 64 FIRGSKVRFMVIPDILKHAPMFK-----RLDARIKGKSSSLGVGRGRAAMRGKP 112
>gi|313220248|emb|CBY31107.1| unnamed protein product [Oikopleura dioica]
gi|313235868|emb|CBY11255.1| unnamed protein product [Oikopleura dioica]
Length = 162
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 72/90 (80%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M++G+P+K+LHEAEGH +T E+ G+L+RG L+EAEDNMN + DV+ T+RDG+ ++N
Sbjct: 1 MTLGVPVKVLHEAEGHTVTVESATGELYRGVLIEAEDNMNMQLRDVSATYRDGRSAHLSN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNK 90
I+IRGS++RF ILPDMLKNAPM + +K
Sbjct: 61 IFIRGSQVRFAILPDMLKNAPMLNVDKKSK 90
>gi|212538167|ref|XP_002149239.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|210068981|gb|EEA23072.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
Length = 114
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 83/109 (76%), Gaps = 5/109 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+E DNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLE--DNMNVQLKDITVTARDGRVSHLDQV 64
Query: 62 YIRGSKIRFLILPDMLKNAPMF--KGKQGNKAGAAGRGKSGILRAQAAR 108
YIRGS +RF I+PDML+NAPMF +G++G G A RGK+ + RA+ R
Sbjct: 65 YIRGSHVRFFIVPDMLRNAPMFRTRGQRGRGVGLA-RGKATVNRARGQR 112
>gi|255081394|ref|XP_002507919.1| predicted protein [Micromonas sp. RCC299]
gi|226523195|gb|ACO69177.1| predicted protein [Micromonas sp. RCC299]
Length = 123
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 66/82 (80%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
IGIP+KLLHEAEGH +T E GD +RG L+EAEDN NC + +T T RDG+V + N+Y
Sbjct: 9 IGIPVKLLHEAEGHTVTIELKTGDTYRGTLLEAEDNWNCQLEGITHTGRDGRVNQLENVY 68
Query: 63 IRGSKIRFLILPDMLKNAPMFK 84
+RGSKIRFLI+PDMLKNAPMFK
Sbjct: 69 VRGSKIRFLIIPDMLKNAPMFK 90
>gi|388516583|gb|AFK46353.1| unknown [Lotus japonicus]
Length = 132
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 78/110 (70%), Gaps = 5/110 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHE+ GHI++ E +G+L+RG ++E EDN NC + +T T +DGK + ++
Sbjct: 4 SLGIPVKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-----AGRGKSGILRAQA 106
+IRGSK+RF+++PDMLKNAPMFK G GRG++ +RA+A
Sbjct: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARVKGKGASLGVGRGRAVAMRAKA 113
>gi|452822235|gb|EME29256.1| small nuclear ribonucleoprotein D3 [Galdieria sulphuraria]
Length = 125
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 69/92 (75%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+GIPIKLLHEA +T ET +GDL+RG L +AEDNMNC + VT T RDGK+ P +
Sbjct: 1 MSVGIPIKLLHEAISQTVTVETKSGDLYRGTLYDAEDNMNCQLKKVTCTGRDGKITPFEH 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAG 92
+++RGSKIRF I+PD+L NAPMFK + K G
Sbjct: 61 VFLRGSKIRFFIVPDILANAPMFKRVEAIKEG 92
>gi|168011639|ref|XP_001758510.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168011861|ref|XP_001758621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690120|gb|EDQ76488.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690231|gb|EDQ76599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 137
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 90/129 (69%), Gaps = 8/129 (6%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEAEGHI+T E +G+++RG L+E EDN N + +T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAEGHIVTVELKSGEVYRGSLIECEDNWNSQLESITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK------GKQGNKAGAAGRGKSGILRAQAARGRGRGG- 114
+IRGSK+R++I+PDMLKNAPMFK +G+ GRG++ ++A+ AR RG
Sbjct: 64 FIRGSKVRYMIIPDMLKNAPMFKRLDAKIKGKGSSGVGVGRGRASTMQAK-ARSAARGSV 122
Query: 115 PPQRGGRGG 123
PP GGRG
Sbjct: 123 PPPMGGRGA 131
>gi|148909638|gb|ABR17910.1| unknown [Picea sitchensis]
Length = 133
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 79/110 (71%), Gaps = 5/110 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E +G+L+RG ++E EDN NC + +T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKSGELYRGNMIECEDNWNCQLEGITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAG-----AAGRGKSGILRAQA 106
+IRGSK+RF+++PDML+NAPMF+ G GRG++ +RA+A
Sbjct: 64 FIRGSKVRFMVIPDMLRNAPMFRRLDARIKGRGSSLGVGRGRAVAMRARA 113
>gi|393244822|gb|EJD52333.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 126
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 68/83 (81%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++G+P+KLLHEA GHIIT E G L+RGKL+EAED++N ++ D+TVT RDG+V + +
Sbjct: 4 TLGVPVKLLHEAMGHIITVELKTGQLYRGKLLEAEDSLNISLKDITVTGRDGRVSQLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
YIRGS IRF I+PDML+NAPMFK
Sbjct: 64 YIRGSMIRFFIVPDMLQNAPMFK 86
>gi|328856039|gb|EGG05162.1| hypothetical protein MELLADRAFT_48913 [Melampsora larici-populina
98AG31]
Length = 138
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 4/108 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IG+P KLLHEA GH+IT E G ++RGKL +AEDN+N ++ D+TVT RDG+V + +
Sbjct: 4 NIGVPTKLLHEALGHVITVELKTGQVYRGKLHDAEDNLNISLKDITVTHRDGRVTQLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK---GKQGNKAGAAGRGKSGILRAQA 106
YIRG IR ++PDML+NAPMFK G +G G A RG++ I RAQA
Sbjct: 64 YIRGPMIRLYVIPDMLQNAPMFKRGTGVKGRGIGTA-RGRATIQRAQA 110
>gi|331242127|ref|XP_003333710.1| small nuclear ribonucleoprotein D3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312700|gb|EFP89291.1| small nuclear ribonucleoprotein D3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 131
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 4/108 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IG+P KLLHEA GH+IT E G ++RGKL +AEDN+N ++ D+TVT RDG+V + +
Sbjct: 4 NIGVPTKLLHEALGHVITVELKTGQVYRGKLHDAEDNLNISLKDITVTHRDGRVTQLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK---GKQGNKAGAAGRGKSGILRAQA 106
YIRG IR ++PDML+NAPMFK G +G G A RG++ I RAQA
Sbjct: 64 YIRGPMIRLYVVPDMLQNAPMFKRGTGVKGRGIGTA-RGRATIQRAQA 110
>gi|225428263|ref|XP_002282385.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Vitis vinifera]
gi|297744494|emb|CBI37756.3| unnamed protein product [Vitis vinifera]
Length = 132
Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 69/83 (83%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E +G+L+RG ++E EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
+IRGSK+RF+++PDMLKNAPMFK
Sbjct: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
>gi|388854781|emb|CCF51674.1| related to small nuclear ribonucleoprotein sm d3 [Ustilago hordei]
Length = 134
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 80/114 (70%), Gaps = 6/114 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIP+KL+HEA GH+IT E G +RG L +AED+ N AM DVT T DGK + NI
Sbjct: 3 TIGIPVKLIHEAVGHVITVELKGGACYRGTLYDAEDSFNVAMKDVTATAPDGKQSHLENI 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGR 110
YIRG+ +RF+I+PDML+ APMFK +G G+A RG++ ILRAQA RGR
Sbjct: 63 YIRGNMLRFIIVPDMLQQAPMFKRIGPNAMKGRGIGSA-RGRATILRAQARRGR 115
>gi|195658123|gb|ACG48529.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 68/83 (81%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E G+++RG LVE EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
+IRGS++RF+I+PDMLKNAPMFK
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFK 86
>gi|297839503|ref|XP_002887633.1| hypothetical protein ARALYDRAFT_476783 [Arabidopsis lyrata subsp.
lyrata]
gi|297333474|gb|EFH63892.1| hypothetical protein ARALYDRAFT_476783 [Arabidopsis lyrata subsp.
lyrata]
Length = 129
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 79/107 (73%), Gaps = 3/107 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHE+ GHI++ E +G+L+RG ++E EDN NC + ++T +DGKV + ++
Sbjct: 4 SLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYKAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK---GKQGNKAGAAGRGKSGILRAQ 105
+IRGS +RF+++PDMLKNAPMFK GK + + GRG+ +RA+
Sbjct: 64 FIRGSLVRFIVIPDMLKNAPMFKDVRGKGKSSSLGVGRGRGAAMRAK 110
>gi|195657699|gb|ACG48317.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|414865766|tpg|DAA44323.1| TPA: small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 68/83 (81%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E G+++RG LVE EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
+IRGS++RF+I+PDMLKNAPMFK
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFK 86
>gi|226505392|ref|NP_001152085.1| LOC100285722 [Zea mays]
gi|194699166|gb|ACF83667.1| unknown [Zea mays]
gi|195652485|gb|ACG45710.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|413935155|gb|AFW69706.1| Small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 68/83 (81%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E G+++RG +VE EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
+IRGS++RF+I+PDMLKNAPMFK
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFK 86
>gi|303273780|ref|XP_003056242.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462326|gb|EEH59618.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 122
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 66/82 (80%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
IGIP+KLLHEAEGH +T E NG+ +RG L+E+EDN NC + +T T RDG+V + + Y
Sbjct: 9 IGIPVKLLHEAEGHTVTIELKNGETYRGTLLESEDNWNCQLEGITQTGRDGRVNQLEHAY 68
Query: 63 IRGSKIRFLILPDMLKNAPMFK 84
IRGSKIRFL++PDMLKNAPMFK
Sbjct: 69 IRGSKIRFLVIPDMLKNAPMFK 90
>gi|320165991|gb|EFW42890.1| small nuclear ribonucleoprotein Sm D3 [Capsaspora owczarzaki ATCC
30864]
Length = 135
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 69/96 (71%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG PIK+LHEA GHI+T E +++RGKL + EDNMNC + D+T T RDG+V +
Sbjct: 1 MSIGTPIKVLHEAVGHIVTIELKTSEVYRGKLFQVEDNMNCQLEDITFTSRDGQVSRLQQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGR 96
+YIRGSK+RF I+PDM++++P+F +A G+
Sbjct: 61 VYIRGSKVRFFIVPDMIRHSPVFAKTSAQRAHLGGK 96
>gi|226507464|ref|NP_001150683.1| LOC100284316 [Zea mays]
gi|194696928|gb|ACF82548.1| unknown [Zea mays]
gi|195619600|gb|ACG31630.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|195641042|gb|ACG39989.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|413956400|gb|AFW89049.1| Small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 68/83 (81%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E G+++RG +VE EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
+IRGS++RF+I+PDMLKNAPMFK
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFK 86
>gi|353236668|emb|CCA68658.1| related to small nuclear ribonucleoprotein sm d3 [Piriformospora
indica DSM 11827]
Length = 129
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 67/83 (80%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++G+P+KLLHEA GH+IT E G L+RGKL EAED++N ++ D+TVT RDG++ + +
Sbjct: 4 TLGVPVKLLHEALGHVITVELKTGQLYRGKLAEAEDSLNISLKDITVTGRDGRISQLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
YIRGS IRF I+PDML+NAPMFK
Sbjct: 64 YIRGSMIRFFIVPDMLQNAPMFK 86
>gi|242041599|ref|XP_002468194.1| hypothetical protein SORBIDRAFT_01g041430 [Sorghum bicolor]
gi|241922048|gb|EER95192.1| hypothetical protein SORBIDRAFT_01g041430 [Sorghum bicolor]
Length = 132
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 68/83 (81%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E G+++RG +VE EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLENITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
+IRGS++RF+I+PDMLKNAPMFK
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFK 86
>gi|115443639|ref|NP_001045599.1| Os02g0102700 [Oryza sativa Japonica Group]
gi|41052905|dbj|BAD07817.1| putative small nuclear ribonucleoprotein polypeptide D3 [Oryza
sativa Japonica Group]
gi|41053239|dbj|BAD08200.1| putative small nuclear ribonucleoprotein polypeptide D3 [Oryza
sativa Japonica Group]
gi|113535130|dbj|BAF07513.1| Os02g0102700 [Oryza sativa Japonica Group]
gi|215692366|dbj|BAG87786.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692586|dbj|BAG88006.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737277|dbj|BAG96206.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189864|gb|EEC72291.1| hypothetical protein OsI_05466 [Oryza sativa Indica Group]
gi|222621997|gb|EEE56129.1| hypothetical protein OsJ_05002 [Oryza sativa Japonica Group]
Length = 132
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 68/83 (81%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E G+++RG +VE EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
+IRGS++RF+I+PDMLKNAPMFK
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFK 86
>gi|115451821|ref|NP_001049511.1| Os03g0240800 [Oryza sativa Japonica Group]
gi|108707095|gb|ABF94890.1| Small nuclear ribonucleoprotein Sm D3, putative, expressed [Oryza
sativa Japonica Group]
gi|113547982|dbj|BAF11425.1| Os03g0240800 [Oryza sativa Japonica Group]
gi|215686515|dbj|BAG87776.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765251|dbj|BAG86948.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768316|dbj|BAH00545.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 132
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 68/83 (81%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E G+++RG +VE EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
+IRGS++RF+I+PDMLKNAPMFK
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFK 86
>gi|359491835|ref|XP_002270532.2| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Vitis
vinifera]
gi|297745546|emb|CBI40711.3| unnamed protein product [Vitis vinifera]
Length = 132
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 68/83 (81%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E +G+L+RG ++E EDN NC + +T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKSGELYRGNMIECEDNWNCQLESITFTGKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
+IRGSK+RF+++PDMLKNAPMFK
Sbjct: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
>gi|125543063|gb|EAY89202.1| hypothetical protein OsI_10698 [Oryza sativa Indica Group]
gi|125585557|gb|EAZ26221.1| hypothetical protein OsJ_10089 [Oryza sativa Japonica Group]
Length = 134
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 68/83 (81%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E G+++RG +VE EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
+IRGS++RF+I+PDMLKNAPMFK
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFK 86
>gi|350293601|gb|EGZ74686.1| Sm-like ribonucleoprotein [Neurospora tetrasperma FGSC 2509]
Length = 236
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 11/96 (11%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEA-----------EDNMNCAMADVTVTF 50
+IGIPIKLL+EA+GHI+T E T+G +RGKL+EA EDNMN + D+TVT
Sbjct: 113 TIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAMLTNALPPKTAEDNMNVQLKDITVTA 172
Query: 51 RDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGK 86
RDG+V + +YIRGS +RF I+PDML+NAPMF+ +
Sbjct: 173 RDGRVSHLEQVYIRGSHVRFFIVPDMLRNAPMFRSR 208
>gi|343427423|emb|CBQ70950.1| related to small nuclear ribonucleoprotein sm d3 [Sporisorium
reilianum SRZ2]
Length = 136
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 78/109 (71%), Gaps = 6/109 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIP+KL+HEA GH+IT E G +RG L +AEDN N AM D+TVT DGK + N+
Sbjct: 3 TIGIPVKLIHEAVGHVITVELKGGAAYRGTLYDAEDNFNIAMKDITVTAPDGKQSHLENV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQ 105
YIRG+ +RF+I+PDML+ APMFK G +G G+A RG++ ILRAQ
Sbjct: 63 YIRGNMLRFIIVPDMLQQAPMFKRIGPNGMKGRGIGSA-RGRATILRAQ 110
>gi|145344044|ref|XP_001416549.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576775|gb|ABO94842.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 95
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 66/82 (80%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+P+KLLHE+EGH++T E G+ +RG+LVE+EDN NC M DVT RDGK M ++Y
Sbjct: 5 VGVPVKLLHESEGHVVTVELKTGETYRGQLVESEDNWNCQMTDVTHVGRDGKESKMEHVY 64
Query: 63 IRGSKIRFLILPDMLKNAPMFK 84
IRGSK+R +++PDMLK+APMFK
Sbjct: 65 IRGSKVRMMVIPDMLKHAPMFK 86
>gi|336473142|gb|EGO61302.1| hypothetical protein NEUTE1DRAFT_107812 [Neurospora tetrasperma
FGSC 2508]
Length = 247
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 11/96 (11%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEA-----------EDNMNCAMADVTVTF 50
+IGIPIKLL+EA+GHI+T E T+G +RGKL+EA EDNMN + D+TVT
Sbjct: 124 TIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAMLTNALPPKTAEDNMNVQLKDITVTA 183
Query: 51 RDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGK 86
RDG+V + +YIRGS +RF I+PDML+NAPMF+ +
Sbjct: 184 RDGRVSHLEQVYIRGSHVRFFIVPDMLRNAPMFRSR 219
>gi|121707652|ref|XP_001271900.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
clavatus NRRL 1]
gi|119400048|gb|EAW10474.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
clavatus NRRL 1]
Length = 136
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 88/134 (65%), Gaps = 26/134 (19%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDML--------------------KNAPMF--KGKQGNKAGAAGRGKS 99
YIRGS ++F I+PDML +NAPMF +G++G G A RGK+
Sbjct: 67 YIRGSHVKFFIVPDMLRGNIVRGRTSDDGCADFSATRNAPMFRSRGQRGRGVGLA-RGKA 125
Query: 100 GILRAQAARGRGRG 113
+ Q ARG+ RG
Sbjct: 126 TV---QRARGQRRG 136
>gi|429329451|gb|AFZ81210.1| LSM domain-containing protein [Babesia equi]
Length = 121
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIGIP+KLL+E GHI+T E N L+RG L EDNMNC + VT+T +DGK +
Sbjct: 1 MSIGIPVKLLYEGIGHIVTAELQNSQLYRGTLTNVEDNMNCLLEGVTLTMKDGKTLALEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGG 120
+Y+RGS+IRF++ PDML++APMF K A R K +L R G P
Sbjct: 61 VYLRGSQIRFMVFPDMLRHAPMF------KQNAKDRSKHAVLPQMRVPVPVRPGIPSHVP 114
Query: 121 RGGWGGP 127
G G P
Sbjct: 115 MGVMGRP 121
>gi|384497172|gb|EIE87663.1| hypothetical protein RO3G_12374 [Rhizopus delemar RA 99-880]
Length = 119
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 85/133 (63%), Gaps = 31/133 (23%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+IG+PIKLLHEA+GHII+ E G L+RGKL+E D+TVT RDG+V +
Sbjct: 1 MTIGVPIKLLHEAQGHIISLELKTGQLYRGKLLE----------DITVTARDGRVSQLDQ 50
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAG---------RGKSGILRAQAARG-- 109
+YIRGS +RF I+PDMLKNAPMFKG AG G RG++ + RAQ ARG
Sbjct: 51 VYIRGSHVRFFIVPDMLKNAPMFKG-----AGPGGLKGRGIGLGRGRATVARAQQARGRG 105
Query: 110 -----RGRGGPPQ 117
RGRGGPP+
Sbjct: 106 MRGTFRGRGGPPR 118
>gi|452985910|gb|EME85666.1| hypothetical protein MYCFIDRAFT_52885 [Pseudocercospora fijiensis
CIRAD86]
Length = 115
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 75/106 (70%), Gaps = 6/106 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA GH +T E +G +RG+L+EAEDNMNC + ++ VT RDG+V + +
Sbjct: 4 TIGIPIKLLNEATGHQVTVEIDSGQTYRGRLIEAEDNMNCQLENINVTQRDGRVTHLDRV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAA 107
YIRGS +R I+PDML+NAPMFK + G GRG G+ R +A
Sbjct: 64 YIRGSHVRLFIVPDMLRNAPMFKSR-----GTRGRG-VGLARGRAT 103
>gi|209881474|ref|XP_002142175.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557781|gb|EEA07826.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 126
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 72/108 (66%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIGIP+K+L+E GHII+ E +GDL+RG L EDNMNC + V VT +DG+ +
Sbjct: 1 MSIGIPVKILYEGLGHIISIEMKSGDLYRGTLAHVEDNMNCMLDTVNVTMKDGRPLALEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAAR 108
Y+RGS+IRF ILPDMLKNAPMFK K A G +G RA A R
Sbjct: 61 CYLRGSQIRFFILPDMLKNAPMFKLAANAKNRARILGVAGNKRAFANR 108
>gi|449302555|gb|EMC98564.1| hypothetical protein BAUCODRAFT_137738 [Baudoinia compniacensis
UAMH 10762]
Length = 116
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 75/102 (73%), Gaps = 3/102 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA GH +T E +G +RGKL+EAEDNMNC + ++ VT RDG+V + +
Sbjct: 4 TIGIPIKLLNEATGHQVTVEIDSGQTYRGKLIEAEDNMNCQLENINVTQRDGRVTHLDRV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAG--RGKSGI 101
YIRGS +R I+PDML+NAPMF+ ++ NK G RG++ +
Sbjct: 64 YIRGSHVRLFIVPDMLRNAPMFR-QRANKGRGVGLARGRATV 104
>gi|262401386|gb|ACY66595.1| small nuclear ribonucleoprotein SM D3 (snRNP core protein D3)
(SM-D3)-like protein [Scylla paramamosain]
Length = 101
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 64/80 (80%)
Query: 28 FRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGKQ 87
+RGKL+EAEDNMN M TVT+R+G+ + N++IRGSKIRFLILPDMLKNAPMFK
Sbjct: 1 YRGKLLEAEDNMNVQMEACTVTYRNGQTARLENVFIRGSKIRFLILPDMLKNAPMFKNMT 60
Query: 88 GNKAGAAGRGKSGILRAQAA 107
G K GAAG GKS ILRAQAA
Sbjct: 61 GRKGGAAGSGKSAILRAQAA 80
>gi|448515433|ref|XP_003867337.1| Smd3 core snRNP protein [Candida orthopsilosis Co 90-125]
gi|380351676|emb|CCG21899.1| Smd3 core snRNP protein [Candida orthopsilosis]
Length = 106
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMA 59
MS GIP++LL+EA+GHIIT E TNGD +RGKL+E EDNMN ++ DVT+T R+G +K M
Sbjct: 1 MSAGIPVRLLNEAQGHIITIELTNGDTYRGKLLENEDNMNSSLFDVTITNGRNGSLKHMD 60
Query: 60 NIYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
++IRGS IRF+ +PD+L++APMF K G+K RG
Sbjct: 61 QVFIRGSMIRFVSVPDILRHAPMFYMKPGDKPKPPIRG 98
>gi|358055777|dbj|GAA98122.1| hypothetical protein E5Q_04805 [Mixia osmundae IAM 14324]
Length = 128
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 76/110 (69%), Gaps = 6/110 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
SIGIP KLLHE+ GH+IT E G +RGKL++AEDN+N +M+ +TVT RDG+V + +
Sbjct: 4 SIGIPCKLLHESVGHVITIELKTGQTYRGKLLDAEDNLNISMSQITVTQRDGRVTQLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-----AGRGKSGILRAQA 106
YIRG I F I+PDML +APMFK +QG A RG++ I RAQ+
Sbjct: 64 YIRGPMINFFIVPDMLAHAPMFK-RQGPNALKGRGIGTARGRATIQRAQS 112
>gi|357113192|ref|XP_003558388.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein
Sm D3-like [Brachypodium distachyon]
Length = 132
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 67/83 (80%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E G+++R ++E EDN NC + +++ T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRXSMLECEDNWNCQLENISFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
+IRGS++RF+I+PDMLKNAPMFK
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFK 86
>gi|45200940|ref|NP_986510.1| AGL157Cp [Ashbya gossypii ATCC 10895]
gi|44985710|gb|AAS54334.1| AGL157Cp [Ashbya gossypii ATCC 10895]
gi|374109756|gb|AEY98661.1| FAGL157Cp [Ashbya gossypii FDAG1]
Length = 102
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 68/87 (78%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
GIP+KLL+EA+GH ++ E T G+ +RGKLV +EDNMNC + DVT T R+G+V M ++++
Sbjct: 5 GIPVKLLNEAQGHTVSLELTTGETYRGKLVGSEDNMNCQLRDVTATARNGQVTHMDHVFV 64
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNK 90
RGS +RF ++PDM KNAP+FK + +K
Sbjct: 65 RGSHVRFFVVPDMFKNAPLFKSESAHK 91
>gi|349804137|gb|AEQ17541.1| putative small nuclear ribonucleoprotein sm d3 [Hymenochirus
curtipes]
Length = 105
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 70/88 (79%), Gaps = 2/88 (2%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNA 80
ET G+++R KL+EAEDNMNC M+++TVT+RDG+V + +Y+RGSKIRFLILPDMLKNA
Sbjct: 1 ETNTGEVYR-KLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYMRGSKIRFLILPDMLKNA 59
Query: 81 PMFKG-KQGNKAGAAGRGKSGILRAQAA 107
PM K K N+ AGRGK+ IL+A+ A
Sbjct: 60 PMLKSMKNKNQGSGAGRGKAAILKARVA 87
>gi|384251125|gb|EIE24603.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 124
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 67/82 (81%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+P+KLLHEAEGH+IT E +G+ +RG+L EAED+ N + VT T +DG+V + +I+
Sbjct: 7 VGVPVKLLHEAEGHVITVELKSGETYRGELAEAEDSWNVQLKQVTATAKDGRVSHLEHIF 66
Query: 63 IRGSKIRFLILPDMLKNAPMFK 84
+RGS++RF+I+PDMLKNAPMFK
Sbjct: 67 VRGSRVRFVIIPDMLKNAPMFK 88
>gi|147822390|emb|CAN59901.1| hypothetical protein VITISV_002889 [Vitis vinifera]
Length = 116
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 77/109 (70%), Gaps = 6/109 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++T E +G+L+RG ++E EDN NC + ++T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-----AGRGKSGILRAQ 105
+IRGSK+ +LI PDMLKNAPMFK G GRG++ +RA+
Sbjct: 64 FIRGSKVPWLI-PDMLKNAPMFKRLDARVKGKGSALGVGRGRAVAMRAR 111
>gi|254567285|ref|XP_002490753.1| Core Sm protein Sm D3 [Komagataella pastoris GS115]
gi|238030549|emb|CAY68473.1| Core Sm protein Sm D3 [Komagataella pastoris GS115]
Length = 100
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M++ IP+KLL+EA+GHII+ E T+G+ +RGKLVE+ED+MN + DVT+T +DGKV M
Sbjct: 1 MALSIPVKLLNEAQGHIISAELTSGESYRGKLVESEDSMNIQLKDVTLTAQDGKVSHMEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
I+IRGS+IRF +P++LKNAP+F + K A RG
Sbjct: 61 IFIRGSQIRFFSVPEILKNAPIFNANE-TKPQAPIRG 96
>gi|300175666|emb|CBK20977.2| unnamed protein product [Blastocystis hominis]
Length = 108
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 68/92 (73%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+ +PIKLLHE EG+ + E TNG+ +RG LV AEDNMNC + +VT+ RDGK+ + N
Sbjct: 1 MASSVPIKLLHEGEGNTVIVELTNGEKYRGHLVRAEDNMNCQLTNVTMRARDGKLSKLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAG 92
+YIRGS++R+++LPD+LK +PMF+ Q K
Sbjct: 61 VYIRGSRVRYVVLPDILKQSPMFQKVQQLKEA 92
>gi|354547206|emb|CCE43940.1| hypothetical protein CPAR2_501650 [Candida parapsilosis]
Length = 106
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 74/98 (75%), Gaps = 1/98 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMA 59
MS GIP++LL+EA+GHIIT E TNGD +RGKL+E EDNMN ++ DVT+T R+G K M
Sbjct: 1 MSAGIPVRLLNEAQGHIITIELTNGDTYRGKLLENEDNMNASLFDVTITNGRNGSSKHMD 60
Query: 60 NIYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
+++RGS IRF+ +PD+L++APMF K G+K RG
Sbjct: 61 QVFVRGSMIRFVSVPDILRHAPMFYMKPGDKPKPPIRG 98
>gi|322706526|gb|EFY98106.1| small nuclear ribonucleoprotein Sm D3 [Metarhizium anisopliae ARSEF
23]
Length = 137
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 27/131 (20%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVE------------------------AED 37
+IGIPIKLL+EA+GHI+T E T+G +RGKL++ AED
Sbjct: 4 TIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLDGTPPLGPLPRNIRTCRVLVLTSRLAED 63
Query: 38 NMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAG 95
NMN + D+TVT RDG+V + +YIRGS +RF I+PDML+NAPMF+ + +G G A
Sbjct: 64 NMNVQLKDITVTARDGRVSHLEQVYIRGSHVRFFIVPDMLRNAPMFRSRNLRGRGVGLA- 122
Query: 96 RGKSGILRAQA 106
RG++ + RA+A
Sbjct: 123 RGRATVSRARA 133
>gi|255718497|ref|XP_002555529.1| KLTH0G11396p [Lachancea thermotolerans]
gi|238936913|emb|CAR25092.1| KLTH0G11396p [Lachancea thermotolerans CBS 6340]
Length = 102
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S GIPIKLL E++GH+++ E T G+ +RGKLV++EDNMN + DVT T RDG V M ++
Sbjct: 3 SNGIPIKLLTESQGHVVSLELTTGEAYRGKLVDSEDNMNVQLRDVTATARDGSVTRMDHV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
++RGS IRF ++PD+LKNAPMFK +K RG
Sbjct: 63 FVRGSHIRFFVVPDILKNAPMFKQGPTSKPPPPIRG 98
>gi|363751767|ref|XP_003646100.1| hypothetical protein Ecym_4216 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889735|gb|AET39283.1| hypothetical protein Ecym_4216 [Eremothecium cymbalariae
DBVPG#7215]
Length = 102
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 68/94 (72%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
GIP+KLL+EA+GH ++ E T G+ +RGKLVE+EDNMNC + DVT T R+G+V M +++I
Sbjct: 5 GIPVKLLNEAQGHTVSLELTTGETYRGKLVESEDNMNCQLRDVTATARNGQVTHMDHVFI 64
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RGS +RF ++PDM KNAP+F K RG
Sbjct: 65 RGSHVRFFVVPDMFKNAPLFNTGPVYKPPPPVRG 98
>gi|452845934|gb|EME47867.1| hypothetical protein DOTSEDRAFT_42182 [Dothistroma septosporum
NZE10]
Length = 115
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 74/106 (69%), Gaps = 6/106 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA GH +T E +G +RGKL+EAEDNMN + ++ VT RDG+V + +
Sbjct: 4 TIGIPIKLLNEATGHQVTVEIDSGQTYRGKLIEAEDNMNVQLENINVTQRDGRVTHLDRV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAA 107
YIRGS +R I+PDML+NAPMF+ + G GRG G+ R +A
Sbjct: 64 YIRGSHVRLFIVPDMLRNAPMFRSR-----GTRGRG-VGLARGRAT 103
>gi|50545379|ref|XP_500227.1| YALI0A19030p [Yarrowia lipolytica]
gi|49646092|emb|CAG84160.1| YALI0A19030p [Yarrowia lipolytica CLIB122]
Length = 105
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 64/81 (79%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
GIP+KLL EA+GH++T E T+G +RGKL+EAEDNMN + DVTVT R G+V + +YI
Sbjct: 5 GIPLKLLSEAQGHVVTVELTSGHTYRGKLIEAEDNMNVQIRDVTVTARGGRVSHLEQVYI 64
Query: 64 RGSKIRFLILPDMLKNAPMFK 84
RGS +RF +P+MLKNAPMF+
Sbjct: 65 RGSHVRFFSIPEMLKNAPMFR 85
>gi|453087211|gb|EMF15252.1| Sm-like ribonucleo protein, partial [Mycosphaerella populorum
SO2202]
Length = 115
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA GH +T E +G +RGKL+EAEDNMN + ++ VT RDG+V + +
Sbjct: 4 TIGIPIKLLNEATGHQVTVEIDSGQTYRGKLIEAEDNMNVQLENINVTQRDGRVTHLDRV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGA-AGRGKSGI 101
YIRGS +R I+PDML+NAPMF+ + G RG++ +
Sbjct: 64 YIRGSHVRLFIVPDMLRNAPMFRSRNARGRGVGLARGRATV 104
>gi|149237821|ref|XP_001524787.1| small nuclear ribonucleoprotein Sm D3 [Lodderomyces elongisporus
NRRL YB-4239]
gi|146451384|gb|EDK45640.1| small nuclear ribonucleoprotein Sm D3 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 106
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 72/90 (80%), Gaps = 1/90 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMA 59
MS GIP++LL+EA+GHI++ E NGD++RGKL+E EDNMN ++ DVT+T ++G VK M
Sbjct: 1 MSAGIPVRLLNEAQGHIVSIEVNNGDVYRGKLLENEDNMNSSLYDVTITNGKNGSVKHME 60
Query: 60 NIYIRGSKIRFLILPDMLKNAPMFKGKQGN 89
++IRGS IRF+ +PD+L+NAPMF K G+
Sbjct: 61 QVFIRGSMIRFISVPDILRNAPMFHMKPGD 90
>gi|50294275|ref|XP_449549.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528863|emb|CAG62525.1| unnamed protein product [Candida glabrata]
Length = 99
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 63/85 (74%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
IP+KLL EA+GH++T E NGD +RGKLVE+EDNMN + DV VT K+ M ++++
Sbjct: 3 NIPVKLLSEAQGHVVTIELNNGDTYRGKLVESEDNMNVQLRDVMVTSSTQKLSRMDHVFV 62
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQG 88
RGS IRF ++PDMLKNAP+FK Q
Sbjct: 63 RGSHIRFFVVPDMLKNAPLFKKNQS 87
>gi|323454301|gb|EGB10171.1| hypothetical protein AURANDRAFT_36815 [Aureococcus anophagefferens]
Length = 113
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 74/99 (74%), Gaps = 6/99 (6%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++G+PIKLLHE EGH++T E NG+++RG L E+E+ MNC + DV VT RDG+V + N+
Sbjct: 7 AVGVPIKLLHEGEGHMVTIELKNGEIYRGHLDESEETMNCLVTDVVVTARDGRVTKLENV 66
Query: 62 YIRGSKIR-----FLILPDMLKNAPMF-KGKQGNKAGAA 94
YIRGS+I+ F+ILPD+LK++P+F K K+ KA A
Sbjct: 67 YIRGSQIKRERRAFMILPDLLKHSPVFEKVKELKKADDA 105
>gi|307109545|gb|EFN57783.1| hypothetical protein CHLNCDRAFT_143127 [Chlorella variabilis]
Length = 126
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 6/114 (5%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+PIKLLHEA GH+ T E +G+++RG++ EAEDN N +++V T RDGKV M +I+
Sbjct: 12 VGVPIKLLHEATGHVCTVELKSGEIYRGEMYEAEDNWNVQLSNVQATGRDGKVTHMEHIF 71
Query: 63 IRGSKIRFLILPDMLKNAPMFK------GKQGNKAGAAGRGKSGILRAQAARGR 110
IRG ++RF+I+PDMLKNAPMFK + G GRG++ RA GR
Sbjct: 72 IRGGRVRFVIVPDMLKNAPMFKRIDPKNKMKSAVLGVGGRGRAVADRANRNVGR 125
>gi|71023653|ref|XP_762056.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
gi|46101621|gb|EAK86854.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
Length = 850
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 56/109 (51%), Positives = 76/109 (69%), Gaps = 6/109 (5%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIP+KL+HEA GH+IT E G +RG L +AEDN N AM D+TVT DGK + N+
Sbjct: 3 TIGIPVKLIHEAVGHVITVELKGGAAYRGTLYDAEDNFNIAMKDITVTAPDGKQSHLENV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQ 105
YIRG+ +RF+I+PDML+ APMFK +G G+A RG++ +LR +
Sbjct: 63 YIRGNMLRFIIVPDMLQQAPMFKRIGPNAMKGRGIGSA-RGRATVLRGE 110
>gi|399215849|emb|CCF72537.1| unnamed protein product [Babesia microti strain RI]
Length = 142
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG P+KLL+E GHIIT E+ NG L+RG L ED MNC M V VT RDGK +
Sbjct: 27 MSIGTPVKLLYEGIGHIITAESCNGLLYRGTLTNVEDTMNCLMEGVVVTMRDGKTMALEQ 86
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNK---AGAAGRGKSGILRAQAARGRGR 112
+Y+RG++IRF++ PDML++APMFK ++ A G + +RA+ RG R
Sbjct: 87 VYLRGAQIRFMVFPDMLRHAPMFKQNPRDRPRLAVLPGMRHAIQMRAKNPRGMKR 141
>gi|406867417|gb|EKD20455.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 115
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 65/80 (81%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 63
Query: 62 YIRGSKIRFLILPDMLKNAP 81
YIRGS +RF I+PDML+ P
Sbjct: 64 YIRGSHVRFFIVPDMLRYGP 83
>gi|147809809|emb|CAN60390.1| hypothetical protein VITISV_006493 [Vitis vinifera]
Length = 133
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 66/83 (79%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++ E +G+L+RG ++E +DN NC + ++T T +DGKV + ++
Sbjct: 5 SLGIPVKLLHEAAGHVVXVELKSGELYRGSMIECKDNWNCQLENITFTVKDGKVSQLEHV 64
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
+IRG K+RF+++PDM KNAPMFK
Sbjct: 65 FIRGIKVRFMVIPDMRKNAPMFK 87
>gi|298714042|emb|CBJ27274.1| Small nuclear ribonucleoprotein-associated protein D3 [Ectocarpus
siliculosus]
Length = 113
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 67/89 (75%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++G+PIKLLHE EGH +T E NG+++RG L EAED MNC M VT+T RDG+V + +
Sbjct: 3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNK 90
Y+RGS I+ ++LPD+LKNAP+FK Q K
Sbjct: 63 YLRGSHIKLVVLPDVLKNAPVFKPVQKMK 91
>gi|367016010|ref|XP_003682504.1| hypothetical protein TDEL_0F04820 [Torulaspora delbrueckii]
gi|359750166|emb|CCE93293.1| hypothetical protein TDEL_0F04820 [Torulaspora delbrueckii]
Length = 100
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 69/94 (73%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
IP+KLL+EA+GHI++ E T G+ +RGKLVE+EDNMN + D TVT D KV M ++++
Sbjct: 3 SIPVKLLNEAQGHIVSLELTTGETYRGKLVESEDNMNVQLRDATVTGADSKVTRMNHVFV 62
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RGS+IRF ++PDML+NAP+FK ++ RG
Sbjct: 63 RGSQIRFFVVPDMLENAPLFKTGPQSRPTPPIRG 96
>gi|366991799|ref|XP_003675665.1| hypothetical protein NCAS_0C03090 [Naumovozyma castellii CBS
4309]
gi|342301530|emb|CCC69299.1| hypothetical protein NCAS_0C03090 [Naumovozyma castellii CBS
4309]
Length = 102
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 68/94 (72%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
IP+KLL+EA+GHI++ E T G+ +RGKL+E+EDNMN + DV VT D K+ M ++++
Sbjct: 5 SIPVKLLNEAQGHIVSIELTTGETYRGKLIESEDNMNVQLRDVVVTQTDSKITRMDHVFV 64
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RGS I+F ++PDMLKNAP+FK ++ RG
Sbjct: 65 RGSHIKFFVVPDMLKNAPLFKTGPQSRPTPPIRG 98
>gi|168003064|ref|XP_001754233.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694787|gb|EDQ81134.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 98
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 64/83 (77%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GI +KLLHEAEGHI+T E +G+ +RG L+E EDN N + VT T DGKV + ++
Sbjct: 4 SLGILVKLLHEAEGHIVTVELKSGEAYRGSLIECEDNWNSQLESVTYTAMDGKVSQLEHV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
IRGSK+RF+I+PD+LKNAPMFK
Sbjct: 64 SIRGSKVRFMIIPDILKNAPMFK 86
>gi|260947028|ref|XP_002617811.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847683|gb|EEQ37147.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 106
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMA 59
MS G+P++LL+EA+GHI++ E T GD +RGKL+E EDNMN ++ DVT+T R G+ M
Sbjct: 1 MSAGVPVRLLNEAQGHIVSLELTTGDTYRGKLIENEDNMNLSLYDVTITKGRTGETSYMN 60
Query: 60 NIYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
+++RGS IRF+ +PD+L+NAPMF K G K RG
Sbjct: 61 QVFVRGSMIRFVSVPDILRNAPMFFMKPGEKPKPPVRG 98
>gi|261193182|ref|XP_002622997.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
SLH14081]
gi|239589132|gb|EEQ71775.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
SLH14081]
Length = 124
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 64/77 (83%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG+V + +
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 62 YIRGSKIRFLILPDMLK 78
YIRGS +RF I+PDML+
Sbjct: 67 YIRGSHVRFFIVPDMLR 83
>gi|118490850|ref|XP_001238734.1| small nuclear ribonucleoprotein (snrnp),putative [Eimeria tenella
strain Houghton]
gi|109238517|emb|CAK51481.1| small nuclear ribonucleoprotein (snrnp),putative [Eimeria
tenella]
Length = 125
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 62/83 (74%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHE GH IT ET G L+RG L AEDNMN + VTVT +DGKV + +
Sbjct: 6 SVGIPVKLLHEGLGHTITVETKTGSLYRGTLENAEDNMNMLIQGVTVTHKDGKVLSLEQV 65
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
YIRGS+++ +I PDML++APMFK
Sbjct: 66 YIRGSQVQMVIFPDMLRHAPMFK 88
>gi|254584500|ref|XP_002497818.1| ZYRO0F14212p [Zygosaccharomyces rouxii]
gi|238940711|emb|CAR28885.1| ZYRO0F14212p [Zygosaccharomyces rouxii]
Length = 100
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 65/81 (80%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
IP+KLL+EA+GH+++ E T G+ +RGKLVE+EDNMN + DVTVT D +V M ++++
Sbjct: 3 NIPVKLLNEAQGHVVSLELTTGETYRGKLVESEDNMNVQLRDVTVTGVDSQVTRMDHVFV 62
Query: 64 RGSKIRFLILPDMLKNAPMFK 84
RGS +RF ++PDML+NAP+FK
Sbjct: 63 RGSHVRFFVVPDMLENAPLFK 83
>gi|156084564|ref|XP_001609765.1| small nuclear ribonucleoprotein (snRNP) [Babesia bovis T2Bo]
gi|154797017|gb|EDO06197.1| small nuclear ribonucleoprotein (snRNP), putative [Babesia bovis]
Length = 110
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 14/121 (11%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG P+KL +E GHI+T E N L+RG LV EDNMNC + VT+ +DGK +
Sbjct: 1 MSIGTPVKLFYEGIGHIVTVEMQNSQLYRGTLVNVEDNMNCLLEGVTMVMKDGKTLALEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGG 120
+++RG++IRF+I PDML++APMF K A R K ++ + PPQ
Sbjct: 61 VFLRGAQIRFVIFPDMLRHAPMF------KQSARDRNKQAVI--------PQAPPPQFAN 106
Query: 121 R 121
R
Sbjct: 107 R 107
>gi|294874372|ref|XP_002766923.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|294881753|ref|XP_002769480.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239868298|gb|EEQ99640.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239872939|gb|EER02198.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
Length = 119
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 62/83 (74%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++GIPIKLLHE+ GH +T E G+L+RG L+ EDNMN +A+V VT RDGK +
Sbjct: 3 AVGIPIKLLHESVGHTVTVEMQTGELYRGHLIHTEDNMNLLIAEVVVTRRDGKQTSLEQA 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
YIRGSKIR++++PD L+ APMFK
Sbjct: 63 YIRGSKIRYIVVPDNLRYAPMFK 85
>gi|71028700|ref|XP_763993.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
gi|68350947|gb|EAN31710.1| small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 118
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 66/91 (72%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG PIKLL+E GH++T E N +L+RG L EDNMNC + V +T +DG+ +
Sbjct: 1 MSIGAPIKLLYEGIGHVVTVELQNSNLYRGTLTNVEDNMNCLLEGVVMTMKDGRTIALEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKA 91
+Y+RG++I+F+I PDML++APMFKG +K+
Sbjct: 61 VYLRGAQIQFMIFPDMLRHAPMFKGNPKDKS 91
>gi|84996607|ref|XP_953025.1| snRNP protein [Theileria annulata strain Ankara]
gi|65304021|emb|CAI76400.1| snRNP protein, putative [Theileria annulata]
Length = 118
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 63/85 (74%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG PIKLL+E GH++T E N +L+RG L EDNMNC M V +T +DG+ +
Sbjct: 1 MSIGAPIKLLYEGIGHVVTVELQNSNLYRGTLTNVEDNMNCLMEGVVMTMKDGRTLALEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG 85
+Y+RG++I+F+I PDML++APMFKG
Sbjct: 61 VYLRGAQIQFMIFPDMLRHAPMFKG 85
>gi|448082089|ref|XP_004195048.1| Piso0_005589 [Millerozyma farinosa CBS 7064]
gi|448086614|ref|XP_004196142.1| Piso0_005589 [Millerozyma farinosa CBS 7064]
gi|359376470|emb|CCE87052.1| Piso0_005589 [Millerozyma farinosa CBS 7064]
gi|359377564|emb|CCE85947.1| Piso0_005589 [Millerozyma farinosa CBS 7064]
Length = 106
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMA 59
MS GIP+KLL+EA+GHII+ E T GD++RGKL+E EDNMN ++ DVT+T + G M
Sbjct: 1 MSAGIPVKLLNEAQGHIISVELTTGDIYRGKLLENEDNMNLSLYDVTITKGKSGSTSYME 60
Query: 60 NIYIRGSKIRFLILPDMLKNAPMFKGKQGN 89
+++RGS IR++++P++LKNAPMF K G+
Sbjct: 61 QVFVRGSMIRYVMVPEILKNAPMFFMKPGD 90
>gi|50422631|ref|XP_459888.1| DEHA2E13420p [Debaryomyces hansenii CBS767]
gi|49655556|emb|CAG88129.1| DEHA2E13420p [Debaryomyces hansenii CBS767]
Length = 106
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMA 59
MS GIP+KLL+EA+GHII+ E T GD +RGKL+E EDNMN ++ DVT+T R G M
Sbjct: 1 MSAGIPVKLLNEAQGHIISLELTTGDTYRGKLLENEDNMNLSLYDVTITKGRTGNTSYMN 60
Query: 60 NIYIRGSKIRFLILPDMLKNAPMFKGKQGN 89
+++RGS IRF+++P++LKNAPMF K G+
Sbjct: 61 QVFVRGSMIRFVMVPEILKNAPMFFMKPGD 90
>gi|255726920|ref|XP_002548386.1| small nuclear ribonucleoprotein Sm D3 [Candida tropicalis
MYA-3404]
gi|240134310|gb|EER33865.1| small nuclear ribonucleoprotein Sm D3 [Candida tropicalis
MYA-3404]
Length = 106
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMA 59
MS GIP++LL+EA+GH+I+ E TNGD +RGKL+E EDNMN ++ + TVT + G V+ M
Sbjct: 1 MSAGIPVRLLNEAQGHVISIELTNGDTYRGKLLENEDNMNLSLYEATVTKGKSGSVEHMD 60
Query: 60 NIYIRGSKIRFLILPDMLKNAPMFKGKQGN 89
++IRGS IRF+ +PD+LKNAPMF K G+
Sbjct: 61 QVFIRGSMIRFVSVPDILKNAPMFFMKPGD 90
>gi|50307679|ref|XP_453819.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642953|emb|CAH00915.1| KLLA0D17160p [Kluyveromyces lactis]
Length = 100
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 68/94 (72%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
IPIKLL+E++GH IT E NGD++RGKLVE EDNMNC + DV T +GK+ M +++I
Sbjct: 3 AIPIKLLNESQGHEITLELNNGDMYRGKLVENEDNMNCQLRDVIFTQANGKMTRMDDVFI 62
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RGS I+ +++PDMLK+AP+FK +K RG
Sbjct: 63 RGSNIKLVVVPDMLKHAPLFKKTAVSKPPPPIRG 96
>gi|241955335|ref|XP_002420388.1| small nuclear ribonucleoprotein, putative; snRNP core protein,
putative [Candida dubliniensis CD36]
gi|223643730|emb|CAX41466.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 106
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMA 59
MS GIP++LL+EA+GHII+ E NGD +RGKL+E EDNMN ++ + T+T + GKV M
Sbjct: 1 MSAGIPVRLLNEAQGHIISIELVNGDTYRGKLLENEDNMNLSLYEATITQGKSGKVSHMD 60
Query: 60 NIYIRGSKIRFLILPDMLKNAPMFKGKQGN 89
++IRGS IRF+ +PD+LKNAPMF K G+
Sbjct: 61 QVFIRGSMIRFISVPDILKNAPMFFMKPGD 90
>gi|118387719|ref|XP_001026962.1| Sm protein [Tetrahymena thermophila]
gi|89308732|gb|EAS06720.1| Sm protein [Tetrahymena thermophila SB210]
Length = 2269
Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats.
Identities = 49/106 (46%), Positives = 73/106 (68%), Gaps = 3/106 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+P+K+L E+E H++T E GD FRG L E+ED MN + +VT+ R+GK + +
Sbjct: 1 MSIGLPVKILRESESHVVTIELKTGDQFRGYLAESEDTMNVRLDNVTMINRNGKQSQLQS 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMF---KGKQGNKAGAAGRGKSGILR 103
+Y+RG++IRF+++PD KNAPMF K + NK +A R K+ +R
Sbjct: 61 VYLRGAQIRFIVIPDFFKNAPMFKRIKAQSKNKNKSAIREKARKIR 106
>gi|294933185|ref|XP_002780640.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239890574|gb|EER12435.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
Length = 120
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 62/83 (74%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++GIPIKLLHE+ GH +T E G+L+RG L+ EDNMN +A+V VT +DGK +
Sbjct: 3 AVGIPIKLLHESVGHTVTVEMQTGELYRGHLIHTEDNMNLLIAEVVVTRKDGKQTSLEQA 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
YIRGSKIR++++PD L+ APMFK
Sbjct: 63 YIRGSKIRYIVVPDNLRYAPMFK 85
>gi|68489557|ref|XP_711397.1| hypothetical protein CaO19.11622 [Candida albicans SC5314]
gi|68489657|ref|XP_711350.1| hypothetical protein CaO19.4146 [Candida albicans SC5314]
gi|46432646|gb|EAK92119.1| hypothetical protein CaO19.4146 [Candida albicans SC5314]
gi|46432696|gb|EAK92167.1| hypothetical protein CaO19.11622 [Candida albicans SC5314]
gi|238882554|gb|EEQ46192.1| small nuclear ribonucleoprotein Sm D3 [Candida albicans WO-1]
Length = 106
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMA 59
MS GIP++LL+EA+GHII+ E NGD +RGKL+E EDNMN ++ + T+T + GKV M
Sbjct: 1 MSAGIPVRLLNEAQGHIISIELINGDTYRGKLLENEDNMNLSLYEATITQGKSGKVSHMD 60
Query: 60 NIYIRGSKIRFLILPDMLKNAPMFKGKQGN 89
++IRGS IRF+ +PD+LKNAPMF K G+
Sbjct: 61 QVFIRGSMIRFISVPDILKNAPMFFMKPGD 90
>gi|156848641|ref|XP_001647202.1| hypothetical protein Kpol_1036p91 [Vanderwaltozyma polyspora DSM
70294]
gi|156117886|gb|EDO19344.1| hypothetical protein Kpol_1036p91 [Vanderwaltozyma polyspora DSM
70294]
Length = 100
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
IP+KLL EA+GH++T E + G+ +RGKLV++EDNMN + DVTVT D KV M ++++
Sbjct: 3 NIPLKLLSEAQGHVVTLELSTGETYRGKLVDSEDNMNVQLQDVTVTGVDSKVSRMDHVFV 62
Query: 64 RGSKIRFLILPDMLKNAPMF-KGKQG 88
RGS I+F ++PD+LKNAP+F KG Q
Sbjct: 63 RGSHIKFFVVPDLLKNAPLFNKGPQS 88
>gi|8778615|gb|AAF79623.1|AC027665_24 F5M15.9 [Arabidopsis thaliana]
Length = 207
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 81/145 (55%), Gaps = 36/145 (24%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GHI+T E +G+L+RG ++E EDN NC + D+T T +DGKV + ++
Sbjct: 4 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHV 63
Query: 62 YIRGSKI-------------------------------RFLILPDMLKNAPMFKGKQGNK 90
+IRGSK+ RF+++PD+LK+APMFK +
Sbjct: 64 FIRGSKVRCCTCFLVYVIHGIILVNPSCLVIDLRIYLDRFMVIPDILKHAPMFK-----R 118
Query: 91 AGAAGRGKSGILRAQAARGRGRGGP 115
A +GKS L RG RG P
Sbjct: 119 LDARIKGKSSSLGVGRGRGAMRGKP 143
>gi|412990430|emb|CCO19748.1| Small nuclear ribonucleoprotein Sm D3 [Bathycoccus prasinos]
Length = 131
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 67/106 (63%), Gaps = 24/106 (22%)
Query: 3 IGIPIKLLHEAEGHIITC------------------------ETTNGDLFRGKLVEAEDN 38
+GIP+KL+HE+EGH+IT E +G+L+RG LVEAEDN
Sbjct: 10 VGIPVKLMHESEGHVITVPSLHSFLSFSLSLTKTFLSCAQQVELKSGELYRGTLVEAEDN 69
Query: 39 MNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFK 84
NC + +V+ T RDGK + N Y+RGSKIR +I+PDMLKNAPMFK
Sbjct: 70 WNCQLTNVSHTARDGKHSSLENCYLRGSKIRMVIVPDMLKNAPMFK 115
>gi|328771488|gb|EGF81528.1| hypothetical protein BATDEDRAFT_7518, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 77
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 61/77 (79%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSK 67
+LLHEA GHI+T E G ++RGKL+ AEDNMN + D+T T R+G+V + ++IRGS+
Sbjct: 1 QLLHEAMGHIVTIELKTGSVYRGKLLNAEDNMNVQLRDITHTARNGRVSQLTQVFIRGSQ 60
Query: 68 IRFLILPDMLKNAPMFK 84
IRF+I+PDMLKNAPMFK
Sbjct: 61 IRFVIVPDMLKNAPMFK 77
>gi|401411081|ref|XP_003884988.1| hypothetical protein NCLIV_053870 [Neospora caninum Liverpool]
gi|325119407|emb|CBZ54960.1| hypothetical protein NCLIV_053870 [Neospora caninum Liverpool]
Length = 132
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 73/105 (69%), Gaps = 4/105 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++G P+KLL+E GH +T E +G+++RG L AEDNMNC + VTVT RDG+V + +
Sbjct: 3 TVGTPVKLLYEGLGHTVTVEIKSGEVYRGVLENAEDNMNCLLQTVTVTHRDGRVVSLEQV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGR--GKSGILRA 104
YIRGS+++F++ PDML++AP F + +KAG R G G+ RA
Sbjct: 63 YIRGSQVKFIVFPDMLRHAPFF--RMMDKAGKYKRALGLVGMRRA 105
>gi|237829847|ref|XP_002364221.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|211961885|gb|EEA97080.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221487294|gb|EEE25526.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii GT1]
gi|221507086|gb|EEE32690.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii VEG]
Length = 131
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++G P+KLL+E GH +T E +G+++RG L AEDNMNC + VTVT RDG+V + +
Sbjct: 3 TVGTPVKLLYEGLGHTVTVEIKSGEVYRGVLENAEDNMNCLLQTVTVTHRDGRVVSLEQV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
YIRGS+++F++ PDML++AP F + +KAG R
Sbjct: 63 YIRGSQVKFIVFPDMLRHAPFF--RMVDKAGKYKRA 96
>gi|126133653|ref|XP_001383351.1| hypothetical protein PICST_13887 [Scheffersomyces stipitis CBS
6054]
gi|126095500|gb|ABN65322.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 97
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMANIY 62
GIP++LL+EA+GH+I+ E T GD +RGKL+E EDNMN ++ DV +T R G M ++
Sbjct: 2 GIPVRLLNEAQGHVISLELTTGDTYRGKLLENEDNMNLSLYDVVITKGRTGATSYMNQVF 61
Query: 63 IRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
+RGS IRF+ +PD+LKNAPMF K G+K RG
Sbjct: 62 VRGSMIRFITVPDILKNAPMFFMKPGDKPKPPVRG 96
>gi|301108107|ref|XP_002903135.1| small nuclear ribonucleoprotein Sm D3 [Phytophthora infestans
T30-4]
gi|262097507|gb|EEY55559.1| small nuclear ribonucleoprotein Sm D3 [Phytophthora infestans
T30-4]
Length = 113
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 64/87 (73%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++G+PI LLHE EG +T E NG+++RG L E+ED+MNC ++DV +T RDG+ + +
Sbjct: 4 TVGVPISLLHEGEGRTVTIELKNGEVYRGHLTESEDSMNCQLSDVVLTQRDGQKSKLELV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQG 88
Y+RGS+I+ +ILPD+LKN+P+ Q
Sbjct: 64 YVRGSQIKLVILPDILKNSPLLSKVQA 90
>gi|401840421|gb|EJT43250.1| SMD3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 99
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 64/81 (79%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
G+P+KLL+EA+GH++T E T G +RGKLVE+ED+MN + DVT T G V M I++
Sbjct: 3 GVPVKLLNEAQGHVVTLELTTGATYRGKLVESEDSMNVQLRDVTATEPHGAVTHMDQIFV 62
Query: 64 RGSKIRFLILPDMLKNAPMFK 84
RGS+I+F+++PD+LKNAP+FK
Sbjct: 63 RGSQIKFIVVPDLLKNAPLFK 83
>gi|296005187|ref|XP_002808925.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
gi|225631811|emb|CAX64206.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
Length = 116
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+GIPIKLLHE GH I+ ET +G L+RG L+ AEDNMNC + +V+V +DGK +
Sbjct: 1 MSVGIPIKLLHEGIGHTISVETKSGILYRGTLLFAEDNMNCLLENVSVVKKDGKQILLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGR 110
+YIRG + F+I PDML+ AP+FK + A + I RA A R
Sbjct: 61 VYIRGGSVSFMIFPDMLRYAPIFKINKSK----AKTNFTTIRRAMEAHAR 106
>gi|403224047|dbj|BAM42177.1| snRNP protein [Theileria orientalis strain Shintoku]
Length = 119
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 64/91 (70%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG P+KLL+E GHI+T E N +L+RG L EDNMNC + VT+T +DG+ +
Sbjct: 1 MSIGAPVKLLYEGIGHIVTIELQNSNLYRGTLTNVEDNMNCLLEGVTMTTKDGRTLALEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKA 91
+Y+RG++I F+I PDML++APMFK ++
Sbjct: 61 VYLRGAQILFMIFPDMLRHAPMFKANPKDRT 91
>gi|410082351|ref|XP_003958754.1| hypothetical protein KAFR_0H02100 [Kazachstania africana CBS
2517]
gi|372465343|emb|CCF59619.1| hypothetical protein KAFR_0H02100 [Kazachstania africana CBS
2517]
Length = 102
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVT-FRDGKVKPMA 59
MS IPIKLL+E++GHII+ E NGD +RGKL+ EDNMN + D VT + K M
Sbjct: 1 MSSNIPIKLLNESQGHIISLELNNGDTYRGKLLTNEDNMNLQLRDTIVTNAQTNKQTKMD 60
Query: 60 NIYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
+++IRGS+I+FL LPDMLKNAP+FK + +K RG
Sbjct: 61 HVFIRGSQIKFLSLPDMLKNAPLFKTGKASKQPPPIRG 98
>gi|773428|gb|AAA65451.1| small nuclear ribonucleoprotein, partial [Caenorhabditis elegans]
Length = 71
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 57/70 (81%)
Query: 15 GHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILP 74
H++T ET G+++RGKL EAEDNMNC +A+ VTFRDG+ + N++IRG+KIRF+ILP
Sbjct: 2 SHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILP 61
Query: 75 DMLKNAPMFK 84
DMLKNAP FK
Sbjct: 62 DMLKNAPXFK 71
>gi|219110787|ref|XP_002177145.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411680|gb|EEC51608.1| predicted protein, partial [Phaeodactylum tricornutum CCAP
1055/1]
Length = 87
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 65/83 (78%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++G+PIKLL EAEG IT E NG+++RG LV AED MN +++DV T R+GK+ M N+
Sbjct: 3 TVGVPIKLLFEAEGMKITVEMKNGEIYRGLLVGAEDTMNVSLSDVLRTARNGKITKMPNV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
Y+RGS IRF+ LPD+LK+AP+F+
Sbjct: 63 YLRGSSIRFIALPDLLKSAPIFQ 85
>gi|344301770|gb|EGW32075.1| hypothetical protein SPAPADRAFT_138952 [Spathaspora passalidarum
NRRL Y-27907]
Length = 103
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 71/99 (71%), Gaps = 2/99 (2%)
Query: 1 MSI-GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPM 58
MS+ GIP++LL+EA+GH+I+ E T GD +RGKL+E EDNMN ++ DV +T + G M
Sbjct: 1 MSVAGIPVRLLNEAQGHVISVELTTGDTYRGKLLENEDNMNLSLYDVVITKGKTGDTTYM 60
Query: 59 ANIYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
+++RGS IRF+ +PD+LKNAPMF K G+K RG
Sbjct: 61 NQVFVRGSMIRFISVPDILKNAPMFFMKPGDKPKPPIRG 99
>gi|387220181|gb|AFJ69799.1| small nuclear ribonucleoprotein D3, partial [Nannochloropsis
gaditana CCMP526]
Length = 133
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 73/112 (65%), Gaps = 8/112 (7%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+GIPI LLH+AEG IIT ET G+L+RG L EAEDNMN + DVT T GK + IY
Sbjct: 9 VGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIY 68
Query: 63 IRGSKIRFLILPDMLKNAPMF------KGKQGN--KAGAAGRGKSGILRAQA 106
I+GS++ F+ILPDMLK APMF K GN + GA RG++ ++ +
Sbjct: 69 IKGSQVNFMILPDMLKKAPMFKRIKVWKKYHGNVPELGAGVRGQAAVISQKT 120
>gi|389582938|dbj|GAB65674.1| small nuclear ribonucleoprotein [Plasmodium cynomolgi strain B]
Length = 116
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 61/84 (72%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+GIPIKLLHE GH I+ ET G L+RG L+ AEDNMNC + +V+V +DGK +
Sbjct: 1 MSVGIPIKLLHEGIGHTISVETKAGVLYRGTLLFAEDNMNCLLENVSVVKKDGKQILLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFK 84
+YIRG + F+I PDML+ AP+FK
Sbjct: 61 VYIRGGSVSFMIFPDMLRYAPIFK 84
>gi|156097204|ref|XP_001614635.1| small nuclear ribonucleoprotein (snRNP) [Plasmodium vivax Sal-1]
gi|148803509|gb|EDL44908.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
vivax]
Length = 116
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 61/84 (72%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+GIPIKLLHE GH I+ ET G L+RG L+ AEDNMNC + +V+V +DGK +
Sbjct: 1 MSVGIPIKLLHEGIGHTISVETKAGVLYRGTLLFAEDNMNCLLENVSVVKKDGKQILLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFK 84
+YIRG + F+I PDML+ AP+FK
Sbjct: 61 VYIRGGSVSFMIFPDMLRYAPIFK 84
>gi|6323176|ref|NP_013248.1| Smd3p [Saccharomyces cerevisiae S288c]
gi|1173457|sp|P43321.1|SMD3_YEAST RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|807056|gb|AAB32821.1| Smd3 protein, snRNP protein Smd3=D core small nuclear
ribonucleoprotein [Saccharomyces cerevisiae, BJ3434,
Peptide, 101 aa]
gi|1262307|gb|AAB82381.1| Smd3p: Small nuclear ribonucleoprotein D3 homolog [Saccharomyces
cerevisiae]
gi|1360574|emb|CAA97719.1| SMD3 [Saccharomyces cerevisiae]
gi|151941309|gb|EDN59687.1| Sm D3 [Saccharomyces cerevisiae YJM789]
gi|190406176|gb|EDV09443.1| small nuclear ribonucleoprotein Sm D3 [Saccharomyces cerevisiae
RM11-1a]
gi|256273010|gb|EEU07972.1| Smd3p [Saccharomyces cerevisiae JAY291]
gi|259148134|emb|CAY81383.1| Smd3p [Saccharomyces cerevisiae EC1118]
gi|285813562|tpg|DAA09458.1| TPA: Smd3p [Saccharomyces cerevisiae S288c]
gi|323303905|gb|EGA57686.1| Smd3p [Saccharomyces cerevisiae FostersB]
gi|323308144|gb|EGA61397.1| Smd3p [Saccharomyces cerevisiae FostersO]
gi|323332570|gb|EGA73978.1| Smd3p [Saccharomyces cerevisiae AWRI796]
gi|323336667|gb|EGA77933.1| Smd3p [Saccharomyces cerevisiae Vin13]
gi|323353994|gb|EGA85847.1| Smd3p [Saccharomyces cerevisiae VL3]
gi|349579868|dbj|GAA25029.1| K7_Smd3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764414|gb|EHN05938.1| Smd3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
gi|392297664|gb|EIW08763.1| Smd3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 101
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 63/81 (77%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
GIP+KLL+EA+GHI++ E T G +RGKLVE+ED+MN + DV T G V M I++
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFV 64
Query: 64 RGSKIRFLILPDMLKNAPMFK 84
RGS+I+F+++PD+LKNAP+FK
Sbjct: 65 RGSQIKFIVVPDLLKNAPLFK 85
>gi|45270956|gb|AAS56859.1| YLR147C [Saccharomyces cerevisiae]
Length = 101
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 63/81 (77%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
GIP+KLL+EA+GHI++ E T G +RGKLVE+ED+MN + DV T G V M I++
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFV 64
Query: 64 RGSKIRFLILPDMLKNAPMFK 84
RGS+I+F+++PD+LKNAP+FK
Sbjct: 65 RGSQIKFIVVPDLLKNAPLFK 85
>gi|403213468|emb|CCK67970.1| hypothetical protein KNAG_0A02810 [Kazachstania naganishii CBS
8797]
Length = 100
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+ IPIKLL EA+GHI+ E G+ +RG+L+ +EDNMN + DVTVT DG M +++
Sbjct: 1 MSIPIKLLQEAQGHIVDLELHTGETYRGRLIGSEDNMNVQLGDVTVTKVDGSRTTMEHVF 60
Query: 63 IRGSKIRFLILPDMLKNAPMFKGKQGNKAGA 93
+RGS++RF LPDML+NAP+FK K N++ A
Sbjct: 61 VRGSQVRFFTLPDMLRNAPLFK-KAENQSRA 90
>gi|221054464|ref|XP_002258371.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193808440|emb|CAQ39143.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
Length = 116
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 61/84 (72%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+GIPIKLLHE GH I+ ET G L+RG L+ AEDNMNC + +V+V +DGK +
Sbjct: 1 MSVGIPIKLLHEGIGHTISVETKAGVLYRGTLLFAEDNMNCLLENVSVIKKDGKQILLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFK 84
+YIRG + F+I PDML+ AP+FK
Sbjct: 61 VYIRGGSVSFMIFPDMLRYAPIFK 84
>gi|444314147|ref|XP_004177731.1| hypothetical protein TBLA_0A04160 [Tetrapisispora blattae CBS
6284]
gi|387510770|emb|CCH58212.1| hypothetical protein TBLA_0A04160 [Tetrapisispora blattae CBS
6284]
Length = 100
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 63/94 (67%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
+PIKLL EA+GHI++ E NG+ ++G+LVE+EDNMN + DV VT D K M +++
Sbjct: 3 SVPIKLLSEAQGHIVSLELINGETYKGRLVESEDNMNVQLQDVLVTGTDSKQSRMDQVFV 62
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RGS IRF +LP ML+ AP+FK +K RG
Sbjct: 63 RGSHIRFFVLPSMLQKAPLFKTGPQSKQLPPVRG 96
>gi|158263375|gb|ABW24416.1| small nuclear ribonucleoprotein [Riftia pachyptila]
Length = 104
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 29 RGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGKQG 88
RGKL+EAEDNMNC M+D+T T+RDG+ + N+++RGSKIRFLILPDMLKNAPMFK QG
Sbjct: 1 RGKLLEAEDNMNCQMSDITCTYRDGRTAQLENVFVRGSKIRFLILPDMLKNAPMFKKVQG 60
Query: 89 NKAGAAGRGKSGILRAQ 105
GA GKS ILRAQ
Sbjct: 61 KGGGAGR-GKSAILRAQ 76
>gi|410956322|ref|XP_003984791.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Felis catus]
Length = 131
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 71/115 (61%), Gaps = 8/115 (6%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS + IK+LHEA GHI+TCET ++ GKL EDN+NC M+++ V +R+G V +
Sbjct: 1 MSYSVLIKVLHEAAGHIMTCETNTDKMYHGKLGGREDNINCRMSNIAVPYREGPVAQLEQ 60
Query: 61 IYIRG-------SKIRFLILPDMLKNAPMFKGKQGNKAGA-AGRGKSGILRAQAA 107
+YIR KI FL PDML N PM K + G+ +GRGK+ +L+AQ A
Sbjct: 61 VYIRDINICFKKKKICFLTSPDMLTNVPMLKSMKNKHQGSGSGRGKAAMLKAQVA 115
>gi|407038001|gb|EKE38889.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 111
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 65/94 (69%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+IG P+K+ HE++G I+T E G+ +RG++VE EDNMNC + DVT+T +DG
Sbjct: 1 MNIGAPLKIFHESKGTIVTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQSRTEY 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAA 94
I+IRG+++RF++LP+M KN+P K + K A
Sbjct: 61 IFIRGNQVRFVVLPEMFKNSPCLKSSELKKHVQA 94
>gi|67476256|ref|XP_653731.1| small nuclear ribonucleoprotein [Entamoeba histolytica HM-1:IMSS]
gi|56470719|gb|EAL48353.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449709025|gb|EMD48372.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
KU27]
Length = 111
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 64/90 (71%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+IG P+K+ HE++G I+T E G+ +RG++VE EDNMNC + DVT+T +DG
Sbjct: 1 MNIGAPLKIFHESKGTIVTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQSRTEY 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNK 90
I+IRG+++RF++LP+M KN+P K + K
Sbjct: 61 IFIRGNQVRFVVLPEMFKNSPCLKSSELKK 90
>gi|167378504|ref|XP_001734822.1| small nuclear ribonucleoprotein Sm D3 [Entamoeba dispar SAW760]
gi|165903473|gb|EDR29003.1| small nuclear ribonucleoprotein Sm D3, putative [Entamoeba dispar
SAW760]
Length = 111
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 64/90 (71%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+IG P+K+ HE++G I+T E G+ +RG++VE EDNMNC + DVT+T +DG
Sbjct: 1 MNIGAPLKIFHESKGTIVTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQSRTEY 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNK 90
I+IRG+++RF++LP+M KN+P K + K
Sbjct: 61 IFIRGNQVRFVVLPEMFKNSPCLKSSELKK 90
>gi|366999829|ref|XP_003684650.1| hypothetical protein TPHA_0C00590 [Tetrapisispora phaffii CBS
4417]
gi|357522947|emb|CCE62216.1| hypothetical protein TPHA_0C00590 [Tetrapisispora phaffii CBS
4417]
Length = 100
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 63/81 (77%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
IPIKLL EA+GH+++ E + G+ +RGKLV++EDNMN + DVT T + +V M +++I
Sbjct: 3 NIPIKLLSEAQGHVVSLELSTGETYRGKLVDSEDNMNVQLRDVTHTGVNSEVTRMDDVFI 62
Query: 64 RGSKIRFLILPDMLKNAPMFK 84
RGS+IRF LPDMLK+AP+FK
Sbjct: 63 RGSQIRFFALPDMLKHAPLFK 83
>gi|145495655|ref|XP_001433820.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145545630|ref|XP_001458499.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400940|emb|CAK66423.1| unnamed protein product [Paramecium tetraurelia]
gi|124426319|emb|CAK91102.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 63/89 (70%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+G+P+K++HEA HI+T E G++F G + EAED MN + +V + RDG+ +
Sbjct: 1 MSLGVPLKIMHEAAHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGN 89
+Y+RGS+IRF+++PD+ K APMFK + N
Sbjct: 61 VYLRGSQIRFVVIPDVFKYAPMFKKIRAN 89
>gi|406607031|emb|CCH41546.1| Small nuclear ribonucleoprotein Sm D3 [Wickerhamomyces ciferrii]
Length = 95
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 64/83 (77%), Gaps = 5/83 (6%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS GIP+KLL+EA+GHI++ E +G+ +R AEDNMN + D+T+T RDGKV + +
Sbjct: 1 MSAGIPVKLLNEAQGHIVSLELNSGETYR-----AEDNMNVQLNDITLTSRDGKVTHLDH 55
Query: 61 IYIRGSKIRFLILPDMLKNAPMF 83
++IRGS IRF ++PDML+NAPMF
Sbjct: 56 VFIRGSNIRFFVVPDMLRNAPMF 78
>gi|145493031|ref|XP_001432512.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399624|emb|CAK65115.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 63/89 (70%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+G+P+K++HEA HI+T E G++F G + EAED MN + +V + RDG+ +
Sbjct: 1 MSLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGN 89
+Y+RGS+IRF+++PD+ K APMFK + N
Sbjct: 61 VYLRGSQIRFVVIPDVFKYAPMFKKIRAN 89
>gi|145510771|ref|XP_001441315.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408561|emb|CAK73918.1| unnamed protein product [Paramecium tetraurelia]
Length = 363
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+G+P+K++HEA HI+T E G++F G + EAED MN + +V + RDG+ +
Sbjct: 1 MSLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGG 120
+Y+RGS+IRF+++PD+ K APMFK + N A + I R +A + RG
Sbjct: 61 VYLRGSQIRFVVIPDVFKYAPMFKKIRAN---AKSKNMQQI-REKARQVRGMEFTSFVNN 116
Query: 121 RG 122
RG
Sbjct: 117 RG 118
>gi|344229960|gb|EGV61845.1| hypothetical protein CANTEDRAFT_107251 [Candida tenuis ATCC
10573]
Length = 108
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMANI 61
I IP++LL EA+GHI+T E GD +RGKL+E EDNMN ++ DV +T R G M+ +
Sbjct: 4 IDIPVRLLTEAQGHIVTVELVTGDTYRGKLLENEDNMNLSLYDVVITKGRSGTTSHMSQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGN 89
++RGS IR +I+P+MLKNAPMF K +
Sbjct: 64 FVRGSMIRLVIVPEMLKNAPMFFMKPSD 91
>gi|146415963|ref|XP_001483951.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
gi|146391076|gb|EDK39234.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 106
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 66/90 (73%), Gaps = 1/90 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMA 59
MS GIP+KLL+EA+GH+++ E GD +RGKL+E EDNMN ++ DV VT R G M
Sbjct: 1 MSAGIPVKLLNEAQGHVVSLELVTGDTYRGKLLENEDNMNLSLYDVVVTKGRTGATTHMN 60
Query: 60 NIYIRGSKIRFLILPDMLKNAPMFKGKQGN 89
+++RGS IR++ +P++L+NAPMF K G+
Sbjct: 61 QVFVRGSMIRYISVPEILRNAPMFFMKPGD 90
>gi|149043763|gb|EDL97214.1| rCG60635, isoform CRA_a [Rattus norvegicus]
Length = 84
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 53/58 (91%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPM 58
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQL 58
>gi|397638104|gb|EJK72932.1| hypothetical protein THAOC_05490 [Thalassiosira oceanica]
Length = 112
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 65/90 (72%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EAEG +T E +G+++RG L+ AED MN +++V T R+G+V + +
Sbjct: 3 NIGIPIKLLYEAEGMKVTVEMKSGEIYRGLLLNAEDTMNMTLSEVVRTGRNGQVTKHSTV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKA 91
Y+RGS IRF+ LPD+L+NAP FK KA
Sbjct: 63 YLRGSGIRFIALPDLLRNAPAFKKVASMKA 92
>gi|148699965|gb|EDL31912.1| small nuclear ribonucleoprotein D3, isoform CRA_a [Mus musculus]
Length = 84
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 53/58 (91%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPM 58
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQL 58
>gi|325192510|emb|CCA26944.1| small nuclear ribonucleoprotein Sm D3 putative [Albugo laibachii
Nc14]
Length = 112
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 65/83 (78%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++ +PI LLHE EG IT E NG+++RG L E+ED+MNC +++V ++ R+G+ + +
Sbjct: 4 TMAVPIALLHEGEGRNITVELKNGEIYRGHLEESEDSMNCQLSNVVLSARNGQKCKLEQV 63
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
Y+RGS+I+F+ILP++LKN+P+F+
Sbjct: 64 YVRGSQIKFIILPELLKNSPLFE 86
>gi|68076469|ref|XP_680154.1| small nuclear ribonucleoprotein (snRNP) [Plasmodium berghei strain
ANKA]
gi|56501047|emb|CAH95430.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
berghei]
Length = 126
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 70/120 (58%), Gaps = 14/120 (11%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLV----------EAEDNMNCAMADVTVTF 50
MS+G PIKL+HE GH I+ ET +G L+RG LV AEDNMNC +A+VTV
Sbjct: 1 MSVGTPIKLIHEGIGHTISVETKSGILYRGILVCSVATRTIYLFAEDNMNCLLANVTVVK 60
Query: 51 RDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGR 110
+DGK + +YIRG + F+I PDML+ AP+FK + A + I RA A R
Sbjct: 61 QDGKQVLLEQVYIRGGSVSFMIFPDMLRYAPIFKVNKSK----AKTNFATIRRAMEAHAR 116
>gi|323447696|gb|EGB03608.1| hypothetical protein AURANDRAFT_8431 [Aureococcus anophagefferens]
Length = 118
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 68/112 (60%), Gaps = 11/112 (9%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+P+ L+H+ EG I+T E NGD +RG L E EDNMNC + D T T G + +I+
Sbjct: 3 VGVPLILMHDGEGTIVTIECKNGDTYRGFLDETEDNMNCVLKDATRTDAKGNKSQVEHIF 62
Query: 63 IRGSKIRFLILPDMLKNAPMF-------KGKQGNKAGAAGRGKSGILRAQAA 107
+RGS+I F I P+MLK APMF K K KAGA SG +R QAA
Sbjct: 63 LRGSQIAFFIFPNMLKKAPMFNRVRAWRKTKATKKAGAP----SGTVRGQAA 110
>gi|443917507|gb|ELU38208.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 132
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 20/134 (14%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IG+P+KLLHEA GHIIT E +G L+ ED++N ++ D+TVT RDGKV + +
Sbjct: 4 TIGVPVKLLHEALGHIITVELKSGALY------PEDSLNISLKDITVTGRDGKVSQLDQV 57
Query: 62 YIRGSKIRFLILPDMLKNAPMF------KGKQGNKAGAAGRGKSGIL--------RAQAA 107
YIRGS +RF I+PDML+NAP++ KG + + + + ++
Sbjct: 58 YIRGSMVRFFIVPDMLQNAPIWPECHEGKGYRNSSWSCYHHARPLPMHLSYMSHSHVPSS 117
Query: 108 RGRGRGGPPQRGGR 121
RGRG P RG R
Sbjct: 118 ARRGRGIPQSRGIR 131
>gi|70952429|ref|XP_745383.1| small nuclear ribonucleoprotein (snRNP) [Plasmodium chabaudi
chabaudi]
gi|56525689|emb|CAH74732.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
chabaudi chabaudi]
Length = 129
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 17/123 (13%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLV-------------EAEDNMNCAMADVT 47
MS+G PIKL+HE GH I+ ET +G L+RG LV AEDNMNC +++VT
Sbjct: 1 MSVGTPIKLIHEGIGHTISVETKSGILYRGTLVCSFMLILYFLKDLFAEDNMNCLLSNVT 60
Query: 48 VTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAA 107
V +DGK + +YIRG + F+I PDML+ AP+FK + A + I RA A
Sbjct: 61 VVKQDGKQVLLEQVYIRGGSVSFMIFPDMLRYAPIFKINKSK----AKTNFATIRRAMEA 116
Query: 108 RGR 110
R
Sbjct: 117 HAR 119
>gi|157133873|ref|XP_001663050.1| hypothetical protein AaeL_AAEL012919 [Aedes aegypti]
gi|108870656|gb|EAT34881.1| AAEL012919-PA [Aedes aegypti]
Length = 96
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 39 MNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGK 98
MNC M +TVT+RDG+ + N+YIRGSK+RF+ LPDMLKNAPMFK KQG KAG A RGK
Sbjct: 1 MNCQMTQLTVTYRDGRTSNLENVYIRGSKVRFMNLPDMLKNAPMFK-KQGAKAGTACRGK 59
Query: 99 SGILRA 104
S ILRA
Sbjct: 60 SAILRA 65
>gi|430811877|emb|CCJ30671.1| unnamed protein product [Pneumocystis jirovecii]
Length = 114
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKV-KPMAN 60
SIGIP+KLLHEA GHI+TCE +NG +RGKL+EAEDNMN + D+TVT RDG+V +
Sbjct: 3 SIGIPLKLLHEATGHIVTCELSNGSTYRGKLLEAEDNMNIQLKDITVTARDGRVFTSRSG 62
Query: 61 IYIR-GSKIRFLILPDMLKNAPMFKGK 86
IY + + +NAPMF+ +
Sbjct: 63 IYSWIACSLLYCTRHVKYRNAPMFRSR 89
>gi|298709378|emb|CBJ31311.1| Small nuclear ribonucleoprotein-associated protein D3 [Ectocarpus
siliculosus]
Length = 177
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 70/107 (65%), Gaps = 5/107 (4%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIR 64
+PI LLH+AEG IIT E NG++ RG L EAED+MN + D T GK + +YIR
Sbjct: 1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIR 60
Query: 65 GSKIRFLILPDMLKNAPMF-KGKQGNKAGAAGRGKSGILRAQAARGR 110
G++I F I+P+ML+NAPMF + KQG K +G +L ++ A+G+
Sbjct: 61 GNQIVFCIVPNMLRNAPMFARIKQGRKY----KGHPPVLASEGAKGQ 103
>gi|401825715|ref|XP_003886952.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
gi|392998109|gb|AFM97971.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
Length = 87
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M++ +P+KLLHEA+G ++T ET NGD++RG++ E +D MN + +VTVT P
Sbjct: 1 MAVTVPLKLLHEAQGFVVTVETNNGDMYRGRMKEVDDYMNVVLDEVTVT-SHSSCMPKKE 59
Query: 61 IYIRGSKIRFLILPDMLKNAPMF 83
I IRGS IRF +LP LK AP F
Sbjct: 60 IVIRGSSIRFFVLPPALKFAPFF 82
>gi|401887212|gb|EJT51213.1| pre-mRNA splicing factor [Trichosporon asahii var. asahii CBS
2479]
Length = 200
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 53/65 (81%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++G+P+KLLHE+ GHI+T E G+++RGKL+EAED++N A+ D+TVT RDG+V + +
Sbjct: 3 NLGVPVKLLHESLGHIVTVELKTGEMYRGKLMEAEDSLNMALKDITVTARDGRVSQLEQV 62
Query: 62 YIRGS 66
YIRGS
Sbjct: 63 YIRGS 67
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 9/71 (12%)
Query: 56 KPMANIYIRGSKIRFLILPDMLKNAPMFK-----GKQGNKAGAAGRGKSGILRAQAARGR 110
+ A+++ ++RF+I+PD+L +APMFK +G GAA RG++ I RA + RG
Sbjct: 133 RSYASVFTADIQVRFIIVPDLLAHAPMFKRVGPNAMRGRGIGAA-RGRATIQRAISRRG- 190
Query: 111 GRGGPPQRGGR 121
G P +G R
Sbjct: 191 --GQPRSQGVR 199
>gi|396081074|gb|AFN82693.1| small nuclear D3-like ribonucleoprotein [Encephalitozoon romaleae
SJ-2008]
Length = 87
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M I +P+KLLHEA+G I+T ET+NGD++RG++ E +D MN + +VTVT G P
Sbjct: 1 MPITVPLKLLHEAQGFIVTIETSNGDMYRGRMKEIDDYMNVVLDEVTVT-SFGSCSPRKE 59
Query: 61 IYIRGSKIRFLILPDMLKNAPMF 83
IRGS IRF +LP LK AP F
Sbjct: 60 AIIRGSSIRFFVLPPALKFAPFF 82
>gi|325182649|emb|CCA17104.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 133
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 56/82 (68%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+GIP LLH+ EG ++ E +G+++RG L E EDNMNC + + T +G + +Y
Sbjct: 9 VGIPTILLHDGEGTTVSIEMKSGEIYRGYLEETEDNMNCVLKEAMRTDINGNTTHVELVY 68
Query: 63 IRGSKIRFLILPDMLKNAPMFK 84
+RGS+I F++ PDMLK+APMFK
Sbjct: 69 VRGSQILFIVFPDMLKHAPMFK 90
>gi|326929848|ref|XP_003211067.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Meleagris
gallopavo]
gi|327289616|ref|XP_003229520.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Anolis
carolinensis]
gi|354491990|ref|XP_003508135.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cricetulus
griseus]
gi|395517578|ref|XP_003762952.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Sarcophilus
harrisii]
gi|344256042|gb|EGW12146.1| Small nuclear ribonucleoprotein Sm D3 [Cricetulus griseus]
Length = 84
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 43 MADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGI 101
M+++TVT+RDG+V + +YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ I
Sbjct: 1 MSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAI 60
Query: 102 LRAQAA 107
L+AQ A
Sbjct: 61 LKAQVA 66
>gi|213403558|ref|XP_002172551.1| small nuclear ribonucleoprotein Sm D3 [Schizosaccharomyces
japonicus yFS275]
gi|212000598|gb|EEB06258.1| small nuclear ribonucleoprotein Sm D3 [Schizosaccharomyces
japonicus yFS275]
Length = 98
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 62/119 (52%), Gaps = 39/119 (32%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+ + IKLLHEA+ AEDNMNC + D++VT RDG+V + +Y
Sbjct: 18 MSLCIKLLHEAQ--------------------AEDNMNCQLKDISVTARDGRVSHLDQVY 57
Query: 63 IRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGGR 121
IRGS IRFLI+PDMLKNAPMFK A RGRG P RGGR
Sbjct: 58 IRGSHIRFLIVPDMLKNAPMFKV------------------TPAVRGRG-TSLPTRGGR 97
>gi|449329731|gb|AGE96001.1| small nuclear ribonucleoprotein d3 [Encephalitozoon cuniculi]
Length = 87
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M++ +P+KLLHE++G I+T ET++GD++RG++ E +D MN + DV VT + +
Sbjct: 1 MAVTVPLKLLHESQGFIVTVETSSGDMYRGRVREVDDYMNLVLDDVVVTSNNSSLS-RKE 59
Query: 61 IYIRGSKIRFLILPDMLKNAPMFK 84
+ IRGS IRF +LP LK AP F+
Sbjct: 60 VLIRGSSIRFFVLPPALKFAPFFE 83
>gi|323445642|gb|EGB02152.1| hypothetical protein AURANDRAFT_35508 [Aureococcus
anophagefferens]
Length = 87
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+G+P+ L+H+ EG I+T E NGD +RG L E EDNMNC + D T T G + +I+
Sbjct: 9 VGVPLILMHDGEGTIVTIECKNGDTYRGFLDETEDNMNCVLKDATRTDAKGNKSQVEHIF 68
Query: 63 IRGSKIRFLILPDMLKNAP 81
+RGS+I F I P+MLK AP
Sbjct: 69 LRGSQIAFFIFPNMLKKAP 87
>gi|19173042|ref|NP_597593.1| similarity to SMALL NUCLEAR RIBONUCLEOPROTEIN D3 [Encephalitozoon
cuniculi GB-M1]
gi|19168709|emb|CAD26228.1| similarity to SMALL NUCLEAR RIBONUCLEOPROTEIN D3 [Encephalitozoon
cuniculi GB-M1]
Length = 87
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M++ +P+KLLHE++G I+T ET++GD++RG++ E +D MN + DV VT + +
Sbjct: 1 MAVTVPLKLLHESQGFIVTVETSSGDMYRGRVREVDDYMNLVLDDVVVTSNNSSLS-RKE 59
Query: 61 IYIRGSKIRFLILPDMLKNAPMF 83
+ IRGS IRF +LP LK AP F
Sbjct: 60 VLIRGSSIRFFVLPPALKFAPFF 82
>gi|303388687|ref|XP_003072577.1| small nuclear D3-like ribonucleoprotein [Encephalitozoon
intestinalis ATCC 50506]
gi|303301718|gb|ADM11217.1| small nuclear D3-like ribonucleoprotein [Encephalitozoon
intestinalis ATCC 50506]
Length = 86
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M + IP+KLLHEA+G ++T ET +GD++RG++ E +D MN + D VT + P
Sbjct: 1 MGVTIPLKLLHEAQGFVVTVETNSGDMYRGQMKEVDDYMNIILTDAVVT-SNSSCIPRKE 59
Query: 61 IYIRGSKIRFLILPDMLKNAPMF 83
+ IRGS IRF +LP LK AP F
Sbjct: 60 VVIRGSSIRFFVLPPALKFAPFF 82
>gi|429858964|gb|ELA33765.1| small nuclear ribonucleoprotein sm d3 [Colletotrichum
gloeosporioides Nara gc5]
Length = 93
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 28/115 (24%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+IGIPIKLL+EA+ DNMN + D+TVT RDG+V + +
Sbjct: 4 TIGIPIKLLNEAQ----------------------DNMNVQLKDITVTARDGRVSHLDQV 41
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGK--QGNKAGAAGRGKSGILRAQAARGRGRGG 114
YIRGS +RF I+PDML+NAPMF+ + +G G A G++ + RA+A+ GRGG
Sbjct: 42 YIRGSHVRFFIVPDMLRNAPMFRSRNVRGRGVGMAP-GRATVSRARAS---GRGG 92
>gi|219122966|ref|XP_002181806.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407082|gb|EEC47020.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 95
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 56/82 (68%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+GIPI +LH+AEG +I ET G+L RG L EAED MN + + V +G + +Y
Sbjct: 9 VGIPIVVLHDAEGAVIEVETKKGELIRGLLFEAEDMMNLYIKNAVVLDPNGVKRKTPQMY 68
Query: 63 IRGSKIRFLILPDMLKNAPMFK 84
+RG +I F++LPDMLK+APMFK
Sbjct: 69 LRGCEILFIVLPDMLKHAPMFK 90
>gi|154414287|ref|XP_001580171.1| Sm protein [Trichomonas vaginalis G3]
gi|121914386|gb|EAY19185.1| Sm protein [Trichomonas vaginalis G3]
Length = 119
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I +LHEA+G ++T ET G+++RG L +ED MN + DVT T G +YIRGS
Sbjct: 12 IAILHEADGFVVTIETKQGEMYRGTLFGSEDTMNVELHDVTYTNSKGVDSHKDKVYIRGS 71
Query: 67 KIRFLILPDMLKNAPMF---KGKQGNKAGAAG 95
I F +LPDM NAPMF K +G+ G AG
Sbjct: 72 NIVFFVLPDMFANAPMFIDEKKVKGHANGYAG 103
>gi|123480015|ref|XP_001323163.1| Sm protein [Trichomonas vaginalis G3]
gi|121906022|gb|EAY10940.1| Sm protein [Trichomonas vaginalis G3]
Length = 112
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS GIPIKLLHEA ++ GD +RG L EDNMNC + +V T +DG+
Sbjct: 1 MSNGIPIKLLHEATNFVVEIHLNTGDSYRGTLKYVEDNMNCWLTNVVHTQKDGQQIKFDK 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFK-GKQGNKAGAAGRGKSGILRAQAAR 108
Y+RGS I + LP+ML NA +FK G+ K +G+ + + + +
Sbjct: 61 TYVRGSNILYFDLPEMLLNARLFKTGETEVKKKYSGKLRRTFMTVKVRK 109
>gi|301099995|ref|XP_002899088.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262104400|gb|EEY62452.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 143
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 10/92 (10%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+GIP LLH+ EG I++ E G+ +RG L E EDNMNC M D T +G + +Y
Sbjct: 9 VGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTSQVEQVY 68
Query: 63 IRGSKIRFLILPDM----------LKNAPMFK 84
+RGS+I F++ PD+ LK+APMFK
Sbjct: 69 LRGSQILFIVFPDIYPLQPDIAVTLKHAPMFK 100
>gi|224004388|ref|XP_002295845.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209585877|gb|ACI64562.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 85
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVT-FRDGKVKPMANI 61
+GIPI LLH+AEG ++T ET G+L RG L EAED MN + V + G + + +
Sbjct: 1 VGIPIVLLHDAEGAVVTVETKRGELIRGLLFEAEDMMNLYLKKAVVLGPKPGAKRNVEQV 60
Query: 62 YIRGSKIRFLILPDMLKNAPMFK 84
Y+RG++I F++LP+ML++APMF+
Sbjct: 61 YVRGTEIVFIVLPEMLRHAPMFQ 83
>gi|348674274|gb|EGZ14093.1| hypothetical protein PHYSODRAFT_510917 [Phytophthora sojae]
Length = 146
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 13/95 (13%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+GIP LLH+ EG I++ E G+ +RG L E EDNMNC M D T +G + +Y
Sbjct: 9 VGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTTHVEQVY 68
Query: 63 IRGSKIRFLILPDM-------------LKNAPMFK 84
+RGS+I F++ PD+ LK+APMFK
Sbjct: 69 LRGSQILFIVFPDIYPLQPHTCGCIFTLKHAPMFK 103
>gi|403369356|gb|EJY84523.1| hypothetical protein OXYTRI_17631 [Oxytricha trifallax]
Length = 574
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 8/81 (9%)
Query: 33 VEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGKQGNKAG 92
+EAED MN + DV VT +DG+ + +++RGS++RF+I+PDMLKN+PMFK A
Sbjct: 1 MEAEDTMNMRLDDVYVTGKDGRQYHLDQVFVRGSQVRFIIIPDMLKNSPMFK----RIAN 56
Query: 93 AAGRGKSGILRAQAARGRGRG 113
A +GK+ +L A+GRGRG
Sbjct: 57 QAKKGKNALL----AKGRGRG 73
>gi|340508275|gb|EGR34016.1| lsm domain protein [Ichthyophthirius multifiliis]
Length = 93
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 56/106 (52%), Gaps = 27/106 (25%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+P+K+L E+E H+IT E GD FRG L E+E
Sbjct: 1 MSIGLPVKILRESESHVITVEMKTGDQFRGYLAESE------------------------ 36
Query: 61 IYIRGSKIRFLILPDMLKNAPMF---KGKQGNKAGAAGRGKSGILR 103
+Y+RG++IRF+++PD KNAPMF K + NK R K LR
Sbjct: 37 VYLRGAQIRFIVIPDFFKNAPMFKRVKAQTKNKNKTLIREKGRKLR 82
>gi|346321072|gb|EGX90672.1| tRNA methyltransferase subunit GCD14, putative [Cordyceps militaris
CM01]
Length = 712
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 35 AEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGK--QGNKAG 92
AEDNMN + D+TVT RDG+V + +YIRGS +RF I+PDML+NAPMF+ +G G
Sbjct: 633 AEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPDMLRNAPMFRSSNLRGRGVG 692
Query: 93 AAGRGKSGI 101
A RG++ +
Sbjct: 693 MA-RGRATV 700
>gi|296422411|ref|XP_002840754.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636977|emb|CAZ84945.1| unnamed protein product [Tuber melanosporum]
Length = 79
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 7/84 (8%)
Query: 39 MNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGK 98
MN + D+TVT RDG+V + +YIRGS +RF I+PDML+NAPMF+ + GRG
Sbjct: 1 MNVQLRDITVTARDGRVSHLDQVYIRGSHVRFFIVPDMLRNAPMFRSR-----AVRGRG- 54
Query: 99 SGILRAQAARGRGRGGPPQRGGRG 122
G+ R +A R R G RGGRG
Sbjct: 55 VGLARGRATVNRAR-GQQNRGGRG 77
>gi|300122650|emb|CBK23217.2| unnamed protein product [Blastocystis hominis]
Length = 125
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTV-TFRDGKVKPMANI 61
IG+P LL+EAEG +T +G ++RG ++E +DN N M +VT+ T ++ P +
Sbjct: 15 IGMPTLLLYEAEGCTALIQTRDGSIYRGIIMEVQDNWNLNMKNVTMKTKYSNEIIPFEML 74
Query: 62 YIRGSKIRFLILPDMLKNAPMFK---GKQGNKAGAAGRGKS 99
+IRG++I F++LP+M K++PMF+ + ++ + RG S
Sbjct: 75 FIRGAQISFIVLPEMFKHSPMFQRVIDFKNDRPCYSKRGSS 115
>gi|410730161|ref|XP_003671258.2| hypothetical protein NDAI_0G02400 [Naumovozyma dairenensis CBS
421]
gi|401780078|emb|CCD26015.2| hypothetical protein NDAI_0G02400 [Naumovozyma dairenensis CBS
421]
Length = 67
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 46/62 (74%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
IP+KLL+EA+GHI++ E G+ +RGKL+E+EDNMN + DV VT D K+ M ++++
Sbjct: 3 SIPVKLLNEAQGHIVSVELATGETYRGKLIESEDNMNIQLRDVIVTGTDSKMTRMDHVFV 62
Query: 64 RG 65
RG
Sbjct: 63 RG 64
>gi|224008695|ref|XP_002293306.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970706|gb|EED89042.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 182
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 19 TCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLK 78
T + NG+++RG L+ AED MN +++V T R+G+V + +Y+RGS +RF+ LPD+L+
Sbjct: 87 TQQMKNGEIYRGLLLNAEDTMNMTLSEVVRTARNGQVSKLPTVYLRGSGVRFIALPDLLR 146
Query: 79 NAPMFKGKQGNKA 91
NAP FK KA
Sbjct: 147 NAPAFKKVASMKA 159
>gi|71663921|ref|XP_818947.1| small nuclear ribonucleoprotein SmD3 [Trypanosoma cruzi strain CL
Brener]
gi|70884226|gb|EAN97096.1| small nuclear ribonucleoprotein SmD3, putative [Trypanosoma cruzi]
Length = 115
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+ IP+K+L +A G I+ E +NG+L+ G L E +DNMN + T + GK + ++
Sbjct: 3 TFSIPLKVLFDAIGTTISLEVSNGELYTGTLSEVQDNMNVLLISAKKTKKSGKTVDLNSV 62
Query: 62 YIRGSKIRFLILPDMLKNAP-MFKGKQGNKAGAAGRGKSGILRAQAARGRGR 112
++RGS I F LPD L+ +P + K Q RG S A+ RGR
Sbjct: 63 FVRGSSIVFFQLPDALRTSPALVKAGQVLTNALDNRGDSKGFGARRVVKRGR 114
>gi|340053110|emb|CCC47397.1| putative small nuclear ribonucleoprotein SmD3 [Trypanosoma vivax
Y486]
Length = 115
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+ +P+K+L++A G +++ E NG ++ G L + EDNMN + T + G+V+ MA++
Sbjct: 3 TFSVPLKVLYDAIGTVVSLEVANGSVYTGTLSQLEDNMNVLLTKAQKTSKSGRVENMASV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+RGS I F LPD L+ P KAG + A ARG G+G
Sbjct: 63 LVRGSHIVFFQLPDALRAGPALL-----KAGTI------VPSALDARGEGKG 103
>gi|161899479|ref|XP_001712973.1| spliceosomal snRNA-associated Sm core protein required for
pre-mRNA splicing [Bigelowiella natans]
gi|75756468|gb|ABA27361.1| spliceosomal snRNA-associated Sm core protein required for
pre-mRNA splicing [Bigelowiella natans]
Length = 141
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 55/82 (67%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
++GIP+KL+H+AE H I+ + +G L G+L+ +EDN N + V + ++ K
Sbjct: 7 NVGIPLKLIHQAEKHQISVKLKDGKLLIGELMNSEDNWNLCLKKVIIKEKENKSSKSMLY 66
Query: 62 YIRGSKIRFLILPDMLKNAPMF 83
++RG++I F+I+P++LK +P+F
Sbjct: 67 FVRGNQITFIIIPEILKYSPLF 88
>gi|397641451|gb|EJK74654.1| hypothetical protein THAOC_03654 [Thalassiosira oceanica]
Length = 90
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%)
Query: 24 NGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMF 83
+G+++RG L+ AED MN +++V T R+G+V + +Y+RGS IRF+ LPD+L+NAP F
Sbjct: 3 SGEIYRGLLLNAEDTMNMTLSEVVRTGRNGQVTKHSTVYLRGSGIRFIALPDLLRNAPAF 62
Query: 84 KGKQGNKA 91
K KA
Sbjct: 63 KKVASMKA 70
>gi|328351139|emb|CCA37539.1| Calcium-binding mitochondrial carrier protein SCaMC-1-B
[Komagataella pastoris CBS 7435]
Length = 521
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 46/54 (85%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGK 54
M++ IP+KLL+EA+GHII+ E T+G+ +RGKLVE+ED+MN + DVT+T +DGK
Sbjct: 1 MALSIPVKLLNEAQGHIISAELTSGESYRGKLVESEDSMNIQLKDVTLTAQDGK 54
>gi|296083703|emb|CBI23692.3| unnamed protein product [Vitis vinifera]
Length = 118
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 43/58 (74%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMA 59
S+GIP+KLLHEA GH++T E +G+L+RG ++E EDN NC + ++T T +D + + A
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDEEARQAA 61
>gi|68531941|ref|XP_723655.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478019|gb|EAA15220.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 215
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+G PIKL+HE GH I+ ET +G L+RG L+ AEDNMNC +++VTV +DGK + +
Sbjct: 1 MSVGTPIKLIHEGIGHTISVETKSGILYRGILLFAEDNMNCLLSNVTVVKQDGK-QILLE 59
Query: 61 IYIRGSKI--RFLILPDM 76
+ KI F+ LP +
Sbjct: 60 VCENSKKITKHFVFLPSL 77
>gi|146099718|ref|XP_001468724.1| putative small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|134073092|emb|CAM71812.1| putative small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
Length = 113
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+ IPIK+L +A ++ E G+++ G + E ++NMN + D T T R GK M +
Sbjct: 1 MAESIPIKVLFDALHLKVSIEVATGEVYHGTVEELQNNMNVLLKDATKTARGGKETKMDS 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+++RGS I F LPD L+ +P A R + +AQ RG G+G
Sbjct: 61 VFVRGSNIVFFQLPDALQTSP-----------ALLRAGEVVSKAQDTRGDGKG 102
>gi|10720074|sp|Q9QXA5.1|LSM4_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|6692064|emb|CAB65729.1| Lsm4 protein [Mus musculus]
Length = 137
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 22/115 (19%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQR 118
RGS I++L +PD + + ++R +AA+GRGRGGP Q+
Sbjct: 62 RGSTIKYLRIPDEIID---------------------MVREEAAKGRGRGGPQQK 95
>gi|399949598|gb|AFP65256.1| small nuclear ribonucleoprotein Sm D3 [Chroomonas mesostigmatica
CCMP1168]
Length = 83
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M +P++L+ EA ++T E+ G+ +RGKLV+ E+NMNC + + ++GK K
Sbjct: 1 MFTSLPLQLIFEARPFVVTIESKMGEKYRGKLVQVENNMNCYLENAIFR-KNGKSKFRNF 59
Query: 61 IYIRGSKIRFLILPDMLKNAPMFK 84
++IRG+ ++ + LPD+L+ P+ K
Sbjct: 60 VFIRGNNVKTIYLPDILREVPLLK 83
>gi|157876267|ref|XP_001686492.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|398022728|ref|XP_003864526.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
gi|68129566|emb|CAJ08109.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|322502761|emb|CBZ37844.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
Length = 113
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+ IPIK+L +A ++ E G+++ G + E ++NMN + D T T R GK M +
Sbjct: 1 MAESIPIKVLFDALHLKVSIEVATGEVYHGTVEELQNNMNVLLKDATKTARGGKETKMDS 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+++RGS I F LPD L+ +P A R + +A+ RG G+G
Sbjct: 61 VFVRGSNIVFFQLPDALQTSP-----------ALLRAGEVVSKAKDTRGDGKG 102
>gi|401428927|ref|XP_003878946.1| putative small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495195|emb|CBZ30499.1| putative small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 113
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+ IPIK+L++A ++ E G+++ G + E ++NMN + + T T R GK M +
Sbjct: 1 MAESIPIKVLYDALHLKVSIEVATGEVYHGTVEELQNNMNVLLKNATKTARGGKETKMDS 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+++RGS I F LPD L+ +P A R + +A+ RG G+G
Sbjct: 61 VFVRGSNIVFFQLPDALQTSP-----------ALLRAGEVVSKAKDTRGDGKG 102
>gi|296090161|emb|CBI39980.3| unnamed protein product [Vitis vinifera]
Length = 117
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 42/60 (70%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+GIP+KLLHEA GH++ E +G+L+RG ++E +DN NC + ++T T+ ++ P +
Sbjct: 4 SLGIPVKLLHEAAGHVVIVELKSGELYRGSMIECKDNWNCQLENITFTWFVKRLGPHWQV 63
>gi|159107430|ref|XP_001703995.1| Small nuclear ribonucleoprotein Sm D3, putative [Giardia lamblia
ATCC 50803]
gi|157432041|gb|EDO76321.1| Small nuclear ribonucleoprotein Sm D3, putative [Giardia lamblia
ATCC 50803]
Length = 90
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+I PI+LL EA ++ ET G ++ GKLV E ++ +++ T+T G+ +
Sbjct: 1 MTITAPIQLLFEAIDMCVSVETRTGSIYEGKLVSVEPTLSVTISNCTITHPTGQKETAQT 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNK 90
+ +RGS++RF+ +P+ L ++P+ KQGN+
Sbjct: 61 VMLRGSEVRFVSVPNALVDSPVL--KQGNR 88
>gi|429965752|gb|ELA47749.1| hypothetical protein VCUG_00710 [Vavraia culicis 'floridensis']
Length = 90
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M + +P+KLL+E E +T E NG GKL++ +D MN + DV +T +G +
Sbjct: 1 MKLSVPLKLLYECENFQLTVELDNGVKVTGKLMQMDDLMNLTLDDVVLTEANGHNIKVER 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQ 87
+ +RGS I+F++LP +L+++P K +
Sbjct: 61 MMVRGSLIQFIVLPPILRHSPFLKADE 87
>gi|357619535|gb|EHJ72069.1| hypothetical protein KGM_17625 [Danaus plexippus]
Length = 138
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGGRGG 123
RGS I++L +PD + + K+ + + GRG+ +GRGG R GRGG
Sbjct: 62 RGSTIKYLRIPDEVIDMV----KEETQVKSRGRGEI---------SKGRGGQNMRSGRGG 108
>gi|147768951|emb|CAN69253.1| hypothetical protein VITISV_038147 [Vitis vinifera]
Length = 611
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 40/55 (72%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+LLHEA GH++T E +G+LFRG L+E EDN NC + ++T T +D +V+ ++ Y
Sbjct: 40 QLLHEAAGHVVTVELKSGELFRGSLIECEDNWNCQLENITFTVKDEEVQAHSDFY 94
>gi|332376551|gb|AEE63415.1| unknown [Dendroctonus ponderosae]
Length = 135
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGR--GRGGPP 116
RGS I++L +P DM+K + K KQ + GRG AARG GR P
Sbjct: 62 RGSTIKYLRIPDEVIDMVKEETVTKNKQS-RDQKGGRGGQNQRNRPAARGNFGGRANKP 119
>gi|91084013|ref|XP_975325.1| PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated
[Tribolium castaneum]
Length = 163
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 14 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 73
Query: 64 RGSKIRFLILP----DMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGP 115
RGS I++L +P DM+K + K + + G GRG AARG RG P
Sbjct: 74 RGSTIKYLRIPDEVIDMVKEEAVVKNRGRDMKG--GRGGQNQRNRPAARGSYRGEP 127
>gi|253746256|gb|EET01663.1| Small nuclear ribonucleoprotein Sm D3, putative [Giardia
intestinalis ATCC 50581]
Length = 90
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M++ P++LL EA ++ E+ +G ++ GKL E ++ ++D T+T G+ +
Sbjct: 1 MTVTAPVQLLFEAIDMRVSVESRSGIIYEGKLASVEPTLSVIISDCTITHPTGQKETAHT 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNK 90
+ +RGS++RF+ +PD L N+P+ KQGN+
Sbjct: 61 VMLRGSEVRFVSVPDALMNSPVL--KQGNR 88
>gi|330038680|ref|XP_003239668.1| small nuclear ribonucleoprotein Sm D3 [Cryptomonas paramecium]
gi|327206592|gb|AEA38770.1| small nuclear ribonucleoprotein Sm D3 [Cryptomonas paramecium]
Length = 84
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
IPI LL E + +I+T ET NG +RG L E NMNC + D V D K K +I++
Sbjct: 4 SIPINLLLETKPYIVTIETRNGTKYRGSLNFIEKNMNCCLKDAIV-LTDMKKKKFNSIFL 62
Query: 64 RGSKIRFLILPDML 77
RG+ I ++LPDML
Sbjct: 63 RGNSIVVIMLPDML 76
>gi|13161882|emb|CAC33027.1| Lsm4 protein [Takifugu rubripes]
Length = 144
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 10/121 (8%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK-----QGNKAGAAGRGKSGILRAQAARGRGRGG 114
RGS I++L +P DM+K + KG+ Q NK GRG +G + +RGRG G
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEDVLSKGRGRGGAQQNKQQGKGRGGAGRVGVFGSRGRGLTG 121
Query: 115 P 115
P
Sbjct: 122 P 122
>gi|449542283|gb|EMD33263.1| hypothetical protein CERSUDRAFT_87573 [Ceriporiopsis subvermispora
B]
Length = 132
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG+ F G L+ ++ MN + +V T +G + + YI
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLINCDNFMNITLREVYQTSAEGDRFWKLKECYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGGRG 122
RGS I++L +PD L +A + + +AG + RG + ARGRG P RGGRG
Sbjct: 62 RGSTIKYLRVPDTLLDAVKEEQNRAREAGRSARGAH--VSGAGARGRGM---PTRGGRG 115
>gi|47217413|emb|CAG00773.1| unnamed protein product [Tetraodon nigroviridis]
Length = 131
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRG 119
RGS I++L +P DM+K + KG+ + GA + G R A RG P QR
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVLSKGR--GRGGAQQNKQQGKGRGGAGRGECVWQPWQRN 119
Query: 120 GRGGWGGPS 128
G W GP+
Sbjct: 120 D-GSWSGPA 127
>gi|154336783|ref|XP_001564627.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061662|emb|CAM38693.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 113
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+ IP+K+L +A ++ E G+++ G + E ++NMN + + T T R GK M +
Sbjct: 1 MAESIPMKVLFDALHLKVSIEVATGEVYHGIVEELQNNMNVLLKNATKTTRGGKETKMDS 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
+++RGS I F LPD L+ +P A R + +A+ RG G+G
Sbjct: 61 VFVRGSNIVFFQLPDALQTSP-----------ALLRAGEIVSKAKDTRGDGKG 102
>gi|168038469|ref|XP_001771723.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677030|gb|EDQ63506.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 73
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMANIYI 63
+P+KLLHE EGH +T E NGD+ RGKL+E+E+N + F R GK + +I+I
Sbjct: 1 VPLKLLHEGEGHGVTVELKNGDVCRGKLIESENNWTLQLDTANFIFSRTGKEVKLDSIFI 60
Query: 64 RGSKIRFLILPDM 76
RG +I+ ++ M
Sbjct: 61 RGRRIKLVLFQPM 73
>gi|410921860|ref|XP_003974401.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Takifugu
rubripes]
Length = 147
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMAN 60
I +P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M
Sbjct: 3 EIKLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE 62
Query: 61 IYIRGSKIRFLILP----DMLKNAPMFKGK-----QGNKAGAAGRGKSGILRAQAARGRG 111
YIRGS I++L +P DM+K + KG+ Q NK +RGRG
Sbjct: 63 CYIRGSTIKYLRIPDEIIDMVKEDVLSKGRGRGGAQQNKQ-QGKGRGGAGRGVFGSRGRG 121
Query: 112 RGGP 115
GP
Sbjct: 122 LTGP 125
>gi|432854576|ref|XP_004067969.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Oryzias
latipes]
Length = 144
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK-----QGNKAGAAGRGKSGILRAQAARGRGRGG 114
RGS I++L +P DM+K+ + KG+ Q NK +RGRG G
Sbjct: 62 RGSTIKYLRIPDEIIDMVKDEVVSKGRGRGGAQQNKQ-QGKGRGGAGRGVFGSRGRGMSG 120
Query: 115 P 115
P
Sbjct: 121 P 121
>gi|308158291|gb|EFO61046.1| Small nuclear ribonucleoprotein Sm D3, putative [Giardia lamblia
P15]
Length = 90
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M+I PI+LL EA ++ ET G ++ GKLV E ++ +++ T+T G+ +
Sbjct: 1 MTITAPIQLLFEAIDMRVSVETRAGTIYEGKLVSVEPTLSVTISNCTITHPTGQREIAQT 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNK 90
+ +RGS++RF+ +P L ++P+ KQGN+
Sbjct: 61 VMLRGSEVRFVSVPSALVDSPVL--KQGNR 88
>gi|440494060|gb|ELQ76472.1| Small nuclear ribonucleoprotein Sm D3 [Trachipleistophora
hominis]
Length = 90
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M +P+KLL+E E +T E NG GKLV+ +D MN + DV +T +G +
Sbjct: 1 MKPSVPLKLLYECENFQLTVELDNGTKATGKLVQVDDLMNLTLDDVVLTEINGHNTRIER 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQ 87
+ +RGS I+ +ILP +L+ +P K ++
Sbjct: 61 MMVRGSLIQLIILPPILQYSPFLKLEE 87
>gi|162606428|ref|XP_001713244.1| putative small nuclear ribonucleoprotein Sm D3 [Guillardia theta]
gi|12580710|emb|CAC27028.1| putative small nuclear ribonucleoprotein Sm D3 [Guillardia theta]
Length = 79
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 9 LLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKI 68
+L E++ ++IT E NG ++RGKL+ E+NMNC + + V + KV+ + +++RGS I
Sbjct: 9 ILRESKPYVITIECKNGFIYRGKLIHIEENMNCILKEAFVI-KKKKVQKLTLVFLRGSNI 67
Query: 69 RFLILPDML 77
I+PD+L
Sbjct: 68 SMFIIPDIL 76
>gi|348523129|ref|XP_003449076.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Oreochromis niloticus]
Length = 147
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK-----QGNKAGAAGRGKSGILRAQAARGRGRGG 114
RGS I++L +P DM+K + KG+ Q NK +G +RGRG G
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGAQQNKQ-QGKGRGAGGRGLFGSRGRGMTG 120
Query: 115 P 115
P
Sbjct: 121 P 121
>gi|42491563|gb|AAS16923.1| small nuclear ribonucleoprotein D3 polypeptide [Prionace glauca]
Length = 34
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/34 (67%), Positives = 31/34 (91%)
Query: 19 TCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD 52
TCET G+++RGKL+EAEDNMNC M+++TVT+RD
Sbjct: 1 TCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD 34
>gi|226372266|gb|ACO51758.1| U6 snRNA-associated Sm-like protein LSm4 [Rana catesbeiana]
Length = 140
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K M KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVMSKGR 88
>gi|147902804|ref|NP_001088454.1| LSM4 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|54311207|gb|AAH84779.1| LOC495318 protein [Xenopus laevis]
Length = 138
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K M KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVMSKGR 88
>gi|45361593|ref|NP_989371.1| LSM4 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|39849973|gb|AAH64199.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Xenopus (Silurana) tropicalis]
gi|52078460|gb|AAH82491.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Xenopus (Silurana) tropicalis]
Length = 138
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K M KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVMSKGR 88
>gi|395848095|ref|XP_003796696.1| PREDICTED: uncharacterized protein LOC100963645 [Otolemur
garnettii]
Length = 312
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 175 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 234
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGI 101
RGS I++L +PD + + M K + A GRG+ G+
Sbjct: 235 RGSTIKYLRIPDEIID--MVK----EEVVAKGRGRGGL 266
>gi|395328270|gb|EJF60663.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 132
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG+ F G LV ++ MN + +V T +G K + YI
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDKFWKLRECYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGP 115
RGS I++L +PD L +A ++ N+A AGR G A RGRG P
Sbjct: 62 RGSTIKYLRVPDTLLDAV---KEEQNRAREAGRSARGA-HVSGAGQRGRGAP 109
>gi|390597253|gb|EIN06653.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 130
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG+ F G L+ ++ MN + +V T DG + + YI
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLINCDNFMNITLREVYQTSADGERFWKLKECYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQ 117
RGS I++L +PD L +A + + +AG + RG + + GRG G PQ
Sbjct: 62 RGSTIKYLRVPDTLLDAVKEEQTRAREAGRSARG------SHVSGGRGGRGAPQ 109
>gi|270007999|gb|EFA04447.1| hypothetical protein TcasGA2_TC014750 [Tribolium castaneum]
Length = 130
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 14 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 73
Query: 64 RGSKIRFLILP----DMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGR 112
RGS I++L +P DM+K + K + + G GRG AARG R
Sbjct: 74 RGSTIKYLRIPDEVIDMVKEEAVVKNRGRDMKG--GRGGQNQRNRPAARGSYR 124
>gi|403303582|ref|XP_003942405.1| PREDICTED: uncharacterized protein LOC101034609 [Saimiri
boliviensis boliviensis]
Length = 285
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 148 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 207
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 208 RGSTIKYLRIPDEIIDMVKEEVVAKGR 234
>gi|389743937|gb|EIM85121.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 130
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG+ F G LV ++ MN + +V T DG + + YI
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGENFNGHLVNCDNFMNITLREVYQTSADGERFWKVKECYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQ 117
RGS I+++ +P+ L + + + +AG + RG RGRGRGG PQ
Sbjct: 62 RGSTIKYIRVPETLLDVVKEEQLRAREAGKSQRG------GLNDRGRGRGGLPQ 109
>gi|209735614|gb|ACI68676.1| U6 snRNA-associated Sm-like protein LSm4 [Salmo salar]
Length = 150
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVVSKGR 88
>gi|209733716|gb|ACI67727.1| U6 snRNA-associated Sm-like protein LSm4 [Salmo salar]
Length = 147
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVVSKGR 88
>gi|427784849|gb|JAA57876.1| Putative small nuclear ribonucleoprotein snrnp [Rhipicephalus
pulchellus]
Length = 142
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGKQGNKAGAAGRGKSG 100
RGS I++L +P DM+K + KG+ GRG +G
Sbjct: 62 RGSTIKYLRIPDEVIDMVKEETLIKGR--------GRGDAG 94
>gi|354473886|ref|XP_003499163.1| PREDICTED: hypothetical protein LOC100769464 [Cricetulus griseus]
Length = 391
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANI 61
+ +P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M
Sbjct: 253 LMLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPEC 312
Query: 62 YIRGSKIRFLILPDML 77
YIRGS I++L +PD +
Sbjct: 313 YIRGSTIKYLRIPDEI 328
>gi|449017546|dbj|BAM80948.1| Sm protein D3 [Cyanidioschyzon merolae strain 10D]
Length = 170
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
+ +P LL EA+ I++ ET NG +RG+L MN ++ VTV G+ +
Sbjct: 8 AFDLPRALLREAKNQIVSVETKNGMEYRGRLDNVSSRMNLVLSAVTVLNATGERTQKNRV 67
Query: 62 YIRGSKIRFLILPDMLKNAP----MFKGKQGNKAG 92
+RG I ++LP+ L++AP + + KQ KA
Sbjct: 68 LVRGDSIVLVVLPEALEDAPQLDVLLQVKQARKAA 102
>gi|328774253|gb|EGF84290.1| hypothetical protein BATDEDRAFT_85018 [Batrachochytrium
dendrobatidis JAM81]
Length = 132
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL++A+GH + E NGD F G LV + MN + +V T DG K + IYI
Sbjct: 2 LPLSLLNKAQGHPMLIELKNGDTFNGHLVNCDPYMNVNLREVIRTSADGEKFWKIPEIYI 61
Query: 64 RGSKIRFLILPDML 77
RGS I++L +PD +
Sbjct: 62 RGSTIKYLRVPDEI 75
>gi|148696909|gb|EDL28856.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Mus musculus]
Length = 143
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMAN 60
S +P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M
Sbjct: 4 SCSLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE 63
Query: 61 IYIRGSKIRFLILPDML 77
YIRGS I++L +PD +
Sbjct: 64 CYIRGSTIKYLRIPDEI 80
>gi|41152340|ref|NP_956990.1| U6 snRNA-associated Sm-like protein LSm4 [Danio rerio]
gi|37589787|gb|AAH59435.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Danio rerio]
gi|38328316|gb|AAH62285.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Danio rerio]
Length = 143
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVVSKGR 88
>gi|346469961|gb|AEO34825.1| hypothetical protein [Amblyomma maculatum]
Length = 142
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEVIDMVKEETLVKGR 88
>gi|427778567|gb|JAA54735.1| Putative small nuclear ribonucleoprotein snrnp [Rhipicephalus
pulchellus]
Length = 167
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 6 PIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIR 64
P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YIR
Sbjct: 28 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 87
Query: 65 GSKIRFLILP----DMLKNAPMFKGKQGNKAGAAGRGKSG 100
GS I++L +P DM+K + KG+ GRG +G
Sbjct: 88 GSTIKYLRIPDEVIDMVKEETLIKGR--------GRGDAG 119
>gi|167516422|ref|XP_001742552.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779176|gb|EDQ92790.1| predicted protein [Monosiga brevicollis MX1]
Length = 115
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A H++ E NG+ + G L + ++ MN M DVT+T +DG + M YI
Sbjct: 2 LPLSLLRAASNHMMLVELKNGETYNGHLSKCDNYMNITMRDVTLTSKDGDRFWKMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I+FL +PD
Sbjct: 62 RGNNIKFLRIPD 73
>gi|449279546|gb|EMC87118.1| U6 snRNA-associated Sm-like protein LSm4, partial [Columba livia]
Length = 138
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVVSKGR 88
>gi|395513176|ref|XP_003760805.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Sarcophilus
harrisii]
Length = 152
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 15 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 74
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 75 RGSTIKYLRIPDEIIDMVKEEVVSKGR 101
>gi|409080918|gb|EKM81278.1| hypothetical protein AGABI1DRAFT_112946 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197836|gb|EKV47763.1| hypothetical protein AGABI2DRAFT_192916 [Agaricus bisporus var.
bisporus H97]
Length = 131
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 26/129 (20%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ + E NG+ F G LV ++ MN + +V T DG + + YI
Sbjct: 2 LPLSLLSAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADGDRFWKLKECYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGGRGG 123
RGS I++L +PD L + Q + R R RGG
Sbjct: 62 RGSTIKYLRVPDTLLD-------------------------QVKEEQNRAREANRNSRGG 96
Query: 124 WGGPSRGGR 132
GP+RGGR
Sbjct: 97 HTGPNRGGR 105
>gi|350535801|ref|NP_001232447.1| U6 snRNA-associated Sm-like protein LSm4 [Taeniopygia guttata]
gi|363743848|ref|XP_418245.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Gallus
gallus]
gi|197129949|gb|ACH46447.1| putative LSM4 homolog U6 small nuclear RNA associated
[Taeniopygia guttata]
Length = 138
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVVSKGR 88
>gi|326934546|ref|XP_003213349.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Meleagris
gallopavo]
Length = 174
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 38 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 97
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 98 RGSTIKYLRIPDEIIDMVKEEVVSKGR 124
>gi|355700149|gb|AES01356.1| LSM4-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 153
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 17 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 76
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 77 RGSTIKYLRIPDEIIDMVKEEVVAKGR 103
>gi|119605093|gb|EAW84687.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Homo sapiens]
Length = 163
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMA 59
+ +P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M
Sbjct: 22 FAFQLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMP 81
Query: 60 NIYIRGSKIRFLILP----DMLKNAPMFKGK 86
YIRGS I++L +P DM+K + KG+
Sbjct: 82 ECYIRGSTIKYLRIPDEIIDMVKEEVVAKGR 112
>gi|307195781|gb|EFN77595.1| U6 snRNA-associated Sm-like protein LSm4 [Harpegnathos saltator]
Length = 138
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 1 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNVNLREVICTSRDGDKFWRMPECYI 60
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 61 RGSTIKYLRIPD 72
>gi|301753917|ref|XP_002912773.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like
[Ailuropoda melanoleuca]
Length = 152
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVVAKGR 88
>gi|344283091|ref|XP_003413306.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Loxodonta
africana]
Length = 151
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 14 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 73
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K+ + KG+
Sbjct: 74 RGSTIKYLRIPDEIIDMVKDEVVAKGR 100
>gi|256083180|ref|XP_002577827.1| U6 snrna-associated sm-like protein lsm4 [Schistosoma mansoni]
gi|360044788|emb|CCD82336.1| U6 snrna-associated sm-like protein lsm4 [Schistosoma mansoni]
Length = 142
Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A + E +G+ + G LV +D MN + +V T RDG + M YI
Sbjct: 2 LPVTLLKAATNLPMLVELKSGETYNGHLVACDDWMNIHLKEVICTSRDGDRFWKMPECYI 61
Query: 64 RGSKIRFLILPDMLKN---APMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGP 115
RGS I++L +PD + + + K N++ +A G+ G R + ARGRG P
Sbjct: 62 RGSIIKYLRIPDDVIDKVKEDLQLAKMRNRSQSADTGRGGFHRNK-ARGRGGNAP 115
>gi|194859892|ref|XP_001969475.1| GG23936 [Drosophila erecta]
gi|190661342|gb|EDV58534.1| GG23936 [Drosophila erecta]
Length = 154
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + DV T +DG + M YI
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|195051225|ref|XP_001993055.1| GH13613 [Drosophila grimshawi]
gi|193900114|gb|EDV98980.1| GH13613 [Drosophila grimshawi]
Length = 155
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + DV T +DG + M YI
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|78706862|ref|NP_001027236.1| CG17768, isoform A [Drosophila melanogaster]
gi|320544912|ref|NP_001188778.1| CG17768, isoform B [Drosophila melanogaster]
gi|45445082|gb|AAF52938.3| CG17768, isoform A [Drosophila melanogaster]
gi|201065957|gb|ACH92388.1| FI07244p [Drosophila melanogaster]
gi|318068412|gb|ADV37028.1| CG17768, isoform B [Drosophila melanogaster]
Length = 154
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + DV T +DG + M YI
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|25012547|gb|AAN71375.1| RE35747p [Drosophila melanogaster]
Length = 154
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + DV T +DG + M YI
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|355703322|gb|EHH29813.1| Glycine-rich protein, partial [Macaca mulatta]
gi|440903986|gb|ELR54561.1| U6 snRNA-associated Sm-like protein LSm4, partial [Bos grunniens
mutus]
Length = 139
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVVAKGR 88
>gi|195578187|ref|XP_002078947.1| GD22262 [Drosophila simulans]
gi|194190956|gb|EDX04532.1| GD22262 [Drosophila simulans]
Length = 154
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + DV T +DG + M YI
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|242207126|ref|XP_002469417.1| predicted protein [Postia placenta Mad-698-R]
gi|220731446|gb|EED85290.1| predicted protein [Postia placenta Mad-698-R]
Length = 106
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG+ F G LV ++ MN + +V T DG + + YI
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTNADGDRFWKLKECYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RGS I++L +PD L +A + + +AG + RG
Sbjct: 62 RGSTIKYLRVPDTLLDAVKEEQNKAREAGRSARG 95
>gi|355755618|gb|EHH59365.1| hypothetical protein EGM_09452, partial [Macaca fascicularis]
Length = 138
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 1 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 60
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 61 RGSTIKYLRIPDEIIDMVKEEVVAKGR 87
>gi|348558677|ref|XP_003465143.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Cavia
porcellus]
Length = 139
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEAVAKGR 88
>gi|426230288|ref|XP_004009208.1| PREDICTED: uncharacterized protein LOC101110507, partial [Ovis
aries]
Length = 207
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 6 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 65
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 66 RGSTIKYLRIPDEIIDMVKEEVVAKGR 92
>gi|387016780|gb|AFJ50509.1| u6 snRNA-associated Sm-like protein LSm4-like [Crotalus
adamanteus]
Length = 139
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVVSKGR 88
>gi|6912486|ref|NP_036453.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Homo sapiens]
gi|78369240|ref|NP_001030513.1| U6 snRNA-associated Sm-like protein LSm4 [Bos taurus]
gi|160837874|ref|NP_001104275.1| LSM4 homolog, U6 small nuclear RNA associated [Canis lupus
familiaris]
gi|386780610|ref|NP_001247502.1| U6 snRNA-associated Sm-like protein LSm4 [Macaca mulatta]
gi|296233291|ref|XP_002761949.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Callithrix
jacchus]
gi|297704123|ref|XP_002828970.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Pongo abelii]
gi|338718643|ref|XP_001500651.3| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Equus
caballus]
gi|397493881|ref|XP_003817824.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Pan paniscus]
gi|402904782|ref|XP_003915219.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Papio anubis]
gi|410950868|ref|XP_003982124.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Felis catus]
gi|426387786|ref|XP_004060343.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Gorilla gorilla gorilla]
gi|10720082|sp|Q9Y4Z0.1|LSM4_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm4; AltName:
Full=Glycine-rich protein; Short=GRP
gi|109892572|sp|Q3ZBK6.1|LSM4_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|5919149|gb|AAD56228.1|AF182290_1 U6 snRNA-associated Sm-like protein LSm4 [Homo sapiens]
gi|6563244|gb|AAF17216.1|AF117235_1 glycine-rich protein [Homo sapiens]
gi|9623197|gb|AAF90055.1|AF251218_1 LSm4 autoantigen [Homo sapiens]
gi|5262858|emb|CAB45867.1| Lsm4 protein [Homo sapiens]
gi|12653237|gb|AAH00387.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|13177763|gb|AAH03652.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|18645159|gb|AAH22198.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|23273864|gb|AAH23665.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|73587230|gb|AAI03244.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119605092|gb|EAW84686.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|190690627|gb|ACE87088.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
protein [synthetic construct]
gi|190691985|gb|ACE87767.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
protein [synthetic construct]
gi|208966682|dbj|BAG73355.1| LSM4 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296486080|tpg|DAA28193.1| TPA: U6 snRNA-associated Sm-like protein LSm4 [Bos taurus]
gi|380784377|gb|AFE64064.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Macaca
mulatta]
gi|383408443|gb|AFH27435.1| U6 snRNA-associated Sm-like protein LSm4 [Macaca mulatta]
gi|410214894|gb|JAA04666.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410249724|gb|JAA12829.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410289766|gb|JAA23483.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410328789|gb|JAA33341.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
Length = 139
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVVAKGR 88
>gi|328780963|ref|XP_624908.3| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Apis
mellifera]
Length = 138
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + +V T RDG K M YI
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|345488677|ref|XP_003425963.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Nasonia
vitripennis]
Length = 138
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|332019235|gb|EGI59745.1| U6 snRNA-associated Sm-like protein LSm4 [Acromyrmex echinatior]
Length = 138
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 1 LPLTLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 60
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 61 RGSTIKYLRIPD 72
>gi|307178481|gb|EFN67170.1| U6 snRNA-associated Sm-like protein LSm4 [Camponotus floridanus]
Length = 139
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLTLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|195146798|ref|XP_002014371.1| GL19160 [Drosophila persimilis]
gi|194106324|gb|EDW28367.1| GL19160 [Drosophila persimilis]
Length = 151
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + DV T +DG + M YI
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|242212742|ref|XP_002472203.1| predicted protein [Postia placenta Mad-698-R]
gi|220728761|gb|EED82649.1| predicted protein [Postia placenta Mad-698-R]
Length = 96
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG+ F G LV ++ MN + +V T DG + + YI
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTNADGDRFWKLKECYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSG 100
RGS I++L +PD L +A ++ NKA AGR G
Sbjct: 62 RGSTIKYLRVPDTLLDAV---KEEQNKAREAGRSARG 95
>gi|383858764|ref|XP_003704869.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Megachile rotundata]
Length = 158
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANI 61
+ +P+ LL A+ H + E NG+ + G LV + MN + +V T RDG K M
Sbjct: 19 VDLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPEC 78
Query: 62 YIRGSKIRFLILPD 75
YIRGS I++L +PD
Sbjct: 79 YIRGSTIKYLRIPD 92
>gi|149571864|ref|XP_001512156.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like, partial
[Ornithorhynchus anatinus]
Length = 138
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 1 LPLSLLKTAQNHPYLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 60
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 61 RGSTIKYLRIPDEIIDMVKEEVVSKGR 87
>gi|294916931|ref|XP_002778398.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239886770|gb|EER10193.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
Length = 81
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 39 MNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGKQ 87
MN +A+V VT +DGK + YIRGSKIR++++PD L+ APMFK ++
Sbjct: 1 MNLLIAEVVVTRKDGKQTSLEQAYIRGSKIRYIVVPDNLRYAPMFKPRR 49
>gi|157823641|ref|NP_001099543.1| U6 snRNA-associated Sm-like protein LSm4 [Rattus norvegicus]
gi|159032056|ref|NP_056631.2| U6 snRNA-associated Sm-like protein LSm4 [Mus musculus]
gi|12846677|dbj|BAB27261.1| unnamed protein product [Mus musculus]
gi|20073103|gb|AAH26747.1| Lsm4 protein [Mus musculus]
gi|26354156|dbj|BAC40708.1| unnamed protein product [Mus musculus]
gi|74198684|dbj|BAE39816.1| unnamed protein product [Mus musculus]
gi|74228648|dbj|BAE25390.1| unnamed protein product [Mus musculus]
gi|148696910|gb|EDL28857.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Mus musculus]
gi|149036057|gb|EDL90723.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_a [Rattus norvegicus]
Length = 138
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|417408054|gb|JAA50600.1| Putative small nuclear ribonucleoprotein snrnp, partial [Desmodus
rotundus]
Length = 142
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 5 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 64
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 65 RGSTIKYLRIPDEIIDMVKEEVVAKGR 91
>gi|38047763|gb|AAR09784.1| similar to Drosophila melanogaster CG17768, partial [Drosophila
yakuba]
Length = 152
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 6 PIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIR 64
P+ LL A+ H + E NG+ + G LV + MN + DV T +DG + M YIR
Sbjct: 1 PLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIR 60
Query: 65 GSKIRFLILPD 75
GS I++L +PD
Sbjct: 61 GSTIKYLRIPD 71
>gi|170578381|ref|XP_001894384.1| Probable U6 snRNA-associated Sm-like protein LSm4 [Brugia malayi]
gi|158599053|gb|EDP36777.1| Probable U6 snRNA-associated Sm-like protein LSm4, putative [Brugia
malayi]
Length = 163
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANI 61
+ +P+ LL A+ H + E NG+ + G LV + MN + D T RDG + M +
Sbjct: 32 LQLPLSLLRTAQNHPMLVELKNGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEV 91
Query: 62 YIRGSKIRFLILPD 75
Y+RGS I++L +PD
Sbjct: 92 YVRGSTIKYLRIPD 105
>gi|303279759|ref|XP_003059172.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459008|gb|EEH56304.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 129
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + MAN Y+
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVSCDTWMNVHLKEVICTSKDGDRFWRMANCYV 61
Query: 64 RGSKIRFLILPD 75
RG+ I+++ +PD
Sbjct: 62 RGNTIKYVCVPD 73
>gi|351701223|gb|EHB04142.1| U6 snRNA-associated Sm-like protein LSm4, partial [Heterocephalus
glaber]
Length = 117
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVVAKGR 88
>gi|392579756|gb|EIW72883.1| hypothetical protein TREMEDRAFT_24586, partial [Tremella
mesenterica DSM 1558]
Length = 104
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+G + E NG F G LVE ++ MN + +V T DG + M ++I
Sbjct: 1 LPLTLLNAAQGKPMLVELKNGVTFNGHLVECDNFMNVTLREVYQTSADGERFWKMKEVFI 60
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSG 100
+G+ I++ + D + ++ F+ ++ N+A A RG+S
Sbjct: 61 KGNIIKYFRIADAILDSA-FEQQEKNRAAAKTRGQSA 96
>gi|392560868|gb|EIW54050.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 161
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIY 62
G+P+ LL+ A+ + E NG+ F G LV ++ MN + + T +G + + Y
Sbjct: 31 GLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREAYQTSAEGDRFWKLKECY 90
Query: 63 IRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
IRGS I++L +PD L +A + + +AG + RG
Sbjct: 91 IRGSTIKYLRVPDTLLDAVKDEQNRAREAGRSARG 125
>gi|350409693|ref|XP_003488818.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Bombus
impatiens]
gi|380028027|ref|XP_003697713.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Apis
florea]
Length = 139
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + +V T RDG K M YI
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|443711054|gb|ELU05001.1| hypothetical protein CAPTEDRAFT_200433 [Capitella teleta]
Length = 136
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A H + E NG+ + G LV ++ MN M +V T RDG + M Y+
Sbjct: 2 LPLSLLRTAVNHPMLVELKNGETYNGHLVSCDNWMNINMREVICTSRDGDRFWRMPECYV 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K M K K
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEDNMMKHK 88
>gi|12230258|sp|Q43582.1|LSM4_TOBAC RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 10; Short=GRP 10
gi|790473|emb|CAA58702.1| unnamed protein product [Nicotiana tabacum]
Length = 146
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M Y+
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYV 61
Query: 64 RGSKIRFLILPDML--KNAPMFKGKQGNKAGAAGRGKSGILRAQAARGR 110
RG+ I++L +PD + K K + K GR ++ R +A GR
Sbjct: 62 RGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGR 110
>gi|324523014|gb|ADY48174.1| U6 snRNA-associated Sm-like protein LSm4 [Ascaris suum]
Length = 166
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + D T RDG + M +Y+
Sbjct: 39 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDAWMNIHLRDAICTSRDGDRFLKMPEVYV 98
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 99 RGSTIKYLRIPD 110
>gi|255076339|ref|XP_002501844.1| predicted protein [Micromonas sp. RCC299]
gi|226517108|gb|ACO63102.1| predicted protein [Micromonas sp. RCC299]
Length = 123
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL ++GH + E NG+ + G LV + MN + +V T +DG + MAN Y+
Sbjct: 2 LPLSLLKTSQGHPMLVELKNGETYNGHLVSCDTWMNVHLREVICTSKDGDRFWRMANCYV 61
Query: 64 RGSKIRFLILPD 75
RG+ I+++ +PD
Sbjct: 62 RGNTIKYICVPD 73
>gi|340718599|ref|XP_003397752.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like isoform
1 [Bombus terrestris]
Length = 154
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + +V T RDG K M YI
Sbjct: 17 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYI 76
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 77 RGSTIKYLRIPD 88
>gi|195434128|ref|XP_002065055.1| GK14878 [Drosophila willistoni]
gi|194161140|gb|EDW76041.1| GK14878 [Drosophila willistoni]
Length = 303
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + DV T +DG + M YI
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|260793240|ref|XP_002591620.1| hypothetical protein BRAFLDRAFT_281075 [Branchiostoma floridae]
gi|229276829|gb|EEN47631.1| hypothetical protein BRAFLDRAFT_281075 [Branchiostoma floridae]
Length = 126
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G L ++ MN + DV T RDG + M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLEACDNWMNIKLRDVICTSRDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD----MLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRG 119
RGS I++L +PD M+K + K ++ + G+ GRG+ G + RGRGGP +RG
Sbjct: 62 RGSTIKYLRIPDEVIDMVKEDIVSK-QRTKQQGSRGRGRGGPVHRGGFGSRGRGGPDKRG 120
Query: 120 GRGG 123
GRGG
Sbjct: 121 GRGG 124
>gi|328862497|gb|EGG11598.1| hypothetical protein MELLADRAFT_31042 [Melampsora larici-populina
98AG31]
Length = 108
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LLH A+G + E NG+ F G L+++++ MN M +V +T DG K ++ YI
Sbjct: 1 LPLALLHGAQGKPMLVELKNGETFNGHLIQSDNFMNLTMREVYLTSSDGEKFWKLSECYI 60
Query: 64 RGSKIRFLILPD 75
RG+ I+++ + D
Sbjct: 61 RGNTIKYIRVTD 72
>gi|253735672|ref|NP_001156694.1| U6 snRNA-associated Sm-like protein [Acyrthosiphon pisum]
gi|239791415|dbj|BAH72178.1| ACYPI008634 [Acyrthosiphon pisum]
Length = 134
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + +V T +DG + + YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVTCDSWMNINLREVICTSKDGDRFWRLPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMF---KGKQGNKAGAAGRG-KSGILRAQAARGRGRGGP 115
RGS I++L +P DM+K + +G+ N+ A RG + G GP
Sbjct: 62 RGSMIKYLRIPDEIFDMVKEDIVVNKARGRTDNQKNRAPRGARQGFSGRGGGSNNRGTGP 121
Query: 116 PQRGG 120
Q+ G
Sbjct: 122 QQQRG 126
>gi|342180491|emb|CCC89967.1| putative small nuclear ribonucleoprotein SmD3 [Trypanosoma
congolense IL3000]
Length = 115
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
IP+K+L++A G ++ E NG+L+ G L E +NM + T G+ M + +
Sbjct: 5 SIPLKVLYDAVGTTVSLELKNGELYTGTLSELVENMGVVLTSARKTTMAGREVDMPTVLV 64
Query: 64 RGSKIRFLILPDMLKNAP 81
G I F LPD L+ +P
Sbjct: 65 SGKNIVFFQLPDALQASP 82
>gi|449529475|ref|XP_004171725.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|321456471|gb|EFX67578.1| hypothetical protein DAPPUDRAFT_218645 [Daphnia pulex]
Length = 135
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T +DG + M YI
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKS 99
RGS I++L +PD + + M K + A GRG+S
Sbjct: 62 RGSTIKYLRIPDEVID--MVK----EEVVAKGRGRS 91
>gi|223974607|gb|ACN31491.1| unknown [Zea mays]
Length = 146
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG K M YI
Sbjct: 2 LPLSLLKTAQGHPMLVEPKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|218187914|gb|EEC70341.1| hypothetical protein OsI_01238 [Oryza sativa Indica Group]
Length = 147
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG K M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|449526219|ref|XP_004170111.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|66807347|ref|XP_637396.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853183|sp|Q54KX4.1|LSM4_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|60465817|gb|EAL63891.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 177
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL +GH I E NG+ + G LV ++ MN + +V T +D K + + YI
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGGRGG 123
RG+ I+++ +PD + + + + +Q + R S RGRGRG GRG
Sbjct: 62 RGNTIKYISVPDEIIDL-VAEEEQTLRTTYQQRNDSN-------RGRGRGDGFAGRGRGD 113
Query: 124 WGGPSRG 130
G RG
Sbjct: 114 ASGRGRG 120
>gi|293335959|ref|NP_001170512.1| uncharacterized LOC100384520 [Zea mays]
gi|238005774|gb|ACR33922.1| unknown [Zea mays]
gi|413947013|gb|AFW79662.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|414876859|tpg|DAA53990.1| TPA: U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG K M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|357511251|ref|XP_003625914.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|357516335|ref|XP_003628456.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355500929|gb|AES82132.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355522478|gb|AET02932.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 150
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|115435742|ref|NP_001042629.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|12230291|sp|Q9LGE6.1|LSM4_ORYSJ RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|9711887|dbj|BAB07978.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|108792648|dbj|BAE95809.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|113532160|dbj|BAF04543.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|215704752|dbj|BAG94780.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618133|gb|EEE54265.1| hypothetical protein OsJ_01157 [Oryza sativa Japonica Group]
Length = 147
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG K M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|393905582|gb|EFO18954.2| hypothetical protein LOAG_09541 [Loa loa]
Length = 135
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E +G+ + G LV + MN + D T RDG + M +Y+
Sbjct: 3 LPLSLLRTAQNHPMLVELKSGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYV 62
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 63 RGSTIKYLRIPD 74
>gi|414876860|tpg|DAA53991.1| TPA: hypothetical protein ZEAMMB73_426325 [Zea mays]
Length = 172
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG K M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|449672414|ref|XP_002167952.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Hydra
magnipapillata]
Length = 128
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL ++ H + E NG+ + G LV ++ MN + +V T RDG + M+ YI
Sbjct: 3 LPLTLLQTSQNHPMLVELKNGETYNGHLVTCDNWMNINLREVICTSRDGDRFWRMSQCYI 62
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 63 RGSTIKYLRIPD 74
>gi|324507721|gb|ADY43268.1| U6 snRNA-associated Sm-like protein LSm4 [Ascaris suum]
Length = 130
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + D T RDG + M +Y+
Sbjct: 3 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDAWMNIHLRDAICTSRDGDRFLKMPEVYV 62
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 63 RGSTIKYLRIPD 74
>gi|361128454|gb|EHL00389.1| putative Small nuclear ribonucleoprotein Sm D3 [Glarea lozoyensis
74030]
Length = 266
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 12/53 (22%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGK 54
+IGIPIKLL+EA+ ++RGKL+EAEDNMN + D+TVT RDG+
Sbjct: 4 TIGIPIKLLNEAQ------------VYRGKLLEAEDNMNVQLKDITVTARDGR 44
>gi|157109644|ref|XP_001650762.1| small nuclear ribonucleoprotein sm [Aedes aegypti]
gi|108878946|gb|EAT43171.1| AAEL005355-PA [Aedes aegypti]
Length = 154
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + +V T +DG K M YI
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|226491554|ref|NP_001152235.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|195654155|gb|ACG46545.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG K M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|242056887|ref|XP_002457589.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
gi|241929564|gb|EES02709.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
Length = 145
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG K M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|357129770|ref|XP_003566534.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Brachypodium distachyon]
gi|326528247|dbj|BAJ93305.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 142
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG K M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|326516310|dbj|BAJ92310.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326521472|dbj|BAK00312.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 143
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG K M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|154345502|ref|XP_001568688.1| putative small nuclear ribonucleaoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066030|emb|CAM43815.1| putative small nuclear ribonucleaoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 141
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNM-NCAMADVTVTFRDGKVKPMANIY 62
IP ++ EA +T ET GDL++GKL + + + N + DV +D + +
Sbjct: 10 DIPSSVVFEALHLRVTVETVEGDLYKGKLADFDVSRGNIELVDVRHQAKDSTYRFYERVT 69
Query: 63 IRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG--KSGILRAQAARGRGRGGPPQRGG 120
+RGS IR ++LP +K AP + +Q + + ++ LR+ PP R
Sbjct: 70 VRGSNIRIILLPQEMKAAPSLQWRQDSVQQELTKSLKRTHFLRS--------VMPPPRPV 121
Query: 121 RGGWGGP 127
R G P
Sbjct: 122 RTKKGPP 128
>gi|298715431|emb|CBJ28042.1| Sm-like protein LSm4 [Ectocarpus siliculosus]
Length = 165
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+G + E NGD + G+L + MN + DV T RD K M +Y+
Sbjct: 2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYV 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGKQG 88
RG+ I+++ +P DM++ + K K+
Sbjct: 62 RGNSIKYVTIPEEVLDMVQEEDLSKEKRA 90
>gi|12834762|dbj|BAB23033.1| unnamed protein product [Mus musculus]
Length = 138
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T DG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSLDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|118790653|ref|XP_318746.3| AGAP009687-PA [Anopheles gambiae str. PEST]
gi|116118049|gb|EAA14138.4| AGAP009687-PA [Anopheles gambiae str. PEST]
Length = 157
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + +V T +DG K M YI
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|402581860|gb|EJW75807.1| small nuclear ribonucleoprotein, partial [Wuchereria bancrofti]
Length = 123
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + D T RDG + M +Y+
Sbjct: 1 MPLSLLRTAQNHPMLVELKNGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYV 60
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 61 RGSTIKYLRIPD 72
>gi|77745469|gb|ABB02633.1| glycine rich protein-like [Solanum tuberosum]
gi|82623401|gb|ABB87115.1| glycine rich protein-like [Solanum tuberosum]
Length = 147
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|297743868|emb|CBI36838.3| unnamed protein product [Vitis vinifera]
Length = 196
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 48 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 107
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 108 RGNTIKYLRVPD 119
>gi|405977571|gb|EKC42014.1| UPF0632 protein A [Crassostrea gigas]
Length = 697
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A H + E NG+ + G LV ++ MN + +V T RDG + M YI
Sbjct: 8 LPLSLLRTAVNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDRFWRMPECYI 67
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK-----QGNKAGAAGRGKSGILRAQAARGRGRGG 114
RGS I++L +P DM+K + K K +G G +L+A R G
Sbjct: 68 RGSTIKYLRIPDEVIDMVKEEVIQKSKGRGEMRGRGGPQRGGRGGRVLKALLCMVRSEAG 127
Query: 115 -PPQRGGRGGWGGPSRGG 131
+ G GG GP+R G
Sbjct: 128 VGDEEVGVGGSRGPARVG 145
>gi|225437330|ref|XP_002264738.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 150
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|242247021|ref|NP_001156271.1| U6 snRNA-associated Sm-like protein [Acyrthosiphon pisum]
gi|239790147|dbj|BAH71652.1| ACYPI008634 [Acyrthosiphon pisum]
Length = 134
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + +V T +DG + + YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVTCDSWMNINLREVICTSKDGDRFWRLPECYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARG 109
RGS I++L +PD +F + + RG++ + +A RG
Sbjct: 62 RGSMIKYLRIPD-----EIFDMVKEDIVVNKARGRTDNQKNRAPRG 102
>gi|72387630|ref|XP_844239.1| small nuclear ribonucleoprotein SmD3 [Trypanosoma brucei TREU927]
gi|62360517|gb|AAX80930.1| small nuclear ribonucleoprotein SmD3, putative [Trypanosoma
brucei]
gi|70800772|gb|AAZ10680.1| small nuclear ribonucleoprotein SmD3, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|261327389|emb|CBH10364.1| small nuclear ribonucleoprotein SmD3, putative [Trypanosoma
brucei gambiense DAL972]
Length = 115
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
G+P+K+L +A G ++ E NG+L+ G L E DNM + T G+ M + +
Sbjct: 5 GLPLKVLSDAVGTTVSLELKNGELYTGTLSEVVDNMGVLLTSARKTTMAGREVDMPKVLV 64
Query: 64 RGSKIRFLILPDMLKNAP 81
G+ I F LPD L+ P
Sbjct: 65 CGTNIVFFQLPDALRCCP 82
>gi|330798959|ref|XP_003287516.1| hypothetical protein DICPUDRAFT_47407 [Dictyostelium purpureum]
gi|325082462|gb|EGC35943.1| hypothetical protein DICPUDRAFT_47407 [Dictyostelium purpureum]
Length = 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL +GH I E NG+ + G L+ ++ MN + +V T +D K + + YI
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGYLINCDNWMNINLRNVIRTSKDSDKFWKIQSCYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRG 113
RG+ I+++ +PD + + + + +Q ++ +G + RGRGRG
Sbjct: 62 RGNTIKYISVPDEIIDL-VVEEEQISRPHNLSKGDN-----TTGRGRGRG 105
>gi|390362890|ref|XP_003730251.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Strongylocentrotus purpuratus]
Length = 151
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG + M YI
Sbjct: 29 LPLSLLRTAQNHPMLVELKNGETYNGHLVACDNWMNINLREVICTSRDGDRFWRMPECYI 88
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 89 RGSTIKYLRIPD 100
>gi|323452593|gb|EGB08466.1| hypothetical protein AURANDRAFT_25994 [Aureococcus
anophagefferens]
Length = 139
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+G + E NGD + G+LV A+ MN + +V T RDG + + YI
Sbjct: 2 LPLSLLTTAKGQPMLIELKNGDTYNGRLVSADTWMNVNLEEVICTSRDGDRFWKLKECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNSIKYLRIPD 73
>gi|225450786|ref|XP_002283804.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 149
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|255564128|ref|XP_002523061.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
gi|223537623|gb|EEF39246.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
Length = 147
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|296089694|emb|CBI39513.3| unnamed protein product [Vitis vinifera]
Length = 162
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 15 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 74
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 75 RGNTIKYLRVPD 86
>gi|12230329|sp|Q9ZRU9.1|LSM4_FAGSY RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 2
gi|3927916|emb|CAA10233.1| glycine-rich protein 2 [Fagus sylvatica]
Length = 148
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E +G+ + G LV + MN + +V T +DG + M + YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|297812937|ref|XP_002874352.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
gi|297320189|gb|EFH50611.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|430813206|emb|CCJ29431.1| unnamed protein product [Pneumocystis jirovecii]
Length = 639
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 11 HEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIR 69
A+G+ + E NG+ + G +V + MN + +V T DG + ++ YIRGS I+
Sbjct: 517 TAAQGYPMLVELKNGETYNGHMVSCDTWMNLILKEVIQTNADGDRFFRLSECYIRGSTIK 576
Query: 70 FLILPDMLKNAPMFKGKQGNKAGAAGRGKS-GILRAQAARGR------GRGGPPQRGGRG 122
+L +PD + N + +Q N+ + RG S G RGR GRGG GRG
Sbjct: 577 YLRIPDEIINIVKLQNEQ-NRDNRSQRGISRGGRGINLGRGRGMQNIQGRGGRTSDRGRG 635
Query: 123 GWGG 126
GG
Sbjct: 636 RIGG 639
>gi|390335655|ref|XP_783129.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Strongylocentrotus purpuratus]
Length = 161
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG + M YI
Sbjct: 29 LPLSLLRTAQNHPMLVELKNGETYNGHLVACDNWMNINLREVICTSRDGDRFWRMPECYI 88
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 89 RGSTIKYLRIPD 100
>gi|356572732|ref|XP_003554520.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 148
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|224064436|ref|XP_002301475.1| predicted protein [Populus trichocarpa]
gi|222843201|gb|EEE80748.1| predicted protein [Populus trichocarpa]
Length = 150
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|414876858|tpg|DAA53989.1| TPA: hypothetical protein ZEAMMB73_426325, partial [Zea mays]
Length = 112
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG K M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|156395605|ref|XP_001637201.1| predicted protein [Nematostella vectensis]
gi|156224311|gb|EDO45138.1| predicted protein [Nematostella vectensis]
Length = 137
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + +V T RDG K + Y+
Sbjct: 3 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDTWMNINLREVICTSRDGDKFWKIPECYV 62
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 63 RGSNIKYLRIPD 74
>gi|356500280|ref|XP_003518961.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 149
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|255629165|gb|ACU14927.1| unknown [Glycine max]
Length = 148
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|195655461|gb|ACG47198.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG K M Y
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYX 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|301108303|ref|XP_002903233.1| U6 snRNA-associated Sm-like protein [Phytophthora infestans
T30-4]
gi|262097605|gb|EEY55657.1| U6 snRNA-associated Sm-like protein [Phytophthora infestans
T30-4]
Length = 82
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NGD + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I+++ +P+
Sbjct: 62 RGNTIKYIRVPN 73
>gi|15241028|ref|NP_198124.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
gi|332006335|gb|AED93718.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
Length = 129
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|21593495|gb|AAM65462.1| glycine rich protein-like [Arabidopsis thaliana]
Length = 129
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|147768838|emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
Length = 3804
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 3656 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 3715
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGR-GRGGPPQRG-GR 121
RG+ I++L +PD + Q A R G+ R + G G P +G GR
Sbjct: 3716 RGNTIKYLRVPD-----EVIDKVQEETKNRADRKPPGVGRGRGRGREDGSSGRPAKGIGR 3770
Query: 122 G 122
G
Sbjct: 3771 G 3771
>gi|452819748|gb|EME26801.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Galdieria
sulphuraria]
Length = 110
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+G + E +GD + G LV + MN + +V T R+G + +A IY+
Sbjct: 3 LPLSLLKAAQGQPVLVELKSGDTYNGHLVNIDSWMNLNLREVVWTSREGDRFWKIAEIYV 62
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAA 94
RG+ +++L +P+ + + + Q ++
Sbjct: 63 RGNTVKYLRVPEEIVDTLTDQQSQTTDKSSS 93
>gi|198436639|ref|XP_002128141.1| PREDICTED: similar to GL19160 isoform 1 [Ciona intestinalis]
Length = 127
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A H + E NG+ + G LV ++ MN + +V T RDG M YI
Sbjct: 2 LPLSLLKTAVNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDHFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFK 84
RGS I++L +P DM+K M K
Sbjct: 62 RGSTIKYLRIPDEVIDMVKEDSMSK 86
>gi|357519603|ref|XP_003630090.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355524112|gb|AET04566.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 161
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPDMLKN 79
RG+ I++L +PD + N
Sbjct: 62 RGNTIKYLRVPDEVCN 77
>gi|295674033|ref|XP_002797562.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280212|gb|EEH35778.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 124
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVVQTTPEGDRFFRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKS 99
RG+ I++L +P+ + + + K +Q N+ GRG
Sbjct: 62 RGNNIKYLRVPEEIVD--LAKDQQQNQPSNRGRGSQ 95
>gi|296415636|ref|XP_002837492.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633364|emb|CAZ81683.1| unnamed protein product [Tuber melanosporum]
Length = 249
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV + MN + +V T +G K +A Y+
Sbjct: 117 LPLSLLNTAQGHPMLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDKFFRLAECYV 176
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 177 RGNNIKYLRVPD 188
>gi|71747374|ref|XP_822742.1| small nuclear ribonucleoprotein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70832410|gb|EAN77914.1| small nuclear ribonucleoprotein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 131
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNM-NCAMADVTVTFRDGKVKPMANIYI 63
IP++ + EA G ++ ETT+G ++ GKL++ + + + DV RD + +++
Sbjct: 7 IPLRAICEATGFLVKVETTDGSVYDGKLMQLDAICGDIELIDVRCQHRDSSLSVEGRVFL 66
Query: 64 RGSKIRFLILPDMLKNAPMFKGK 86
+GS +R + LP LK AP K
Sbjct: 67 KGSSVRLVHLPSDLKRAPFLDWK 89
>gi|301108373|ref|XP_002903268.1| U6 snRNA-associated Sm-like protein LSm4, putative [Phytophthora
infestans T30-4]
gi|262097640|gb|EEY55692.1| U6 snRNA-associated Sm-like protein LSm4, putative [Phytophthora
infestans T30-4]
Length = 79
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NGD + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I+++ +P+
Sbjct: 62 RGNTIKYIRVPN 73
>gi|348673931|gb|EGZ13750.1| hypothetical protein PHYSODRAFT_347058 [Phytophthora sojae]
Length = 153
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIY 62
+P+ LL A+GH + E NGD + G LV + MN + +V T +DG + M Y
Sbjct: 3 SLPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECY 62
Query: 63 IRGSKIRFLILPD 75
IRG+ I+++ +P+
Sbjct: 63 IRGNTIKYIRVPN 75
>gi|294866382|ref|XP_002764688.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
gi|239864378|gb|EEQ97405.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
Length = 349
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+G I E NG+ + G L + MN + D +T +DG + +A YI
Sbjct: 3 LPMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYI 62
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 63 RGNHIKYLRIPD 74
>gi|225684632|gb|EEH22916.1| U6 snRNP-associated protein Lsm4 [Paracoccidioides brasiliensis
Pb03]
gi|226286829|gb|EEH42342.1| small nuclear ribonucleoprotein [Paracoccidioides brasiliensis
Pb18]
Length = 124
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVVQTTPEGDRFFRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKS 99
RG+ I++L +P+ + + K +Q N+ GRG
Sbjct: 62 RGNNIKYLRVPEEI--VDIAKDQQQNQPSNRGRGSQ 95
>gi|294463283|gb|ADE77177.1| unknown [Picea sitchensis]
Length = 146
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLRTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|391339536|ref|XP_003744104.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Metaseiulus occidentalis]
Length = 116
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T R+G K + YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSREGDKFWRIPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ IRFL +PD
Sbjct: 62 RGNTIRFLRIPD 73
>gi|168013104|ref|XP_001759241.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689554|gb|EDQ75925.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 181
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|261332520|emb|CBH15515.1| small nuclear ribonucleoprotein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 131
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNM-NCAMADVTVTFRDGKVKPMANIYI 63
IP++ + EA G ++ ETT+G ++ GKL++ + + + DV RD + +++
Sbjct: 7 IPLRAICEATGFLVKVETTDGSVYDGKLMQLDAICGDIELIDVRCQHRDSSLSVEGRVFL 66
Query: 64 RGSKIRFLILPDMLKNAPMF 83
+GS +R + LP LK AP
Sbjct: 67 KGSSVRLVHLPSDLKRAPFL 86
>gi|357442545|ref|XP_003591550.1| Small nuclear ribonucleoprotein sm [Medicago truncatula]
gi|355480598|gb|AES61801.1| Small nuclear ribonucleoprotein sm [Medicago truncatula]
Length = 106
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
P+ LL A+GH + E NG+ + G LV + MN + +V T DG + M YI
Sbjct: 2 FPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVFCTSNDGDRFWYMPKCYI 61
Query: 64 RGSKIRFLILPDML 77
RG+ I++L LP L
Sbjct: 62 RGNTIKYLRLPPSL 75
>gi|391338956|ref|XP_003743819.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Metaseiulus occidentalis]
Length = 116
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T R+G K + Y+
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSREGDKFWRIPECYV 61
Query: 64 RGSKIRFLILPD 75
RG+ IRFL +PD
Sbjct: 62 RGNTIRFLRIPD 73
>gi|384489888|gb|EIE81110.1| hypothetical protein RO3G_05815 [Rhizopus delemar RA 99-880]
Length = 129
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LLH A GH + E +G+ F G LV ++ MN + +V T +G K + YI
Sbjct: 2 LPLSLLHTAAGHPMLVELKSGETFNGHLVNCDNWMNLTLREVIQTSPEGDKFWRLPECYI 61
Query: 64 RGSKIRFLILP----DMLK 78
RG+ I++L +P DM+K
Sbjct: 62 RGNTIKYLNVPEEIVDMVK 80
>gi|219124066|ref|XP_002182333.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406294|gb|EEC46234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 135
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGK-VKPMANIYI 63
+P+ LL A G I E GD + G++V + MN + DV T DG+ + + YI
Sbjct: 2 LPLTLLRAANGSPILVELKGGDTYNGRVVNCDTFMNMNLQDVICTSADGEHFSKLPSCYI 61
Query: 64 RGSKIRFLILPDML 77
RGS I++L LP L
Sbjct: 62 RGSSIKYLRLPPSL 75
>gi|340376985|ref|XP_003387011.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like
[Amphimedon queenslandica]
Length = 125
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANI 61
+ +P+ LL A+ + + E NG+ + G LV ++ MN + +V T RDG + M
Sbjct: 2 VSLPLSLLKAAQDNPMLVELKNGETYNGHLVSCDNWMNIQLKEVICTSRDGDRFWKMPEC 61
Query: 62 YIRGSKIRFLILPD 75
+IRGS I++L +PD
Sbjct: 62 FIRGSMIKYLRIPD 75
>gi|20260282|gb|AAM13039.1| unknown protein [Arabidopsis thaliana]
gi|22136528|gb|AAM91342.1| unknown protein [Arabidopsis thaliana]
Length = 129
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ L A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLFKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|313241313|emb|CBY33589.1| unnamed protein product [Oikopleura dioica]
Length = 141
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A H + E NG+ + G LV ++ MN + +V T RDG M Y+
Sbjct: 2 LPLSLLKTAVNHPMLVELKNGETYNGHLVNCDNWMNLQLREVICTSRDGDHFWRMNECYV 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|313236950|emb|CBY12197.1| unnamed protein product [Oikopleura dioica]
Length = 141
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A H + E NG+ + G LV ++ MN + +V T RDG M Y+
Sbjct: 2 LPLSLLKTAVNHPMLVELKNGETYNGHLVNCDNWMNLQLREVICTSRDGDHFWRMNECYV 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|452819749|gb|EME26802.1| U6 snRNA-associated Sm-like protein LSm4 isoform 2 [Galdieria
sulphuraria]
Length = 127
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+G + E +GD + G LV + MN + +V T R+G + +A IY+
Sbjct: 3 LPLSLLKAAQGQPVLVELKSGDTYNGHLVNIDSWMNLNLREVVWTSREGDRFWKIAEIYV 62
Query: 64 RGSKIRFLILPD 75
RG+ +++L +P+
Sbjct: 63 RGNTVKYLRVPE 74
>gi|449443839|ref|XP_004139683.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 88
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|315051216|ref|XP_003174982.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
gi|311340297|gb|EFQ99499.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
Length = 124
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV ++ MN + +V T +G + + +Y+
Sbjct: 5 LPLGLLNAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYV 64
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RG+ I++L +P+ + + + +Q N+ RG
Sbjct: 65 RGNNIKYLRVPEEV--VDLARDQQQNQQSGRSRG 96
>gi|294932805|ref|XP_002780450.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239890384|gb|EER12245.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 126
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+G I E NG+ + G L + MN + D +T +DG + +A YI
Sbjct: 3 LPMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYI 62
Query: 64 RGSKIRFLILPD 75
RG+ +++L +PD
Sbjct: 63 RGNHVKYLRIPD 74
>gi|56757161|gb|AAW26752.1| SJCHGC06377 protein [Schistosoma japonicum]
gi|226490214|emb|CAX69349.1| putative U6 snRNA-associated Sm-like protein LSm4 [Schistosoma
japonicum]
Length = 128
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPDMLKN 79
E +G+ + G LV +D MN + +V T RDG + M YIRGS I++L +PD + +
Sbjct: 4 ELKSGETYNGHLVACDDWMNIHLKEVICTSRDGDRFWKMPECYIRGSIIKYLRIPDDVID 63
Query: 80 ---APMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGG 114
+ K N++ +A G+ G R +A +GRGG
Sbjct: 64 KVKEDLQLAKMRNRSQSADTGRGGFHRNKA---KGRGG 98
>gi|281201415|gb|EFA75627.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 157
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL +GH I E NG+ F G LV ++ MN + +V T +D K + + YI
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETFNGYLVNCDNWMNINLKNVIRTSKDSDKFWKLQSCYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I+++ +PD
Sbjct: 62 RGNTIKYISVPD 73
>gi|396476736|ref|XP_003840106.1| predicted protein [Leptosphaeria maculans JN3]
gi|312216677|emb|CBX96627.1| predicted protein [Leptosphaeria maculans JN3]
Length = 54
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 30/33 (90%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVE 34
+IGIPIKLL+EA GHI+T E T+G+++RGKL+E
Sbjct: 4 TIGIPIKLLNEAAGHIVTLEITSGEVYRGKLIE 36
>gi|224131146|ref|XP_002321012.1| predicted protein [Populus trichocarpa]
gi|222861785|gb|EEE99327.1| predicted protein [Populus trichocarpa]
Length = 151
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRTPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|255712429|ref|XP_002552497.1| KLTH0C06248p [Lachancea thermotolerans]
gi|238933876|emb|CAR22059.1| KLTH0C06248p [Lachancea thermotolerans CBS 6340]
Length = 175
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIR 64
+P+ LL A+G + E NG+ G+L ++ MN + DVT T VK ++ IY+R
Sbjct: 2 LPLYLLTNAKGQQLVIELKNGETIVGQLTNVDNWMNLTLTDVTHTSASDTVK-LSEIYVR 60
Query: 65 GSKIRFLILPD 75
G+ I+++ L D
Sbjct: 61 GNFIKYIKLQD 71
>gi|225563373|gb|EEH11652.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus G186AR]
Length = 124
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVVQTSPEGDRFFRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RG+ I++L +P+ + + K +Q N++ RG
Sbjct: 62 RGNNIKYLRVPEEV--VDLAKDQQQNQSSNRTRG 93
>gi|154281997|ref|XP_001541811.1| hypothetical protein HCAG_03909 [Ajellomyces capsulatus NAm1]
gi|150411990|gb|EDN07378.1| hypothetical protein HCAG_03909 [Ajellomyces capsulatus NAm1]
Length = 124
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVVQTSPEGDRFFRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RG+ I++L +P+ + + K +Q N++ RG
Sbjct: 62 RGNNIKYLRVPEEV--VDLAKDQQQNQSSNRTRG 93
>gi|17533617|ref|NP_495514.1| Protein LSM-4 [Caenorhabditis elegans]
gi|12230257|sp|Q19952.1|LSM4_CAEEL RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|351065126|emb|CCD66279.1| Protein LSM-4 [Caenorhabditis elegans]
Length = 123
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G L + MN + DV T +DG K M+ Y+
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYV 62
Query: 64 RGSKIRFLILPD 75
RGS I++L +P+
Sbjct: 63 RGSTIKYLRIPE 74
>gi|452986281|gb|EME86037.1| hypothetical protein MYCFIDRAFT_130274, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 126
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LLH A+GH + E G+ G LV + MN + +V T +G K +A Y+
Sbjct: 2 LPLGLLHAAQGHPMLVELKTGETLNGHLVSCDTYMNLTLKEVVQTSPEGDKFFRLAECYV 61
Query: 64 RGSKIRFLILPDMLKNA 80
RG+ I++L +PD + +A
Sbjct: 62 RGNNIKYLRVPDEVVDA 78
>gi|302681117|ref|XP_003030240.1| hypothetical protein SCHCODRAFT_57519 [Schizophyllum commune
H4-8]
gi|300103931|gb|EFI95337.1| hypothetical protein SCHCODRAFT_57519 [Schizophyllum commune
H4-8]
Length = 129
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ + E NG+ F G LV ++ MN + +V T DG K + YI
Sbjct: 2 LPLSLLTAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTNADGDKFWKLKECYI 61
Query: 64 RGSKIRFLILPDML 77
RGS I++L +PD L
Sbjct: 62 RGSTIKYLRIPDEL 75
>gi|240275971|gb|EER39484.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325093332|gb|EGC46642.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H88]
Length = 124
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLAAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVVQTSPEGDRFFRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RG+ I++L +P+ + + K +Q N++ RG
Sbjct: 62 RGNNIKYLRVPEEV--VDLAKDQQQNQSSNRTRG 93
>gi|238496529|ref|XP_002379500.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|220694380|gb|EED50724.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|391868822|gb|EIT78031.1| small nuclear ribonucleoprotein [Aspergillus oryzae 3.042]
Length = 121
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G L ++ MN + +V T +G + + +YI
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RG+ I++L +P+ + M K +Q N+ RG
Sbjct: 62 RGNNIKYLRIPEEI--IEMVKEQQQNQPSNRNRG 93
>gi|340960256|gb|EGS21437.1| hypothetical protein CTHT_0032950 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 769
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV+ + MN + +V T +G K + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLREVVQTSPEGDKFMRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAG 95
+G+ I++L +PD + + + +Q ++ G
Sbjct: 62 KGNNIKYLRVPDEIIDIVKEQQQQQHRGAVVG 93
>gi|154337565|ref|XP_001565015.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062054|emb|CAM45146.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 103
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I L G ++ E N + G++ + NMN M+ V +T + + +RGS
Sbjct: 14 ITFLQHLRGTLVEIELKNASIVSGEIAYVDANMNTYMSHVKITSKGKNPVEVEEYMVRGS 73
Query: 67 KIRFLILPDMLKNAPMFKGKQGNKAGAAGR 96
IR++ILP+ L + K K GAA +
Sbjct: 74 TIRYIILPESLNTYDVLKQASAKKNGAAKK 103
>gi|340383285|ref|XP_003390148.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like, partial
[Amphimedon queenslandica]
Length = 93
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANI 61
+ +P+ LL A+ + + E NG+ + G LV ++ MN + +V T RDG + M
Sbjct: 2 VSLPLSLLKAAQDNPMLVELKNGETYNGHLVSCDNWMNIQLKEVICTSRDGERFWKMPEC 61
Query: 62 YIRGSKIRFLILPD 75
+IRGS ++L +PD
Sbjct: 62 FIRGSMTKYLRIPD 75
>gi|327349106|gb|EGE77963.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ATCC
18188]
Length = 167
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANI 61
I +P+ LL A+GH + E NG+ G LV ++ MN + +V T +G + + +
Sbjct: 43 IQLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILREVVQTSPEGDRFFRLPEM 102
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
Y+RG+ I++L +P+ + + + K +Q N+ RG
Sbjct: 103 YVRGNNIKYLRVPEEVVD--LAKDQQQNQPSNRARG 136
>gi|195995525|ref|XP_002107631.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190588407|gb|EDV28429.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 96
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T +DG + M Y+
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVNCDNFMNINLREVICTSKDGDRFWKMPECYL 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNMIKYLRIPD 73
>gi|154311062|ref|XP_001554861.1| hypothetical protein BC1G_06649 [Botryotinia fuckeliana B05.10]
Length = 690
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E +G+ G LV + MN + +V T DG K + IY+
Sbjct: 3 LPLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYV 62
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 63 KGNNIKYLRMPD 74
>gi|401419814|ref|XP_003874396.1| putative small nuclear ribonucleaoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490632|emb|CBZ25894.1| putative small nuclear ribonucleaoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 141
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNM-NCAMADVTVTFRDGKVKPMANIY 62
IP L+ EA +T ET +GDL++G L + + N + DV +D +
Sbjct: 10 DIPSSLVFEALNSRVTVETVDGDLYKGTLAAFDVSRGNIELVDVRHQAKDSTYGFYERVT 69
Query: 63 IRGSKIRFLILPDMLKNAPMFKGKQGN 89
+RGSKIR ++LP +K AP + ++ +
Sbjct: 70 VRGSKIRIVLLPPEMKAAPSLQWRRDS 96
>gi|326470583|gb|EGD94592.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
gi|326484638|gb|EGE08648.1| small nuclear ribonucleoprotein [Trichophyton equinum CBS 127.97]
Length = 121
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RG+ I++L +P+ + + + +Q N+ RG
Sbjct: 62 RGNNIKYLRVPEEV--VDLARDQQQNQQSGRNRG 93
>gi|341899817|gb|EGT55752.1| CBN-LSM-4 protein [Caenorhabditis brenneri]
Length = 123
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G L + MN + DV T +DG K M+ Y+
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEAYV 62
Query: 64 RGSKIRFLILPD 75
RGS I++L +P+
Sbjct: 63 RGSTIKYLRIPE 74
>gi|320035592|gb|EFW17533.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392868800|gb|EAS34594.2| small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 125
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ ++GH + E NG+ G LV + MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLNASQGHPMLVELKNGETLNGHLVNCDSWMNLTLKEVVQTSPEGDRFFRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RG+ I+FL +P+ + +Q N+ GRG
Sbjct: 62 RGNNIKFLRVPEEVVEIAR-DQQQQNQPSTRGRG 94
>gi|268562665|ref|XP_002646730.1| C. briggsae CBR-LSM-4 protein [Caenorhabditis briggsae]
Length = 124
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G L + MN + DV T +DG K M+ Y+
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEAYV 62
Query: 64 RGSKIRFLILPD 75
RGS I++L +P+
Sbjct: 63 RGSTIKYLRIPE 74
>gi|308503320|ref|XP_003113844.1| CRE-LSM-4 protein [Caenorhabditis remanei]
gi|308263803|gb|EFP07756.1| CRE-LSM-4 protein [Caenorhabditis remanei]
Length = 123
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G L + MN + DV T +DG K M+ Y+
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEAYV 62
Query: 64 RGSKIRFLILPD 75
RGS I++L +P+
Sbjct: 63 RGSTIKYLRIPE 74
>gi|326432761|gb|EGD78331.1| hypothetical protein PTSG_09397 [Salpingoeca sp. ATCC 50818]
Length = 115
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ L+ A H + E NG+ + G LV + MN + VT+T +DG + + YI
Sbjct: 2 LPLSLIRAAVNHPMLVELKNGESYNGHLVNCDHYMNIILRGVTLTSKDGDRFWKLKECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++L LPD
Sbjct: 62 RGSTIKYLRLPD 73
>gi|344230315|gb|EGV62200.1| Sm-like ribonucleo protein [Candida tenuis ATCC 10573]
Length = 140
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKV-KPMANIYI 63
+P+ LL+ A+ I E NG+ G L + MN +++V T + +V + IYI
Sbjct: 2 LPLYLLNSAKSQPILVELKNGETLNGLLTNCDSWMNLTLSEVIQTSPNAEVFTKIPEIYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGKQGNK 90
RGS I++L LP D K M +Q NK
Sbjct: 62 RGSHIKYLRLPEQTMDYAKEQNMINMEQRNK 92
>gi|303315215|ref|XP_003067615.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240107285|gb|EER25470.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 144
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ ++GH + E NG+ G LV + MN + +V T +G + + +Y+
Sbjct: 21 LPLGLLNASQGHPMLVELKNGETLNGHLVNCDSWMNLTLKEVVQTSPEGDRFFRLPEVYV 80
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RG+ I+FL +P+ + +Q N+ GRG
Sbjct: 81 RGNNIKFLRVPEEVVEIAR-DQQQQNQPSTRGRG 113
>gi|299750975|ref|XP_001829959.2| U6 snRNA-associated Sm-like protein LSm4 [Coprinopsis cinerea
okayama7#130]
gi|298409160|gb|EAU91881.2| U6 snRNA-associated Sm-like protein LSm4 [Coprinopsis cinerea
okayama7#130]
Length = 129
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG+ F G LV ++ MN + +V T +G + + YI
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRFWKLKECYI 61
Query: 64 RGSKIRFLILPDMLKNA 80
RGS I++L +PD L +A
Sbjct: 62 RGSTIKYLRVPDQLLDA 78
>gi|302881905|ref|XP_003039863.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
gi|256720730|gb|EEU34150.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
Length = 125
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV + MN + +V T +G K + +Y+
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLREVVQTSPEGDKFVRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKN--APMFKGKQGN 89
+G+ I++L +PD + + + +G+QGN
Sbjct: 62 KGNNIKYLRVPDEIIDQVSESQRGQQGN 89
>gi|242007513|ref|XP_002424584.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212508027|gb|EEB11846.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 126
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILP----D 75
E NG+ + G LV ++ MN + +V T RDG K M YIRGS I+++ +P D
Sbjct: 4 ELKNGETYNGHLVSCDNWMNIILREVICTSRDGDKFWRMPECYIRGSTIKYVRIPDEVID 63
Query: 76 MLKNAPMFK----GKQGNKAGAAGRGKSGILRAQAARGRGRGG 114
M+K + K G+ N++ + RG G R Q GRG+
Sbjct: 64 MVKEEAVLKSRGRGELKNRSNSNQRGGRGTGRNQFG-GRGKSS 105
>gi|294881583|ref|XP_002769420.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239872829|gb|EER02138.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 137
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+G I E NG+ + G L + MN + D +T +DG + +A YI
Sbjct: 3 LPMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYI 62
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 63 RGNHIKYLRIPD 74
>gi|146103398|ref|XP_001469552.1| putative small nuclear ribonucleaoprotein [Leishmania infantum
JPCM5]
gi|134073922|emb|CAM72661.1| putative small nuclear ribonucleaoprotein [Leishmania infantum
JPCM5]
Length = 141
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNM-NCAMADVTVTFRDGKVKPMANIY 62
IP L+ EA +T ET GDL++G L + + N + DV +D +
Sbjct: 10 DIPSSLVFEALHSRVTVETVEGDLYKGTLAAFDVSRGNIELVDVRHHAKDSSFGFYERVT 69
Query: 63 IRGSKIRFLILPDMLKNAPMFKGKQGN 89
+RGSKIR ++LP +K AP + ++ +
Sbjct: 70 VRGSKIRIILLPSEMKAAPSLQWRRES 96
>gi|402079351|gb|EJT74616.1| glycine rich protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 141
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV + MN M +V T +G K + IY+
Sbjct: 2 LPLGLLNAAQGHAMMVELKNGETLNGHLVMCDTWMNLTMKEVVQTSPEGDKFMRLPEIYV 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|45200801|ref|NP_986371.1| AGL296Wp [Ashbya gossypii ATCC 10895]
gi|44985499|gb|AAS54195.1| AGL296Wp [Ashbya gossypii ATCC 10895]
gi|374109616|gb|AEY98521.1| FAGL296Wp [Ashbya gossypii FDAG1]
Length = 168
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIR 64
+P+ LL A+G + E NG+ G+LV ++ MN + V D ++ + IY+R
Sbjct: 2 LPLYLLTNAKGQKLFIELKNGETIEGELVNVDNWMNLTLQSVVHAGSDQTLQ-LPEIYVR 60
Query: 65 GSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAAR 108
GS I+++ L D + + K KQ +G G G +G R + R
Sbjct: 61 GSFIKYIRLQDDI----IEKVKQQLNSGKDGSGSNGQQRDRDGR 100
>gi|345560998|gb|EGX44114.1| hypothetical protein AOL_s00210g95 [Arthrobotrys oligospora ATCC
24927]
Length = 145
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKV-KPMANIYI 63
+P+ LL +GH + E NG+ G LV + MN + +V T DG+ + Y+
Sbjct: 2 LPLTLLTTVQGHPLLVELKNGETLNGHLVSCDTWMNLTLKEVIQTSPDGETFHRLPEAYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGA 93
RG+ I++L +PD + + + K +Q +A +
Sbjct: 62 RGNNIKYLRVPDEIID--IVKEQQAQQAAS 89
>gi|409044160|gb|EKM53642.1| hypothetical protein PHACADRAFT_260106 [Phanerochaete carnosa
HHB-10118-sp]
Length = 130
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG+ F G LV ++ MN + +V T +G K + YI
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDKFWKLKECYI 61
Query: 64 RGSKIRFLILPDML 77
RGS I++L +PD L
Sbjct: 62 RGSTIKYLRVPDQL 75
>gi|261195536|ref|XP_002624172.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239588044|gb|EEQ70687.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239610465|gb|EEQ87452.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
Length = 124
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILREVVQTSPEGDRFFRLPEMYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RG+ I++L +P+ + + K +Q N+ RG
Sbjct: 62 RGNNIKYLRVPEEV--VDLAKDQQQNQPSNRARG 93
>gi|392591224|gb|EIW80552.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 127
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ + E NG+ F G LV ++ MN + +V T DG + + YI
Sbjct: 2 LPLSLLSAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADGDRFWKLKECYI 61
Query: 64 RGSKIRFLILPDML 77
RGS I++L +PD L
Sbjct: 62 RGSTIKYLRVPDQL 75
>gi|145347482|ref|XP_001418193.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578422|gb|ABO96486.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 115
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL + GH + E NG+ + G L + MN + +V T +DG + MA Y+
Sbjct: 2 LPLTLLKTSCGHPMLVELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMAECYV 61
Query: 64 RGSKIRFLILPD 75
RG+ I+++ +PD
Sbjct: 62 RGNTIKYVCVPD 73
>gi|302831786|ref|XP_002947458.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
gi|300267322|gb|EFJ51506.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
Length = 140
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G L + + MN +++V T +DG + M YI
Sbjct: 2 LPLSLLKTAQRHAVLVELKNGETYNGYLQQCDTWMNLHLSEVICTSKDGQRFFKMPEAYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I+++ +P+
Sbjct: 62 RGNTIKYISVPE 73
>gi|58265314|ref|XP_569813.1| glycine rich protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57226045|gb|AAW42506.1| glycine rich protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 117
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+G + E NG F G LVE + MN + +V T DG + M ++I
Sbjct: 2 LPLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFI 61
Query: 64 RGSKIRFLILPD-MLKNAPMFKGKQGNKAGAAGRGKSG 100
+G+ I++ + D +L+ A ++ +KA AA R + G
Sbjct: 62 KGNIIKYFRIADNILEQA----AEEQDKARAANRARGG 95
>gi|307107546|gb|EFN55788.1| hypothetical protein CHLNCDRAFT_22901 [Chlorella variabilis]
Length = 132
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A H + E NG+ + G +V+ + MN + +V T +DG + M YI
Sbjct: 2 LPLVLLKTAAAHPVLIELKNGETYNGHMVQCDTWMNIHLREVICTSKDGDRFWRMPEAYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|328876176|gb|EGG24539.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 162
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL +GH I E NG+ + G LV ++ MN M V T +D K + YI
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGILVNCDNWMNINMRTVIRTSKDSDKFWKLQGCYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I+++ +PD
Sbjct: 62 RGNTIKYITVPD 73
>gi|336372413|gb|EGO00752.1| hypothetical protein SERLA73DRAFT_121184 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385171|gb|EGO26318.1| hypothetical protein SERLADRAFT_367910 [Serpula lacrymans var.
lacrymans S7.9]
Length = 115
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG+ F G LV ++ MN + +V T +G + + YI
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRFWKLRECYI 61
Query: 64 RGSKIRFLILPDMLKNA 80
RGS I++L +PD L +A
Sbjct: 62 RGSTIKYLRVPDTLLDA 78
>gi|398024024|ref|XP_003865173.1| small nuclear ribonucleaoprotein, putative [Leishmania donovani]
gi|322503410|emb|CBZ38495.1| small nuclear ribonucleaoprotein, putative [Leishmania donovani]
Length = 141
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNM-NCAMADVTVTFRDGKVKPMANIY 62
IP L+ EA +T ET GDL++G L + + N + DV +D +
Sbjct: 10 DIPSSLVFEALHSRVTVETVEGDLYKGTLAAFDVSRGNIELVDVRHHAKDSSFGFYERVT 69
Query: 63 IRGSKIRFLILPDMLKNAPMFKGKQGN 89
+RGSKIR ++LP +K AP + ++ +
Sbjct: 70 VRGSKIRIILLPPEMKAAPSLQWRRES 96
>gi|47028321|gb|AAT09093.1| U6 snRNA-associated Sm like protein [Bigelowiella natans]
Length = 119
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A GH + E NG+ + G LV ++ MN + V T RDG + M YI
Sbjct: 2 LPLSLLRTAVGHPMLVELRNGETYNGHLVSCDNWMNLLIRGVICTSRDGERFWQMDECYI 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNTIKYLRIPD 73
>gi|145490317|ref|XP_001431159.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398262|emb|CAK63761.1| unnamed protein product [Paramecium tetraurelia]
Length = 75
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 51 RDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGKQGN 89
RDG+ + +Y+RGS+IRF+++PD+ K APMFK + N
Sbjct: 4 RDGRPMSLEQVYLRGSQIRFVVIPDVFKYAPMFKKIRAN 42
>gi|209875591|ref|XP_002139238.1| small nuclear ribonucleoprotein Sm D1 [Cryptosporidium muris RN66]
gi|209554844|gb|EEA04889.1| small nuclear ribonucleoprotein Sm D1, putative [Cryptosporidium
muris RN66]
Length = 114
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + + + E NG + +G +V + MN + +V ++ + + + +RGS
Sbjct: 4 VRFLMKLVNNSVVIELKNGTIVQGTIVNVDMAMNTYLKNVKMSVKQRNPISLLQLTVRGS 63
Query: 67 KIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGP 115
IR+ ILPD L P+ + I+ ++ RGRG GGP
Sbjct: 64 TIRYFILPDSL---PLDTLLIDDTPKQKPPKVKPIVTSKIGRGRGLGGP 109
>gi|403174347|ref|XP_003333333.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170935|gb|EFP88914.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 248
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LLH A+G + E NG+ F G L++ ++ MN M +V T +G + + YI
Sbjct: 101 LPLALLHGAQGKPMLVELKNGETFNGHLIQCDNFMNLTMREVYQTSANGEQFWKLPECYI 160
Query: 64 RGSKIRFLILPD 75
RG+ I+++ + D
Sbjct: 161 RGNTIKYIRVTD 172
>gi|384254045|gb|EIE27519.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 117
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G +V+ + MN + +V T +DG + + YI
Sbjct: 2 LPLLLLKTAQKHPVLVELKNGETYNGHMVQCDSWMNVHLREVICTSKDGDRFWRIPETYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|317147119|ref|XP_001821897.2| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae
RIB40]
Length = 123
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIY 62
+P+ LL A+GH + E NG+ G L ++ MN + +V T +G + + +Y
Sbjct: 3 SLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVY 62
Query: 63 IRGSKIRFLILP----DMLKNAPMFKGKQGNKAGAA 94
IRG+ I++L +P +M+K P + N+ G +
Sbjct: 63 IRGNNIKYLRIPEEIIEMVKEQPQNQPSNRNRGGHS 98
>gi|320590330|gb|EFX02773.1| bar domain containing protein [Grosmannia clavigera kw1407]
Length = 1158
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV+ + MN + V T DG + +Y+
Sbjct: 366 LPLGLLSAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLKGVVQTSPDGDSFMRIPEVYV 425
Query: 64 RGSKIRFLILPDMLKNA 80
+G+ I++L +PD + +A
Sbjct: 426 KGNNIKYLRVPDEIIDA 442
>gi|440638708|gb|ELR08627.1| hypothetical protein GMDG_03318 [Geomyces destructans 20631-21]
Length = 124
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV + MN + +V T +G K +A +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDKFFRLAEVYV 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|83769760|dbj|BAE59895.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 133
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G L ++ MN + +V T +G + + +YI
Sbjct: 14 LPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYI 73
Query: 64 RGSKIRFLILP----DMLKNAPMFKGKQGNKAGAA 94
RG+ I++L +P +M+K P + N+ G +
Sbjct: 74 RGNNIKYLRIPEEIIEMVKEQPQNQPSNRNRGGHS 108
>gi|367022520|ref|XP_003660545.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila
ATCC 42464]
gi|347007812|gb|AEO55300.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila
ATCC 42464]
Length = 128
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV+ + MN + +V T +G K + +Y+
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLREVVQTSPEGDKFMRLPEVYV 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|212537193|ref|XP_002148752.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
gi|210068494|gb|EEA22585.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
Length = 170
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV ++ MN + +V T +G + + +Y+
Sbjct: 54 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTTPEGDRFFRLPEVYV 113
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAG 92
RG+ I++L +P+ + + + K +Q N++
Sbjct: 114 RGNNIKYLRVPEEILD--IVKEQQQNQSS 140
>gi|347837957|emb|CCD52529.1| hypothetical protein [Botryotinia fuckeliana]
Length = 122
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E +G+ G LV + MN + +V T DG K + IY+
Sbjct: 3 LPLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYV 62
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 63 KGNNIKYLRMPD 74
>gi|189197851|ref|XP_001935263.1| hypothetical protein PTRG_04930 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187981211|gb|EDU47837.1| hypothetical protein PTRG_04930 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 131
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A GH + E +G+ G LV + MN + +V T DG K + IY+
Sbjct: 2 LPLGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMKLPEIYV 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRVPD 73
>gi|317147121|ref|XP_003189888.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae
RIB40]
Length = 121
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G L ++ MN + +V T +G + + +YI
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGKQGNKAGAA 94
RG+ I++L +P +M+K P + N+ G +
Sbjct: 62 RGNNIKYLRIPEEIIEMVKEQPQNQPSNRNRGGHS 96
>gi|327304028|ref|XP_003236706.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326462048|gb|EGD87501.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 121
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RG+ I++L +P+ + + + +Q ++ RG
Sbjct: 62 RGNNIKYLRVPEEV--VDLARDQQQSQQSGRNRG 93
>gi|425765914|gb|EKV04555.1| U6 snRNA-associated Sm-like protein LSM4, putative [Penicillium
digitatum PHI26]
gi|425779249|gb|EKV17325.1| U6 snRNA-associated Sm-like protein LSM4, putative [Penicillium
digitatum Pd1]
Length = 121
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV ++ MN + +V T +G + + +YI
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVTCDNFMNLILREVVQTSPEGDRFFRLPEVYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKA 91
RG+ I++L +P+ + + K +Q N+A
Sbjct: 62 RGNNIKYLRVPEEI--VEIVKEQQQNQA 87
>gi|354548533|emb|CCE45270.1| hypothetical protein CPAR2_702830 [Candida parapsilosis]
Length = 161
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ I E G+ + G L + MN + DV T DG + +A IYI
Sbjct: 2 LPLYLLTAAKNQPILVELKTGETYNGNLTNCDSWMNLTLHDVIQTNADGDEFAKIAEIYI 61
Query: 64 RGSKIRFLILPDML 77
+G I++L +PD +
Sbjct: 62 KGMHIKYLRIPDQI 75
>gi|340054663|emb|CCC48964.1| putative small nuclear ribonucleoprotein [Trypanosoma vivax Y486]
Length = 100
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY-IRG 65
I L + G ++ E N + G++ E NMN M V +T GK + Y +RG
Sbjct: 10 IGFLQQLRGTLVEIELNNSTVASGEIAFVEPNMNTHMRHVKIT-EKGKNPELVETYMVRG 68
Query: 66 SKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSG 100
SKIR++ILP+ + + K KA AA R KSG
Sbjct: 69 SKIRYVILPEAMNTDDVLK-----KASAA-RSKSG 97
>gi|340517649|gb|EGR47892.1| predicted protein [Trichoderma reesei QM6a]
Length = 152
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV + MN + +V T +G K + +Y+
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYV 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|169606003|ref|XP_001796422.1| hypothetical protein SNOG_06034 [Phaeosphaeria nodorum SN15]
gi|111065978|gb|EAT87098.1| hypothetical protein SNOG_06034 [Phaeosphaeria nodorum SN15]
Length = 187
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 9 LLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSK 67
LL A GH + E +G+ G LV + MN + +V T DG K + IY+RGS
Sbjct: 66 LLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGST 125
Query: 68 IRFLILPDMLKNAPMFKGKQ-GNKAGAAGRG 97
I++L +PD + + + K +Q ++A GRG
Sbjct: 126 IKYLRVPDEIVD--VVKDQQVKDQANRGGRG 154
>gi|146086705|ref|XP_001465619.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|157869411|ref|XP_001683257.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|398015293|ref|XP_003860836.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
gi|68224141|emb|CAJ04478.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|134069718|emb|CAM68043.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|322499059|emb|CBZ34131.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
Length = 103
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
G I L + G ++ E N + G++ + NMN M+ +T + + +
Sbjct: 11 GTLITFLQQLRGTLVEIELKNASIVSGEIAYVDANMNTYMSHAKITSKGKNPVEVEEYMV 70
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGR 96
RGS IR++I+P+ L + K K GA+ +
Sbjct: 71 RGSTIRYIIMPESLNTYDILKQASTKKNGASKK 103
>gi|393239356|gb|EJD46888.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 136
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG+ F G LV ++ MN + +V T +G + + YI
Sbjct: 2 LPLSLLNAAQSKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRFWKLKECYI 61
Query: 64 RGSKIRFLILPDML 77
RGS I++L +PD L
Sbjct: 62 RGSTIKYLRVPDQL 75
>gi|300122633|emb|CBK23201.2| unnamed protein product [Blastocystis hominis]
Length = 152
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A + I E TNG+ + GKLV + MN + D +T + G + ++ YI
Sbjct: 19 LPLSLLRAARDNEILVELTNGETYNGKLVSCDSYMNLVLNDAILTTKTGSRFFHLSECYI 78
Query: 64 RGSKIRFLILP-DMLKNAP 81
RG+ ++ + L D++ N P
Sbjct: 79 RGATVKCIRLSKDVINNVP 97
>gi|342319983|gb|EGU11928.1| RING finger domain-containing protein [Rhodotorula glutinis ATCC
204091]
Length = 885
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSK 67
+ L + +T E NG G + + +MN + V +T R + + + ++ IRG+
Sbjct: 129 RFLMKLNNETVTIELKNGTSVHGTITGVDPSMNTHLKKVKMTVRGREPQALDSLAIRGNN 188
Query: 68 IRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGGRGG 123
+R+ ILPD L + G +S L A RG G PQRG G
Sbjct: 189 VRYFILPDSLPLDTLLIDDAPKPKKKKGEVRSARL---APLRRGGPGSPQRGDVDG 241
>gi|156846025|ref|XP_001645901.1| hypothetical protein Kpol_1045p29 [Vanderwaltozyma polyspora DSM
70294]
gi|156116571|gb|EDO18043.1| hypothetical protein Kpol_1045p29 [Vanderwaltozyma polyspora DSM
70294]
Length = 193
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADV----TVTFRDGKVKP--- 57
+P+ LL A+G IT E NG+ +G L ++ MN ++DV + +G KP
Sbjct: 2 LPLYLLTNAKGQKITIELKNGETIKGVLTNVDNWMNLTLSDVIQYDSDALNNGAEKPEGL 61
Query: 58 -MANIYIRGSKIRFLILPD 75
+ IY+RG+ I+++ L D
Sbjct: 62 SVPEIYLRGTYIKYINLQD 80
>gi|85690979|ref|XP_965889.1| small nuclear ribonucleoprotein [Encephalitozoon cuniculi GB-M1]
gi|19068456|emb|CAD24924.1| SMALL NUCLEAR RIBONUCLEOPROTEIN (U1/U2 snRNP) [Encephalitozoon
cuniculi GB-M1]
gi|449329851|gb|AGE96120.1| small nuclear ribonucleoprotein [Encephalitozoon cuniculi]
Length = 99
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+++L + + + ET G GK+V + MN M DV V DG P + +RGS
Sbjct: 4 VRVLRKCKNERVKIETKEGRRIEGKIVSVDKTMNVEMVDVVV---DG--APASTYTVRGS 58
Query: 67 KIRFLILPDMLKNAPMFKGK------QGNKAGAAGRGKSGI 101
IR+++ D + P+ +G + G A R K+G+
Sbjct: 59 SIRYVLFRDDIDFKPLLVDDRPRNRARGQETGKAKRRKTGV 99
>gi|428180768|gb|EKX49634.1| hypothetical protein GUITHDRAFT_151418 [Guillardia theta
CCMP2712]
Length = 117
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G +V + MN + V +T R+ P+ + IRGS
Sbjct: 4 VRFLMKLNNETVTIELKNGSVVHGTIVGIDMAMNTHLKAVKLTMRNKTPVPLEQLSIRGS 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAGAAGR 96
IR+ +LPD ++++AP K K G KA A G+
Sbjct: 64 NIRYYLLPDNLNLDTLLVEDAP--KHKMG-KASAPGQ 97
>gi|452001361|gb|EMD93821.1| hypothetical protein COCHEDRAFT_1154389 [Cochliobolus
heterostrophus C5]
Length = 134
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A GH + E +G+ G LV + MN + +V T DG K + IY+
Sbjct: 2 LPLGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYV 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRVPD 73
>gi|451849184|gb|EMD62488.1| hypothetical protein COCSADRAFT_221383 [Cochliobolus sativus
ND90Pr]
Length = 141
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A GH + E +G+ G LV + MN + +V T DG K + IY+
Sbjct: 2 LPLGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYV 61
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 62 RGSTIKYLRVPD 73
>gi|126345432|ref|XP_001373339.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like, partial
[Monodelphis domestica]
Length = 124
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILP----D 75
E NG+ + G LV ++ MN + +V T RDG K M YIRGS I++L +P D
Sbjct: 3 ELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID 62
Query: 76 MLKNAPMFKGK 86
M+K + KG+
Sbjct: 63 MVKEEVVSKGR 73
>gi|350634474|gb|EHA22836.1| hypothetical protein ASPNIDRAFT_127789 [Aspergillus niger ATCC
1015]
Length = 118
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G L ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKA 91
RG+ I++L +P+ + M K +Q N++
Sbjct: 62 RGNNIKYLRIPEEI--IEMVKEQQANQS 87
>gi|393212701|gb|EJC98200.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 119
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN + V +T R+ + + + IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTMRNRDPQSLDTLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAGAAGRGKSGI 101
IR+ +LPD ++ +AP K ++ + GRG++ +
Sbjct: 64 NIRYFVLPDALPLDTLLVDDAPKPKNRKKEEVRGRGRGRAVV 105
>gi|358365662|dbj|GAA82284.1| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus kawachii
IFO 4308]
Length = 121
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G L ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLASCDNWMNLILKEVVQTSPEGDRFFRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKA 91
RG+ I++L +P+ + M K +Q N++
Sbjct: 62 RGNNIKYLRIPEEI--IEMVKEQQANQS 87
>gi|145232181|ref|XP_001399544.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus niger CBS
513.88]
gi|134056455|emb|CAL00622.1| unnamed protein product [Aspergillus niger]
Length = 121
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G L ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKA 91
RG+ I++L +P+ + M K +Q N++
Sbjct: 62 RGNNIKYLRIPEEI--IEMVKEQQANQS 87
>gi|312077154|ref|XP_003141178.1| small nuclear ribonucleoprotein sm d1 [Loa loa]
gi|307763657|gb|EFO22891.1| small nuclear ribonucleoprotein sm d1 [Loa loa]
Length = 123
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE+ +T E NG L G +V + MN + V +T ++ + + ++ IRG+
Sbjct: 8 MKLAHES----VTIELKNGTLVTGTIVGVDVAMNTHLRTVKMTLKNREPVSLDSLSIRGN 63
Query: 67 KIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGP 115
IR++ILPD + + + K A G GRGR P
Sbjct: 64 NIRYIILPDTIPLDTLLVDDEPRKKPARG-------------GRGRAAP 99
>gi|46121885|ref|XP_385496.1| hypothetical protein FG05320.1 [Gibberella zeae PH-1]
Length = 154
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV + MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYV 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|302814278|ref|XP_002988823.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
gi|300143394|gb|EFJ10085.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
Length = 180
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFR---DG-KVKPMAN 60
+P+ LL A GH + E NG+ + G LV + MN + +V T + DG + M
Sbjct: 2 LPLSLLKTAHGHPMLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMPE 61
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGNK 90
YIRG+ I++L +PD + + + K+ ++
Sbjct: 62 CYIRGNTIKYLRVPDEVIDKVQEETKRSDR 91
>gi|156034609|ref|XP_001585723.1| hypothetical protein SS1G_13239 [Sclerotinia sclerotiorum 1980]
gi|154698643|gb|EDN98381.1| hypothetical protein SS1G_13239 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 122
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E +G+ G LV + MN + +V T DG K + IY+
Sbjct: 3 LPLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYV 62
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 63 KGNNIKYLRMPD 74
>gi|393222663|gb|EJD08147.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 130
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG+ F G LV ++ MN + +V T D + + YI
Sbjct: 2 LPLTLLNAAQNRPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADADRFWKLTECYI 61
Query: 64 RGSKIRFLILPDML 77
RGS I++L +PD L
Sbjct: 62 RGSTIKYLRVPDKL 75
>gi|367020776|ref|XP_003659673.1| hypothetical protein MYCTH_2296998 [Myceliophthora thermophila
ATCC 42464]
gi|347006940|gb|AEO54428.1| hypothetical protein MYCTH_2296998 [Myceliophthora thermophila
ATCC 42464]
Length = 118
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ +V +T R P+ + +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLETLNVRGS 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKA 91
IR+ ILPD ++ +AP K K +A
Sbjct: 64 TIRYFILPDSLPLDTLLIDDAPKPKNKARKEA 95
>gi|358394136|gb|EHK43537.1| hypothetical protein TRIATDRAFT_266952 [Trichoderma atroviride
IMI 206040]
Length = 130
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV + MN + +V T +G K + +Y+
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYV 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|213406934|ref|XP_002174238.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
gi|212002285|gb|EEB07945.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
Length = 119
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+G I E NG+ F G L + ++ MN + +V T +G K M YI
Sbjct: 2 LPLTLLNAAQGRPILVELKNGETFNGHLEKCDNYMNLTLQEVIQTMPEGDKFFRMPECYI 61
Query: 64 RGSKIRFLILPDML 77
RG+ I++L + D L
Sbjct: 62 RGNNIKYLRVQDEL 75
>gi|296812049|ref|XP_002846362.1| small nuclear ribonucleoprotein [Arthroderma otae CBS 113480]
gi|238841618|gb|EEQ31280.1| small nuclear ribonucleoprotein [Arthroderma otae CBS 113480]
Length = 126
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIY 62
+P+ LL+ A+GH + E NG+ G LV ++ MN + +V T +G + + +Y
Sbjct: 7 ALPLGLLNAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVY 66
Query: 63 IRGSKIRFLILPD 75
+RG+ I++L +P+
Sbjct: 67 VRGNNIKYLRVPE 79
>gi|355477275|ref|NP_001239058.1| U6 snRNA-associated Sm-like protein LSm4 isoform 2 [Homo sapiens]
gi|395750752|ref|XP_003779150.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Pongo abelii]
gi|397493883|ref|XP_003817825.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Pan paniscus]
gi|402904784|ref|XP_003915220.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Papio anubis]
gi|426387788|ref|XP_004060344.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Gorilla gorilla gorilla]
gi|431922013|gb|ELK19186.1| U6 snRNA-associated Sm-like protein LSm4 [Pteropus alecto]
Length = 125
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILP----D 75
E NG+ + G LV ++ MN + +V T RDG K M YIRGS I++L +P D
Sbjct: 4 ELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID 63
Query: 76 MLKNAPMFKGK 86
M+K + KG+
Sbjct: 64 MVKEEVVAKGR 74
>gi|302762304|ref|XP_002964574.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
gi|300168303|gb|EFJ34907.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
Length = 90
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFR---DG-KVKPMAN 60
+P+ LL A GH + E NG+ + G LV + MN + +V T + DG + M
Sbjct: 2 LPLSLLKTAHGHPMLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMPE 61
Query: 61 IYIRGSKIRFLILPDMLKN 79
YIRG+ I++L +PD + +
Sbjct: 62 CYIRGNTIKYLRVPDEVSD 80
>gi|380477058|emb|CCF44358.1| small nuclear ribonucleoprotein [Colletotrichum higginsianum]
Length = 170
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV + MN + +V T +G K + +Y+
Sbjct: 41 LPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFVKIPEVYV 100
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGN 89
+G+ I++L +PD + + + K Q N
Sbjct: 101 KGNNIKYLRVPDDIID--VVKENQAN 124
>gi|345564647|gb|EGX47607.1| hypothetical protein AOL_s00083g115 [Arthrobotrys oligospora ATCC
24927]
Length = 132
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN ++ V +T R+ + + + I IRGS
Sbjct: 4 VRFLMKCANETVTVELKNGTIIHGTITTVTPTMNTSLRTVRMTVRNREPQTLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|402589501|gb|EJW83433.1| small nuclear ribonucleoprotein Sm D1 [Wuchereria bancrofti]
Length = 123
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE+ +T E NG L G +V + MN + V +T ++ + + ++ IRG+
Sbjct: 8 MKLAHES----VTIELKNGTLVTGTIVGVDVAMNTHLRTVKMTLKNREPVSLDSLSIRGN 63
Query: 67 KIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGP 115
IR++ILPD + + + K A G GRGR P
Sbjct: 64 NIRYIILPDTIPLDTLLVDDEPRKKPARG-------------GRGRTAP 99
>gi|398390838|ref|XP_003848879.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
gi|339468755|gb|EGP83855.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
Length = 129
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E G+ G LV + MN + +V T DG K + Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKTGETLNGHLVSCDTYMNIMLKEVVQTSPDGDKFFRLPECYV 61
Query: 64 RGSKIRFLILPDMLKNA 80
RG+ I++L +PD + +A
Sbjct: 62 RGNNIKYLRVPDEVVDA 78
>gi|320592072|gb|EFX04511.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 348
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSK 67
+ L + +T E NG + G + MN A+ +V +T + P+ I +RGS
Sbjct: 221 RFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPKGQDPVPLDTINLRGST 280
Query: 68 IRFLILPD-------MLKNAPMFKG---KQGNKAGA 93
IR+ ILPD ++ +AP K K+ ++A A
Sbjct: 281 IRYFILPDSLPLDTLLVDDAPKPKNKARKESDRAAA 316
>gi|358382645|gb|EHK20316.1| hypothetical protein TRIVIDRAFT_68894 [Trichoderma virens Gv29-8]
Length = 129
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV + MN + +V T +G K + +Y+
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYV 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|213401339|ref|XP_002171442.1| small nuclear ribonucleoprotein Sm D1 [Schizosaccharomyces
japonicus yFS275]
gi|211999489|gb|EEB05149.1| small nuclear ribonucleoprotein Sm D1 [Schizosaccharomyces
japonicus yFS275]
Length = 114
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + I+ E NG + G + + MN + V +T +D + P+ + IRGS
Sbjct: 4 VRFLMKLTNETISIELKNGTIVNGTITSVDMQMNTHLKAVKMTVKDREPVPLETLSIRGS 63
Query: 67 KIRFLILPDML 77
+R+ ILPD L
Sbjct: 64 NVRYFILPDSL 74
>gi|115383910|ref|XP_001208502.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
gi|114196194|gb|EAU37894.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
Length = 119
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G L ++ MN + +V T +G + + +YI
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFKLPEVYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNK 90
RG+ I++L +P+ + M + +Q N+
Sbjct: 62 RGNNIKYLRIPEEI--VEMVREQQQNQ 86
>gi|346325131|gb|EGX94728.1| U6 snRNA-associated Sm-like protein LSM4, putative [Cordyceps
militaris CM01]
Length = 163
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMA 59
+S+ +P+ LL+ A+GH + E NG+ G LV + MN + V T +G K +
Sbjct: 33 VSLQLPLGLLNAAQGHPMLVELKNGETLNGHLVNCDTWMNLTLTQVVQTSPEGDKFMRLK 92
Query: 60 NIYIRGSKIRFL 71
+Y++G+ I++L
Sbjct: 93 EVYVKGNNIKYL 104
>gi|310795553|gb|EFQ31014.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 128
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV + MN + +V T +G K + +Y+
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFVKIPEVYV 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|255946281|ref|XP_002563908.1| Pc20g14300 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588643|emb|CAP86759.1| Pc20g14300 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 121
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV ++ MN + +V T +G + + +YI
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVTCDNFMNLILREVVQTSPEGDRFFRLPEVYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNK 90
RG+ I++L +P+ + + K +Q N+
Sbjct: 62 RGNNIKYLRVPEEI--VEIVKEQQQNQ 86
>gi|402087104|gb|EJT82002.1| small nuclear ribonucleoprotein Sm D1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 123
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ +V +T R P+ + IRGS
Sbjct: 4 VRFLMKCTNETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMNIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|281343535|gb|EFB19119.1| hypothetical protein PANDA_000549 [Ailuropoda melanoleuca]
Length = 96
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILP----D 75
E NG+ + G LV ++ MN + +V T RDG K M YIRGS I++L +P D
Sbjct: 4 ELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID 63
Query: 76 MLKNAPMFKGK 86
M+K + KG+
Sbjct: 64 MVKEEVVAKGR 74
>gi|67540086|ref|XP_663817.1| hypothetical protein AN6213.2 [Aspergillus nidulans FGSC A4]
gi|40738809|gb|EAA57999.1| hypothetical protein AN6213.2 [Aspergillus nidulans FGSC A4]
Length = 775
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G L ++ MN + +V T +G + + +Y+
Sbjct: 12 LPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILREVVQTSPEGDRFFKLPEVYV 71
Query: 64 RGSKIRFLILP----DMLK 78
RG+ I++L +P DM+K
Sbjct: 72 RGNNIKYLRIPEEIIDMVK 90
>gi|452845143|gb|EME47076.1| hypothetical protein DOTSEDRAFT_124881, partial [Dothistroma
septosporum NZE10]
Length = 126
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E G+ G LV + MN + +V T DG K + Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKTGETLNGHLVACDTYMNITLKEVVQTSPDGDKFFRLPECYV 61
Query: 64 RGSKIRFLILPDMLKNA 80
RG+ I++L +PD + +A
Sbjct: 62 RGNNIKYLRVPDEVVDA 78
>gi|194761808|ref|XP_001963115.1| GF14101 [Drosophila ananassae]
gi|190616812|gb|EDV32336.1| GF14101 [Drosophila ananassae]
Length = 140
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPDM 76
+ E NG+ + G LV + MN + DV T +DG + M YIRGS I++L +PD
Sbjct: 1 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 60
Query: 77 LKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGGRGG 123
+ M K A A R ++ + + + G QRGGR G
Sbjct: 61 V--IDMVK----EDAQAKSRNRTEMNKNRG----GNSSQNQRGGRPG 97
>gi|344241344|gb|EGV97447.1| U6 snRNA-associated Sm-like protein LSm4 [Cricetulus griseus]
Length = 124
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPDML 77
E NG+ + G LV ++ MN + +V T RDG K M YIRGS I++L +PD +
Sbjct: 4 ELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEI 61
>gi|342870013|gb|EGU73372.1| hypothetical protein FOXB_16133 [Fusarium oxysporum Fo5176]
Length = 127
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV + MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYV 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|294944597|ref|XP_002784335.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
gi|239897369|gb|EER16131.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
Length = 114
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + +MN M +V VT R M ++ IRGS
Sbjct: 4 VRFLQKLNSETVTVELKNGTVVHGTVTGVDVSMNTHMKNVKVTVRGRNPVGMDHLTIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD +
Sbjct: 64 TIRYFILPDHI 74
>gi|443922752|gb|ELU42142.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 137
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIY 62
+P+ LL+ A+ + E NG+ F G LV + MN + +V T +G + + Y
Sbjct: 11 SLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDTFMNITLREVYQTSPEGDRFWKLKECY 70
Query: 63 IRGSKIRFLILPDML 77
IRGS I++L +PD L
Sbjct: 71 IRGSMIKYLRVPDAL 85
>gi|367011739|ref|XP_003680370.1| hypothetical protein TDEL_0C02700 [Torulaspora delbrueckii]
gi|359748029|emb|CCE91159.1| hypothetical protein TDEL_0C02700 [Torulaspora delbrueckii]
Length = 175
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVT----------VTFRDGK 54
+P+ LL A+G ++ E NG++ G+L ++ MN +++V+ + F+
Sbjct: 2 LPLYLLTNAKGQQVSVELKNGEIVEGELTNVDNWMNLTLSNVSQQDTIGNSGNIAFQKEI 61
Query: 55 VKPMANIYIRGSKIRFLILPD 75
VK +Y+RG+ I+++ L D
Sbjct: 62 VKSQE-VYLRGTYIKYIKLQD 81
>gi|294950553|ref|XP_002786687.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
gi|239900979|gb|EER18483.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
Length = 114
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + +MN M +V VT R M ++ IRGS
Sbjct: 4 VRFLQKLNSETVTVELKNGTVVHGTVTGVDVSMNTHMKNVKVTVRGRNPVGMDHLTIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD +
Sbjct: 64 TIRYFILPDHI 74
>gi|407917344|gb|EKG10658.1| hypothetical protein MPH_12237 [Macrophomina phaseolina MS6]
Length = 122
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + + +T E NG + G + MN A+ V +T ++ + + I IRGS
Sbjct: 4 VRFLMKCQNETVTIELKNGTVVNGTIASVSPTMNTALRTVKMTPKNRETMTLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|336270436|ref|XP_003349977.1| hypothetical protein SMAC_00869 [Sordaria macrospora k-hell]
gi|380095367|emb|CCC06840.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 130
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ +L A+GH + E NG+ G L++ + MN + +V T +G K + +Y+
Sbjct: 2 LPLGILTAAQGHPMLVELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFARLPEVYV 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|453086958|gb|EMF14999.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 138
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E G+ G LV + MN + +V T +G +A Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKTGETLNGHLVSCDTYMNITLKEVVQTSPEGDHFFRLAECYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAG 92
RG+ I++L +PD + + + K +Q N+
Sbjct: 62 RGNNIKYLRVPDEVVD--VVKDQQANQQS 88
>gi|242809941|ref|XP_002485479.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218716104|gb|EED15526.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 118
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTTPEGDRFFRLPEVYV 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +P+
Sbjct: 62 RGNNIKYLRVPE 73
>gi|195473653|ref|XP_002089107.1| GE25987 [Drosophila yakuba]
gi|194175208|gb|EDW88819.1| GE25987 [Drosophila yakuba]
Length = 140
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPD 75
E NG+ + G LV + MN + DV T +DG + M YIRGS I++L +PD
Sbjct: 4 ELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPD 59
>gi|195339803|ref|XP_002036506.1| GM11687 [Drosophila sechellia]
gi|194130386|gb|EDW52429.1| GM11687 [Drosophila sechellia]
Length = 140
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPD 75
E NG+ + G LV + MN + DV T +DG + M YIRGS I++L +PD
Sbjct: 4 ELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPD 59
>gi|159476634|ref|XP_001696416.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
gi|158282641|gb|EDP08393.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
Length = 134
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G L + MN +++V T +DG + M YI
Sbjct: 2 LPLSLLKTAQRHGVLVELKNGETYNGYLQHCDTWMNLHLSEVICTSKDGQRFFKMPEAYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I+++ +P+
Sbjct: 62 RGNTIKYISVPE 73
>gi|401422144|ref|XP_003875560.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491798|emb|CBZ27071.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 103
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
G I L + G ++ E N + G++ + NMN M+ +T + + +
Sbjct: 11 GTLITFLQQLRGTLVEIELKNASIVSGEISYVDANMNTYMSHAKITSKGKNPVEVEEYMV 70
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGR 96
RGS IR++I+P+ L + K K G + +
Sbjct: 71 RGSTIRYIIMPESLNTYDILKQASTKKNGTSKK 103
>gi|156030963|ref|XP_001584807.1| hypothetical protein SS1G_14262 [Sclerotinia sclerotiorum 1980]
gi|154700653|gb|EDO00392.1| hypothetical protein SS1G_14262 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 136
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T ++G + I +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTPKNGASLSLDTINLRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|157876556|ref|XP_001686624.1| putative small nuclear ribonucleaoprotein [Leishmania major
strain Friedlin]
gi|68129699|emb|CAJ09005.1| putative small nuclear ribonucleaoprotein [Leishmania major
strain Friedlin]
Length = 141
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNM-NCAMADVTVTFRDGKVKPMANIY 62
IP L+ EA +T ET GD+++G L + + N + +V +D +
Sbjct: 10 DIPSSLVFEAMHSRVTIETVEGDVYKGTLAAFDISRGNIELVEVRHQAKDSTFGFYERVT 69
Query: 63 IRGSKIRFLILPDMLKNAPMFKGKQGN 89
+RGSKIR ++LP +K AP + ++ +
Sbjct: 70 VRGSKIRIVLLPPEMKAAPSLQWRRES 96
>gi|365981439|ref|XP_003667553.1| hypothetical protein NDAI_0A01520 [Naumovozyma dairenensis CBS
421]
gi|343766319|emb|CCD22310.1| hypothetical protein NDAI_0A01520 [Naumovozyma dairenensis CBS
421]
Length = 201
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTV-----TFRDGKVKPM- 58
+P+ LL A+G + E NG++ GKL ++ MN +++V+ F + + M
Sbjct: 2 LPLYLLTNAKGQQMRVELKNGEVIEGKLTNVDNWMNLTLSNVSEYKGSDAFASPQTEVMK 61
Query: 59 -ANIYIRGSKIRFLILPD 75
IY+RG+ I+++ LPD
Sbjct: 62 STEIYVRGTFIKYINLPD 79
>gi|224015193|ref|XP_002297255.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968091|gb|EED86446.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 139
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A + E +G + G+LV + MN + DV T ++G K + YI
Sbjct: 2 LPLSLLKSATTLPLLVELKSGTTYNGRLVNCDTYMNLNLRDVVCTSKEGDKFWKLNECYI 61
Query: 64 RGSKIRFLILPD 75
RGS +++L LP+
Sbjct: 62 RGSSVKYLRLPE 73
>gi|224015187|ref|XP_002297252.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968088|gb|EED86443.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 139
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A + E +G + G+LV + MN + DV T ++G K + YI
Sbjct: 2 LPLSLLKSATTLPLLVELKSGTTYNGRLVNCDTYMNLNLRDVVCTSKEGDKFWKLNECYI 61
Query: 64 RGSKIRFLILPD 75
RGS +++L LP+
Sbjct: 62 RGSSVKYLRLPE 73
>gi|408393268|gb|EKJ72533.1| hypothetical protein FPSE_07170 [Fusarium pseudograminearum
CS3096]
Length = 139
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV + MN + +V T +G + + +Y+
Sbjct: 17 LPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYV 76
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 77 KGNNIKYLRVPD 88
>gi|237839011|ref|XP_002368803.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|211966467|gb|EEB01663.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221481300|gb|EEE19694.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii GT1]
gi|221502024|gb|EEE27770.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii VEG]
Length = 121
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + E NG + G +V + +MN + +V +T + G + ++ IRG+
Sbjct: 4 VRFLMRLANETLVIELKNGTVIHGTVVGVDISMNTHLKNVKMTMKQGNPTSLEHLTIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|85107173|ref|XP_962325.1| hypothetical protein NCU07683 [Neurospora crassa OR74A]
gi|28923928|gb|EAA33089.1| hypothetical protein NCU07683 [Neurospora crassa OR74A]
Length = 130
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ +L A+GH + E NG+ G L++ + MN + +V T +G K + +Y+
Sbjct: 2 LPLGILTAAQGHPMLVELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFVRLPEVYV 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|367045678|ref|XP_003653219.1| hypothetical protein THITE_2115403 [Thielavia terrestris NRRL
8126]
gi|347000481|gb|AEO66883.1| hypothetical protein THITE_2115403 [Thielavia terrestris NRRL
8126]
Length = 127
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV + MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVLCDTWMNLTLREVVQTSPEGDRFMRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKA 91
+G+ I++L +PD + + + K +Q ++
Sbjct: 62 KGNNIKYLRVPDEIID--IVKEQQSQQS 87
>gi|326490932|dbj|BAJ90133.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 137
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 53 GKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGKQGN-----KAGAAGRGKSGILRAQAA 107
KV + +++I GS++RF+I+ DMLKNAPM K + A GRG++ +RA +
Sbjct: 3 SKVSQLEHVFIMGSRVRFMIISDMLKNAPMVKLLEARIRGKGSAIGVGRGRALAMRAMSV 62
>gi|389632099|ref|XP_003713702.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae 70-15]
gi|351646035|gb|EHA53895.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae 70-15]
gi|440473990|gb|ELQ42759.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae Y34]
gi|440485032|gb|ELQ65031.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae P131]
Length = 125
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ +V +T R P+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMNIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|449300793|gb|EMC96805.1| hypothetical protein BAUCODRAFT_122769 [Baudoinia compniacensis
UAMH 10762]
Length = 125
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV + MN + +V T +G K + Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDTYMNLTLKEVVQTSPEGDKFFRLPECYV 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNNIKYLRVPD 73
>gi|121715750|ref|XP_001275484.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
gi|119403641|gb|EAW14058.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
Length = 119
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G L ++ MN + +V +G + + +YI
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQASPEGDRFFRLPEVYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNK 90
RG+ I++L +P+ + M K +Q N+
Sbjct: 62 RGNNIKYLRIPEEI--VEMVKEQQQNQ 86
>gi|401400718|ref|XP_003880841.1| sm protein, related [Neospora caninum Liverpool]
gi|325115253|emb|CBZ50808.1| sm protein, related [Neospora caninum Liverpool]
Length = 121
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + E NG + G +V + +MN + +V +T + G + ++ IRG+
Sbjct: 4 VRFLMRLANETLVIELKNGTVIHGTVVGVDISMNTHLKNVKMTLKHGNPTSLEHLTIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|116196218|ref|XP_001223921.1| hypothetical protein CHGG_04707 [Chaetomium globosum CBS 148.51]
gi|88180620|gb|EAQ88088.1| hypothetical protein CHGG_04707 [Chaetomium globosum CBS 148.51]
Length = 127
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+GH + E NG+ G LV + MN + +V T +G K + +Y+
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVLCDTWMNLTLREVVQTSPEGDKFVRLPEVYV 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|198470479|ref|XP_002133476.1| GA22792 [Drosophila pseudoobscura pseudoobscura]
gi|198145470|gb|EDY72104.1| GA22792 [Drosophila pseudoobscura pseudoobscura]
Length = 137
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPD 75
E NG+ + G LV + MN + DV T +DG + M YIRGS I++L +PD
Sbjct: 4 ELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPD 59
>gi|154297620|ref|XP_001549236.1| hypothetical protein BC1G_12655 [Botryotinia fuckeliana B05.10]
gi|347842491|emb|CCD57063.1| hypothetical protein [Botryotinia fuckeliana]
Length = 137
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T ++G + I +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTPKNGTSLTLDVINLRGS 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAG 92
IR+ ILPD ++ +AP K K +A
Sbjct: 64 TIRYYILPDSLPLDTLLIDDAPKPKNKARKEAA 96
>gi|340718601|ref|XP_003397753.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like isoform
2 [Bombus terrestris]
Length = 148
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV + MN + + DG K M YI
Sbjct: 17 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLRE------DGDKFWRMPECYI 70
Query: 64 RGSKIRFLILPD 75
RGS I++L +PD
Sbjct: 71 RGSTIKYLRIPD 82
>gi|361128927|gb|EHL00852.1| putative Small nuclear ribonucleoprotein Sm D1 [Glarea lozoyensis
74030]
Length = 132
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T R + I +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTQRGRDPIALDTINLRGS 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAGAAGRG 97
IR+ ILPD ++ +AP K K + AA RG
Sbjct: 64 TIRYYILPDSLPLDTLLIDDAP--KPKNKARKEAADRG 99
>gi|336470904|gb|EGO59065.1| hypothetical protein NEUTE1DRAFT_116371 [Neurospora tetrasperma
FGSC 2508]
gi|350291974|gb|EGZ73169.1| Sm-like ribonucleoprotein [Neurospora tetrasperma FGSC 2509]
Length = 130
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ +L A+GH + E NG+ G L++ + MN + +V T +G K + +Y+
Sbjct: 2 LPLGILTAAQGHPMLVELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFVRLREVYV 61
Query: 64 RGSKIRFLILPD 75
+G+ I++L +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|66357964|ref|XP_626160.1| small nuclear ribonucleoprotein D1. SM domain containing protein
[Cryptosporidium parvum Iowa II]
gi|46227255|gb|EAK88205.1| small nuclear ribonucleoprotein D1. SM domain containing protein
[Cryptosporidium parvum Iowa II]
Length = 137
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I+ L + + + E NG + +G +V + +MN + +V ++ + ++ I +RG+
Sbjct: 15 IRFLMKLVNNSVVIELKNGTIIQGTIVTVDMSMNTYLKNVKMSVKHRNPVSLSQITVRGN 74
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 75 TIRYFILPDSL 85
>gi|119481265|ref|XP_001260661.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|146322938|ref|XP_755534.2| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus fumigatus
Af293]
gi|119408815|gb|EAW18764.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|129558535|gb|EAL93496.2| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
fumigatus Af293]
Length = 119
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G L ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYV 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNK 90
RG+ I++L +P+ + M K +Q ++
Sbjct: 62 RGNNIKYLRIPEEI--VEMVKEQQQSQ 86
>gi|71018117|ref|XP_759289.1| hypothetical protein UM03142.1 [Ustilago maydis 521]
gi|46099139|gb|EAK84372.1| hypothetical protein UM03142.1 [Ustilago maydis 521]
Length = 192
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN + V +T R + + IRG+
Sbjct: 71 VRFLMKLNNESVTIELKNGTVVHGTVTGVDIQMNTHLKTVKMTVRGRPAVTLDTLSIRGN 130
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAGAAGRG 97
IR+ ILPD ++ +AP KGK+ + RG
Sbjct: 131 NIRYWILPDALPLDMLLVDDAPKPKGKRKDPVARGARG 168
>gi|118394903|ref|XP_001029810.1| Sm protein [Tetrahymena thermophila]
gi|89284080|gb|EAR82147.1| Sm protein [Tetrahymena thermophila SB210]
Length = 111
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +G +T E NG G ++ + MN ++ V +T + + ++ IRG+
Sbjct: 4 VRFLMKLKGQTVTIELKNGTQIIGSIIAVDIRMNTHLSKVKMTIKGKNPVSLDHLTIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAGAAGRGKSGILRAQAAR 108
IR+ LPD ++ + P + +Q N+ A GK + RA A R
Sbjct: 64 NIRYFQLPDALPLDTLLVDDQPKIQKRQQNQKDARKGGKK-VKRAPARR 111
>gi|412992977|emb|CCO16510.1| U6 snRNA-associated Sm-like protein LSm4 [Bathycoccus prasinos]
Length = 122
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL ++GH + E NG+ + G L + MN + V T +DG + + +I
Sbjct: 2 LPLSLLKTSQGHSMLVELKNGETYNGVLNACDAWMNVHLTKVVCTNKDGDRFHELETCFI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRG 97
RG+ I+++ + + + K+ N+ AA RG
Sbjct: 62 RGNTIKYMCVQEEIIQL----AKEENERRAAQRG 91
>gi|82913333|ref|XP_728601.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485036|gb|EAA20166.1| Sm protein, putative [Plasmodium yoelii yoelii]
Length = 130
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
P+ LL ++ + E NG+ + G LV + MN M ++ T +DG K ++ Y+
Sbjct: 1 FPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYV 60
Query: 64 RGSKIRFLILPDM-LKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGGRG 122
RGS ++++ + D ++NA +Q ++ A + G +RGGRG
Sbjct: 61 RGSSVKYIRVQDQAIENAIEETAEQKSR-NAGRGRGGVRGSGRNRGRGFGRGTDKRGGRG 119
Query: 123 G 123
G
Sbjct: 120 G 120
>gi|290988841|ref|XP_002677099.1| predicted protein [Naegleria gruberi]
gi|284090705|gb|EFC44355.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSK 67
+ L + G +T E NG + G +V + +MN + V +T + P+ ++ +RGS
Sbjct: 1 RFLMKLSGESVTIELKNGTVIAGTIVGVDMSMNTHLKAVKMTLKGKNPLPLEHMSVRGSN 60
Query: 68 IRFLILPDML 77
IR++ILP+ +
Sbjct: 61 IRYVILPETI 70
>gi|308804932|ref|XP_003079778.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
gi|116058235|emb|CAL53424.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
Length = 779
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANI 61
I +P+ LL + G + E NG+ + G L + MN + +V T +DG + M
Sbjct: 658 IMLPLTLLKTSCGRPMLVELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMEEC 717
Query: 62 YIRGSKIRFLILPD 75
Y+RG+ I+++ +PD
Sbjct: 718 YVRGNTIKYVCVPD 731
>gi|46105460|ref|XP_380534.1| hypothetical protein FG00358.1 [Gibberella zeae PH-1]
gi|408400659|gb|EKJ79736.1| hypothetical protein FPSE_00016 [Fusarium pseudograminearum
CS3096]
Length = 126
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ +V +T + + + + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGS 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAG 92
IR+ ILPD ++ +AP K K +A
Sbjct: 64 TIRYFILPDSLPLDTLLIDDAPKPKNKARKEAA 96
>gi|126133080|ref|XP_001383065.1| hypothetical protein PICST_54497 [Scheffersomyces stipitis CBS
6054]
gi|126094890|gb|ABN65036.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 147
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKV-KPMANIYI 63
+P+ LL A+ I E NG+ G LV + MN + DV T +G+ + +YI
Sbjct: 2 LPLYLLTAAKTKQILIELKNGETLNGGLVNCDSWMNLTLKDVIQTSSNGETFLKIPEVYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKS 99
RG+ I++L LP+ + M K+ N R ++
Sbjct: 62 RGNHIKYLRLPEEI----MDYAKEQNILNMEQRNRN 93
>gi|67615310|ref|XP_667428.1| small nuclear ribonucleoprotein smd1 [Cryptosporidium hominis
TU502]
gi|54658569|gb|EAL37203.1| small nuclear ribonucleoprotein smd1 [Cryptosporidium hominis]
Length = 126
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I+ L + + + E NG + +G +V + +MN + +V ++ + ++ I +RG+
Sbjct: 4 IRFLMKLINNSVVIELKNGTIIQGTIVSVDMSMNTYLKNVKMSVKHRNPVSLSQITVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|19113071|ref|NP_596279.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|12230213|sp|O14352.1|LSM4_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|2276355|emb|CAB10801.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe]
Length = 121
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ +G I E NG+ F G L ++ MN + +V T DG K + YI
Sbjct: 2 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L + D
Sbjct: 62 RGNNIKYLRIQD 73
>gi|340057108|emb|CCC51450.1| putative small nuclear ribonucleoprotein [Trypanosoma vivax Y486]
Length = 127
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNM-NCAMADVTVTFRDGKVKPMANIYI 63
+P++ + EA G + ET G ++ G+L + + + + +++V RD + ++I
Sbjct: 4 VPVRAVCEATGFFVKVETVEGTVYLGRLDKVDVSCGDVELSEVRCQHRDSSLSVEGRVFI 63
Query: 64 RGSKIRFLILPDMLKNAPMFKGK 86
+GS +R L LP ++NA K
Sbjct: 64 KGSCVRLLHLPSDMRNALFLDWK 86
>gi|50545437|ref|XP_500256.1| YALI0A19756p [Yarrowia lipolytica]
gi|49646121|emb|CAG84194.1| YALI0A19756p [Yarrowia lipolytica CLIB122]
Length = 131
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGK-VKPMANIYI 63
+P+ LL+ A+G + E +G+ RG L++ + MN + +V G+ ++ Y+
Sbjct: 4 LPLSLLNAAQGQPMLVELKSGESLRGHLLKCDHWMNLTLKEVEEFSASGENTATVSEYYV 63
Query: 64 RGSKIRFLILPDMLKNA 80
RGS I+ L LPD L ++
Sbjct: 64 RGSNIKALQLPDELLHS 80
>gi|440804582|gb|ELR25459.1| small nuclear ribonucleoprotein Sm D1, putative [Acanthamoeba
castellanii str. Neff]
Length = 125
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + +MN + V +T + + + IRG+
Sbjct: 4 VRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPINLDTLSIRGN 63
Query: 67 KIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQ-AARGRGRGGP 115
IR+ +LPD L + G++G+ R AA G GR P
Sbjct: 64 NIRYYLLPDTLNLDTLLVDDTPRPKPTKKVGEAGVPRGDVAAAGEGRAVP 113
>gi|50543206|ref|XP_499769.1| YALI0A04961p [Yarrowia lipolytica]
gi|49645634|emb|CAG83694.1| YALI0A04961p [Yarrowia lipolytica CLIB122]
Length = 138
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + + E NG + G ++ +NMN + +V +T ++ + I IRG+
Sbjct: 4 VRFLMKLTSESVQIELKNGTVLLGTVMSVSNNMNTTLKNVKMTMKNRPPTSLDYINIRGN 63
Query: 67 KIRFLILPDML 77
IRF ILPD L
Sbjct: 64 TIRFFILPDSL 74
>gi|50413178|ref|XP_457218.1| DEHA2B05918p [Debaryomyces hansenii CBS767]
gi|49652883|emb|CAG85213.1| DEHA2B05918p [Debaryomyces hansenii CBS767]
Length = 165
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKV-KPMANIYI 63
+P+ LL A+ I E NG+ G+LV + MN + DV + +G+ + YI
Sbjct: 2 LPLYLLTSAKNQPILVELKNGESLNGQLVNCDSWMNLTLKDVIQSSSNGETFVKLPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L LP+
Sbjct: 62 RGNHIKYLRLPE 73
>gi|321254335|ref|XP_003193040.1| hypothetical protein CGB_C7440C [Cryptococcus gattii WM276]
gi|317459509|gb|ADV21253.1| hypothetical protein CNBC2050 [Cryptococcus gattii WM276]
Length = 141
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+G + E NG F G LVE + MN + +V T DG + M ++I
Sbjct: 2 LPLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFI 61
Query: 64 RGSKIRFL-ILPDMLKNAPMFKGKQGNKAGAAG 95
+G+ I++ I D+L+ A + +KA AA
Sbjct: 62 KGNIIKYFRIADDILEQA----AAEQDKARAAN 90
>gi|169617530|ref|XP_001802179.1| hypothetical protein SNOG_11947 [Phaeosphaeria nodorum SN15]
gi|111059239|gb|EAT80359.1| hypothetical protein SNOG_11947 [Phaeosphaeria nodorum SN15]
Length = 137
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + + +T E NG + G + MN A+ V T + + ++ +RGS
Sbjct: 4 VRFLMKCQNETVTVELKNGSIVNGTITSVSPLMNVALRTVKYTPKSRDTVTLDSMTVRGS 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKA--GAA 94
IR++ILPD ++ +AP K K +A GAA
Sbjct: 64 TIRYIILPDSLPLDTLLIDDAPKPKNKARKEADRGAA 100
>gi|402216859|gb|EJT96942.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 132
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG+ G LV ++ MN + +V T +G + + Y+
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETLNGHLVNCDNFMNITLREVYQTSPEGDRFWKLKECYV 61
Query: 64 RGSKIRFLILPDML 77
RGS I++L +PD L
Sbjct: 62 RGSTIKYLRVPDQL 75
>gi|71020725|ref|XP_760593.1| hypothetical protein UM04446.1 [Ustilago maydis 521]
gi|46100481|gb|EAK85714.1| hypothetical protein UM04446.1 [Ustilago maydis 521]
Length = 146
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG F G LV ++ MN + +V T G + YI
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGSTFNGHLVACDNFMNLTLREVYETSASGEQFWKQKECYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNK 90
RGS I++ + D + + + +Q K
Sbjct: 62 RGSTIKYCRVADSVIDQVRQREEQARK 88
>gi|330943683|ref|XP_003306243.1| hypothetical protein PTT_19359 [Pyrenophora teres f. teres 0-1]
gi|311316316|gb|EFQ85673.1| hypothetical protein PTT_19359 [Pyrenophora teres f. teres 0-1]
Length = 132
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + + +T E NG + G + MN A+ V T + + + +RGS
Sbjct: 4 VRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTVRGS 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAGAA 94
IR++ILPD ++ +AP K K + G A
Sbjct: 64 TIRYIILPDSLPLDTLLIDDAPKPKNKARKEVGGA 98
>gi|189200737|ref|XP_001936705.1| small nuclear ribonucleoprotein Sm D1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187983804|gb|EDU49292.1| small nuclear ribonucleoprotein Sm D1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 132
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + + +T E NG + G + MN A+ V T + + + +RGS
Sbjct: 4 VRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTVRGS 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAGAA 94
IR++ILPD ++ +AP K K + G A
Sbjct: 64 TIRYIILPDSLPLDTLLIDDAPKPKNKARKEVGGA 98
>gi|440791795|gb|ELR13033.1| LSM domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 131
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPDML-- 77
E NG+ + G LV + MN + DV T RDG + + YIRG+ I++L +PD +
Sbjct: 4 ELKNGETYNGHLVNCDGWMNINLRDVICTSRDGERFWRIPQCYIRGNTIKYLCIPDEVID 63
Query: 78 ---KNAPMFKGKQGNKA 91
+NAP+ KQG A
Sbjct: 64 MVQENAPI--PKQGAAA 78
>gi|353238410|emb|CCA70357.1| probable small nuclear ribonucleoprotein SNRPD1 [Piriformospora
indica DSM 11827]
Length = 123
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN + V +T R+ +P+ ++ IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVRLTARNRDPQPLDSLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDAL 74
>gi|399218474|emb|CCF75361.1| unnamed protein product [Babesia microti strain RI]
Length = 122
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G L + MN M +V T R+G K + ++
Sbjct: 3 LPLTLLRTAQGHPMLVELKNGETCSGILTTCDGFMNLHMRNVVRTSREGDKFWKINECFV 62
Query: 64 RGSKIRFLILPDMLKN 79
RG+ ++ + LPD + N
Sbjct: 63 RGNNLKSVRLPDQVAN 78
>gi|391341871|ref|XP_003745250.1| PREDICTED: uncharacterized protein LOC100904769 [Metaseiulus
occidentalis]
Length = 196
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ L A+ H + E NG+ + G LV ++ MN + +V R+G KV + Y+
Sbjct: 82 LPLSPLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLGEVICKSREGDKVWRIPECYV 141
Query: 64 RGSKIRFLILPD 75
R + IRF +PD
Sbjct: 142 RCNTIRFPRIPD 153
>gi|378734306|gb|EHY60765.1| hypothetical protein HMPREF1120_08709 [Exophiala dermatitidis
NIH/UT8656]
Length = 135
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV + MN + +V T +G + + Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDRFWRLPEAYV 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +P+
Sbjct: 62 RGNNIKYLRVPE 73
>gi|195384890|ref|XP_002051145.1| GJ13818 [Drosophila virilis]
gi|194147602|gb|EDW63300.1| GJ13818 [Drosophila virilis]
Length = 140
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPD 75
+ E NG+ + G LV + MN + DV T +DG + M +IRGS I++L +PD
Sbjct: 1 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECFIRGSTIKYLRIPD 59
>gi|312086540|ref|XP_003145116.1| hypothetical protein LOAG_09541 [Loa loa]
Length = 120
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPD 75
+ E +G+ + G LV + MN + D T RDG + M +Y+RGS I++L +PD
Sbjct: 1 MLVELKSGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRGSTIKYLRIPD 59
>gi|68064470|ref|XP_674219.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated
Sm-like protein LsM4 [Plasmodium berghei strain ANKA]
gi|56492635|emb|CAH99966.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated
Sm-like protein LsM4, putative [Plasmodium berghei]
Length = 130
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
P+ LL ++ + E NG+ + G LV + MN M ++ T +DG K ++ Y+
Sbjct: 1 FPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYV 60
Query: 64 RGSKIRFLILPDM-LKNA 80
RGS ++++ + D ++NA
Sbjct: 61 RGSSVKYIRVQDQAIENA 78
>gi|448087362|ref|XP_004196309.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
gi|359377731|emb|CCE86114.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
Length = 129
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDML 77
+T E NG G+++ +MN +M +V + + + + IRG++IR +ILPD L
Sbjct: 18 VTLELKNGSSINGQILSCSPSMNISMKNVKLIRPHQDPQLLQYMNIRGNQIRLVILPDDL 77
Query: 78 -------KNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGG 120
K+A KG QG AG + +GI ++ A GR +G P RGG
Sbjct: 78 NIDSVLAKSAVTIKG-QG--AGPGSQNTNGI-GSKGALGRNKGAP--RGG 121
>gi|366989241|ref|XP_003674388.1| hypothetical protein NCAS_0A14510 [Naumovozyma castellii CBS
4309]
gi|342300251|emb|CCC68009.1| hypothetical protein NCAS_0A14510 [Naumovozyma castellii CBS
4309]
Length = 182
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADV-------TVTFRDGKVKP 57
+P+ LL A+G + E NG++ GKL ++ MN +++V T+ +V
Sbjct: 2 LPLYLLTNAKGQQMRVELKNGEIVEGKLTNVDNWMNLTLSNVSEYKSSDTIATPQTEVVK 61
Query: 58 MANIYIRGSKIRFLILPD 75
IY+RG+ I+++ L D
Sbjct: 62 STEIYVRGTFIKYINLQD 79
>gi|151944828|gb|EDN63087.1| conserved protein [Saccharomyces cerevisiae YJM789]
Length = 187
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN---- 60
+P+ LL A+G + E NG++ +G L ++ MN +++VT + + N
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSENNAESS 61
Query: 61 -------IYIRGSKIRFLILPD 75
IYIRG+ I+F+ L D
Sbjct: 62 KAVKLNEIYIRGTFIKFIKLQD 83
>gi|365766129|gb|EHN07630.1| Lsm4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 187
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN---- 60
+P+ LL A+G + E NG++ +G L ++ MN +++VT + + N
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESS 61
Query: 61 -------IYIRGSKIRFLILPD 75
IYIRG+ I+F+ L D
Sbjct: 62 KAVKSNEIYIRGTFIKFIKLQD 83
>gi|336375284|gb|EGO03620.1| hypothetical protein SERLA73DRAFT_175163 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388346|gb|EGO29490.1| hypothetical protein SERLADRAFT_457290 [Serpula lacrymans var.
lacrymans S7.9]
Length = 121
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN + V +T R+ + ++ IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKMTTRNRDPTSLDSLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAGAAGRGKSGILRA 104
IR+ +LPD ++ +AP KG++ + A GRG+ + RA
Sbjct: 64 NIRYFVLPDALPLDTLLVDDAPKPKGRKKDDARGRGRGRGVVERA 108
>gi|323348917|gb|EGA83154.1| Lsm4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 187
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN---- 60
+P+ LL A+G + E NG++ +G L ++ MN +++VT + + N
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNXESS 61
Query: 61 -------IYIRGSKIRFLILPD 75
IYIRG+ I+F+ L D
Sbjct: 62 KAVKXNEIYIRGTFIKFIKLQD 83
>gi|605651|gb|AAA58257.1| regulatory protein [Saccharomyces cerevisiae]
gi|190405674|gb|EDV08941.1| U6 snRNA associated protein [Saccharomyces cerevisiae RM11-1a]
gi|207345878|gb|EDZ72558.1| YER112Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271267|gb|EEU06342.1| Lsm4p [Saccharomyces cerevisiae JAY291]
gi|323309425|gb|EGA62642.1| Lsm4p [Saccharomyces cerevisiae FostersO]
gi|323333783|gb|EGA75174.1| Lsm4p [Saccharomyces cerevisiae AWRI796]
gi|323355304|gb|EGA87129.1| Lsm4p [Saccharomyces cerevisiae VL3]
gi|349577787|dbj|GAA22955.1| K7_Lsm4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299814|gb|EIW10906.1| Lsm4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 187
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN---- 60
+P+ LL A+G + E NG++ +G L ++ MN +++VT + + N
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESS 61
Query: 61 -------IYIRGSKIRFLILPD 75
IYIRG+ I+F+ L D
Sbjct: 62 KAVKLNEIYIRGTFIKFIKLQD 83
>gi|398364697|ref|NP_011037.3| Lsm4p [Saccharomyces cerevisiae S288c]
gi|731503|sp|P40070.1|LSM4_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|603351|gb|AAC03210.1| Uss1p: core protein of small nuclear ribonucleoprotein
[Saccharomyces cerevisiae]
gi|695736|emb|CAA57975.1| USS1 [Saccharomyces cerevisiae]
gi|285811744|tpg|DAA07772.1| TPA: Lsm4p [Saccharomyces cerevisiae S288c]
Length = 187
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN---- 60
+P+ LL A+G + E NG++ +G L ++ MN +++VT + + N
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESS 61
Query: 61 -------IYIRGSKIRFLILPD 75
IYIRG+ I+F+ L D
Sbjct: 62 KAVKLNEIYIRGTFIKFIKLQD 83
>gi|323337992|gb|EGA79231.1| Lsm4p [Saccharomyces cerevisiae Vin13]
Length = 187
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN---- 60
+P+ LL A+G + E NG++ +G L ++ MN +++VT + + N
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESS 61
Query: 61 -------IYIRGSKIRFLILPD 75
IYIRG+ I+F+ L D
Sbjct: 62 KAVKLNEIYIRGTFIKFIKLQD 83
>gi|259146036|emb|CAY79296.1| Lsm4p [Saccharomyces cerevisiae EC1118]
Length = 187
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN---- 60
+P+ LL A+G + E NG++ +G L ++ MN +++VT + + N
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNVESS 61
Query: 61 -------IYIRGSKIRFLILPD 75
IYIRG+ I+F+ L D
Sbjct: 62 KAVKSNEIYIRGTFIKFIKLQD 83
>gi|403412301|emb|CCL99001.1| predicted protein [Fibroporia radiculosa]
Length = 743
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN + V +T R+ + + ++ IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKMTARNREPTSLDSLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ +LPD L
Sbjct: 64 NIRYFVLPDAL 74
>gi|50309757|ref|XP_454891.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|15072878|emb|CAC48005.1| hypothetical protein [Kluyveromyces lactis]
gi|49644026|emb|CAG99978.1| KLLA0E20813p [Kluyveromyces lactis]
Length = 183
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIR 64
+P+ LL A+G + E NG+ G L + ++ MN +++VT G+ + + Y++
Sbjct: 2 LPLYLLTNAKGQTMHVELKNGETVEGTLSDVDNWMNLTLSNVT-HVASGETLKLPSFYLK 60
Query: 65 GSKIRFLILPD 75
GS I+++ L D
Sbjct: 61 GSFIKYVNLQD 71
>gi|259479587|tpe|CBF69945.1| TPA: U6 snRNA-associated Sm-like protein LSM4, putative
(AFU_orthologue; AFUA_2G12020) [Aspergillus nidulans
FGSC A4]
Length = 119
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G L ++ MN + +V T +G + + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILREVVQTSPEGDRFFKLPEVYV 61
Query: 64 RGSKIRFLILP----DMLK 78
RG+ I++L +P DM+K
Sbjct: 62 RGNNIKYLRIPEEIIDMVK 80
>gi|448536329|ref|XP_003871097.1| hypothetical protein CORT_0G02940 [Candida orthopsilosis Co
90-125]
gi|380355453|emb|CCG24972.1| hypothetical protein CORT_0G02940 [Candida orthopsilosis]
Length = 155
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ I E G+ + G L + MN + +V T DG + + IYI
Sbjct: 2 LPLYLLTAAKNQPILVELKTGETYNGNLTNCDSWMNLTLHEVIQTNADGDEFAKLPEIYI 61
Query: 64 RGSKIRFLILPDML 77
+G I++L +PD +
Sbjct: 62 KGMHIKYLRIPDQI 75
>gi|116192449|ref|XP_001222037.1| hypothetical protein CHGG_05942 [Chaetomium globosum CBS 148.51]
gi|88181855|gb|EAQ89323.1| hypothetical protein CHGG_05942 [Chaetomium globosum CBS 148.51]
Length = 125
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ +V +T R + + + +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQEPIHLETLNVRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|358391553|gb|EHK40957.1| hypothetical protein TRIATDRAFT_301687 [Trichoderma atroviride
IMI 206040]
Length = 120
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T R + + IRGS
Sbjct: 4 VRFLMKCSNETVTVELKNGTIVHGTISSVSPQMNVALRTVKMTARGQDSLALDTMNIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|401626033|gb|EJS44001.1| lsm4p [Saccharomyces arboricola H-6]
Length = 179
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTV-----------TFRDG 53
+P+ LL A+G + E NG++ +G L ++ MN +++VT +
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGTLTNVDNWMNLTLSNVTEYSGESAINSENNAENN 61
Query: 54 KVKPMANIYIRGSKIRFLILPD 75
K + IY+RG+ I+F+ L D
Sbjct: 62 KAVKLNEIYVRGTFIKFIKLQD 83
>gi|342874370|gb|EGU76384.1| hypothetical protein FOXB_13062 [Fusarium oxysporum Fo5176]
Length = 123
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + + + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTISSVSPQMNTALRTVKMTIKGQEPISLETMNIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|339250640|ref|XP_003374305.1| putative LSM domain protein [Trichinella spiralis]
gi|316969411|gb|EFV53512.1| putative LSM domain protein [Trichinella spiralis]
Length = 154
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 6 PIKLLH---EAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
PIKL+H +T E NG + G + + MN + V +T +DG+ + +
Sbjct: 32 PIKLVHFLMNLSRETVTIELKNGTILHGTVTGVDIAMNTHLRAVKMTMKDGETVQLDVMS 91
Query: 63 IRGSKIRFLILPD 75
+RG+ IR+ ILPD
Sbjct: 92 VRGNNIRYFILPD 104
>gi|209877859|ref|XP_002140371.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209555977|gb|EEA06022.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ ++ A H I E NG+ + G L+ + MN + +V T +DG + M+ Y+
Sbjct: 3 LPLSVIRSANKHSIMVELKNGETYSGMLIGVDGFMNLVLNNVISTSKDGQRFFRMSECYL 62
Query: 64 RGSKIRFLILPD 75
RG+ I+++ + D
Sbjct: 63 RGNNIKYIRMND 74
>gi|323305273|gb|EGA59020.1| Lsm4p [Saccharomyces cerevisiae FostersB]
Length = 187
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN---- 60
+P+ LL A G + E NG++ +G L ++ MN +++VT + + N
Sbjct: 2 LPLYLLTNAXGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESS 61
Query: 61 -------IYIRGSKIRFLILPD 75
IYIRG+ I+F+ L D
Sbjct: 62 KAVKLNEIYIRGTFIKFIKLQD 83
>gi|312077152|ref|XP_003141177.1| hypothetical protein LOAG_05592 [Loa loa]
gi|307763656|gb|EFO22890.1| hypothetical protein LOAG_05592 [Loa loa]
Length = 147
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L +T E NG + G + + MN + V +T ++ K + + +RG+
Sbjct: 13 MRFLMRLHDKFVTIELKNGTVVTGYVSGVDMAMNFHLNRVGMTLKNQKPVSLDAVSVRGN 72
Query: 67 KIRFLILPD------MLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGG 120
IR++I P+ ++ + P K + K + RG+S +R Q G RGG RG
Sbjct: 73 NIRYIIFPNNLNLDALMIDVPQQKART-RKTPSQPRGQSNAIRGQ---GVTRGG---RGR 125
Query: 121 RGGWGGPSR 129
G GP R
Sbjct: 126 NSGKFGPCR 134
>gi|378731678|gb|EHY58137.1| small nuclear ribonucleoprotein D1 [Exophiala dermatitidis
NIH/UT8656]
Length = 130
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD-------GKVKPMAN 60
+ L + +T E NG + G + MN A+ V +T ++ G+ +
Sbjct: 4 RFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRAVKMTTKNRSSPSAPGETISLDT 63
Query: 61 IYIRGSKIRFLILPDMLKNAPMF---KGKQGNKAGAAGRG 97
I IRGS IR+ ILPD L + + K NKA G G
Sbjct: 64 INIRGSTIRYFILPDSLPLDTLLIDDQPKPKNKARKEGDG 103
>gi|365761122|gb|EHN02798.1| Lsm4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 177
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN---- 60
+P+ LL A+G + E NG++ +G L ++ MN +++VT + + N
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGTLTNVDNWMNLTLSNVTEYSEENAIDSENNADKS 61
Query: 61 -------IYIRGSKIRFLILPD 75
IY+RG+ I+F+ L D
Sbjct: 62 KAIKLNEIYVRGTFIKFIKLQD 83
>gi|164657680|ref|XP_001729966.1| hypothetical protein MGL_2952 [Malassezia globosa CBS 7966]
gi|159103860|gb|EDP42752.1| hypothetical protein MGL_2952 [Malassezia globosa CBS 7966]
Length = 120
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN + V +T R G+ + + IRG+
Sbjct: 4 VRFLMKLNNESVTIELKNGTVIHGTVTGVDVQMNTHLKAVKMTVRGGEPISLDTLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKA 91
R+ ILPD ++ +AP KGK+ ++A
Sbjct: 64 NTRYWILPDALPLDTLLVDDAPRPKGKRKDEA 95
>gi|170041265|ref|XP_001848390.1| small nuclear ribonucleoprotein sm [Culex quinquefasciatus]
gi|167864864|gb|EDS28247.1| small nuclear ribonucleoprotein sm [Culex quinquefasciatus]
Length = 156
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPD 75
E NG+ + G LV + MN + +V T +DG K M YIRGS I++L +PD
Sbjct: 5 ELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPECYIRGSTIKYLRIPD 60
>gi|353242003|emb|CCA73778.1| related to U6 snRNA-associated Sm-like protein LSm4
[Piriformospora indica DSM 11827]
Length = 126
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P LL A+G + E NG+ F G L++ + MN + +V T D + + +YI
Sbjct: 2 LPSSLLKAAQGKPMMVELKNGESFNGHLIDCDAFMNITLREVYQTAADSDRFWKLKEVYI 61
Query: 64 RGSKIRFL-ILPDML 77
RGS I++L + P +L
Sbjct: 62 RGSTIKYLQVQPALL 76
>gi|254578266|ref|XP_002495119.1| ZYRO0B03762p [Zygosaccharomyces rouxii]
gi|238938009|emb|CAR26186.1| ZYRO0B03762p [Zygosaccharomyces rouxii]
Length = 173
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVT------VTFRDGKVKPM 58
+P+ LL A+G ++ E NG++ G+L+ ++ MN +++ + T G K +
Sbjct: 2 LPLYLLTNAKGQQMSIELKNGEIVEGELINVDNWMNVTLSNASQFDNIGTTVSVGPSKEV 61
Query: 59 A---NIYIRGSKIRFLILPDML 77
+YIRG+ I+++ L D +
Sbjct: 62 VKAKEVYIRGTYIKYIRLQDEI 83
>gi|396483691|ref|XP_003841766.1| hypothetical protein LEMA_P096960.1 [Leptosphaeria maculans JN3]
gi|312218341|emb|CBX98287.1| hypothetical protein LEMA_P096960.1 [Leptosphaeria maculans JN3]
Length = 222
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + + +T E NG + G + MN A+ V T + + ++ +RGS
Sbjct: 95 VRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDSMTVRGS 154
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKA 91
IR++ILPD ++ +AP K K +A
Sbjct: 155 TIRYVILPDSLPLDTLLIDDAPKPKNKARKEA 186
>gi|452848080|gb|EME50012.1| hypothetical protein DOTSEDRAFT_68763 [Dothistroma septosporum
NZE10]
Length = 101
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 15 GHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVT--FRDGKVKPMANIYIRGSKIRFLI 72
H +T E N RG L + +N + DV+V + + + N++IRGS +R++
Sbjct: 12 NHEVTVELKNDISIRGTLKSVDQYLNIKLDDVSVVEELKYPHLSSVKNVFIRGSVVRYVH 71
Query: 73 LPDMLKNAPMFKGKQGNKAG-AAGRGKSG 100
LP + + P+ + +A A + K G
Sbjct: 72 LPAVAVDTPLLEDATRREASQTAAKAKQG 100
>gi|121710142|ref|XP_001272687.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
clavatus NRRL 1]
gi|119400837|gb|EAW11261.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
clavatus NRRL 1]
Length = 123
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G ++ MN A+ V +T + + I +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTIISVSPQMNTALRTVKMTPKGRDPISLDTINVRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|212528972|ref|XP_002144643.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
marneffei ATCC 18224]
gi|210074041|gb|EEA28128.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
marneffei ATCC 18224]
Length = 126
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + + I IRGS
Sbjct: 4 VRFLMKCTNETVTIELKNGTILSGTIASVSPQMNTALRTVKMTPKGREPISLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|357623693|gb|EHJ74743.1| small nuclear ribonucleoprotein Sm D1 [Danaus plexippus]
Length = 125
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG + G + + MN + V VT ++ + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNKEELQLETLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ +LPD ++ +AP KGK+
Sbjct: 64 NIRYFLLPDSLPLETLLIDDAPKGKGKR 91
>gi|429859869|gb|ELA34627.1| small nuclear ribonucleoprotein sm d1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 177
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + + IRGS
Sbjct: 59 VRFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMNIRGS 118
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKA 91
IR+ ILPD ++ +AP K K +A
Sbjct: 119 TIRYFILPDSLPLDTLLIDDAPKPKNKARKEA 150
>gi|440640424|gb|ELR10343.1| hypothetical protein GMDG_04725 [Geomyces destructans 20631-21]
Length = 139
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T R + I +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTARGRDPVALDTINLRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|50288171|ref|XP_446514.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525822|emb|CAG59441.1| unnamed protein product [Candida glabrata]
Length = 172
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADV--------TVTFRDGKVK 56
+P+ LL A+G + E NGD+ G+L ++ MN +A+V KV
Sbjct: 2 LPLYLLTNAKGQQMRIELKNGDIVEGELTNVDNWMNLTLANVNEYKGSENNTNLPQVKVV 61
Query: 57 PMANIYIRGSKIRFLILPD 75
IY+RG I+++ L D
Sbjct: 62 KSKEIYVRGVYIKYITLQD 80
>gi|390981143|pdb|4EMH|A Chain A, Crystal Structure Of Splsm4
gi|390981144|pdb|4EMH|B Chain B, Crystal Structure Of Splsm4
gi|390981145|pdb|4EMH|C Chain C, Crystal Structure Of Splsm4
gi|390981146|pdb|4EMH|D Chain D, Crystal Structure Of Splsm4
gi|390981147|pdb|4EMH|E Chain E, Crystal Structure Of Splsm4
gi|390981148|pdb|4EMH|F Chain F, Crystal Structure Of Splsm4
gi|390981149|pdb|4EMH|G Chain G, Crystal Structure Of Splsm4
gi|390981150|pdb|4EMH|H Chain H, Crystal Structure Of Splsm4
gi|390981151|pdb|4EMH|I Chain I, Crystal Structure Of Splsm4
gi|390981152|pdb|4EMH|J Chain J, Crystal Structure Of Splsm4
gi|390981153|pdb|4EMH|K Chain K, Crystal Structure Of Splsm4
gi|390981154|pdb|4EMH|L Chain L, Crystal Structure Of Splsm4
gi|390981155|pdb|4EMH|M Chain M, Crystal Structure Of Splsm4
gi|390981156|pdb|4EMH|N Chain N, Crystal Structure Of Splsm4
gi|390981157|pdb|4EMH|O Chain O, Crystal Structure Of Splsm4
gi|390981158|pdb|4EMH|P Chain P, Crystal Structure Of Splsm4
gi|390981159|pdb|4EMH|Q Chain Q, Crystal Structure Of Splsm4
gi|390981160|pdb|4EMH|R Chain R, Crystal Structure Of Splsm4
gi|390981161|pdb|4EMH|T Chain T, Crystal Structure Of Splsm4
gi|390981162|pdb|4EMH|U Chain U, Crystal Structure Of Splsm4
gi|390981163|pdb|4EMH|V Chain V, Crystal Structure Of Splsm4
gi|390981164|pdb|4EMH|W Chain W, Crystal Structure Of Splsm4
gi|390981165|pdb|4EMH|X Chain X, Crystal Structure Of Splsm4
gi|390981166|pdb|4EMH|Y Chain Y, Crystal Structure Of Splsm4
Length = 105
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ +G I E NG+ F G L ++ N + +V T DG K + YI
Sbjct: 16 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYXNLTLREVIRTXPDGDKFFRLPECYI 75
Query: 64 RGSKIRFLILPD 75
RG+ I++L + D
Sbjct: 76 RGNNIKYLRIQD 87
>gi|219118670|ref|XP_002180103.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408360|gb|EEC48294.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 598
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 17/86 (19%)
Query: 9 LLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTV------------TFRDGKVK 56
LL EG +T E G L+RG L A+ MN + D ++ FR G
Sbjct: 14 LLRHFEGTELTVELKTGRLYRGTLSSADQAMNLTLEDASLLQRLIVNQQHKGAFRRGSSS 73
Query: 57 P-----MANIYIRGSKIRFLILPDML 77
++ ++IRGS IRF+ PD L
Sbjct: 74 AAVPSTLSLVHIRGSTIRFIHFPDQL 99
>gi|291243481|ref|XP_002741624.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like isoform 1 [Saccoglossus kowalevskii]
Length = 118
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG L RG + + +MN + V +T R+ + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTLVRGTITGVDVSMNTHLKAVKMTVRNKDPVQIDTLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|290984572|ref|XP_002675001.1| predicted protein [Naegleria gruberi]
gi|284088594|gb|EFC42257.1| predicted protein [Naegleria gruberi]
Length = 130
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPDMLKN 79
E NG+ F G L + MN + DVT T RDG + M +YIRG ++++ + D + N
Sbjct: 4 ELKNGETFNGTLTNCDQFMNMNLEDVTCTSRDGTRFWKMDKVYIRGYTLKYIRILDEIIN 63
>gi|367042806|ref|XP_003651783.1| hypothetical protein THITE_2112439 [Thielavia terrestris NRRL
8126]
gi|346999045|gb|AEO65447.1| hypothetical protein THITE_2112439 [Thielavia terrestris NRRL
8126]
Length = 121
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ +V +T + + + +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTVVHGTIASVSPQMNTALRNVKMTPKGQDAISLETLNVRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|389609361|dbj|BAM18292.1| small ribonucleoprotein particle protein SmD1 [Papilio xuthus]
Length = 125
Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG + G + + MN + V VT ++ + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNKEELQLETLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ +LPD +L +AP +GK+
Sbjct: 64 NIRYYLLPDSLPIETLLLDDAPKGRGKR 91
>gi|295673314|ref|XP_002797203.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|225681042|gb|EEH19326.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides
brasiliensis Pb03]
gi|226282575|gb|EEH38141.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226292265|gb|EEH47685.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides
brasiliensis Pb18]
Length = 121
Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + I IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTTKGRDPISLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|119193324|ref|XP_001247268.1| hypothetical protein CIMG_01039 [Coccidioides immitis RS]
gi|258574579|ref|XP_002541471.1| hypothetical protein UREG_00987 [Uncinocarpus reesii 1704]
gi|303312169|ref|XP_003066096.1| small nuclear ribonucleoprotein Sm D1, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|237901737|gb|EEP76138.1| hypothetical protein UREG_00987 [Uncinocarpus reesii 1704]
gi|240105758|gb|EER23951.1| small nuclear ribonucleoprotein Sm D1, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320040082|gb|EFW22016.1| small nuclear ribonucleoprotein SmD1 [Coccidioides posadasii str.
Silveira]
gi|392863489|gb|EAS35757.2| small nuclear ribonucleoprotein Sm D1 [Coccidioides immitis RS]
Length = 120
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + + I IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGREPISLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|50759758|ref|XP_417768.1| PREDICTED: LSM10, U7 small nuclear RNA associated [Gallus gallus]
Length = 123
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+ I ++ LH GH+ T + + G++ + MN +A+VT T R G+V + I
Sbjct: 16 SLVILLQGLH---GHVTTVDLRDESTATGRVANVDAFMNMRLAEVTFTDRRGEVSQLDEI 72
Query: 62 YIRGSKIRFLILPD 75
++ G +R++ +PD
Sbjct: 73 FVTGRNVRYVHIPD 86
>gi|348519431|ref|XP_003447234.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 1
[Oreochromis niloticus]
gi|348519433|ref|XP_003447235.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 2
[Oreochromis niloticus]
Length = 140
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+ LL +G + T + N RG++V + MN + DV R G++ + +++I G
Sbjct: 36 VILLQGLQGEVTTVDLRNESTARGRVVNVDAFMNIRLEDVLYRDRRGQLTQLQDLFITGR 95
Query: 67 KIRFLILPDML 77
IR++ +PD +
Sbjct: 96 NIRYVHIPDHM 106
>gi|409074771|gb|EKM75161.1| hypothetical protein AGABI1DRAFT_80275 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 122
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG L G + + MN + V +T R+ + + + ++ IRG+
Sbjct: 4 VRFLMKLNNETVTVELKNGSLVHGTITGVDMQMNTHLKTVKMTTRNREPQTLDSLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ LPD ++ +AP KG++
Sbjct: 64 NIRYFTLPDALPLDTLLVDDAPKPKGRK 91
>gi|358378050|gb|EHK15733.1| hypothetical protein TRIVIDRAFT_64379 [Trichoderma virens Gv29-8]
Length = 120
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T R + + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTISSVTPQMNVALRTVKMTARGQDSIALDTMNIRGS 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAG 92
IR+ ILPD ++ +AP K K +A
Sbjct: 64 TIRYFILPDSLPLDTLLIDDAPKPKNKARKEAD 96
>gi|397630129|gb|EJK69651.1| hypothetical protein THAOC_09069 [Thalassiosira oceanica]
Length = 116
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 28/34 (82%)
Query: 51 RDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFK 84
+ G+ + + +Y+RGS+I F++LP+ML++APMF+
Sbjct: 15 KQGEKRNVEQMYVRGSEITFIVLPEMLRHAPMFQ 48
>gi|399949948|gb|AFP65604.1| small nuclear ribonucleoprotein D1 [Chroomonas mesostigmatica
CCMP1168]
Length = 90
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDML 77
+T E NG G +V+ + +MN + T + + +++IRG+KIR++ILP+
Sbjct: 15 VTIELKNGVYISGLIVDIDKHMNIYFKNAKRTLNERNTIFIDHMFIRGNKIRYIILPNWF 74
Query: 78 K-NAPMFKGKQG 88
++ FK KQ
Sbjct: 75 NFDSVFFKSKQN 86
>gi|452004429|gb|EMD96885.1| hypothetical protein COCHEDRAFT_1163040 [Cochliobolus
heterostrophus C5]
Length = 130
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + + +T E NG + G + MN A+ V T + + + +RGS
Sbjct: 4 VRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTVRGS 63
Query: 67 KIRFLILPDML 77
IR++ILPD L
Sbjct: 64 TIRYIILPDSL 74
>gi|451855386|gb|EMD68678.1| hypothetical protein COCSADRAFT_157089 [Cochliobolus sativus
ND90Pr]
Length = 131
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + + +T E NG + G + MN A+ V T + + + +RGS
Sbjct: 4 VRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTVRGS 63
Query: 67 KIRFLILPDML 77
IR++ILPD L
Sbjct: 64 TIRYIILPDSL 74
>gi|71422435|ref|XP_812132.1| small nuclear ribonucleoprotein [Trypanosoma cruzi strain CL
Brener]
gi|71424809|ref|XP_812917.1| small nuclear ribonucleoprotein [Trypanosoma cruzi strain CL
Brener]
gi|70876875|gb|EAN90281.1| small nuclear ribonucleoprotein, putative [Trypanosoma cruzi]
gi|70877751|gb|EAN91066.1| small nuclear ribonucleoprotein, putative [Trypanosoma cruzi]
Length = 98
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 9 LLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI-RGSK 67
L + G ++ E N + G++ E +MN M V +T + GK A Y+ RG+
Sbjct: 12 FLQQLRGTLVEIELLNSSIVSGEITFVEPSMNTHMRHVKITAK-GKNPVQAETYVVRGNS 70
Query: 68 IRFLILPDMLKNAPMFKGKQGNKAGAAGR 96
IRF+ILP+ + + NKA AA +
Sbjct: 71 IRFVILPEAMNTDDVL-----NKATAAQK 94
>gi|344303431|gb|EGW33680.1| hypothetical protein SPAPADRAFT_59049 [Spathaspora passalidarum
NRRL Y-27907]
Length = 123
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 10 LHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVT--FRDGKVKPMANIYIRGSK 67
+ + +T E NG G L+ +MN ++ +V + +D + + I IRG++
Sbjct: 10 IPNSTNQPLTVELKNGTTINGTLMSCSPSMNLSLKNVKLQQPLQDATL--LQFINIRGNQ 67
Query: 68 IRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGGR 121
IR ++LPD L N K K G G S A+ A R G P RGG+
Sbjct: 68 IRQILLPDEL-NIDSILAKSVTKIKKQGAGPS----AKPATTNKRAGGPMRGGK 116
>gi|443922492|gb|ELU41935.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G L + MN + +V +T R+ + + + IRG+
Sbjct: 4 VRFLMKLNNETVTVELKNGSVVHGTLTGVDVQMNTHLKNVKLTSRNREPTALDTLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ +LPD L
Sbjct: 64 NIRYFVLPDAL 74
>gi|380495060|emb|CCF32683.1| small nuclear ribonucleoprotein Sm D1 [Colletotrichum
higginsianum]
Length = 124
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMNIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|310793785|gb|EFQ29246.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 124
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMNIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|453089853|gb|EMF17893.1| U6 snRNA-associated Sm-like protein LSm2 [Mycosphaerella populorum
SO2202]
Length = 100
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 15 GHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVT--FRDGKVKPMANIYIRGSKIRFLI 72
H IT E N RG L + +N + D++V + + + N++IRGS +R++
Sbjct: 12 NHEITVELKNDISIRGTLKSVDQYLNIKLDDISVVEELKYPHLSSVKNVFIRGSVVRYVH 71
Query: 73 LPDMLKNAPMFKGKQGNKAG-AAGRGKSG 100
LP + P+ + +A A + K+G
Sbjct: 72 LPAAAVDTPLLEDATRREASQTAAKAKAG 100
>gi|242764900|ref|XP_002340864.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
stipitatus ATCC 10500]
gi|218724060|gb|EED23477.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
stipitatus ATCC 10500]
Length = 124
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + + I IRGS
Sbjct: 4 VRFLMKCMNETVTIELKNGTILSGTIASVSPQMNTALRTVKMTPKGREPISLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|322693984|gb|EFY85827.1| small nuclear ribonucleoprotein Sm D1 [Metarhizium acridum CQMa
102]
gi|322708999|gb|EFZ00576.1| small nuclear ribonucleoprotein Sm D1 [Metarhizium anisopliae
ARSEF 23]
Length = 121
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T R + + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTISSVSPQMNTALRTVKMTPRGQDPISLDTMNIRGS 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKA 91
IR+ ILPD ++ +AP K K +A
Sbjct: 64 TIRYFILPDSLPLDTLLIDDAPKPKNKARKEA 95
>gi|315050300|ref|XP_003174524.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma gypseum CBS
118893]
gi|327303162|ref|XP_003236273.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton rubrum CBS
118892]
gi|311339839|gb|EFQ99041.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma gypseum CBS
118893]
gi|326461615|gb|EGD87068.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton rubrum CBS
118892]
gi|326471350|gb|EGD95359.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton tonsurans CBS
112818]
Length = 125
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + +I IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGRDPISLDSINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|296813285|ref|XP_002846980.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma otae CBS
113480]
gi|238842236|gb|EEQ31898.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma otae CBS
113480]
Length = 125
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + +I IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGRDPISLDSINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|221055864|ref|XP_002259070.1| U6 snRNA associated Sm-like protein Ls [Plasmodium knowlesi
strain H]
gi|193809141|emb|CAQ39843.1| U6 snRNA associated Sm-like protein Ls,putative [Plasmodium
knowlesi strain H]
Length = 126
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
P+ LL ++ + E NG+ + G LV + MN M ++ T +DG K ++ Y+
Sbjct: 3 FPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYV 62
Query: 64 RGSKIRFLILPD 75
RG+ ++++ + D
Sbjct: 63 RGNSVKYIRVQD 74
>gi|154281585|ref|XP_001541605.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411784|gb|EDN07172.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|225563163|gb|EEH11442.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces capsulatus
G186AR]
Length = 123
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + I IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTAKGRDPISLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|406867718|gb|EKD20756.1| small nuclear ribonucleoprotein Sm D1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 128
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T R + I +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTQRGRDPISLDTINLRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|402902787|ref|XP_003914277.1| PREDICTED: uncharacterized protein LOC101001281 [Papio anubis]
Length = 266
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 112 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 171
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 172 NIRYFILPDSL 182
>gi|346324354|gb|EGX93951.1| small nuclear ribonucleoprotein Sm D1 [Cordyceps militaris CM01]
Length = 119
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T R + + + IRGS
Sbjct: 4 VRFLMKCVNEPVTIELKNGTIVNGTISSVTPQMNTALRTVKMTPRGQEPISLDTMNIRGS 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAGAAG 95
IR+ ILPD ++ +AP K K +A A
Sbjct: 64 TIRYFILPDSLPLDTLLVDDAPKPKNKARKEAERAS 99
>gi|428164901|gb|EKX33911.1| hypothetical protein GUITHDRAFT_98209 [Guillardia theta CCMP2712]
Length = 125
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPD 75
E NG+ + G LV + MN ++ DV T RDG K + YIRG+ I++L +PD
Sbjct: 4 ELKNGETYNGILVNCDIWMNLSLRDVVCTSRDGDKFWKIPECYIRGNNIKYLRVPD 59
>gi|398389859|ref|XP_003848390.1| hypothetical protein MYCGRDRAFT_63742 [Zymoseptoria tritici
IPO323]
gi|339468265|gb|EGP83366.1| hypothetical protein MYCGRDRAFT_63742 [Zymoseptoria tritici
IPO323]
Length = 133
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E G + +G + MN + + +T R G + ++ IRGS
Sbjct: 4 VRFLMKCTNETVTIELKTGTIVQGTIASISPQMNTNLRNAKMTPRGGSQIALEHVSIRGS 63
Query: 67 KIRFLILPDML 77
+IR+ ILPD L
Sbjct: 64 EIRYYILPDSL 74
>gi|115399152|ref|XP_001215165.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus terreus
NIH2624]
gi|114192048|gb|EAU33748.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus terreus
NIH2624]
Length = 121
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + I IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTPKGRDPISLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|171684873|ref|XP_001907378.1| hypothetical protein [Podospora anserina S mat+]
gi|170942397|emb|CAP68049.1| unnamed protein product [Podospora anserina S mat+]
Length = 125
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + + +T E G + G + MN A+ +V +T R + + + +RGS
Sbjct: 4 VRFLMKCQNESVTIELKGGTIISGTIASVSPQMNTALRNVKMTPRGQETIQLETLNVRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|255932631|ref|XP_002557872.1| Pc12g10510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582491|emb|CAP80678.1| Pc12g10510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 123
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G +V MN ++ V +T + + I +RGS
Sbjct: 4 VRFLMKCANETVTVELKNGTILHGTIVSVSPQMNTSLRAVKMTPKGRDPVSLDTINVRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|134109199|ref|XP_776714.1| hypothetical protein CNBC2050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259394|gb|EAL22067.1| hypothetical protein CNBC2050 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 147
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+G + E NG F G LVE + MN + +V T DG + M ++I
Sbjct: 2 LPLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFI 61
Query: 64 RGSKIRFLILPD 75
+G+ I++ + D
Sbjct: 62 KGNIIKYFRIAD 73
>gi|261195138|ref|XP_002623973.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
SLH14081]
gi|239587845|gb|EEQ70488.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
SLH14081]
gi|239610667|gb|EEQ87654.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
ER-3]
Length = 123
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + I IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTPKGRDPISLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|56758868|gb|AAW27574.1| unknown [Schistosoma japonicum]
gi|226468946|emb|CAX76501.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226472888|emb|CAX71130.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 118
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN M VT+T ++ + + +RG+
Sbjct: 1 MKLSHET----VTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTVRGN 56
Query: 67 KIRFLILPDML 77
IR+ ILP+ L
Sbjct: 57 NIRYFILPESL 67
>gi|363755190|ref|XP_003647810.1| hypothetical protein Ecym_7144 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891846|gb|AET40993.1| hypothetical protein Ecym_7144 [Eremothecium cymbalariae
DBVPG#7215]
Length = 189
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 26/153 (16%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIR 64
+P+ LL A+G + E NG+ G+L ++ MN + +V V +V + IY+R
Sbjct: 2 LPLYLLTNAKGQRMLVELKNGETIEGELTNVDNWMNVTLGNV-VHKGGEQVLELPEIYVR 60
Query: 65 GSKIRFLILPDMLKN---APMFKGKQGNKAG---AAGRGKSGILRAQA------------ 106
GS I+++ L D + + + GK G+ G R + G R +
Sbjct: 61 GSVIKYIKLQDDIIDKVKQQLNSGKDGSSNGNGPHQNRDRDGNRRYNSRRDNGGGNNGGG 120
Query: 107 -------ARGRGRGGPPQRGGRGGWGGPSRGGR 132
R RG G +RGG G + GGR
Sbjct: 121 RFHHHDYQRKRGGGNFQRRGGGDGQYSSNNGGR 153
>gi|357017089|gb|AET50573.1| hypothetical protein [Eimeria tenella]
Length = 125
Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + E NG + G +V + MN + +V +T + M ++ IRGS
Sbjct: 4 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|260944226|ref|XP_002616411.1| hypothetical protein CLUG_03652 [Clavispora lusitaniae ATCC
42720]
gi|238850060|gb|EEQ39524.1| hypothetical protein CLUG_03652 [Clavispora lusitaniae ATCC
42720]
Length = 71
Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPD 75
I E NG+ GKL + MN +++V + G K + IYIRGS I++L LPD
Sbjct: 10 ILVELKNGETVIGKLSNCDSWMNLTLSNVVHNYNKGEKFNKIEEIYIRGSHIKYLRLPD 68
>gi|392562210|gb|EIW55391.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 122
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN + V +T R+ + + ++ IRG+
Sbjct: 4 VRFLMKLNNETVTVELKNGSVIHGTITGVDMQMNTHLKTVKMTARNREPTSLDSLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ +LPD L
Sbjct: 64 NIRYFVLPDAL 74
>gi|440290998|gb|ELP84297.1| proteasome subunit beta type-3, putative [Entamoeba invadens IP1]
Length = 265
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+ +PI LL A+G I E NG+ + G L + + MN + D + DGK +A I
Sbjct: 185 VELPINLLENAQGKTIVLELKNGNKYTGTLEKCDRMMNLHVKDSVLIQPDGKKFKVAKII 244
Query: 63 IRGSKIR-FLILPDMLKNA 80
++G +R F + ++LK +
Sbjct: 245 VKGMAVRCFAVDGELLKKS 263
>gi|72005990|ref|XP_785584.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Strongylocentrotus purpuratus]
Length = 132
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + ++ IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKSVKLTPKNRETQQLESLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|340513813|gb|EGR44094.1| predicted protein [Trichoderma reesei QM6a]
Length = 120
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T R + + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIAHGTISSVTPQMNVALRTVKMTARGQDSIALDTMNIRGS 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAG 92
IR+ ILPD ++ +AP K K +A
Sbjct: 64 TIRYFILPDSLPLDTLLIDDAPKPKNKARKEAD 96
>gi|72391282|ref|XP_845935.1| small nuclear ribonucleoprotein SmD1 [Trypanosoma brucei TREU927]
gi|9837174|gb|AAG00461.1|AF280393_1 Sm-D1 [Trypanosoma brucei]
gi|62175276|gb|AAX69421.1| small nuclear ribonucleoprotein SmD1 [Trypanosoma brucei]
gi|70802471|gb|AAZ12376.1| small nuclear ribonucleoprotein SmD1 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261329420|emb|CBH12401.1| SmD-1 like small nuclear ribonucleoprotein,putative [Trypanosoma
brucei gambiense DAL972]
Length = 106
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY-IRG 65
I L + G + E N + G++ E NMN M V +T + GK MA Y + G
Sbjct: 10 IGFLQQLRGTQVEIEMMNSTIVTGEITFVEANMNTYMRHVKITAK-GKNPEMAETYMVCG 68
Query: 66 SKIRFLILPD 75
SKIR++ILP+
Sbjct: 69 SKIRYVILPE 78
>gi|426195101|gb|EKV45031.1| hypothetical protein AGABI2DRAFT_73218, partial [Agaricus
bisporus var. bisporus H97]
Length = 118
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSK 67
+ L + +T E NG L G + + MN + V +T R+ + + + ++ IRG+
Sbjct: 1 RFLMKLNNETVTVELKNGSLVHGTITGVDMQMNTHLKTVKMTTRNREPQTLDSLSIRGNN 60
Query: 68 IRFLILPD-------MLKNAPMFKGKQ 87
IR+ LPD ++ +AP KG++
Sbjct: 61 IRYFTLPDALPLDTLLVDDAPKPKGRK 87
>gi|298709372|emb|CBJ31306.1| Small nuclear ribonucleoprotein-associated protein D1 [Ectocarpus
siliculosus]
Length = 107
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG G + + +MN + +V VT + ++ IRG+
Sbjct: 4 VRFLMKMNNETVTVELKNGTTVHGTVASVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGN-KAGAAGRGK 98
IR ILPD ++ +AP K K G K GA GRG+
Sbjct: 64 NIRCYILPDNLNLDQLLIDDAP--KQKPGKVKDGARGRGR 101
>gi|358339785|dbj|GAA47780.1| small nuclear ribonucleoprotein D1 [Clonorchis sinensis]
Length = 124
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + VTVT ++ + + + +RG+
Sbjct: 8 MKLSHET----VTMELKNGTQVHGSIAGVDVSMNTHLRSVTVTLKNRESMNLDTLTVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILP+ L
Sbjct: 64 NIRYFILPESL 74
>gi|340372719|ref|XP_003384891.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Amphimedon queenslandica]
Length = 136
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 19 TCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPD 75
T E N +G +V +D MN ++ + DG V N++I+GS+IR++ +PD
Sbjct: 26 TVELRNEITIKGTIVNVDDKMNTTISGAEYKYLDGTVMNCENLFIQGSQIRYVHIPD 82
>gi|400602721|gb|EJP70323.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 119
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T R + + IRGS
Sbjct: 4 VRFLMKCVNEPVTIELKNGTIVNGTISSVTPQMNTALRTVKMTPRGQDPISLDTMNIRGS 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAGAAG 95
IR+ ILPD ++ +AP K K +A A
Sbjct: 64 TIRYFILPDSLPLDTLLVDDAPKPKNKARKEAERAS 99
>gi|114050791|ref|NP_001040404.1| small nuclear ribonucleoprotein Sm D1 [Bombyx mori]
gi|95102768|gb|ABF51325.1| small nuclear ribonucleoprotein Sm D1 [Bombyx mori]
Length = 126
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG + G + + MN + V VT ++ + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ +LPD L
Sbjct: 64 NIRYYLLPDSL 74
>gi|453080718|gb|EMF08768.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 132
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E G + +G + MN + + +T + G + ++ IRGS
Sbjct: 4 VRFLMKCSNETVTIELKTGTIVQGTIASVSPQMNTNLRNAKMTPKGGSQISLDHVSIRGS 63
Query: 67 KIRFLILPDML 77
+IR+ ILPD L
Sbjct: 64 EIRYYILPDSL 74
>gi|226468938|emb|CAX76497.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226468940|emb|CAX76498.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226468942|emb|CAX76499.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226468944|emb|CAX76500.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226472890|emb|CAX71131.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226472892|emb|CAX71132.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 125
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN M VT+T ++ + + +RG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILP+ L
Sbjct: 64 NIRYFILPESL 74
>gi|422295210|gb|EKU22509.1| small nuclear ribonucleoprotein D1, partial [Nannochloropsis
gaditana CCMP526]
Length = 108
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG +G + + +MN + +V VT + ++ IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDAL 74
>gi|410966946|ref|XP_003989986.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Felis catus]
Length = 244
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL +G + T + + + RG++ + MN +A+VT T R G + ++++ G
Sbjct: 139 IILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 198
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 199 NVRYVHIPD 207
>gi|303277487|ref|XP_003058037.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460694|gb|EEH57988.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 116
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + T E NG + G ++ + +MN + +V +T + M ++ +RG+
Sbjct: 4 VRFLQKLSHETCTIELKNGTVVHGTIMGVDISMNTHLKNVKMTLKGKNPVSMDHLSVRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNK 90
IR+ ILPD ++ + P K K G K
Sbjct: 64 NIRYYILPDSLNLDTLLVDDTPKIKSKPGAK 94
>gi|56757319|gb|AAW26831.1| SJCHGC01415 protein [Schistosoma japonicum]
gi|226468936|emb|CAX76496.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 127
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN M VT+T ++ + + +RG+
Sbjct: 10 MKLSHET----VTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTVRGN 65
Query: 67 KIRFLILPDML 77
IR+ ILP+ L
Sbjct: 66 NIRYFILPESL 76
>gi|452837979|gb|EME39920.1| hypothetical protein DOTSEDRAFT_74704 [Dothistroma septosporum
NZE10]
Length = 131
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E G + +G + MN + + +T + G + +I IRGS
Sbjct: 4 VRFLMKCTNETVTIELKTGTIVQGTVASVSPQMNTNLRNAKMTPKGGSQISLDHISIRGS 63
Query: 67 KIRFLILPDML 77
+IR+ ILPD L
Sbjct: 64 EIRYYILPDSL 74
>gi|443897891|dbj|GAC75230.1| small nuclear ribonucleoprotein SMD1 and related snRNPs
[Pseudozyma antarctica T-34]
Length = 124
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + MN + V +T R + + IRG+
Sbjct: 4 VRFLMKLNNESVSIELKNGTVVHGTVTGVDIQMNTHLKTVKMTVRGRPAVTLDTLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAG 92
IR+ ILPD ++ +AP KGK+ + A
Sbjct: 64 NIRYWILPDALPLDMLLVDDAPKPKGKRKDPAA 96
>gi|328862810|gb|EGG11910.1| hypothetical protein MELLADRAFT_32687 [Melampsora larici-populina
98AG31]
Length = 113
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDML 77
+T E NG + G + + MN + V +T R+ + + + ++ IRGS IR+ ILPD L
Sbjct: 12 VTVELKNGTVIHGTISGVDVAMNTHLKAVKMTVRNREPQQLDSLSIRGSNIRYFILPDSL 71
>gi|299742717|ref|XP_001832694.2| small nuclear riboprotein Sm-D [Coprinopsis cinerea okayama7#130]
gi|298405314|gb|EAU89114.2| small nuclear riboprotein Sm-D [Coprinopsis cinerea okayama7#130]
Length = 136
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M G+ L + +T E NG + G + + MN + V +T R+ + +
Sbjct: 14 MRDGVMNAFLMKLNNETVTIELKNGAVVHGTITGVDMQMNTFLKTVKMTMRNREPTSLDT 73
Query: 61 IYIRGSKIRFLILPDML 77
+ IRG+ IR+ ILPD L
Sbjct: 74 LSIRGNNIRYFILPDAL 90
>gi|170596751|ref|XP_001902883.1| Sm protein [Brugia malayi]
gi|158589165|gb|EDP28269.1| Sm protein [Brugia malayi]
Length = 130
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 17 IITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDM 76
+T E NG + G + + MN + V++T + K + + IRG+ IR++I P+
Sbjct: 7 FVTIELKNGTVVMGYVSSVDLAMNFHLNRVSMTLKSEKPASVDAVSIRGNNIRYIIFPNN 66
Query: 77 LK-NAPMF----KGKQGNKAGAAGRGKSGILRAQAARGRGRGGP 115
L +A M + ++ K + +R R GRGGP
Sbjct: 67 LNLDALMIDIPQQTRRTRKTSGQAHSQGVAVRGGRDRNSGRGGP 110
>gi|401884158|gb|EJT48330.1| hypothetical protein A1Q1_02613 [Trichosporon asahii var. asahii
CBS 2479]
Length = 264
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKP----MANIY 62
++ L + +T E NG + G + + MN + V ++ R+ + +I
Sbjct: 146 VRFLMKLNNETVTIELKNGSVIHGTITSVDPQMNTHLKSVKMSLRNAAPNTPSTHLDSIA 205
Query: 63 IRGSKIRFLILPDML 77
IRG+ IR+ ILPD L
Sbjct: 206 IRGNNIRYFILPDSL 220
>gi|302923356|ref|XP_003053658.1| hypothetical protein NECHADRAFT_75034 [Nectria haematococca mpVI
77-13-4]
gi|256734599|gb|EEU47945.1| hypothetical protein NECHADRAFT_75034 [Nectria haematococca mpVI
77-13-4]
Length = 114
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 15 GHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILP 74
+T E NG + G + MN A+ +V +T + + + IRGS IR+ ILP
Sbjct: 5 NETVTIELKNGTIVHGTISSVSPQMNTALRNVKMTIKGQDPVSLDTMNIRGSTIRYFILP 64
Query: 75 DML 77
D L
Sbjct: 65 DSL 67
>gi|169770091|ref|XP_001819515.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus oryzae RIB40]
gi|238487546|ref|XP_002375011.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
flavus NRRL3357]
gi|83767374|dbj|BAE57513.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699890|gb|EED56229.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
flavus NRRL3357]
gi|391864024|gb|EIT73322.1| small nuclear ribonucleoprotein [Aspergillus oryzae 3.042]
Length = 123
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN ++ V +T + + I IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|449457365|ref|XP_004146419.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 138
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG 50
>gi|302692404|ref|XP_003035881.1| hypothetical protein SCHCODRAFT_74336 [Schizophyllum commune
H4-8]
gi|300109577|gb|EFJ00979.1| hypothetical protein SCHCODRAFT_74336 [Schizophyllum commune
H4-8]
Length = 121
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + MN + V +T R+ + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGSVVHGTITGVDMQMNTHLKTVKMTTRNRDPTHLDSLSLRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAG 92
IR+ ILPD ++ +AP KGK+ A
Sbjct: 64 TIRYFILPDALPLDTLLVDDAPKPKGKRKEDAA 96
>gi|254574234|ref|XP_002494226.1| hypothetical protein [Komagataella pastoris GS115]
gi|238034025|emb|CAY72047.1| Hypothetical protein PAS_chr4_0781 [Komagataella pastoris GS115]
gi|328353953|emb|CCA40350.1| Probable small nuclear ribonucleoprotein Sm D1 [Komagataella
pastoris CBS 7435]
Length = 115
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + + E NG + G ++ +MN + +V +T R+ + I IRG+
Sbjct: 4 VRFLMKLISEQVQVELKNGTIVSGTIISVTPSMNINLKNVKMTVRNRNPVSLEFINIRGN 63
Query: 67 KIRFLILPDML 77
+R +ILPD L
Sbjct: 64 NVRIVILPDNL 74
>gi|407920870|gb|EKG14049.1| Protein-tyrosine phosphatase receptor/non-receptor type
[Macrophomina phaseolina MS6]
Length = 1134
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPD-MLK 78
E NG+ G LV ++ MN + +V T DG + + +YIRG+ I++L +PD ++
Sbjct: 4 ELKNGETLNGHLVNCDNWMNLTLKEVVQTSPDGDRFWRLPEVYIRGNNIKYLRVPDEIID 63
Query: 79 NAPMFKGKQGNK 90
+P+ QG+K
Sbjct: 64 LSPVRFTAQGSK 75
>gi|339250642|ref|XP_003374306.1| putative LSM domain protein [Trichinella spiralis]
gi|316969410|gb|EFV53511.1| putative LSM domain protein [Trichinella spiralis]
Length = 120
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG + G + + MN + V +T +DG+ + + +RG+
Sbjct: 8 MKLSHET----VTIELKNGTILHGTISGVDVAMNTHLRAVKMTLKDGQTVQLDVLSVRGN 63
Query: 67 KIRFLILPD 75
IR+ ILP+
Sbjct: 64 NIRYFILPE 72
>gi|389747560|gb|EIM88738.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 123
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN + V +T R+ + ++ IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTARNRDPSSLDSLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ +LPD L
Sbjct: 64 NIRYFVLPDSL 74
>gi|145243932|ref|XP_001394478.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus niger CBS
513.88]
gi|134079163|emb|CAK40691.1| unnamed protein product [Aspergillus niger]
gi|350631277|gb|EHA19648.1| hypothetical protein ASPNIDRAFT_47972 [Aspergillus niger ATCC
1015]
gi|358367165|dbj|GAA83784.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus kawachii IFO
4308]
Length = 121
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN ++ V +T + + I IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|67523297|ref|XP_659709.1| hypothetical protein AN2105.2 [Aspergillus nidulans FGSC A4]
gi|40745781|gb|EAA64937.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259487477|tpe|CBF86187.1| TPA: small nuclear ribonucleoprotein SmD1, putative
(AFU_orthologue; AFUA_2G05110) [Aspergillus nidulans
FGSC A4]
Length = 121
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN ++ V +T + + I IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|226468934|emb|CAX76495.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 101
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN M VT+T ++ + + +RG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILP+ L
Sbjct: 64 NIRYFILPESL 74
>gi|326933035|ref|XP_003212615.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Meleagris gallopavo]
Length = 123
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+ LL GH+ T + + G++ + MN +A VT T R G V + I++ G
Sbjct: 18 VILLQGLHGHVTTVDLRDESTATGRVANVDAFMNMRLAQVTFTDRRGVVSQLDEIFVAGR 77
Query: 67 KIRFLILPDML 77
+R++ +PD +
Sbjct: 78 NVRYVHIPDQV 88
>gi|409048487|gb|EKM57965.1| hypothetical protein PHACADRAFT_251891 [Phanerochaete carnosa
HHB-10118-sp]
Length = 122
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN + V +T R+ + ++ IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTARNRDPTSLDSLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ +LPD L
Sbjct: 64 NIRYFVLPDAL 74
>gi|405118247|gb|AFR93021.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii
H99]
Length = 129
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD--GKVKPMA--NIY 62
++ L + +T E NG + G + + MN + V +T R P++ +I
Sbjct: 4 VRFLMKLNNETVTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLDSIA 63
Query: 63 IRGSKIRFLILPDML 77
IRG+ IR+ ILPD L
Sbjct: 64 IRGNNIRYFILPDSL 78
>gi|448080879|ref|XP_004194749.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
gi|359376171|emb|CCE86753.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
Length = 130
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ I E NG+ G+LV + MN + +V +G + Y+
Sbjct: 2 LPLYLLTSAKNQPILVELKNGETLNGELVNCDSWMNLTLNNVVQVSENGTNFLKLPECYV 61
Query: 64 RGSKIRFLILPDML 77
RG+ I+++ LP+ L
Sbjct: 62 RGNHIKYMRLPEEL 75
>gi|325087346|gb|EGC40656.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus H88]
Length = 148
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 15 GHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG--KVKPMANIYIRGSKIRFLI 72
H +T E N RG L + +N + D+ V D + + NI++RGS +R+++
Sbjct: 62 NHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDEYPHLSSVKNIFVRGSVVRYIV 121
Query: 73 LP 74
LP
Sbjct: 122 LP 123
>gi|342181938|emb|CCC91417.1| small nuclear ribonucleoprotein SmD1 [Trypanosoma congolense
IL3000]
Length = 106
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY-IRG 65
I L + G + E N + G++ E NMN M V +T + GK M + Y + G
Sbjct: 10 IGFLQQLRGTQVEIEMMNSTIATGEITFVEPNMNTHMRHVKITAK-GKNPEMVDTYMVCG 68
Query: 66 SKIRFLILP------DMLKNAPMFKGKQGNK 90
SKIR++I+P D+L A K ++G K
Sbjct: 69 SKIRYVIMPEAINTDDVLLKANSAKSREGRK 99
>gi|313226324|emb|CBY21468.1| unnamed protein product [Oikopleura dioica]
gi|313241294|emb|CBY33571.1| unnamed protein product [Oikopleura dioica]
Length = 127
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + +V +T + + + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVVGTIAGVDICMNTHLKNVRLTVKGREPQQLDALSIRGN 63
Query: 67 KIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGP 115
IR+ ILPD + + G KA G + RGRGRG P
Sbjct: 64 NIRYYILPDSVPLDTLLI-DDGPKARGGGSTRD--------RGRGRGKP 103
>gi|170095247|ref|XP_001878844.1| small nuclear ribonucleoprotein SnRNP [Laccaria bicolor
S238N-H82]
gi|164646148|gb|EDR10394.1| small nuclear ribonucleoprotein SnRNP [Laccaria bicolor
S238N-H82]
Length = 127
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN + V +T R+ + ++ IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGCIVHGTITGVDMQMNTHLKTVKMTMRNRDPTTLDSLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKA 91
+R+ +LPD ++ +AP KG++ A
Sbjct: 64 TVRYFVLPDALPLDTLLVDDAPKPKGRKKEDA 95
>gi|428673180|gb|EKX74093.1| small ribonucleoprotein D1, putative [Babesia equi]
Length = 119
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G ++ + +MN + +V + +D V + ++ +RG+
Sbjct: 4 VRFLMKLANESVTLELKNGTVMTGTIIGIDISMNTHLKNVKIVKKDNSVILLDHLTVRGN 63
Query: 67 KIRFLILPD 75
IR+ +LPD
Sbjct: 64 SIRYYLLPD 72
>gi|159107444|ref|XP_001704002.1| Small nuclear ribonucleoprotein Sm D3, putative [Giardia lamblia
ATCC 50803]
gi|157432048|gb|EDO76328.1| Small nuclear ribonucleoprotein Sm D3, putative [Giardia lamblia
ATCC 50803]
Length = 62
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVT 49
M+I PI+LL EA ++ ET G ++ GKLV E ++ +++ T+T
Sbjct: 1 MTITAPIQLLFEAIDMCVSVETRTGSIYEGKLVSVEPTLSVTISNCTIT 49
>gi|388583883|gb|EIM24184.1| Sm-like ribonucleo protein, partial [Wallemia sebi CBS 633.66]
Length = 115
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDML 77
+T E NG + G ++ + +MN + V + R+ + I IRG+ IR++ILPD L
Sbjct: 8 VTIELKNGSVVHGTMINCDPSMNAHLRSVKLITRNLPACNLDTISIRGNNIRYVILPDSL 67
>gi|361127598|gb|EHK99561.1| putative U6 snRNA-associated Sm-like protein LSm4 [Glarea
lozoyensis 74030]
Length = 115
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ G LV + MN + +V T DG K + +Y+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVTCDTWMNLTLKEVVQTSPDGDKFYRLPEVYV 61
Query: 64 RGSKIR 69
+G+ R
Sbjct: 62 KGNNSR 67
>gi|344287217|ref|XP_003415351.1| PREDICTED: hypothetical protein LOC100665419 [Loxodonta africana]
Length = 258
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL +G + T + + + RG++ + MN +A+VT T R G + ++++ G
Sbjct: 18 IILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
>gi|342184170|emb|CCC93651.1| putative small nuclear ribonucleoprotein [Trypanosoma congolense
IL3000]
Length = 131
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCA-----MADVTVTFRDGKVKPM 58
IP + E+ ++ ETT+ + G+L + M+C + DV RD +
Sbjct: 6 DIPCHAVRESTNLVVKVETTDDCTYVGRLTK----MDCTHGDMELVDVRCQHRDSSLSVE 61
Query: 59 ANIYIRGSKIRFLILPDMLKNAPMF 83
+ ++GS +R + LP LK AP
Sbjct: 62 GRVLLKGSSVRIVHLPSDLKRAPFL 86
>gi|448082775|ref|XP_004195217.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
gi|359376639|emb|CCE87221.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
Length = 129
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDML 77
+T E NG G+++ +MN +M +V + + + + IRG++IR +ILPD L
Sbjct: 18 VTLELKNGSSINGQILSCSPSMNISMKNVKLIRPHQDPQLLQYMNIRGNQIRLVILPDDL 77
Query: 78 -------KNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGG 120
K+A KG QG AG + +GI + A GR + P RGG
Sbjct: 78 NIDSVLAKSAVTIKG-QG--AGPGSQSTNGI-GTKGAMGRNKRAP--RGG 121
>gi|452978143|gb|EME77907.1| hypothetical protein MYCFIDRAFT_57424 [Pseudocercospora fijiensis
CIRAD86]
Length = 129
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E G + +G + MN + + +T + G + +I +RGS
Sbjct: 4 VRFLMKCTNETVTIELKTGTIVQGTIASVSPQMNTNLRNAKMTPKGGSQISLDHISVRGS 63
Query: 67 KIRFLILPDML 77
+IR+ ILPD L
Sbjct: 64 EIRYYILPDSL 74
>gi|355721054|gb|AES07137.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Mustela
putorius furo]
Length = 139
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 28 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 83
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 84 NIRYFILPDSL 94
>gi|448085360|ref|XP_004195840.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
gi|359377262|emb|CCE85645.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
Length = 126
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ I E NG+ G+LV + MN + +V +G + Y+
Sbjct: 2 LPLYLLTSAKNQPILVELKNGETLNGELVNCDSWMNLTLNNVIQVSANGTNFLKLPECYV 61
Query: 64 RGSKIRFLILPDML 77
RG+ I+++ LP+ L
Sbjct: 62 RGNHIKYMRLPEEL 75
>gi|157822899|ref|NP_001102446.1| U7 snRNA-associated Sm-like protein LSm10 [Rattus norvegicus]
gi|149023943|gb|EDL80440.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|149023944|gb|EDL80441.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|149023945|gb|EDL80442.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|187469116|gb|AAI66902.1| Lsm10 protein [Rattus norvegicus]
Length = 122
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL +G I T + + + RG++ + MN +A+VT T R G + ++++ G
Sbjct: 18 IILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
>gi|258597219|ref|XP_001347757.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
gi|254832602|gb|AAN35670.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
Length = 126
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
P+ LL ++ + E NG+ + G LV + MN M ++ T +DG K ++ Y+
Sbjct: 3 FPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYV 62
Query: 64 RGSKIRFLILPD 75
RG+ I+++ + D
Sbjct: 63 RGNSIKYIRVQD 74
>gi|168034120|ref|XP_001769561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679103|gb|EDQ65554.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMA--NIYIR 64
++ L + ++ E NG + G + + +MN M V +T + GKV P+A ++ IR
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHMKSVKLTLK-GKV-PVALDHLSIR 61
Query: 65 GSKIRFLILPDML 77
G+ IR+ ILPD L
Sbjct: 62 GNNIRYYILPDSL 74
>gi|146322817|ref|XP_749642.2| small nuclear ribonucleoprotein SmD1 [Aspergillus fumigatus
Af293]
gi|129556817|gb|EAL87604.2| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
fumigatus Af293]
gi|159129049|gb|EDP54163.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
fumigatus A1163]
Length = 120
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN ++ V +T + + I IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITAVSPQMNTSLRTVKMTPKGRDPISLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|119480211|ref|XP_001260134.1| small nuclear ribonucleoprotein SmD1, putative [Neosartorya
fischeri NRRL 181]
gi|119408288|gb|EAW18237.1| small nuclear ribonucleoprotein SmD1, putative [Neosartorya
fischeri NRRL 181]
Length = 121
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN ++ V +T + + I IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITAVSPQMNTSLRTVKMTPKGRDPISLDTINIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|70606592|ref|YP_255462.1| Sm-like protein [Sulfolobus acidocaldarius DSM 639]
gi|449066813|ref|YP_007433895.1| Sm-like protein [Sulfolobus acidocaldarius N8]
gi|449069085|ref|YP_007436166.1| Sm-like protein [Sulfolobus acidocaldarius Ron12/I]
gi|68567240|gb|AAY80169.1| Sm-like protein [Sulfolobus acidocaldarius DSM 639]
gi|449035321|gb|AGE70747.1| Sm-like protein [Sulfolobus acidocaldarius N8]
gi|449037593|gb|AGE73018.1| Sm-like protein [Sulfolobus acidocaldarius Ron12/I]
Length = 87
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 6 PIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN---IY 62
P+K L A I+ + NG+ + G+L +++ MN + D T +R+G P+A +
Sbjct: 8 PLKSLKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCT-EYREGTSDPVAKYGRVL 66
Query: 63 IRGSKIRFL 71
IRGS I F+
Sbjct: 67 IRGSNILFI 75
>gi|388854491|emb|CCF51878.1| probable small nuclear ribonucleoprotein SNRPD1 [Ustilago hordei]
Length = 134
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN + V +T R + + IRG+
Sbjct: 4 VRFLMKLNNESVTIELKNGTVVHGSVTGVDIQMNTHLKTVKMTLRGRPAVALDTLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD ++ +AP KGK+
Sbjct: 64 NIRYWILPDALPLDMLLVDDAPKPKGKR 91
>gi|389583620|dbj|GAB66354.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium cynomolgi
strain B]
Length = 153
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
P+ LL ++ + E NG+ + G LV + MN M ++ T +DG K ++ Y+
Sbjct: 30 FPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYV 89
Query: 64 RGSKIRFLILPD 75
RG+ ++++ + D
Sbjct: 90 RGNSVKYIRVQD 101
>gi|20270251|ref|NP_620046.1| U7 snRNA-associated Sm-like protein LSm10 [Mus musculus]
gi|253795523|ref|NP_001156738.1| U7 snRNA-associated Sm-like protein LSm10 [Mus musculus]
gi|52783143|sp|Q8QZX5.1|LSM10_MOUSE RecName: Full=U7 snRNA-associated Sm-like protein LSm10
gi|19354497|gb|AAH24543.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
gi|20071449|gb|AAH26476.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
gi|74228609|dbj|BAE25378.1| unnamed protein product [Mus musculus]
gi|148698363|gb|EDL30310.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
Length = 122
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL +G I T + + + RG++ + MN +A+VT T R G + ++++ G
Sbjct: 18 IILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
>gi|27545253|ref|NP_775359.1| small nuclear ribonucleoprotein Sm D1 [Danio rerio]
gi|21105451|gb|AAM34669.1|AF506225_1 small nuclear ribonucleoprotein D1 [Danio rerio]
gi|47938075|gb|AAH71543.1| Snrpd1 protein [Danio rerio]
Length = 119
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + ++ IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|291394184|ref|XP_002713641.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like [Oryctolagus cuniculus]
Length = 236
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 125 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 180
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 181 NIRYFILPDSL 191
>gi|388854881|emb|CCF51562.1| probable small nuclear ribonucleoprotein SNRPD1 [Ustilago hordei]
Length = 134
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN + V +T R + + IRG+
Sbjct: 4 VRFLMKLNNESVTIELKNGTVVHGTVTGVDIQMNTHLKTVKMTLRGRPAVALDTLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD ++ +AP KGK+
Sbjct: 64 NIRYWILPDALPLDMLLVDDAPKPKGKR 91
>gi|395329081|gb|EJF61470.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 112
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPD-- 75
+T E NG + G + + MN + V +T R+ + + ++ IRG+ IR+ +LPD
Sbjct: 8 VTVELKNGSVIHGTITGVDMQMNTHLKTVKMTARNREPTSLDSLSIRGNNIRYFVLPDAL 67
Query: 76 -----MLKNAPMFKGKQGNKA 91
++ +AP K ++ ++A
Sbjct: 68 PLDTLLVDDAPKPKNRKKDEA 88
>gi|396487975|ref|XP_003842766.1| hypothetical protein LEMA_P085260.1 [Leptosphaeria maculans JN3]
gi|312219343|emb|CBX99287.1| hypothetical protein LEMA_P085260.1 [Leptosphaeria maculans JN3]
Length = 114
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPDM 76
+ E +G+ G L+ + MN + +V T DG K + IY+RGS I++L +PD
Sbjct: 1 MLVELKSGETLNGLLINCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKYLRVPDE 60
Query: 77 LKNAPMFKGKQG-NKAGAAGRG 97
+ + K +Q ++A GRG
Sbjct: 61 I--VDVVKEQQAKDQANRGGRG 80
>gi|302411190|ref|XP_003003428.1| small nuclear ribonucleoprotein Sm D1 [Verticillium albo-atrum
VaMs.102]
gi|261357333|gb|EEY19761.1| small nuclear ribonucleoprotein Sm D1 [Verticillium albo-atrum
VaMs.102]
Length = 121
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVNGTISSVSPQMNTALRIVKMTTKGQDPVALDTMNIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|452821316|gb|EME28348.1| small nuclear ribonucleoprotein D1 [Galdieria sulphuraria]
Length = 122
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSK 67
+ L + +T E NG + +G + + NMN + V +T R + + +RGS
Sbjct: 5 RFLMKLNSETVTVELKNGTVVQGTVTGVDHNMNTTLKAVKMTPRGKNPVTLDAMSLRGST 64
Query: 68 IRFLILPDML 77
IR+ ILP+ L
Sbjct: 65 IRYFILPESL 74
>gi|432105433|gb|ELK31648.1| Small nuclear ribonucleoprotein Sm D1 [Myotis davidii]
Length = 221
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 110 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 165
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 166 NIRYFILPDSL 176
>gi|348513171|ref|XP_003444116.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Oreochromis niloticus]
gi|432883312|ref|XP_004074261.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Oryzias
latipes]
Length = 119
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + ++ IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|19115525|ref|NP_594613.1| Sm snRNP core protein Smd1 [Schizosaccharomyces pombe 972h-]
gi|12230564|sp|O42661.1|SMD1_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|2664241|emb|CAA15826.1| Sm snRNP core protein Smd1 [Schizosaccharomyces pombe]
Length = 117
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + MN + V +T + + P+ + IRG+
Sbjct: 4 VRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|255075581|ref|XP_002501465.1| predicted protein [Micromonas sp. RCC299]
gi|226516729|gb|ACO62723.1| predicted protein [Micromonas sp. RCC299]
Length = 117
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSK 67
KL HE+ +T E NG + G ++ + +MN + +V +T + M ++ +RG+
Sbjct: 9 KLSHES----VTIELKNGTVIAGTIMGVDVSMNTHLKNVKMTLKGKNPVSMDHLSVRGNN 64
Query: 68 IRFLILPDML 77
IR+ ILPD L
Sbjct: 65 IRYYILPDSL 74
>gi|261203087|ref|XP_002628757.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
SLH14081]
gi|239586542|gb|EEQ69185.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
SLH14081]
gi|327349625|gb|EGE78482.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 98
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 15 GHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG--KVKPMANIYIRGSKIRFLI 72
H +T E N RG L + +N + D+ V D + + NI++RGS +R+++
Sbjct: 12 NHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYPHLSSVKNIFVRGSVVRYIV 71
Query: 73 LP 74
LP
Sbjct: 72 LP 73
>gi|296241945|ref|YP_003649432.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296094529|gb|ADG90480.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 91
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 6 PIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMA---NIY 62
P K+L +EG I+ + G + G L ++ MN M++ T +DG KP+A +
Sbjct: 11 PFKILKSSEGQIVLVKIKGGYEYVGNLDLIDNTMNVVMSNCTEYSKDG--KPVARYGKLI 68
Query: 63 IRGSKIRFL 71
IRGS I+++
Sbjct: 69 IRGSHIQYI 77
>gi|346978140|gb|EGY21592.1| small nuclear ribonucleoprotein Sm D1 [Verticillium dahliae
VdLs.17]
Length = 121
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + MN A+ V +T + + + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVNGTISSVSPQMNTALRIVKMTTKGQDPIALDTMNIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|328873443|gb|EGG21810.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 185
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
+ ++ L + +T E NG + G +V + +MN + V +T + + + I
Sbjct: 34 NVTLRFLMKLHNETVTIELKNGTIIHGTIVGVDVSMNTHLKTVKLTLKGKNPINLDTLSI 93
Query: 64 RGSKIRFLILPDML 77
RG+ IR+ ILP+ L
Sbjct: 94 RGNNIRYYILPESL 107
>gi|294654851|ref|XP_456936.2| DEHA2A13948p [Debaryomyces hansenii CBS767]
gi|199429198|emb|CAG84914.2| DEHA2A13948p [Debaryomyces hansenii CBS767]
Length = 131
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 10 LHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIR 69
L A IT E NG+ G+++ +MN +M ++ ++ + + I IRG++IR
Sbjct: 10 LPNATNQPITVELKNGNSINGQILSCSPSMNLSMKNIKLSQPHQDPQLLQFINIRGNQIR 69
Query: 70 FLILPDML 77
++LPD L
Sbjct: 70 QILLPDEL 77
>gi|363730104|ref|XP_001235936.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Gallus gallus]
Length = 112
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 1 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 56
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 57 NIRYFILPDSL 67
>gi|331241854|ref|XP_003333574.1| small nuclear ribonucleoprotein D1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312564|gb|EFP89155.1| small nuclear ribonucleoprotein D1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 122
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I+ L + +T E NG + G + + MN + V +T R+ + + ++ IRGS
Sbjct: 4 IRFLMKLNQETVTIELKNGTVVHGTISGVDVAMNTHLKAVKMTVRNREPVQLDSLSIRGS 63
Query: 67 KIRFLILPDML 77
+R++ILPD L
Sbjct: 64 NVRYIILPDSL 74
>gi|156336212|ref|XP_001619663.1| hypothetical protein NEMVEDRAFT_v1g223956 [Nematostella
vectensis]
gi|156203311|gb|EDO27563.1| predicted protein [Nematostella vectensis]
Length = 128
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG + G + + +MN + V +T ++ + + ++ IRG+
Sbjct: 8 MKLSHET----VTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREPMQLESLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILP+ L
Sbjct: 64 NIRYFILPESL 74
>gi|392589390|gb|EIW78721.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 125
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + MN + V +T R+ + ++ IRG+
Sbjct: 4 VRFLMKLNNETVSIELKNGSVVNGTITGVDMQMNTHLKTVKMTARNRDPTSLDSLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKA 91
IR+++LPD ++ +AP K ++ + A
Sbjct: 64 NIRYIVLPDALPLDTLLVDDAPKPKARKKDDA 95
>gi|224082027|ref|XP_002198423.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Taeniopygia guttata]
Length = 123
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+ LL G + T E + G++ + MN +A+VT T R G V + +++ G
Sbjct: 18 VILLQGLRGRVTTVELRDESAAAGRVTSVDAFMNVRLAEVTFTDRQGAVSQLDELFVTGR 77
Query: 67 KIRFLILPD 75
IR++ +PD
Sbjct: 78 NIRYVHIPD 86
>gi|148691046|gb|EDL22993.1| mCG14669, isoform CRA_b [Mus musculus]
Length = 134
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 23 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 78
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 79 NIRYFILPDSL 89
>gi|291231092|ref|XP_002735494.1| PREDICTED: LSM10, U7 small nuclear RNA associated-like
[Saccoglossus kowalevskii]
Length = 114
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL G E N G + + MN M+DV DG+V ++N +++G
Sbjct: 15 ICLLQALTGKSTVIELRNESTVTGVIDSVDAYMNVFMSDVEFVNADGQVMILSNFFVQGK 74
Query: 67 KIRFLILPD 75
IRF+ +PD
Sbjct: 75 MIRFVQIPD 83
>gi|336274282|ref|XP_003351895.1| hypothetical protein SMAC_00442 [Sordaria macrospora k-hell]
gi|380096178|emb|CCC06225.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 123
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + M+ A+ +V +T + + + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTIASVTPRMDTALRNVKMTPKGQDAVALDAMNIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|363808094|ref|NP_001242473.1| uncharacterized protein LOC100786834 [Glycine max]
gi|255645080|gb|ACU23039.1| unknown [Glycine max]
Length = 138
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPD 75
E NG+ + G LV + MN + +V T +DG + M YIRG+ I++L +PD
Sbjct: 4 ELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 59
>gi|444723132|gb|ELW63794.1| Small nuclear ribonucleoprotein Sm D1 [Tupaia chinensis]
Length = 124
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 1 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 56
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 57 NIRYFILPDSL 67
>gi|332225775|ref|XP_003262059.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Nomascus
leucogenys]
Length = 119
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G ++ + +MN + V +T ++ + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTILGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|281354424|gb|EFB30008.1| hypothetical protein PANDA_018320 [Ailuropoda melanoleuca]
Length = 90
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 4 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 59
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 60 NIRYFILPDSL 70
>gi|225554412|gb|EEH02710.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus
G186AR]
gi|240273447|gb|EER36967.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
Length = 98
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 15 GHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG--KVKPMANIYIRGSKIRFLI 72
H +T E N RG L + +N + D+ V D + + NI++RGS +R+++
Sbjct: 12 NHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDEYPHLSSVKNIFVRGSVVRYIV 71
Query: 73 LP 74
LP
Sbjct: 72 LP 73
>gi|344299688|gb|EGW30041.1| hypothetical protein SPAPADRAFT_57515 [Spathaspora passalidarum
NRRL Y-27907]
Length = 140
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFR-DGKVKPMANIYI 63
+P+ LL A+ + E G+ ++G LV + MN +++V T + +YI
Sbjct: 2 LPLYLLTAAKNKPVLIELKTGETYQGDLVNLDPWMNLTLSNVIHTNTGADEFSKETEVYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKS 99
RG I++L +PD + M K+ N R K+
Sbjct: 62 RGMHIKYLRIPDEI----MDYAKEQNLLNMEQRNKN 93
>gi|440897495|gb|ELR49167.1| hypothetical protein M91_06507, partial [Bos grunniens mutus]
Length = 121
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSK 67
KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 4 KLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNN 59
Query: 68 IRFLILPDML 77
IR+ ILPD L
Sbjct: 60 IRYFILPDSL 69
>gi|351709761|gb|EHB12680.1| Small nuclear ribonucleoprotein Sm D1, partial [Heterocephalus
glaber]
Length = 115
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 4 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 59
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 60 NIRYFILPDSL 70
>gi|312838417|gb|ADR01276.1| small nuclear ribonucleoprotein D3 [Stenodactylus doriae]
gi|312838419|gb|ADR01277.1| small nuclear ribonucleoprotein D3 [Stenodactylus doriae]
gi|312838421|gb|ADR01278.1| small nuclear ribonucleoprotein D3 [Stenodactylus doriae]
gi|312838423|gb|ADR01279.1| small nuclear ribonucleoprotein D3 [Stenodactylus doriae]
gi|312838425|gb|ADR01280.1| small nuclear ribonucleoprotein D3 [Stenodactylus doriae]
gi|312838427|gb|ADR01281.1| small nuclear ribonucleoprotein D3 [Stenodactylus doriae]
gi|312838429|gb|ADR01282.1| small nuclear ribonucleoprotein D3 [Stenodactylus doriae]
gi|312838431|gb|ADR01283.1| small nuclear ribonucleoprotein D3 [Stenodactylus doriae]
gi|312838433|gb|ADR01284.1| small nuclear ribonucleoprotein D3 [Stenodactylus
leptocosymbotes]
gi|312838435|gb|ADR01285.1| small nuclear ribonucleoprotein D3 [Stenodactylus
leptocosymbotes]
gi|312838437|gb|ADR01286.1| small nuclear ribonucleoprotein D3 [Stenodactylus
leptocosymbotes]
gi|312838439|gb|ADR01287.1| small nuclear ribonucleoprotein D3 [Stenodactylus
leptocosymbotes]
gi|312838441|gb|ADR01288.1| small nuclear ribonucleoprotein D3 [Stenodactylus
leptocosymbotes]
gi|312838443|gb|ADR01289.1| small nuclear ribonucleoprotein D3 [Stenodactylus petrii]
gi|312838445|gb|ADR01290.1| small nuclear ribonucleoprotein D3 [Stenodactylus petrii]
gi|312838447|gb|ADR01291.1| small nuclear ribonucleoprotein D3 [Stenodactylus doriae]
gi|312838449|gb|ADR01292.1| small nuclear ribonucleoprotein D3 [Stenodactylus doriae]
gi|312838451|gb|ADR01293.1| small nuclear ribonucleoprotein D3 [Stenodactylus petrii]
gi|312838455|gb|ADR01295.1| small nuclear ribonucleoprotein D3 [Stenodactylus sthenodactylus]
gi|312838457|gb|ADR01296.1| small nuclear ribonucleoprotein D3 [Stenodactylus sthenodactylus]
gi|312838459|gb|ADR01297.1| small nuclear ribonucleoprotein D3 [Stenodactylus khobarensis]
Length = 22
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 21 ETTNGDLFRGKLVEAEDNMNC 41
ET G+++RGKL+EAEDNMNC
Sbjct: 1 ETNTGEVYRGKLIEAEDNMNC 21
>gi|343425727|emb|CBQ69261.1| related to U6 snRNA-associated Sm-like protein LSm4 [Sporisorium
reilianum SRZ2]
Length = 142
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG F G LV ++ MN + +V T G + YI
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGSTFNGHLVACDNFMNLTLREVYETSASGEQFWKQKECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++ + D
Sbjct: 62 RGSTIKYCRVAD 73
>gi|431896295|gb|ELK05711.1| Small nuclear ribonucleoprotein Sm D1 [Pteropus alecto]
Length = 122
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 11 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 66
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 67 NIRYFILPDSL 77
>gi|303388061|ref|XP_003072265.1| small nuclear Sm-like ribonucleoprotein [Encephalitozoon
intestinalis ATCC 50506]
gi|303301404|gb|ADM10905.1| small nuclear Sm-like ribonucleoprotein [Encephalitozoon
intestinalis ATCC 50506]
Length = 99
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I+ L + + + ET G GK+V + MN M D V P++ +RGS
Sbjct: 4 IRFLRKCKNEKVRIETKEGRKVEGKMVSIDKTMNVEMVDAIVD-----ELPVSTYTVRGS 58
Query: 67 KIRFLILPDMLKNAPMF-KGKQGNKAGAAGRGK 98
IR+++ D + P+ + NK G G+
Sbjct: 59 SIRYIMFRDDIDFKPLLIDDRPRNKIKEQGEGR 91
>gi|85112250|ref|XP_964309.1| small nuclear ribonucleoprotein Sm D1 [Neurospora crassa OR74A]
gi|28926086|gb|EAA35073.1| small nuclear ribonucleoprotein Sm D1 [Neurospora crassa OR74A]
Length = 123
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + M+ A+ +V +T + + + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTIASVTPRMDTALRNVKMTPKGQDAVALDAMNIRGS 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYFILPDSL 74
>gi|390599258|gb|EIN08655.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 144
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
+S P + L + +T E NG + G + + MN + V ++ R+ + +
Sbjct: 22 VSFFAPDRFLMKLNNESVTIELKNGSVVHGTITGVDMQMNTHLKTVKMSMRNREPVSLDT 81
Query: 61 IYIRGSKIRFLILPDML 77
+ IRG+ IR+ +LPD L
Sbjct: 82 LSIRGNNIRYFVLPDAL 98
>gi|396080757|gb|AFN82378.1| small nuclear Sm-like ribonucleoprotein [Encephalitozoon romaleae
SJ-2008]
Length = 99
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I+ L + +G + ET G G++ + MN M D V DG P + +RGS
Sbjct: 4 IRFLKKCKGEKVKVETKEGRKIEGRITSVDKTMNVEMEDAVV---DGV--PASTYTVRGS 58
Query: 67 KIRFLILPDMLKNAPMF 83
IR+++ D + P+
Sbjct: 59 SIRYIMFRDDIDFKPLL 75
>gi|149720998|ref|XP_001492698.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Equus
caballus]
Length = 116
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 5 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 60
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 61 NIRYFILPDSL 71
>gi|326922125|ref|XP_003207302.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein
Sm D1-like [Meleagris gallopavo]
Length = 118
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 7 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 62
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 63 NIRYFILPDSL 73
>gi|440903491|gb|ELR54142.1| Small nuclear ribonucleoprotein Sm D1, partial [Bos grunniens
mutus]
Length = 117
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 6 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 61
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 62 NIRYFILPDSL 72
>gi|355701859|gb|EHH29212.1| Small nuclear ribonucleoprotein Sm D1, partial [Macaca mulatta]
gi|355754930|gb|EHH58797.1| Small nuclear ribonucleoprotein Sm D1, partial [Macaca
fascicularis]
Length = 119
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|297602887|ref|NP_001053049.2| Os04g0470200 [Oryza sativa Japonica Group]
gi|38344744|emb|CAE03048.2| OSJNBa0089K21.2 [Oryza sativa Japonica Group]
gi|116310018|emb|CAH67043.1| OSIGBa0124N08.5 [Oryza sativa Indica Group]
gi|222629031|gb|EEE61163.1| hypothetical protein OsJ_15131 [Oryza sativa Japonica Group]
gi|255675540|dbj|BAF14963.2| Os04g0470200 [Oryza sativa Japonica Group]
Length = 114
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD ++++ P K K+
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRVKAKK 91
>gi|242216937|ref|XP_002474272.1| predicted protein [Postia placenta Mad-698-R]
gi|220726564|gb|EED80509.1| predicted protein [Postia placenta Mad-698-R]
Length = 121
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN--IYIR 64
++ L + +T E NG + G + + MN + V +T R+ + PMA+ + IR
Sbjct: 4 VRFLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKLTARNRE--PMAHETLTIR 61
Query: 65 GSKIRFLILPD 75
G+ IR+ +LPD
Sbjct: 62 GNTIRYFVLPD 72
>gi|156098332|ref|XP_001615198.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium vivax Sal-1]
gi|148804072|gb|EDL45471.1| U6 snRNA associated Sm-like protein Lsm4, putative [Plasmodium
vivax]
Length = 127
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
P+ LL ++ + E NG+ + G LV + MN M ++ T +DG K ++ Y+
Sbjct: 3 FPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYV 62
Query: 64 RGSKIRFLILPD 75
RG+ ++++ + D
Sbjct: 63 RGNSVKYIRVQD 74
>gi|322695394|gb|EFY87203.1| small nuclear ribonucleoprotein [Metarhizium acridum CQMa 102]
Length = 106
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF---------RDGKV 55
+P+ LL+ A+GH + E NG+ G LV+ + MN + +V T RDG+
Sbjct: 2 LPLSLLNAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLREVVQTSPVRLTVQSARDGQQ 61
Query: 56 KPMANIYIRGSKI 68
+ ANI RG K
Sbjct: 62 RE-ANIAQRGDKF 73
>gi|307106683|gb|EFN54928.1| hypothetical protein CHLNCDRAFT_14874, partial [Chlorella
variabilis]
Length = 82
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 14 EGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLIL 73
EG + E + RG+L+ A+D +N + + + G+ + +Y++G IRF+ L
Sbjct: 11 EGQRVVVELRYDSIIRGQLLAADDQLNLQLGEASYQALQGERRSCEFLYVKGRHIRFIHL 70
Query: 74 P 74
P
Sbjct: 71 P 71
>gi|301090235|ref|XP_002895342.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans
T30-4]
gi|262100456|gb|EEY58508.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans
T30-4]
Length = 105
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPD-- 75
+T E NG L G + + +MN + V +T + + ++ IRG+ IR+ ILPD
Sbjct: 8 VTIELKNGTLVHGTITGVDISMNTHLKAVKMTVKGKNPVNLDSLSIRGNNIRYYILPDSL 67
Query: 76 -----MLKNAPMFKGKQGNKAGA 93
++ + P K K G AG+
Sbjct: 68 NLDTLLIDDTPREKVKAGAPAGS 90
>gi|449269384|gb|EMC80160.1| Small nuclear ribonucleoprotein Sm D1, partial [Columba livia]
Length = 117
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 6 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 61
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 62 NIRYFILPDSL 72
>gi|5902102|ref|NP_008869.1| small nuclear ribonucleoprotein Sm D1 [Homo sapiens]
gi|6678055|ref|NP_033252.1| small nuclear ribonucleoprotein Sm D1 [Mus musculus]
gi|78050059|ref|NP_001030237.1| small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|157818069|ref|NP_001099633.1| small nuclear ribonucleoprotein Sm D1 [Rattus norvegicus]
gi|350535747|ref|NP_001232444.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|386780612|ref|NP_001247758.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|57089749|ref|XP_537302.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Canis lupus
familiaris]
gi|114672526|ref|XP_512054.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pan
troglodytes]
gi|126321779|ref|XP_001363297.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Monodelphis domestica]
gi|296222369|ref|XP_002757161.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Callithrix
jacchus]
gi|297702359|ref|XP_002828147.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pongo abelii]
gi|301785950|ref|XP_002928390.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Ailuropoda
melanoleuca]
gi|311259030|ref|XP_003127902.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Sus
scrofa]
gi|327282141|ref|XP_003225802.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Anolis
carolinensis]
gi|348576770|ref|XP_003474159.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cavia
porcellus]
gi|354481732|ref|XP_003503055.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cricetulus
griseus]
gi|395511627|ref|XP_003760058.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Sarcophilus
harrisii]
gi|395823105|ref|XP_003784837.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Otolemur
garnettii]
gi|397489347|ref|XP_003815691.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pan paniscus]
gi|403265201|ref|XP_003924835.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 isoform 1
[Saimiri boliviensis boliviensis]
gi|403265203|ref|XP_003924836.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 isoform 2
[Saimiri boliviensis boliviensis]
gi|410977436|ref|XP_003995111.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Felis catus]
gi|426253705|ref|XP_004020533.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Ovis aries]
gi|51338665|sp|P62314.1|SMD1_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=Sm-D autoantigen; AltName: Full=snRNP
core protein D1
gi|60413325|sp|P62315.1|SMD1_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=Sm-D autoantigen; AltName: Full=snRNP
core protein D1
gi|75076018|sp|Q4R5F6.1|SMD1_MACFA RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|109894869|sp|Q3ZC10.1|SMD1_BOVIN RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|6980598|pdb|1B34|A Chain A, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
gi|225734042|pdb|3CW1|B Chain B, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734051|pdb|3CW1|M Chain M, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734060|pdb|3CW1|N Chain N, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734069|pdb|3CW1|O Chain O, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583602|pdb|3PGW|X Chain X, Crystal Structure Of Human U1 Snrnp
gi|315583611|pdb|3PGW|U Chain U, Crystal Structure Of Human U1 Snrnp
gi|332639434|pdb|2Y9A|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639441|pdb|2Y9A|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639448|pdb|2Y9A|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639458|pdb|2Y9B|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639465|pdb|2Y9B|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639472|pdb|2Y9B|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639482|pdb|2Y9C|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639489|pdb|2Y9C|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639496|pdb|2Y9C|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639506|pdb|2Y9D|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639513|pdb|2Y9D|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639520|pdb|2Y9D|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781210|pdb|3S6N|A Chain A, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302196|pdb|4F7U|A Chain A, Macromolecular Machine 6
gi|444302198|pdb|4F7U|C Chain C, Macromolecular Machine 6
gi|453055422|pdb|1VU2|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453055430|pdb|1VU2|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453055438|pdb|1VU2|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453055446|pdb|1VU2|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453055454|pdb|1VU2|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453055462|pdb|1VU2|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453055474|pdb|1VU2|WW Chain w, The 8s Snrnp Assembly Intermediate
gi|453055478|pdb|1VU3|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453055486|pdb|1VU3|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453055494|pdb|1VU3|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453055502|pdb|1VU3|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453055510|pdb|1VU3|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453055518|pdb|1VU3|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453056010|pdb|4F77|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453056018|pdb|4F77|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453056026|pdb|4F77|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453056034|pdb|4F77|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453056042|pdb|4F77|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453056050|pdb|4F77|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453056062|pdb|4F77|WW Chain w, The 8s Snrnp Assembly Intermediate
gi|338265|gb|AAA36620.1| small nuclear riboprotein Sm-D [Homo sapiens]
gi|705366|gb|AAA85339.1| small nuclear ribonucleoprotein [Homo sapiens]
gi|1256741|gb|AAA96493.1| Sm-D autoantigen [Mus musculus]
gi|12804599|gb|AAH01721.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|12838127|dbj|BAB24092.1| unnamed protein product [Mus musculus]
gi|12841366|dbj|BAB25178.1| unnamed protein product [Mus musculus]
gi|12847588|dbj|BAB27628.1| unnamed protein product [Mus musculus]
gi|12850214|dbj|BAB28635.1| unnamed protein product [Mus musculus]
gi|19354162|gb|AAH24875.1| Small nuclear ribonucleoprotein D1 [Mus musculus]
gi|48734707|gb|AAH72427.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|49457472|emb|CAG47035.1| SNRPD1 [Homo sapiens]
gi|67970653|dbj|BAE01669.1| unnamed protein product [Macaca fascicularis]
gi|73586929|gb|AAI02988.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Bos taurus]
gi|74144965|dbj|BAE22192.1| unnamed protein product [Mus musculus]
gi|74193588|dbj|BAE22759.1| unnamed protein product [Mus musculus]
gi|119621535|gb|EAX01130.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|149031722|gb|EDL86672.1| small nuclear ribonucleoprotein D1 (predicted) [Rattus
norvegicus]
gi|187469818|gb|AAI67095.1| Small nuclear ribonucleoprotein D1 [Rattus norvegicus]
gi|197127450|gb|ACH43948.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197127451|gb|ACH43949.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197129948|gb|ACH46446.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197692155|dbj|BAG70041.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|197692401|dbj|BAG70164.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|208967432|dbj|BAG73730.1| small nuclear ribonucleoprotein D1 polypeptide [synthetic
construct]
gi|296473819|tpg|DAA15934.1| TPA: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|344251470|gb|EGW07574.1| Small nuclear ribonucleoprotein Sm D1 [Cricetulus griseus]
gi|380815842|gb|AFE79795.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|383420995|gb|AFH33711.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|384948966|gb|AFI38088.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|410215894|gb|JAA05166.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410253718|gb|JAA14826.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410297902|gb|JAA27551.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410328399|gb|JAA33146.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
Length = 119
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|384246803|gb|EIE20292.1| hypothetical protein COCSUDRAFT_58002 [Coccomyxa subellipsoidea
C-169]
Length = 144
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 14 EGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLIL 73
EG + E N + RG L A++ MN + T G + M ++++G++IR++ L
Sbjct: 22 EGLNVVVELHNDAVVRGMLESADEGMNMIINGATYEPLQGSAQAMDFLFVKGARIRYVHL 81
Query: 74 PDMLKNAPMFKGKQGNKAGA 93
P + A + KQ A A
Sbjct: 82 PAKMNAATRVEDKQKEAAEA 101
>gi|388855373|emb|CCF51037.1| related to U6 snRNA-associated Sm-like protein LSm4 [Ustilago
hordei]
Length = 149
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E NG F G LV ++ MN + +V T G + YI
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGSTFNGHLVACDNFMNLTLREVYETSASGEQFWKQKECYI 61
Query: 64 RGSKIRFLILPD 75
RGS I++ + D
Sbjct: 62 RGSTIKYCRVAD 73
>gi|326511932|dbj|BAJ95947.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 114
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG G ++ + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTVHGTIIGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|164657129|ref|XP_001729691.1| hypothetical protein MGL_3235 [Malassezia globosa CBS 7966]
gi|159103584|gb|EDP42477.1| hypothetical protein MGL_3235 [Malassezia globosa CBS 7966]
Length = 86
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A I E N + F G LV ++ MN M DV T G + M +YI
Sbjct: 2 LPLTLLNAAHDGPILVELKNSETFNGHLVACDNYMNITMRDVFQTSSSGEQFWKMPEVYI 61
Query: 64 RGSKI 68
+GS +
Sbjct: 62 KGSTV 66
>gi|388516873|gb|AFK46498.1| unknown [Lotus japonicus]
Length = 115
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPVTLDHLSVRGT 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD +++ AP K K+
Sbjct: 64 NIRYYILPDSLNLETLLVEEAPRVKSKK 91
>gi|395830185|ref|XP_003788215.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform 1
[Otolemur garnettii]
gi|395830187|ref|XP_003788216.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform 2
[Otolemur garnettii]
Length = 123
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL +G + T + + + RG++ + MN +A+VT T R G + ++++ G
Sbjct: 18 IILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRRGHQVELDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
>gi|325186130|emb|CCA20631.1| unnamed protein product putative [Albugo laibachii Nc14]
Length = 143
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 21 ETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPDML 77
E NGD + G + MN + DV T +DG + M YIRG+ ++++ +P+ +
Sbjct: 4 ELKNGDTYNGHFKNCDTWMNINLCDVICTSKDGDRFWKMPECYIRGNTVKYVRVPNEI 61
>gi|296473074|tpg|DAA15189.1| TPA: small nuclear ribonucleoprotein D1 polypeptide 16kDa-like
[Bos taurus]
Length = 119
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + +MN + V +T ++ + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITCVNVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|149694668|ref|XP_001499097.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Equus
caballus]
Length = 123
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL +G + T + + + RG++ + MN +A+VT T R G + ++++ G
Sbjct: 18 IILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
>gi|60832252|gb|AAX37003.1| small nuclear ribonucleoprotein D1 polypeptide [synthetic
construct]
Length = 120
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|388583911|gb|EIM24212.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 126
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ A+ + E +G+ F G L+ ++ MN + V T DG + + Y+
Sbjct: 2 LPLTLLNGAQNKPLLVELKSGETFNGHLIACDNYMNLTLKQVFQTNADGERFWKLPECYL 61
Query: 64 RGSKIRFLILPDML 77
RG+ I+++ + D L
Sbjct: 62 RGNTIKYIRVADEL 75
>gi|321252513|ref|XP_003192431.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|317458899|gb|ADV20644.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
Length = 121
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD--GKVKPMA--NIYIRGSKIRFLIL 73
+T E NG + G + + MN + V +T R P++ +I IRG+ IR+ IL
Sbjct: 8 VTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLDSIAIRGNNIRYFIL 67
Query: 74 PDML 77
PD L
Sbjct: 68 PDSL 71
>gi|58262702|ref|XP_568761.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|134108736|ref|XP_777021.1| hypothetical protein CNBB5470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259704|gb|EAL22374.1| hypothetical protein CNBB5470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223411|gb|AAW41454.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 121
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD--GKVKPMA--NIYIRGSKIRFLIL 73
+T E NG + G + + MN + V +T R P++ +I IRG+ IR+ IL
Sbjct: 8 VTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLDSIAIRGNNIRYFIL 67
Query: 74 PDML 77
PD L
Sbjct: 68 PDSL 71
>gi|224082029|ref|XP_002198421.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Taeniopygia guttata]
Length = 123
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+ LL G + T E + G++ + MN +A+VT T R G V + +++ G
Sbjct: 18 VILLQGLRGRVTTVELRDESAAAGRVTSVDAFMNVRLAEVTFTDRRGAVSQLDELFVTGR 77
Query: 67 KIRFLILPD 75
IR++ +PD
Sbjct: 78 NIRYVHIPD 86
>gi|52345462|ref|NP_001004780.1| small nuclear ribonucleoprotein Sm D1 [Xenopus (Silurana)
tropicalis]
gi|148227202|ref|NP_001085322.1| small nuclear ribonucleoprotein Sm D1 [Xenopus laevis]
gi|49250837|gb|AAH74514.1| MGC69276 protein [Xenopus (Silurana) tropicalis]
gi|49255946|gb|AAH71069.1| MGC78968 protein [Xenopus laevis]
gi|76779906|gb|AAI06262.1| MGC78968 protein [Xenopus laevis]
gi|118835457|gb|AAI28954.1| MGC78968 protein [Xenopus laevis]
Length = 119
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 8 MKLSHET----VTVELKNGTQVHGTITGVDVSMNTHLKAVKMTVKNREPVQLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|449304089|gb|EMD00097.1| hypothetical protein BAUCODRAFT_30555 [Baudoinia compniacensis
UAMH 10762]
Length = 130
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E G + G + MN + +T + G + I IRGS
Sbjct: 4 VRFLMKCTNETVTIELKTGAIVHGTIASVSPQMNTNLRAAKMTPKGGSQISLDQISIRGS 63
Query: 67 KIRFLILPDML 77
+IR+ ILPD L
Sbjct: 64 EIRYFILPDSL 74
>gi|428671714|gb|EKX72629.1| U6 snRNA-associated protein, putative [Babesia equi]
Length = 111
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGK-VKPMANIYI 63
+P+ LL + E NG+ + G L + MN M +V T + G + YI
Sbjct: 3 LPLTLLRAGKNQPTLIELKNGETYSGILESCDAFMNIHMLNVVCTSKSGTDFWKLNECYI 62
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGA---AGRGKSGIL 102
RG+ ++ L LP+ + + K K A +GRG+ +L
Sbjct: 63 RGNNVKSLRLPNEVAELAKEESKPAAKPNAVAYSGRGRGKVL 104
>gi|242065592|ref|XP_002454085.1| hypothetical protein SORBIDRAFT_04g024330 [Sorghum bicolor]
gi|195604664|gb|ACG24162.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|238011798|gb|ACR36934.1| unknown [Zea mays]
gi|241933916|gb|EES07061.1| hypothetical protein SORBIDRAFT_04g024330 [Sorghum bicolor]
gi|413922841|gb|AFW62773.1| Small nuclear ribonucleoprotein Sm D1 isoform 1 [Zea mays]
gi|413922842|gb|AFW62774.1| Small nuclear ribonucleoprotein Sm D1 isoform 2 [Zea mays]
Length = 114
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|195435704|ref|XP_002065819.1| GK18761 [Drosophila willistoni]
gi|194161904|gb|EDW76805.1| GK18761 [Drosophila willistoni]
Length = 124
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T R+ + ++ IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIRNRDPVHLESLSIRGN 63
Query: 67 KIRFLILPDML 77
+R+ ILPD L
Sbjct: 64 NVRYFILPDSL 74
>gi|344269970|ref|XP_003406820.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Loxodonta
africana]
Length = 133
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 22 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 77
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 78 NIRYFILPDSL 88
>gi|145345472|ref|XP_001417233.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577460|gb|ABO95526.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 114
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG G ++ + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLQKLSNESVTIELKNGTTAHGTIMGVDVSMNTHLKQVKLTLKGKNPTAVEHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>gi|71408300|ref|XP_806563.1| small nuclear ribonucleoprotein [Trypanosoma cruzi strain CL
Brener]
gi|70870344|gb|EAN84712.1| small nuclear ribonucleoprotein, putative [Trypanosoma cruzi]
Length = 131
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 6 PIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNM--NCAMADVTVTFRDGKVKPMANIYI 63
P + + +A G + ET +G ++ GKL D + + ++DV RD + +++
Sbjct: 8 PFRAVMDATGFFVKVETVDGAIYTGKLSRL-DMLHGDVELSDVRCQRRDSSLSIECRVFL 66
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGN 89
+G+ IR + LP ++ A + + N
Sbjct: 67 KGANIRLIHLPSEIRKATYLEWENPN 92
>gi|355700134|gb|AES01351.1| LSM10, U7 small nuclear RNA associated [Mustela putorius furo]
Length = 122
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL +G + T + + + RG++ + MN +A+VT T R G + ++++ G
Sbjct: 18 IILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
>gi|226507836|ref|NP_001151154.1| LOC100284787 [Zea mays]
gi|195644674|gb|ACG41805.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
Length = 116
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|226496545|ref|NP_001148353.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|195618318|gb|ACG30989.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|414586802|tpg|DAA37373.1| TPA: small nuclear ribonucleoprotein Sm D1 [Zea mays]
Length = 115
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|57096594|ref|XP_532561.1| PREDICTED: LSM10, U7 small nuclear RNA associated [Canis lupus
familiaris]
Length = 123
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL +G + T + + + RG++ + MN +A+VT T R G + ++++ G
Sbjct: 18 IILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
>gi|388508844|gb|AFK42488.1| unknown [Medicago truncatula]
Length = 115
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD +++ AP K K+
Sbjct: 64 NIRYYILPDSLNLETLLVEEAPRVKPKK 91
>gi|444706872|gb|ELW48189.1| U7 snRNA-associated Sm-like protein LSm10 [Tupaia chinensis]
Length = 156
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL +G + T + + + RG++ + MN +A VT T R G + ++++ G
Sbjct: 51 IILLQGLQGLVTTVDLRDESVARGRIDNVDAFMNIRLAQVTYTDRWGHQVKLDDLFVTGR 110
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 111 NVRYVHIPD 119
>gi|319411531|emb|CBQ73575.1| probable small nuclear ribonucleoprotein SNRPD1 [Sporisorium
reilianum SRZ2]
Length = 125
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN + V ++ R + + IRG+
Sbjct: 4 VRFLMKLNNESVTIELKNGTVVHGTVTGVDIQMNTHLKTVKMSVRGRPAVTLDTLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGN 89
IR+ ILPD ++ +AP KGK+ +
Sbjct: 64 NIRYWILPDALPLDMLLVDDAPKPKGKRKD 93
>gi|412985751|emb|CCO16951.1| predicted protein [Bathycoccus prasinos]
Length = 158
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+K L + +T E NG G ++ + +MN + V +T + + + ++ IRG+
Sbjct: 40 VKFLQKLNNETVTIELKNGTTCSGTILGVDISMNTHLKSVKLTVKGRNPQTLDHLSIRGN 99
Query: 67 KIRFLILPDML 77
IR+ ILP+ L
Sbjct: 100 TIRYYILPESL 110
>gi|66816135|ref|XP_642077.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|60470206|gb|EAL68186.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 131
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + +G + + +MN + V +T + + + IRG+
Sbjct: 4 VRFLMKLHNETVTIELKNGTIVQGSVAGVDVSMNTHLKTVKLTLKGKNPVNLDTLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILP+ L
Sbjct: 64 NIRYFILPESL 74
>gi|196003304|ref|XP_002111519.1| hypothetical protein TRIADDRAFT_55621 [Trichoplax adhaerens]
gi|190585418|gb|EDV25486.1| hypothetical protein TRIADDRAFT_55621 [Trichoplax adhaerens]
Length = 130
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + +MN + V +T ++ + + + IRG+
Sbjct: 4 VRFLMKINHETVTIELKNGTVVHGTVWGVDMSMNTHLKSVKMTVKNREPVTLDTLAIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD ++ ++P K K+
Sbjct: 64 NIRYFILPDNLALDQLLVDDSPKMKAKK 91
>gi|312838453|gb|ADR01294.1| small nuclear ribonucleoprotein D3 [Stenodactylus arabicus]
Length = 22
Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 21 ETTNGDLFRGKLVEAEDNMNC 41
ET G+++RGKL+E EDNMNC
Sbjct: 1 ETNTGEVYRGKLIEVEDNMNC 21
>gi|150019465|ref|YP_001311719.1| Alpha-glucosidase [Clostridium beijerinckii NCIMB 8052]
gi|149905930|gb|ABR36763.1| Alpha-glucosidase [Clostridium beijerinckii NCIMB 8052]
Length = 836
Score = 38.9 bits (89), Expect = 0.67, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 22 TTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILP------D 75
TT + R L+E +D+ NC D +TF G +AN+ +G+K+R L LP D
Sbjct: 594 TTGKSIMRPLLMEFQDDANC-YDDQYMTFMFGPSVLVANVLEKGAKLRKLYLPEGCTWYD 652
Query: 76 MLKNAPMFKGKQ 87
M N +KG Q
Sbjct: 653 MNNNMAAYKGGQ 664
>gi|449464778|ref|XP_004150106.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis
sativus]
gi|449476727|ref|XP_004154817.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis
sativus]
Length = 114
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + M ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|325188130|emb|CCA22672.1| small nuclear ribonucleoprotein Sm D1 putative [Albugo laibachii
Nc14]
Length = 114
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + +MN + V +T + + + + IRG+
Sbjct: 4 VRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKMTAKGKNPQTLDTLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|115725270|ref|XP_001200318.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Strongylocentrotus purpuratus]
gi|115896565|ref|XP_001200071.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Strongylocentrotus purpuratus]
Length = 124
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+ LL G I T E N G +V+ + MN M+ V DG+ M +I+I+ S
Sbjct: 18 VCLLRAVVGRITTVELRNECSATGYVVDVDGFMNVTMSKVLFVNMDGEKTHMDSIFIQAS 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 LVRYVQIPD 86
>gi|260790675|ref|XP_002590367.1| hypothetical protein BRAFLDRAFT_76640 [Branchiostoma floridae]
gi|229275559|gb|EEN46378.1| hypothetical protein BRAFLDRAFT_76640 [Branchiostoma floridae]
Length = 130
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
+S + LL +GH T E + G +V + MN M T T GK +
Sbjct: 9 ISQNTLVCLLQAIQGHETTVELRDEASVFGLIVNVDAFMNTTMKYCTYTDHRGKTMQFDD 68
Query: 61 IYIRGSKIRFLILPD 75
Y++G IRF+ +PD
Sbjct: 69 FYVQGRNIRFVQIPD 83
>gi|195160693|ref|XP_002021209.1| GL24936 [Drosophila persimilis]
gi|194118322|gb|EDW40365.1| GL24936 [Drosophila persimilis]
Length = 118
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + ++ IRG+
Sbjct: 1 MKLSHET----VTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLESLSIRGN 56
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 57 NIRYFILPDSL 67
>gi|156369567|ref|XP_001628047.1| predicted protein [Nematostella vectensis]
gi|156215013|gb|EDO35984.1| predicted protein [Nematostella vectensis]
Length = 120
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG + G + + +MN + V +T ++ + + ++ IRG+
Sbjct: 8 MKLSHET----VTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREPMQLESLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILP+ L
Sbjct: 64 NIRYFILPESL 74
>gi|301779577|ref|XP_002925209.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Ailuropoda melanoleuca]
gi|281344415|gb|EFB19999.1| hypothetical protein PANDA_014655 [Ailuropoda melanoleuca]
Length = 123
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL +G + T + + + RG++ + MN +A+VT T R G + ++++ G
Sbjct: 18 IILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHRVALDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
>gi|145549786|ref|XP_001460572.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124428402|emb|CAK93175.1| unnamed protein product [Paramecium tetraurelia]
Length = 128
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
P+ LL A+G + E GD + GKL + MN + +V T +DG + + I
Sbjct: 5 FPLSLLLTAKGSDVVIEVKAGDTYDGKLELLDKFMNAKLTNVKHTSKDGNSFHGIKELLI 64
Query: 64 RGSKIRFLIL-PDMLKNA 80
+G+ I++ L PD K A
Sbjct: 65 KGNSIKYFRLNPDAEKKA 82
>gi|326498561|dbj|BAJ98708.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 181
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG G + + +MN + V +T + + +I +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTMKGKNPVTLDHISVRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAGAAGR 96
IR+ ILPD ++++ P K K+ GR
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRVKSKKPTTGKPMGR 100
>gi|225462054|ref|XP_002275736.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Vitis
vinifera]
Length = 114
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + M ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSVRGN 63
Query: 67 KIRFLILPD 75
IR+ ILPD
Sbjct: 64 NIRYYILPD 72
>gi|403356719|gb|EJY77960.1| hypothetical protein OXYTRI_00397 [Oxytricha trifallax]
Length = 187
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 20 CETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLIL-PDMLK 78
+T NG+ + G L++ +D MN + DV T G+ ++IRG+ ++ + L ++++
Sbjct: 2 VDTKNGESYDGTLLKCDDWMNLYLKDVIRTTTTGQFSKFEQVFIRGNHVKNIQLSEEIIE 61
Query: 79 NAPM-FKGKQGNKA 91
N K +Q KA
Sbjct: 62 NYQAELKRRQAEKA 75
>gi|168021867|ref|XP_001763462.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685255|gb|EDQ71651.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 121
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDML 77
+ E N RG L + ++ MN + D TV +G K + +++RGS IRF+ +PD +
Sbjct: 25 LLVELRNDLSIRGILDDCDNAMNVIIKDATVEDVEGVQKQLPLVFLRGSNIRFVHIPDNV 84
Query: 78 KNAPMFKGKQ--GNKAGAAGRGK 98
+ + ++ ++A A GK
Sbjct: 85 DIMKLVEERRLMLDQAATAYTGK 107
>gi|148674280|gb|EDL06227.1| mCG21971 [Mus musculus]
Length = 134
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + I+G+
Sbjct: 23 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIQGT 78
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 79 NIRYFILPDSL 89
>gi|125540070|gb|EAY86465.1| hypothetical protein OsI_07847 [Oryza sativa Indica Group]
Length = 114
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD ++++ P K K+
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRVKAKK 91
>gi|410910972|ref|XP_003968964.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Takifugu
rubripes]
Length = 119
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + ++ IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTPKNREPTQLESLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|260819208|ref|XP_002604929.1| hypothetical protein BRAFLDRAFT_264344 [Branchiostoma floridae]
gi|229290258|gb|EEN60939.1| hypothetical protein BRAFLDRAFT_264344 [Branchiostoma floridae]
Length = 121
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + ++ IRG+
Sbjct: 8 MKLSHET----VTVELKNGTQVHGTITGVDVSMNTHLKAVKMTIKNREPVQLDSLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|388509846|gb|AFK42989.1| unknown [Lotus japonicus]
Length = 116
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|307165950|gb|EFN60277.1| Probable malonyl CoA-acyl carrier protein transacylase,
mitochondrial [Camponotus floridanus]
Length = 463
Score = 38.5 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + + +RG+
Sbjct: 348 MKLSHET----VTIELKNGTQVTGTITGVDVAMNTHLKTVKMTIKNRDPIQLETLSLRGN 403
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 404 NIRYYILPDSL 414
>gi|168013855|ref|XP_001759481.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689411|gb|EDQ75783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMA--NIYIR 64
++ L + ++ E NG + G + + +MN + V +T + GKV P+A ++ +R
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKSVKLTLK-GKV-PVALDHLSVR 61
Query: 65 GSKIRFLILPDML 77
G+ IR+ ILPD L
Sbjct: 62 GNNIRYYILPDSL 74
>gi|260943870|ref|XP_002616233.1| hypothetical protein CLUG_03474 [Clavispora lusitaniae ATCC
42720]
gi|238849882|gb|EEQ39346.1| hypothetical protein CLUG_03474 [Clavispora lusitaniae ATCC
42720]
Length = 115
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 10 LHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIR 69
L A +T E NG+ G+++ +MN +M ++ + + M + IRG++IR
Sbjct: 10 LPSATNQPVTVELKNGNSVNGQILSCSPSMNLSMKNIKLIQPHQDPQLMQFMNIRGNQIR 69
Query: 70 FLILPDML 77
++LPD L
Sbjct: 70 QILLPDDL 77
>gi|328770984|gb|EGF81025.1| hypothetical protein BATDEDRAFT_11263 [Batrachochytrium
dendrobatidis JAM81]
Length = 124
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
M + + L + +T E NG G + + MN + V +T ++ +
Sbjct: 1 MPVYQSFRFLMKCWNETVTIELKNGTTINGTITGVDMQMNTHLKTVKMTVKNKDPVHLET 60
Query: 61 IYIRGSKIRFLILPDML 77
+ IRG+ IR+ ILPD L
Sbjct: 61 LSIRGNTIRYFILPDAL 77
>gi|405973300|gb|EKC38022.1| Small nuclear ribonucleoprotein Sm D1 [Crassostrea gigas]
Length = 688
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + + IRG+
Sbjct: 575 MKLSHET----VTIELKNGTQVHGTVTGVDVCMNTHLKAVKMTIKNKDPVQVDTLSIRGN 630
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 631 NIRYYILPDSL 641
>gi|357440765|ref|XP_003590660.1| Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula]
gi|355479708|gb|AES60911.1| Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula]
Length = 114
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD +++ AP K K+
Sbjct: 64 NIRYYILPDSLNLETLLVEEAPRVKPKK 91
>gi|356504916|ref|XP_003521240.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 1
[Glycine max]
gi|356504918|ref|XP_003521241.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Glycine max]
Length = 114
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD +++ AP K K+
Sbjct: 64 NIRYYILPDSLNLETLLVEEAPKIKPKK 91
>gi|401825101|ref|XP_003886646.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
gi|395459791|gb|AFM97665.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
Length = 99
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I+ L + +G + ET G GK+V + MN + D V DG +P +RGS
Sbjct: 4 IRFLRKCKGEKVNVETKEGRKVGGKIVSVDKTMNVEIEDAMV---DG--EPAGTYTVRGS 58
Query: 67 KIRFLILPDMLKNAPMF 83
IR+++ D + P+
Sbjct: 59 SIRYIMFRDDICFKPLL 75
>gi|83272157|gb|ABC00745.1| putative small nuclear ribonucleoprotein D1 [Brassica napus]
Length = 118
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + M ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNPVTMDHLSLRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|149250230|ref|XP_001481216.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Mus musculus]
gi|309264642|ref|XP_003086326.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Mus
musculus]
Length = 119
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + I+G+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIQGT 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|402589502|gb|EJW83434.1| Sm protein [Wuchereria bancrofti]
Length = 137
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L +T E NG + G + + MN + V +T + K M + IRG+
Sbjct: 4 MRFLMRLHDKFVTIELKNGTVVMGYVSSVDLAMNFHLNRVAMTLKSEKPVSMDAVSIRGN 63
Query: 67 KIRFLILPDML 77
IR++I P L
Sbjct: 64 NIRYVIFPKNL 74
>gi|443713219|gb|ELU06184.1| hypothetical protein CAPTEDRAFT_162674 [Capitella teleta]
Length = 126
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG + G + + +MN + V +T ++ + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTMVHGTITGVDVSMNTHLKSVKMTIKNRDPIQLDTLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ +LPD L
Sbjct: 64 NIRYYLLPDSL 74
>gi|341038646|gb|EGS23638.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 118
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + M+ A+ +V T + + + ++ +RG+
Sbjct: 4 VRFLMKCANETVTIELKNGAIVHGTIASVTPKMDTALRNVRYTPKGEEPYSVESLTVRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKAG 92
IR+ ILPD ++ +AP K K +A
Sbjct: 64 TIRYYILPDSLPLDTLLIDDAPKPKNKARKEAD 96
>gi|340504873|gb|EGR31279.1| small nuclear ribonucleoprotein sm d1, putative [Ichthyophthirius
multifiliis]
Length = 110
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + + +T E NG G ++ + MN ++ V +T + + ++ IRG+
Sbjct: 4 VRFLMKLKNQTVTIELKNGTQITGSIIGVDIRMNTHLSKVKLTIKGKNPVSLDHLTIRGN 63
Query: 67 KIRFLILPDML 77
IR+ +LP+ L
Sbjct: 64 NIRYFLLPEAL 74
>gi|242022404|ref|XP_002431630.1| small nuclear ribonucleoprotein sm D1, putative [Pediculus
humanus corporis]
gi|212516938|gb|EEB18892.1| small nuclear ribonucleoprotein sm D1, putative [Pediculus
humanus corporis]
Length = 122
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNKEPVMLETLTIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|357149831|ref|XP_003575247.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Brachypodium distachyon]
Length = 114
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|255559488|ref|XP_002520764.1| small nuclear ribonucleoprotein sm d1, putative [Ricinus
communis]
gi|223540149|gb|EEF41726.1| small nuclear ribonucleoprotein sm d1, putative [Ricinus
communis]
Length = 114
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|149235059|ref|XP_001523408.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452817|gb|EDK47073.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 125
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVT--FRDGKVKPMANIYIRGSKIRFLILPD 75
IT E NG++ G L+ A MN + +V + ++D + + I IRG++IR ++LPD
Sbjct: 18 ITVELKNGNIVNGTLLSANPQMNLNLKNVKLQQLYQDPIL--LQYINIRGNQIRQILLPD 75
Query: 76 ML 77
L
Sbjct: 76 DL 77
>gi|320168484|gb|EFW45383.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 131
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + E NG + +G +V + MN + +V +T ++ + + IRG+
Sbjct: 4 VRFLMRLVSETVIVELKNGTVVQGTIVGVDHLMNTMLRNVKLTVKNKDPVSLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR ILPD L
Sbjct: 64 NIRHYILPDSL 74
>gi|198464926|ref|XP_001353417.2| GA10544 [Drosophila pseudoobscura pseudoobscura]
gi|198149939|gb|EAL30924.2| GA10544 [Drosophila pseudoobscura pseudoobscura]
Length = 125
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + ++ IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLESLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|226372678|gb|ACO51964.1| U7 snRNA-associated Sm-like protein LSm10 [Rana catesbeiana]
Length = 121
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 9 LLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKI 68
LL GH T E + +G ++ + MN + VT T R GK + +++I G +
Sbjct: 20 LLQGLHGHATTVELRDESSAKGSVINVDAFMNVRLEKVTYTDRRGKESKLDDLFINGRNV 79
Query: 69 RFLILPD 75
R++ +P+
Sbjct: 80 RYIHIPE 86
>gi|297848542|ref|XP_002892152.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337994|gb|EFH68411.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 117
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|363814443|ref|NP_001242856.1| uncharacterized protein LOC100778485 [Glycine max]
gi|255640505|gb|ACU20538.1| unknown [Glycine max]
Length = 114
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGAVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD +++ AP K K+
Sbjct: 64 NIRYYILPDSLNLETLLVEEAPKIKPKK 91
>gi|195019728|ref|XP_001985042.1| GH14721 [Drosophila grimshawi]
gi|193898524|gb|EDV97390.1| GH14721 [Drosophila grimshawi]
Length = 124
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + ++ IRG+
Sbjct: 8 MKLSHET----VTVELKNGTQIHGTITGVDVAMNTHLKSVKMTIKNRDPVHLESLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|17945870|gb|AAL48981.1| RE39488p [Drosophila melanogaster]
Length = 124
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDHVHLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|389633655|ref|XP_003714480.1| glycine rich protein [Magnaporthe oryzae 70-15]
gi|351646813|gb|EHA54673.1| glycine rich protein [Magnaporthe oryzae 70-15]
gi|440476439|gb|ELQ45036.1| glycine rich protein [Magnaporthe oryzae Y34]
gi|440489076|gb|ELQ68756.1| glycine rich protein [Magnaporthe oryzae P131]
Length = 121
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPD 75
+ E NG+ G LV+ + MN + +V T DG K + IY++G+ I++L +PD
Sbjct: 1 MMVELKNGETLNGHLVQCDTWMNLTLREVVQTSPDGDKFMRLPEIYVKGNNIKYLRVPD 59
>gi|225436986|ref|XP_002277211.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 1
[Vitis vinifera]
gi|225436988|ref|XP_002277231.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Vitis vinifera]
Length = 114
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|296086730|emb|CBI32365.3| unnamed protein product [Vitis vinifera]
Length = 144
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 34 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 93
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 94 NIRYYILPDSL 104
>gi|221125651|ref|XP_002163302.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Hydra
magnipapillata]
Length = 128
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG + G + + +MN + V +T + + + IRG+
Sbjct: 8 MKLSHET----VTVELKNGTVAHGTITGVDMSMNTHLKAVKMTLKGKDPVQLETLSIRGN 63
Query: 67 KIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGI 101
IR+ ILP+ L P+ ++ + RG G+
Sbjct: 64 NIRYFILPESL---PLDTLLVDDEPKSKARGDKGL 95
>gi|358410942|ref|XP_001254398.4| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|359063093|ref|XP_002685437.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
Length = 118
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSK 67
KL HE +T E NG G + + +MN + V +T ++ + + + I+G+
Sbjct: 9 KLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIQGNN 64
Query: 68 IRFLILPDML 77
IR+ ILPD L
Sbjct: 65 IRYFILPDSL 74
>gi|296490547|tpg|DAA32660.1| TPA: small nuclear ribonucleoprotein D1 polypeptide 16kDa-like
[Bos taurus]
Length = 134
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSK 67
KL HE +T E NG G + + +MN + V +T ++ + + + I+G+
Sbjct: 9 KLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIQGNN 64
Query: 68 IRFLILPDML 77
IR+ ILPD L
Sbjct: 65 IRYFILPDSL 74
>gi|356499683|ref|XP_003518666.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 1
[Glycine max]
Length = 116
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|359806624|ref|NP_001241019.1| uncharacterized protein LOC100819089 [Glycine max]
gi|255647733|gb|ACU24327.1| unknown [Glycine max]
Length = 115
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 76
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MS+ + +K+L E+ G ++ + G + RG L + +MN + D +GK +
Sbjct: 1 MSVDMAVKVLDESLGKVVLIKLKGGKVIRGNLHGFDQHMNLLLEDSVEILEEGKSNDLGT 60
Query: 61 IYIRGSKIRFL 71
I +RG + +
Sbjct: 61 IVVRGDNVVII 71
>gi|326368279|ref|NP_001191919.1| small nuclear ribonucleoprotein Sm D1 [Acyrthosiphon pisum]
Length = 135
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+K L + +T E NG G + + MN + V +T R+ + + IRG+
Sbjct: 4 VKFLMKLSHETVTLELKNGTSVHGTITGVDVAMNTHLKAVKMTVRNQQPIHYETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|239789454|dbj|BAH71352.1| ACYPI007411 [Acyrthosiphon pisum]
Length = 122
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+K L + +T E NG G + + MN + V +T R+ + + IRG+
Sbjct: 4 VKFLMKLSHETVTLELKNGTSVHGTITGVDVAMNTHLKAVKMTVRNQQPIHYETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|346979373|gb|EGY22825.1| DOM34-interacting protein [Verticillium dahliae VdLs.17]
Length = 1081
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADVTVT--FRDGKVKPMANIYIRGSKIRFLIL 73
H +T E N RG L + +N + D++V + + + N++IRGS +R++ L
Sbjct: 996 HEVTIELKNDIQIRGTLKSVDQYLNIKLEDISVVEELKYPHLSSVKNVFIRGSVVRYVHL 1055
Query: 74 PDMLKNAPMFK 84
P + P+ +
Sbjct: 1056 PAASVDVPLLE 1066
>gi|302414568|ref|XP_003005116.1| DOM34-interacting protein [Verticillium albo-atrum VaMs.102]
gi|261356185|gb|EEY18613.1| DOM34-interacting protein [Verticillium albo-atrum VaMs.102]
Length = 977
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADVTVT--FRDGKVKPMANIYIRGSKIRFLIL 73
H +T E N RG L + +N + D++V + + + N++IRGS +R++ L
Sbjct: 892 HEVTIELKNDIQIRGTLKSVDQYLNIKLEDISVVEELKYPHLSSVKNVFIRGSVVRYVHL 951
Query: 74 PDMLKNAPMFK 84
P + P+ +
Sbjct: 952 PAASVDVPLLE 962
>gi|17864386|ref|NP_524774.1| small ribonucleoprotein particle protein SmD1 [Drosophila
melanogaster]
gi|194747611|ref|XP_001956245.1| GF25112 [Drosophila ananassae]
gi|195327205|ref|XP_002030312.1| GM24635 [Drosophila sechellia]
gi|195493908|ref|XP_002094615.1| GE20102 [Drosophila yakuba]
gi|195589894|ref|XP_002084684.1| GD12704 [Drosophila simulans]
gi|33112453|sp|Q9VU02.1|SMD1_DROME RecName: Full=Probable small nuclear ribonucleoprotein Sm D1;
Short=Sm-D1; AltName: Full=snRNP core protein D1
gi|7294552|gb|AAF49893.1| small ribonucleoprotein particle protein SmD1 [Drosophila
melanogaster]
gi|189181777|gb|ACD81665.1| FI02845p [Drosophila melanogaster]
gi|190623527|gb|EDV39051.1| GF25112 [Drosophila ananassae]
gi|194119255|gb|EDW41298.1| GM24635 [Drosophila sechellia]
gi|194180716|gb|EDW94327.1| GE20102 [Drosophila yakuba]
gi|194196693|gb|EDX10269.1| GD12704 [Drosophila simulans]
Length = 124
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|195126373|ref|XP_002007645.1| GI12268 [Drosophila mojavensis]
gi|193919254|gb|EDW18121.1| GI12268 [Drosophila mojavensis]
Length = 124
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + ++ IRG+
Sbjct: 8 MKLSHET----VTVELKNGTQIHGTITGVDVAMNTHLKSVKMTIKNRDPVHLESLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|194870009|ref|XP_001972567.1| GG13810 [Drosophila erecta]
gi|190654350|gb|EDV51593.1| GG13810 [Drosophila erecta]
Length = 124
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|47212040|emb|CAF92642.1| unnamed protein product [Tetraodon nigroviridis]
Length = 115
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+ LL +G + T + N RG++V + MN + V R G++ M ++++ G
Sbjct: 13 VVLLQGLQGEVTTVDLRNECTARGRIVSVDAFMNMRLEAVLYRDRRGQLANMQDLFVTGR 72
Query: 67 KIRFLILP---DMLKNAPM 82
+R++ +P DM+K M
Sbjct: 73 NVRYVHVPDHVDMMKTIEM 91
>gi|354477407|ref|XP_003500912.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Cricetulus griseus]
gi|344245005|gb|EGW01109.1| U7 snRNA-associated Sm-like protein LSm10 [Cricetulus griseus]
Length = 122
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+ LL +G I T + + RG++ + MN +A+VT T R G + ++++ G
Sbjct: 18 VILLQGLQGQITTVDLRDESSARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
>gi|302770463|ref|XP_002968650.1| hypothetical protein SELMODRAFT_145785 [Selaginella
moellendorffii]
gi|302816441|ref|XP_002989899.1| hypothetical protein SELMODRAFT_235902 [Selaginella
moellendorffii]
gi|300142210|gb|EFJ08912.1| hypothetical protein SELMODRAFT_235902 [Selaginella
moellendorffii]
gi|300163155|gb|EFJ29766.1| hypothetical protein SELMODRAFT_145785 [Selaginella
moellendorffii]
Length = 114
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V + + M ++ IRG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVNGTITGVDISMNTHLKAVKLVLKGKNPVTMDHLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|15235510|ref|NP_192193.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
gi|4263519|gb|AAD15345.1| small nuclear riboprotein Sm-D1 [Arabidopsis thaliana]
gi|7269769|emb|CAB77769.1| small nuclear riboprotein Sm-D1-like protein [Arabidopsis
thaliana]
gi|21536940|gb|AAM61281.1| small nuclear riboprotein Sm-D1-like protein [Arabidopsis
thaliana]
gi|26450421|dbj|BAC42325.1| putative small nuclear riboprotein Sm-D1 [Arabidopsis thaliana]
gi|114050553|gb|ABI49426.1| At4g02840 [Arabidopsis thaliana]
gi|332656836|gb|AEE82236.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
Length = 116
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|297814015|ref|XP_002874891.1| hypothetical protein ARALYDRAFT_490274 [Arabidopsis lyrata subsp.
lyrata]
gi|297320728|gb|EFH51150.1| hypothetical protein ARALYDRAFT_490274 [Arabidopsis lyrata subsp.
lyrata]
Length = 116
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|327277806|ref|XP_003223654.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like, partial
[Anolis carolinensis]
Length = 94
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE IT E NG G + + +MN + V +T ++ + + + IR +
Sbjct: 8 MKLSHET----ITIELKNGTQVHGTITGVDVSMNTYLKAVKMTLKNREPIQLETLSIRSN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|323455004|gb|EGB10873.1| hypothetical protein AURANDRAFT_22657 [Aureococcus
anophagefferens]
Length = 114
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + +G + + +MN + + ++T + + +RGS
Sbjct: 4 VRFLMKLNNETVTIELKNGTVVQGTISGVDISMNTFLKNASLTPKGKNGVKYDTLSVRGS 63
Query: 67 KIRFLILPDMLK-NAPMFKGKQGNKAGAAGRGKS 99
+R+ ILPD L + + K AAG +S
Sbjct: 64 NVRYYILPDSLNLDTLLIDDTPKQKVKAAGAARS 97
>gi|414586803|tpg|DAA37374.1| TPA: hypothetical protein ZEAMMB73_218857 [Zea mays]
Length = 108
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDML 77
+T E NG + G + + +MN + V +T + + ++ +RG+ IR+ ILPD L
Sbjct: 8 VTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSL 67
>gi|413918616|gb|AFW58548.1| hypothetical protein ZEAMMB73_336389 [Zea mays]
Length = 109
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDML 77
+T E NG + G + + +MN + V +T + + ++ +RG+ IR+ ILPD L
Sbjct: 8 VTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSL 67
>gi|115446977|ref|NP_001047268.1| Os02g0586500 [Oryza sativa Japonica Group]
gi|46806276|dbj|BAD17484.1| putative small nuclear ribonucleoprotein D1 polypeptide 16kDa;
snRNP core protein D1; Sm-D autoantigen [Oryza sativa
Japonica Group]
gi|113536799|dbj|BAF09182.1| Os02g0586500 [Oryza sativa Japonica Group]
gi|125582674|gb|EAZ23605.1| hypothetical protein OsJ_07305 [Oryza sativa Japonica Group]
Length = 114
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG G + + +MN + V +T + ++ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSVRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD ++++ P K K+
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRVKAKK 91
>gi|334329130|ref|XP_003341185.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Monodelphis domestica]
Length = 123
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+ LL G + T + + + RG++ + MN +A+VT T R G+ + ++++ G
Sbjct: 18 VILLQGLRGLVTTVDLRDETVARGRVDNVDAFMNIRLAEVTYTDRQGQQVQLDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
>gi|345327225|ref|XP_001510929.2| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Ornithorhynchus anatinus]
Length = 203
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+ LL G + T + + L RG++ + MN + VT T R G+ + ++++ G
Sbjct: 18 VILLQGLVGQVTTVDMRDESLARGRVANVDAFMNIRLDQVTYTDRWGREVQLDDLFVAGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 SVRYVHIPD 86
>gi|224003195|ref|XP_002291269.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973045|gb|EED91376.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 120
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+K L + +T E NG + G +V + MN + +T + A + +RGS
Sbjct: 4 VKFLQKLNREQVTIELKNGTVISGTVVGVDATMNAHLKKAKLTAKGKNPVSYATLSVRGS 63
Query: 67 KIRFLILPD 75
+R ILPD
Sbjct: 64 TVRSWILPD 72
>gi|123485483|ref|XP_001324496.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121907380|gb|EAY12273.1| hypothetical protein TVAG_160790 [Trichomonas vaginalis G3]
Length = 111
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDML 77
+T E + + +G +V + MN + V + + K + N+ IRG+ IR++ILPD+L
Sbjct: 15 VTVELKDNTVIKGTVVGVDSAMNTHLRLVHIKAPGQEEKRLENLTIRGASIRYVILPDVL 74
>gi|47028291|gb|AAT09078.1| small nuclear ribonucleoprotein Sm-D1 [Bigelowiella natans]
Length = 120
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+K L +T E NG + +G + + +MN + V +T + + + IRG+
Sbjct: 4 VKFLMRLNNETVTVELKNGTVVQGTISGVDMSMNTHLKIVKMTLKGKNPVHLDTLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|219123909|ref|XP_002182258.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406219|gb|EEC46159.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 110
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+K L + +T E NG + +G +V + MNC + VT R P A + +RGS
Sbjct: 4 VKFLQKLNREQVTIELKNGTVVQGTVVGVDSTMNCHLKKAKVTVRGKNPVPYATLSVRGS 63
Query: 67 KIRFLILPDML 77
+R ILP+ L
Sbjct: 64 TMRSWILPESL 74
>gi|395526532|ref|XP_003765416.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Sarcophilus
harrisii]
Length = 123
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+ LL G + T + + + RG++ + MN +A+VT T R G+ + ++++ G
Sbjct: 18 VILLQGLRGLVTTVDLRDETVARGRVDNVDAFMNIRLAEVTYTDRQGQQVQLDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
>gi|224066521|ref|XP_002302121.1| predicted protein [Populus trichocarpa]
gi|118482633|gb|ABK93236.1| unknown [Populus trichocarpa]
gi|118488779|gb|ABK96200.1| unknown [Populus trichocarpa]
gi|222843847|gb|EEE81394.1| predicted protein [Populus trichocarpa]
Length = 115
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTVKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|158285999|ref|XP_308555.4| AGAP007246-PA [Anopheles gambiae str. PEST]
gi|157020260|gb|EAA04383.5| AGAP007246-PA [Anopheles gambiae str. PEST]
Length = 126
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + ++ IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVTLDSLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD ++ +AP + K+
Sbjct: 64 NIRYYILPDSLPLETLLIDDAPKTRAKK 91
>gi|168068658|ref|XP_001786159.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662031|gb|EDQ49029.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 111
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKV-KPMANIYIRGS 66
+ L + ++ E NG + G + + +MN + V +T + GKV + ++ IRG+
Sbjct: 1 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKSVKLTLK-GKVPVSLDHLSIRGN 59
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD ++ + P K K+
Sbjct: 60 NIRYYILPDSLNLDTLLVDDTPRVKAKK 87
>gi|255637946|gb|ACU19289.1| unknown [Glycine max]
Length = 116
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ +LPD L
Sbjct: 64 NIRYYVLPDSL 74
>gi|239789452|dbj|BAH71351.1| ACYPI007411 [Acyrthosiphon pisum]
Length = 155
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+K L + +T E NG G + + MN + V +T R+ + + IRG+
Sbjct: 4 VKFLMKLSHETVTLELKNGTSVHGTITGVDVAMNTHLKAVKMTVRNQQPIHYETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|170064026|ref|XP_001867355.1| small nuclear ribonucleoprotein Sm D1 [Culex quinquefasciatus]
gi|167881462|gb|EDS44845.1| small nuclear ribonucleoprotein Sm D1 [Culex quinquefasciatus]
Length = 126
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + ++ IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVQLDSLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD ++ +AP + K+
Sbjct: 64 NIRYYILPDSLPLETLLIDDAPKTRAKK 91
>gi|157105264|ref|XP_001648790.1| small nuclear ribonucleoprotein sm d1 [Aedes aegypti]
gi|157118312|ref|XP_001653165.1| small nuclear ribonucleoprotein sm d1 [Aedes aegypti]
gi|108880134|gb|EAT44359.1| AAEL004263-PA [Aedes aegypti]
gi|108883288|gb|EAT47513.1| AAEL001382-PA [Aedes aegypti]
Length = 126
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + ++ IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVQLDSLSIRGN 63
Query: 67 KIRFLILPD-------MLKNAPMFKGKQ 87
IR+ ILPD ++ +AP + K+
Sbjct: 64 NIRYYILPDSLPLETLLIDDAPKTRAKK 91
>gi|116784296|gb|ABK23291.1| unknown [Picea sitchensis]
Length = 114
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + + E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVNIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKSPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|326430943|gb|EGD76513.1| small nuclear ribonucleoprotein Sm D1 [Salpingoeca sp. ATCC 50818]
Length = 161
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + G + + MN M V ++ + + + + +RG+
Sbjct: 48 VRFLMKLSNETVTVELKNGTVVHGTVAGVDVAMNMHMKTVKMSIKGREATALDTLTVRGN 107
Query: 67 KIRFLILPD-------MLKNAPMFKGKQGNKA 91
IR +ILPD ++ + P K K+ A
Sbjct: 108 TIRHVILPDSLPLDTLLIDDTPKIKAKKKEVA 139
>gi|224082616|ref|XP_002306766.1| predicted protein [Populus trichocarpa]
gi|222856215|gb|EEE93762.1| predicted protein [Populus trichocarpa]
Length = 112
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + +MN + V +T + + ++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTVKGKNPVTLDHLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>gi|330946004|ref|XP_003306672.1| hypothetical protein PTT_19864 [Pyrenophora teres f. teres 0-1]
gi|311315722|gb|EFQ85223.1| hypothetical protein PTT_19864 [Pyrenophora teres f. teres 0-1]
Length = 90
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 20 CETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPD 75
E +G+ G LV + MN + +V T DG K + IY+RGS I++L +PD
Sbjct: 3 VELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKYLRVPD 59
>gi|330796086|ref|XP_003286100.1| hypothetical protein DICPUDRAFT_77015 [Dictyostelium purpureum]
gi|325083919|gb|EGC37359.1| hypothetical protein DICPUDRAFT_77015 [Dictyostelium purpureum]
Length = 126
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + +T E NG + +G + + +MN + V +T + + + IRG+
Sbjct: 4 VRFLMKLHNETVTIELKNGTIVQGTIAGVDVSMNTHLKTVKLTLKGKNPVNLDTLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILP+ L
Sbjct: 64 NIRYYILPESL 74
>gi|444323153|ref|XP_004182217.1| hypothetical protein TBLA_0I00350 [Tetrapisispora blattae CBS
6284]
gi|387515264|emb|CCH62698.1| hypothetical protein TBLA_0I00350 [Tetrapisispora blattae CBS
6284]
Length = 196
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVT----VTFRDG---KVKP 57
+P+ LL +G +T E NG++ G+L ++ MN + +V+ F G +V
Sbjct: 2 LPLYLLTNVKGQKMTIELKNGEVVEGELTNVDNWMNLTLTNVSQHNGSDFISGPQVEVVK 61
Query: 58 MANIYIRGSKIRFLIL 73
IY+RG+ I+++ L
Sbjct: 62 SKEIYLRGTYIKYISL 77
>gi|159486837|ref|XP_001701443.1| small nuclear ribonucleoprotein Sm D1 [Chlamydomonas reinhardtii]
gi|158271625|gb|EDO97440.1| small nuclear ribonucleoprotein Sm D1 [Chlamydomonas reinhardtii]
Length = 114
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSK 67
+ L + + E NG + +G + + MN + V +T R M ++ +RG+
Sbjct: 1 RFLMKLANETVQIELKNGTVIQGTIAGVDIAMNTHLKAVKLTARGKNPVSMDHLSVRGNN 60
Query: 68 IRFLILPDML 77
IR+ ILPD L
Sbjct: 61 IRYYILPDSL 70
>gi|328720327|ref|XP_003247002.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Acyrthosiphon pisum]
Length = 134
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+K L + +T E NG G + + MN + V +T ++ + + +RG+
Sbjct: 4 VKFLMKLSHETVTLELKNGTSVHGTITGVDVAMNTHLKTVKMTMKNNQPIHYDTLSVRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|32959908|emb|CAE11897.1| small nuclear ribonucleoprotein Sm D1 [Homo sapiens]
Length = 119
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE + E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 8 MKLSHET----VIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>gi|19172997|ref|NP_597548.1| U6 snRNA ASSOCIATED SM-LIKE PROTEIN [Encephalitozoon cuniculi
GB-M1]
gi|19168664|emb|CAD26183.1| U6 snRNA ASSOCIATED SM-LIKE PROTEIN [Encephalitozoon cuniculi
GB-M1]
gi|449329730|gb|AGE96000.1| U6 snRNA associated sm-like protein [Encephalitozoon cuniculi]
Length = 88
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 6 PIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRG 65
P+ LL + I+ E N D RG L + + MN + VT+ DG + Y++G
Sbjct: 3 PLTLLRISRNRIVELELKNNDQLRGLLHKCDMAMNLHLKSVTIQKEDGSSIFINECYLKG 62
Query: 66 SKIRFLILP 74
+ IR + L
Sbjct: 63 TSIRLVKLE 71
>gi|392577177|gb|EIW70307.1| hypothetical protein TREMEDRAFT_29897 [Tremella mesenterica DSM
1558]
Length = 126
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGK--VKPMA--NIYIRGSKIRFLIL 73
+T E NG + G + + M + V +T R P++ +I IRG+ IR+ +L
Sbjct: 8 VTMELKNGTVIHGTITSVDPAMTTHLKSVKMTLRSSPPGTPPISLDSIAIRGNNIRYYVL 67
Query: 74 PDML 77
PD L
Sbjct: 68 PDSL 71
>gi|296089996|emb|CBI39815.3| unnamed protein product [Vitis vinifera]
Length = 107
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 18 ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPD 75
++ E NG + G + + +MN + V +T + M ++ +RG+ IR+ ILPD
Sbjct: 8 VSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSVRGNNIRYYILPD 65
>gi|403293073|ref|XP_003937547.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Saimiri
boliviensis boliviensis]
Length = 123
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL +G + T + + + G++ + MN +A+VT T R G + ++++ G
Sbjct: 18 IILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAEVTYTDRWGHQVKLDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,348,911,983
Number of Sequences: 23463169
Number of extensions: 102154755
Number of successful extensions: 707838
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1821
Number of HSP's successfully gapped in prelim test: 2670
Number of HSP's that attempted gapping in prelim test: 644865
Number of HSP's gapped (non-prelim): 55074
length of query: 132
length of database: 8,064,228,071
effective HSP length: 97
effective length of query: 35
effective length of database: 10,083,267,974
effective search space: 352914379090
effective search space used: 352914379090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)