BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17024
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O44437|SMD3_DROME Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanogaster
GN=SmD3 PE=1 SV=1
Length = 151
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/107 (71%), Positives = 90/107 (84%), Gaps = 1/107 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M +TVT+RDG+ + N
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLEN 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKGKQGN-KAGAAGRGKSGILRAQA 106
+YIRGSKIRFLILPDMLKNAPMFK + G G AGRGK+ ILRAQA
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAILRAQA 107
>sp|P62323|SMD3_XENLA Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3
PE=2 SV=1
Length = 126
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 91/108 (84%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108
>sp|P62320|SMD3_MOUSE Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3
PE=1 SV=1
Length = 126
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 91/108 (84%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108
>sp|P62318|SMD3_HUMAN Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3
PE=1 SV=1
Length = 126
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 91/108 (84%), Gaps = 1/108 (0%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN 60
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG+V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 61 IYIRGSKIRFLILPDMLKNAPMFKG-KQGNKAGAAGRGKSGILRAQAA 107
+YIRGSKIRFLILPDMLKNAPM K K N+ AGRGK+ IL+AQ A
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108
>sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis elegans
GN=snr-1 PE=2 SV=2
Length = 136
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 95/131 (72%), Gaps = 5/131 (3%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANI 61
S+G+PIK+LHEAEGH++T ET G+++RGKL EAEDNMNC +A+ VTFRDG+ + N+
Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNV 62
Query: 62 YIRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRG-G 120
+IRG+KIRF+ILPDMLKNAPMFK + GA G G G+ RGRGRG +R G
Sbjct: 63 FIRGNKIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLGGL----DQRGRGRGTAFRRPMG 118
Query: 121 RGGWGGPSRGG 131
RGG G SR G
Sbjct: 119 RGGPRGMSRPG 129
>sp|Q9UUC6|SMD3_SCHPO Small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd3 PE=1 SV=1
Length = 97
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 70/96 (72%)
Query: 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIY 62
+ + IKLLHE +GHI+T E NG +RGKL+EAEDNMNC M D++VT RDG+V + +Y
Sbjct: 1 MSLCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVY 60
Query: 63 IRGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGK 98
IRGS IRFLI+PDML+NAPMFK G RG+
Sbjct: 61 IRGSHIRFLIVPDMLRNAPMFKVGPGRSVPLPTRGR 96
>sp|P43321|SMD3_YEAST Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD3 PE=1 SV=1
Length = 101
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 63/81 (77%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYI 63
GIP+KLL+EA+GHI++ E T G +RGKLVE+ED+MN + DV T G V M I++
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFV 64
Query: 64 RGSKIRFLILPDMLKNAPMFK 84
RGS+I+F+++PD+LKNAP+FK
Sbjct: 65 RGSQIKFIVVPDLLKNAPLFK 85
>sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4
PE=2 SV=1
Length = 137
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 22/115 (19%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQR 118
RGS I++L +PD + + ++R +AA+GRGRGGP Q+
Sbjct: 62 RGSTIKYLRIPDEIID---------------------MVREEAAKGRGRGGPQQK 95
>sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4
PE=1 SV=1
Length = 139
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVVAKGR 88
>sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4
PE=2 SV=1
Length = 139
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG K M YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILP----DMLKNAPMFKGK 86
RGS I++L +P DM+K + KG+
Sbjct: 62 RGSTIKYLRIPDEIIDMVKEEVVAKGR 88
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana
tabacum PE=2 SV=1
Length = 146
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG + M Y+
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYV 61
Query: 64 RGSKIRFLILPDML--KNAPMFKGKQGNKAGAAGRGKSGILRAQAARGR 110
RG+ I++L +PD + K K + K GR ++ R +A GR
Sbjct: 62 RGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGR 110
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4 OS=Dictyostelium
discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL +GH I E NG+ + G LV ++ MN + +V T +D K + + YI
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYI 61
Query: 64 RGSKIRFLILPDMLKNAPMFKGKQGNKAGAAGRGKSGILRAQAARGRGRGGPPQRGGRGG 123
RG+ I+++ +PD + + + + +Q + R S RGRGRG GRG
Sbjct: 62 RGNTIKYISVPDEIIDL-VAEEEQTLRTTYQQRNDSN-------RGRGRGDGFAGRGRGD 113
Query: 124 WGGPSRG 130
G RG
Sbjct: 114 ASGRGRG 120
>sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa
subsp. japonica GN=Os01g0256900 PE=2 SV=1
Length = 147
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG K M YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+GH + E +G+ + G LV + MN + +V T +DG + M + YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4
OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1
Length = 123
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL A+ H + E NG+ + G L + MN + DV T +DG K M+ Y+
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYV 62
Query: 64 RGSKIRFLILPD 75
RGS I++L +P+
Sbjct: 63 RGSTIKYLRIPE 74
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm4 PE=1 SV=1
Length = 121
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYI 63
+P+ LL+ +G I E NG+ F G L ++ MN + +V T DG K + YI
Sbjct: 2 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYI 61
Query: 64 RGSKIRFLILPD 75
RG+ I++L + D
Sbjct: 62 RGNNIKYLRIQD 73
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1
SV=1
Length = 187
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMAN---- 60
+P+ LL A+G + E NG++ +G L ++ MN +++VT + + N
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESS 61
Query: 61 -------IYIRGSKIRFLILPD 75
IYIRG+ I+F+ L D
Sbjct: 62 KAVKLNEIYIRGTFIKFIKLQD 83
>sp|Q8QZX5|LSM10_MOUSE U7 snRNA-associated Sm-like protein LSm10 OS=Mus musculus
GN=Lsm10 PE=1 SV=1
Length = 122
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL +G I T + + + RG++ + MN +A+VT T R G + ++++ G
Sbjct: 18 IILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
>sp|O42661|SMD1_SCHPO Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd1 PE=1 SV=1
Length = 117
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
++ L + ++ E NG + G + + MN + V +T + + P+ + IRG+
Sbjct: 4 VRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1
PE=2 SV=1
Length = 119
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis
GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1
PE=1 SV=1
Length = 119
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1
PE=3 SV=1
Length = 119
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + +MN + V +T ++ + + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>sp|Q9VU02|SMD1_DROME Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila
melanogaster GN=SmD1 PE=1 SV=1
Length = 124
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE +T E NG G + + MN + V +T ++ + + IRG+
Sbjct: 8 MKLSHET----VTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGN 63
Query: 67 KIRFLILPDML 77
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>sp|Q969L4|LSM10_HUMAN U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens
GN=LSM10 PE=1 SV=1
Length = 123
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
I LL +G + T + + + G++ + MN +A VT T R G + ++++ G
Sbjct: 18 IILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGR 77
Query: 67 KIRFLILPD 75
+R++ +PD
Sbjct: 78 NVRYVHIPD 86
>sp|Q10013|SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis
elegans GN=snr-3 PE=3 SV=1
Length = 126
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGS 66
+KL HE + E NG G ++ + MN + V++T ++ + + + IRG+
Sbjct: 8 MKLSHET----VNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGN 63
Query: 67 KIRFLILPD 75
IR++ILPD
Sbjct: 64 NIRYIILPD 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,322,627
Number of Sequences: 539616
Number of extensions: 2470489
Number of successful extensions: 17223
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 371
Number of HSP's that attempted gapping in prelim test: 11641
Number of HSP's gapped (non-prelim): 4644
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)