Query psy17024
Match_columns 132
No_of_seqs 187 out of 1119
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:50:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y9a_D Small nuclear ribonucle 100.0 5E-38 1.7E-42 230.8 7.7 113 1-114 1-114 (126)
2 1b34_A Protein (small nuclear 100.0 4.8E-31 1.7E-35 191.4 9.9 85 5-89 2-86 (119)
3 1d3b_A Protein (small nuclear 100.0 1.3E-29 4.4E-34 170.4 10.5 75 1-75 1-75 (75)
4 4emh_A Probable U6 snRNA-assoc 100.0 5.4E-29 1.9E-33 177.6 9.0 86 4-89 15-101 (105)
5 1i4k_A Putative snRNP SM-like 99.9 7E-24 2.4E-28 142.0 9.9 75 1-76 1-75 (77)
6 1h64_1 SnRNP SM-like protein; 99.9 7.5E-24 2.6E-28 141.4 9.5 75 1-76 1-75 (75)
7 3s6n_F Small nuclear ribonucle 99.9 8.9E-24 3E-28 145.3 10.0 78 1-78 1-79 (86)
8 1ljo_A Archaeal SM-like protei 99.9 1.3E-23 4.5E-28 140.9 10.2 73 4-76 4-77 (77)
9 4emk_B U6 snRNA-associated SM- 99.9 3.2E-23 1.1E-27 138.7 8.3 74 1-75 1-74 (75)
10 1th7_A SnRNP-2, small nuclear 99.9 1.3E-22 4.3E-27 137.5 10.4 73 4-76 8-80 (81)
11 1n9r_A SMF, small nuclear ribo 99.9 1.1E-22 3.6E-27 142.0 7.9 73 3-75 19-92 (93)
12 1i8f_A Putative snRNP SM-like 99.9 3.1E-22 1.1E-26 135.6 9.1 72 3-75 9-80 (81)
13 1mgq_A SM-like protein; LSM, R 99.9 9.5E-22 3.2E-26 133.9 9.1 70 3-72 13-82 (83)
14 4emk_A U6 snRNA-associated SM- 99.9 1.7E-21 5.9E-26 136.3 10.4 72 3-74 18-90 (94)
15 3s6n_G Small nuclear ribonucle 99.9 1.9E-21 6.6E-26 130.5 8.0 75 1-76 1-75 (76)
16 4emg_A Probable U6 snRNA-assoc 99.8 9.3E-21 3.2E-25 132.0 9.3 73 2-74 6-91 (93)
17 1m5q_A SMAP3, small nuclear ri 99.8 1.8E-20 6.1E-25 138.0 7.1 76 7-86 2-77 (130)
18 3bw1_A SMX4 protein, U6 snRNA- 99.8 1.8E-19 6.2E-24 125.9 9.6 79 3-81 8-93 (96)
19 2fwk_A U6 snRNA-associated SM- 99.8 7E-20 2.4E-24 132.8 7.0 74 3-76 26-114 (121)
20 1d3b_B Protein (small nuclear 99.8 1.2E-19 4.1E-24 124.9 6.1 75 1-76 1-85 (91)
21 3s6n_E Small nuclear ribonucle 99.8 2.8E-19 9.7E-24 124.5 7.5 73 3-75 14-91 (92)
22 1b34_B Protein (small nuclear 99.8 1.6E-18 5.3E-23 125.1 8.7 74 3-76 25-114 (118)
23 4emk_C U6 snRNA-associated SM- 99.7 1.9E-17 6.5E-22 119.1 9.3 74 5-78 23-103 (113)
24 3pgw_B SM B; protein-RNA compl 99.7 7.4E-17 2.5E-21 128.5 11.4 76 1-77 1-86 (231)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.7 7.5E-08 2.6E-12 66.2 7.6 66 5-77 8-74 (86)
26 2vxe_A CG10686-PA; EDC3, CAR-1 97.1 0.0032 1.1E-07 43.2 7.8 63 13-75 11-83 (88)
27 2fb7_A SM-like protein, LSM-14 96.7 0.0032 1.1E-07 43.8 5.3 67 9-75 13-89 (95)
28 4a53_A EDC3; RNA binding prote 96.6 0.0061 2.1E-07 44.3 6.5 53 10-73 7-61 (125)
29 2vc8_A Enhancer of mRNA-decapp 96.5 0.0072 2.5E-07 41.1 6.2 59 12-73 6-66 (84)
30 1y96_B Gemin7, SIP3, GEM-assoc 96.3 0.024 8.3E-07 38.6 8.0 63 6-73 20-83 (85)
31 2ylb_A Protein HFQ; RNA-bindin 96.3 0.0058 2E-07 40.6 4.6 56 7-75 11-68 (74)
32 1kq1_A HFQ, HOST factor for Q 96.0 0.016 5.3E-07 38.8 5.5 55 7-73 9-65 (77)
33 1u1s_A HFQ protein; SM-like ba 95.9 0.011 3.7E-07 40.1 4.6 58 7-77 9-68 (82)
34 3ahu_A Protein HFQ; SM-like mo 95.7 0.019 6.4E-07 38.5 5.1 56 8-75 14-71 (78)
35 2y90_A Protein HFQ; RNA-bindin 95.6 0.011 3.7E-07 41.7 3.9 58 7-77 11-70 (104)
36 3sb2_A Protein HFQ; SM-like, R 95.3 0.031 1.1E-06 37.5 5.0 56 8-76 11-68 (79)
37 2qtx_A Uncharacterized protein 95.0 0.054 1.8E-06 35.7 5.4 29 14-42 24-52 (71)
38 3hfo_A SSR3341 protein; HFQ, S 94.5 0.12 3.9E-06 34.0 6.0 41 3-43 6-49 (70)
39 3hfn_A ASL2047 protein; HFQ, S 93.6 0.24 8.3E-06 32.6 6.3 42 3-44 8-52 (72)
40 1ycy_A Conserved hypothetical 92.6 0.77 2.6E-05 29.8 7.3 62 7-73 8-69 (71)
41 2rm4_A CG6311-PB, DM EDC3; enh 91.1 1.5 5.1E-05 30.5 7.9 59 12-74 9-70 (103)
42 1ib8_A Conserved protein SP14. 82.9 1.7 5.7E-05 32.1 4.6 29 10-38 99-131 (164)
43 3by7_A Uncharacterized protein 82.1 6.9 0.00024 27.0 7.2 54 19-74 7-75 (100)
44 3rux_A BIRA bifunctional prote 79.2 3 0.0001 32.8 5.2 33 13-45 222-254 (270)
45 2eay_A Biotin [acetyl-COA-carb 75.9 2.2 7.6E-05 32.7 3.5 46 13-65 186-232 (233)
46 3uby_A DNA-3-methyladenine gly 71.2 5.2 0.00018 31.1 4.6 34 7-40 17-50 (219)
47 2ej9_A Putative biotin ligase; 69.0 14 0.00048 28.2 6.6 32 13-45 190-221 (237)
48 2e5p_A Protein PHF1, PHD finge 66.7 23 0.00078 22.9 6.1 25 14-38 12-36 (68)
49 4hcz_A PHD finger protein 1; p 66.4 8.4 0.00029 24.2 3.9 25 14-38 6-30 (58)
50 2dxu_A Biotin--[acetyl-COA-car 66.0 4.4 0.00015 31.1 3.2 30 14-45 188-217 (235)
51 1bia_A BIRA bifunctional prote 63.9 15 0.00052 29.1 6.1 46 13-64 271-317 (321)
52 3v4h_A Hypothetical protein; s 62.8 15 0.00053 27.4 5.6 68 4-75 89-163 (185)
53 3p8d_A Medulloblastoma antigen 59.2 28 0.00095 22.2 5.6 38 13-55 8-45 (67)
54 2e5q_A PHD finger protein 19; 58.9 30 0.001 22.0 5.5 25 14-38 10-34 (63)
55 1nh2_D Transcription initiatio 58.5 20 0.00069 25.5 5.2 30 22-51 55-87 (121)
56 2e12_A SM-like motif, hypothet 57.1 11 0.00037 25.9 3.4 25 9-33 21-46 (101)
57 1nvp_D Transcription initiatio 54.7 26 0.00088 24.3 5.2 28 23-50 52-82 (108)
58 1sg5_A ORF, hypothetical prote 53.7 6.3 0.00022 26.3 1.8 23 12-34 22-44 (86)
59 2eqj_A Metal-response element- 53.4 18 0.00063 23.1 3.9 25 14-38 16-40 (66)
60 2equ_A PHD finger protein 20-l 53.1 37 0.0013 21.8 5.4 35 14-53 12-46 (74)
61 3rkx_A Biotin-[acetyl-COA-carb 52.8 25 0.00086 28.1 5.6 32 13-45 277-308 (323)
62 2m0o_A PHD finger protein 1; t 51.2 7.1 0.00024 26.0 1.7 26 13-38 28-53 (79)
63 3qii_A PHD finger protein 20; 50.2 43 0.0015 22.3 5.5 38 13-55 23-60 (85)
64 2xk0_A Polycomb protein PCL; t 50.1 26 0.00089 22.7 4.2 23 13-35 17-39 (69)
65 1zq1_A Glutamyl-tRNA(Gln) amid 43.6 16 0.00054 31.0 3.1 38 7-44 4-52 (438)
66 3he1_A Major exported HCP3 pro 39.9 28 0.00094 26.3 3.7 72 4-78 99-183 (195)
67 3ggm_A Uncharacterized protein 39.2 49 0.0017 20.4 4.3 35 39-73 4-38 (81)
68 3j20_E 30S ribosomal protein S 37.7 38 0.0013 26.7 4.3 39 29-67 196-236 (243)
69 2d6f_A Glutamyl-tRNA(Gln) amid 37.7 29 0.00099 29.3 3.9 39 5-44 6-52 (435)
70 3eaa_A EVPC; T6SS, unknown fun 35.7 22 0.00074 25.7 2.5 68 4-75 66-140 (163)
71 1o9y_A HRCQ2; secretory protei 34.8 41 0.0014 21.6 3.5 34 13-46 47-80 (84)
72 2qqr_A JMJC domain-containing 32.5 48 0.0016 23.3 3.7 24 13-36 7-30 (118)
73 3uep_A YSCQ-C, type III secret 30.5 46 0.0016 22.1 3.3 33 14-46 52-84 (96)
74 3bfm_A Biotin protein ligase-l 28.1 76 0.0026 23.8 4.5 28 13-45 192-219 (235)
75 3ooq_A Amidohydrolase; structu 27.2 71 0.0024 24.9 4.3 33 39-72 5-37 (396)
76 2qs8_A XAA-Pro dipeptidase; am 27.0 75 0.0026 24.7 4.4 39 34-72 2-41 (418)
77 3iz6_D 40S ribosomal protein S 26.9 79 0.0027 25.2 4.5 47 29-76 192-241 (265)
78 1y12_A Hypothetical protein PA 25.4 46 0.0016 24.0 2.7 69 4-75 68-142 (165)
79 4a8c_A Periplasmic PH-dependen 24.1 1E+02 0.0034 25.3 4.8 31 16-46 88-118 (436)
80 1q38_A Fibronectin; amyloid fi 23.7 71 0.0024 21.4 3.1 32 22-53 45-76 (89)
81 3kl9_A PEPA, glutamyl aminopep 23.5 57 0.0019 26.3 3.2 25 11-35 95-119 (355)
82 1o6a_A Putative flagellar moto 22.5 68 0.0023 21.1 2.9 32 15-46 53-84 (96)
83 3fb9_A Uncharacterized protein 22.2 1.5E+02 0.005 19.9 4.5 30 8-37 18-51 (90)
84 3fso_A Integrin beta-4, GP150; 21.1 49 0.0017 22.6 2.0 32 16-47 71-103 (123)
85 3tjo_A Serine protease HTRA1; 20.9 1.2E+02 0.0041 22.3 4.4 32 15-46 86-117 (231)
86 1ky9_A Protease DO, DEGP, HTRA 20.8 1.4E+02 0.0048 24.6 5.1 31 16-46 111-141 (448)
87 3stj_A Protease DEGQ; serine p 20.6 1.1E+02 0.0037 24.3 4.3 31 16-46 88-118 (345)
88 3sti_A Protease DEGQ; serine p 20.3 1E+02 0.0035 23.3 3.9 31 16-46 88-118 (245)
89 3tee_A Flagella basal BODY P-r 20.2 76 0.0026 24.0 3.1 22 13-34 169-190 (219)
No 1
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=100.00 E-value=5e-38 Score=230.80 Aligned_cols=113 Identities=66% Similarity=1.164 Sum_probs=83.2
Q ss_pred CCcccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCcccccc
Q psy17024 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNA 80 (132)
Q Consensus 1 ms~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd~l~~a 80 (132)
||+++|++||++++|++|+||||||++|+|+|.+||+||||+|+||+++.++++..++++|||||++|+||++||+++++
T Consensus 1 ~~~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd~l~~~ 80 (126)
T 2y9a_D 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNA 80 (126)
T ss_dssp ---CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCSSCSSS
T ss_pred CCcccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEccccccch
Confidence 89999999999999999999999999999999999999999999999998898899999999999999999999999999
Q ss_pred cccccccCC-CCCccCCchhhhhhhhhccCCCCCC
Q psy17024 81 PMFKGKQGN-KAGAAGRGKSGILRAQAARGRGRGG 114 (132)
Q Consensus 81 p~lk~~~~~-~~~~~~~g~~~~~r~~~~rg~grgg 114 (132)
|+|++...+ ++.++++|++++.|+++ ++||||.
T Consensus 81 ~~l~~~~~k~~~~~~~~g~~~~~~~~~-~~~~~~~ 114 (126)
T 2y9a_D 81 PMLKSMKNKNQGSGAGRGKAAILKAQV-AARGRGR 114 (126)
T ss_dssp SHHHHHHHHHC------------------------
T ss_pred HHhhhhhhcccccccCcCchhhhhccc-ccCCCCC
Confidence 999976543 25567899999988874 3444443
No 2
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.97 E-value=4.8e-31 Score=191.37 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=78.0
Q ss_pred cHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCcccccccccc
Q psy17024 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFK 84 (132)
Q Consensus 5 ~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd~l~~ap~lk 84 (132)
.|++||+++++++|+|||+||.+|+|+|.+||+||||+|+||+++..+++..+++++||||++|+||++||+|+.+|+|+
T Consensus 2 ~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~l~~d~~l~ 81 (119)
T 1b34_A 2 KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLV 81 (119)
T ss_dssp CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTTCCHHHHTC
T ss_pred ChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEeccccccchhHh
Confidence 69999999999999999999999999999999999999999999988888899999999999999999999999999998
Q ss_pred cccCC
Q psy17024 85 GKQGN 89 (132)
Q Consensus 85 ~~~~~ 89 (132)
+..++
T Consensus 82 ~~~pK 86 (119)
T 1b34_A 82 DVEPK 86 (119)
T ss_dssp -----
T ss_pred hhccc
Confidence 76555
No 3
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.96 E-value=1.3e-29 Score=170.39 Aligned_cols=75 Identities=71% Similarity=1.292 Sum_probs=70.9
Q ss_pred CCcccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCc
Q psy17024 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPD 75 (132)
Q Consensus 1 ms~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd 75 (132)
||++.|++||++++|++|+||||||++|+|+|.+||+|||++|+||+++.++++..+++++||||++|+||++||
T Consensus 1 ~~~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp ---CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEEEEEECC
T ss_pred CCccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeCCEEEEEEcCC
Confidence 899999999999999999999999999999999999999999999999998888999999999999999999997
No 4
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.96 E-value=5.4e-29 Score=177.64 Aligned_cols=86 Identities=30% Similarity=0.520 Sum_probs=57.4
Q ss_pred ccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCC-ceeecceEEEecCeEEEEecCcccccccc
Q psy17024 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRGSKIRFLILPDMLKNAPM 82 (132)
Q Consensus 4 ~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg-~~~~l~~vfIRGs~Ir~I~lPd~l~~ap~ 82 (132)
..|++||++++|++|+||||||++|+|+|.+||+|||++|+||+++..++ +..+++.+||||++|+||++||++.++|+
T Consensus 15 ~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l~d~p~ 94 (105)
T 4emh_A 15 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQVA 94 (105)
T ss_dssp -----------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC---------
T ss_pred CcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHHhhhhh
Confidence 47999999999999999999999999999999999999999999998888 48899999999999999999999999999
Q ss_pred cccccCC
Q psy17024 83 FKGKQGN 89 (132)
Q Consensus 83 lk~~~~~ 89 (132)
|++.+++
T Consensus 95 ~~~~~~~ 101 (105)
T 4emh_A 95 KQQAQQR 101 (105)
T ss_dssp -------
T ss_pred hhhhccc
Confidence 9987554
No 5
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.90 E-value=7e-24 Score=142.00 Aligned_cols=75 Identities=21% Similarity=0.311 Sum_probs=69.4
Q ss_pred CCcccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCcc
Q psy17024 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDM 76 (132)
Q Consensus 1 ms~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd~ 76 (132)
|| ..|+++|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+++..+++.+||||++|+||++||.
T Consensus 1 m~-~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (77)
T 1i4k_A 1 MP-PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAPG 75 (77)
T ss_dssp ---CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEECC-
T ss_pred CC-ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEeCCC
Confidence 54 4799999999999999999999999999999999999999999999887778999999999999999999985
No 6
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.90 E-value=7.5e-24 Score=141.39 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=68.3
Q ss_pred CCcccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCcc
Q psy17024 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDM 76 (132)
Q Consensus 1 ms~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd~ 76 (132)
|| ..|+++|+++++++|+|+||||++|+|+|.+||+|||++|+||+++..+++..+++.+||||++|+||..||+
T Consensus 1 m~-~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 1 MA-ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp ---CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred CC-chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEEeCCC
Confidence 54 4799999999999999999999999999999999999999999999877778999999999999999999874
No 7
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.90 E-value=8.9e-24 Score=145.32 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=67.9
Q ss_pred CC-cccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCcccc
Q psy17024 1 MS-IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLK 78 (132)
Q Consensus 1 ms-~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd~l~ 78 (132)
|| ...|++||+++++++|+|+||||++|+|+|.+||+|||++|+||+++....+..+++.+||||++|+||++||.-.
T Consensus 1 ms~~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~~~ 79 (86)
T 3s6n_F 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEE 79 (86)
T ss_dssp --CCCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC---
T ss_pred CCcCcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCccc
Confidence 53 6789999999999999999999999999999999999999999998753335789999999999999999998654
No 8
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.90 E-value=1.3e-23 Score=140.94 Aligned_cols=73 Identities=22% Similarity=0.383 Sum_probs=68.3
Q ss_pred ccHHHHHHhhCCCEEEEEEcCC-CEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCcc
Q psy17024 4 GIPIKLLHEAEGHIITCETTNG-DLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDM 76 (132)
Q Consensus 4 ~~Pl~lL~~~~g~~V~VELKnG-~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd~ 76 (132)
-.|+.+|+++++++|+|+|||| ++|+|+|.+||+|||++|+||+++..+++..+++.+||||++|+||++||+
T Consensus 4 ~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 4 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred cchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEEeCCC
Confidence 5899999999999999999999 999999999999999999999999877678999999999999999999984
No 9
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.89 E-value=3.2e-23 Score=138.71 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=67.5
Q ss_pred CCcccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCc
Q psy17024 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPD 75 (132)
Q Consensus 1 ms~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd 75 (132)
|| ..|+++|+++++++|+|+||||++|+|+|.+||+|||++|+||+++..+.+..+++.+||||++|+||...|
T Consensus 1 m~-~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 1 MD-SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp CC-SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGGGSSEEEEC-
T ss_pred CC-CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCCeEEEEEecC
Confidence 55 689999999999999999999999999999999999999999999865546789999999999999998654
No 10
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.88 E-value=1.3e-22 Score=137.47 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=68.5
Q ss_pred ccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCcc
Q psy17024 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDM 76 (132)
Q Consensus 4 ~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd~ 76 (132)
..|+.+|+++++++|+|+|+||++|+|+|.+||+|||++|+||+++..+++..+++.+||||++|+||+.||.
T Consensus 8 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 8 ETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp HHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEEEC--
T ss_pred cchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEEecCC
Confidence 4799999999999999999999999999999999999999999999888788999999999999999999874
No 11
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.88 E-value=1.1e-22 Score=142.00 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=63.0
Q ss_pred cccHHHHHHhhCCCEEEEEEcCC-CEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCc
Q psy17024 3 IGIPIKLLHEAEGHIITCETTNG-DLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPD 75 (132)
Q Consensus 3 ~~~Pl~lL~~~~g~~V~VELKnG-~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd 75 (132)
...|+++|++++|++|+|+|||| ++|+|+|.+||+|||++|+||+++..+++..+++.+||||++|+||..||
T Consensus 19 ~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 19 PVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp -------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEEECC
T ss_pred cCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEEeCC
Confidence 46799999999999999999999 99999999999999999999999976666889999999999999999886
No 12
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.87 E-value=3.1e-22 Score=135.63 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=67.6
Q ss_pred cccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCc
Q psy17024 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPD 75 (132)
Q Consensus 3 ~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd 75 (132)
...|+.+|+++++++|+|+|+||++|+|+|.+||+|||++|+||+++ .+.+..+++.+||||++|+||+.||
T Consensus 9 ~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 9 FATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp -CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEECGGGEEEEEECC
T ss_pred ccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCCEEEECCCEEEEEEeCC
Confidence 45899999999999999999999999999999999999999999999 5566889999999999999999887
No 13
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.86 E-value=9.5e-22 Score=133.93 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=66.9
Q ss_pred cccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEe
Q psy17024 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLI 72 (132)
Q Consensus 3 ~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~ 72 (132)
...|+.+|+++++++|+|+|+||++|+|+|.+||+|||++|+||+++..+++..+++.+||||++|+||+
T Consensus 13 ~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG~~I~~i~ 82 (83)
T 1mgq_A 13 VQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYIS 82 (83)
T ss_dssp TTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEE
T ss_pred CcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECCCEEEEEE
Confidence 5689999999999999999999999999999999999999999999987777899999999999999986
No 14
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.86 E-value=1.7e-21 Score=136.34 Aligned_cols=72 Identities=22% Similarity=0.311 Sum_probs=66.0
Q ss_pred cccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEe-cCCceeecceEEEecCeEEEEecC
Q psy17024 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGKVKPMANIYIRGSKIRFLILP 74 (132)
Q Consensus 3 ~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~-~dg~~~~l~~vfIRGs~Ir~I~lP 74 (132)
...|++||+++++++|+|+||||++|+|+|.+||+|||++|+||+++. .+++...++.+||||++|.||...
T Consensus 18 ~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~ 90 (94)
T 4emk_A 18 TILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPG 90 (94)
T ss_dssp --CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEEC
T ss_pred cccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeC
Confidence 578999999999999999999999999999999999999999999998 556688999999999999999843
No 15
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.85 E-value=1.9e-21 Score=130.46 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=53.8
Q ss_pred CCcccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCcc
Q psy17024 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDM 76 (132)
Q Consensus 1 ms~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd~ 76 (132)
||-. |..+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+++...++.+||||++|.||...|.
T Consensus 1 ms~~-~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 1 MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp --------------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSSSEEEEEC---
T ss_pred CCCc-chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCCeEEEEEeccC
Confidence 5533 77899999999999999999999999999999999999999999877788999999999999999998764
No 16
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.84 E-value=9.3e-21 Score=131.97 Aligned_cols=73 Identities=15% Similarity=0.324 Sum_probs=64.2
Q ss_pred CcccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecC----C---------ceeecceEEEecCeE
Q psy17024 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD----G---------KVKPMANIYIRGSKI 68 (132)
Q Consensus 2 s~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~d----g---------~~~~l~~vfIRGs~I 68 (132)
++..|++||+++++++|+|+|++|.+|+|+|.+||+|||++|+||+++..+ + ....++.+||||++|
T Consensus 6 ~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nV 85 (93)
T 4emg_A 6 AVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSV 85 (93)
T ss_dssp ---CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGE
T ss_pred ccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeE
Confidence 478999999999999999999999999999999999999999999998642 3 357899999999999
Q ss_pred EEEecC
Q psy17024 69 RFLILP 74 (132)
Q Consensus 69 r~I~lP 74 (132)
.+|..|
T Consensus 86 v~I~p~ 91 (93)
T 4emg_A 86 ILIAPP 91 (93)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999865
No 17
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.82 E-value=1.8e-20 Score=138.00 Aligned_cols=76 Identities=16% Similarity=0.298 Sum_probs=70.3
Q ss_pred HHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCcccccccccccc
Q psy17024 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDMLKNAPMFKGK 86 (132)
Q Consensus 7 l~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd~l~~ap~lk~~ 86 (132)
+.+|++++|++|+|+||||++|+|+|.+||+|||++|+||+++. + .+++.+||||++|+||++||...++++|++.
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~--~--~~lg~v~IRG~nI~~I~~~d~~~d~~~f~~~ 77 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA--G--EKFNRVFIMYRYIVHIDSTERRIDMREFAKQ 77 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT--C--CEEEEEEECGGGEEEEEECCCCCCHHHHHHH
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc--C--CEeceEEEeCCeEEEEEcCCcccCHHHHHHH
Confidence 47899999999999999999999999999999999999999873 3 5789999999999999999999999888754
No 18
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.8e-19 Score=125.89 Aligned_cols=79 Identities=15% Similarity=0.281 Sum_probs=67.2
Q ss_pred cccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecC------C-ceeecceEEEecCeEEEEecCc
Q psy17024 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD------G-KVKPMANIYIRGSKIRFLILPD 75 (132)
Q Consensus 3 ~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~d------g-~~~~l~~vfIRGs~Ir~I~lPd 75 (132)
+..|+.+|+++++++|+|+|++|.+|.|+|.+||.|||++|+||+++..+ + ....++.+||||++|.+|..+|
T Consensus 8 ~~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d 87 (96)
T 3bw1_A 8 METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPS 87 (96)
T ss_dssp CCCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC
T ss_pred hhhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecC
Confidence 46799999999999999999999999999999999999999999998643 2 3578999999999999999988
Q ss_pred cccccc
Q psy17024 76 MLKNAP 81 (132)
Q Consensus 76 ~l~~ap 81 (132)
...++.
T Consensus 88 ~~~d~~ 93 (96)
T 3bw1_A 88 EDDDGA 93 (96)
T ss_dssp -----C
T ss_pred cccccc
Confidence 765543
No 19
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.80 E-value=7e-20 Score=132.81 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=66.1
Q ss_pred cccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecC---------C-c-----eeecceEEEecCe
Q psy17024 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD---------G-K-----VKPMANIYIRGSK 67 (132)
Q Consensus 3 ~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~d---------g-~-----~~~l~~vfIRGs~ 67 (132)
...|++||+++++++|+|+|++|++|.|+|.+||+|||++|+||+++..+ + . ...++.+||||++
T Consensus 26 ~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~n 105 (121)
T 2fwk_A 26 IILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNN 105 (121)
T ss_dssp CCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGG
T ss_pred ccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCE
Confidence 46899999999999999999999999999999999999999999998743 4 2 5789999999999
Q ss_pred EEEEecCcc
Q psy17024 68 IRFLILPDM 76 (132)
Q Consensus 68 Ir~I~lPd~ 76 (132)
|.||...+.
T Consensus 106 Vv~I~~~~~ 114 (121)
T 2fwk_A 106 VAMLVPGGD 114 (121)
T ss_dssp EEEEESSSC
T ss_pred EEEEEecCC
Confidence 999998654
No 20
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.79 E-value=1.2e-19 Score=124.90 Aligned_cols=75 Identities=13% Similarity=0.262 Sum_probs=62.3
Q ss_pred CCcccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEec---------C-CceeecceEEEecCeEEE
Q psy17024 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFR---------D-GKVKPMANIYIRGSKIRF 70 (132)
Q Consensus 1 ms~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~---------d-g~~~~l~~vfIRGs~Ir~ 70 (132)
|++ .|..+|+++++++|+|+|+||.+|.|+|.+||+|||++|+||+++.. + .....++.+||||++|.+
T Consensus 1 m~~-~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~ 79 (91)
T 1d3b_B 1 MTV-GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVS 79 (91)
T ss_dssp -------CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEE
T ss_pred CCC-ChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEE
Confidence 443 36788999999999999999999999999999999999999999641 1 236789999999999999
Q ss_pred EecCcc
Q psy17024 71 LILPDM 76 (132)
Q Consensus 71 I~lPd~ 76 (132)
|.+++.
T Consensus 80 i~~~~~ 85 (91)
T 1d3b_B 80 MTVEGP 85 (91)
T ss_dssp EEEEEC
T ss_pred EEcCCC
Confidence 999864
No 21
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.78 E-value=2.8e-19 Score=124.52 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=66.3
Q ss_pred cccHHHHHHhhCCCEEEEEE----cCCCEEEEEEEeeCCccceEEeeEEEEecC-CceeecceEEEecCeEEEEecCc
Q psy17024 3 IGIPIKLLHEAEGHIITCET----TNGDLFRGKLVEAEDNMNCAMADVTVTFRD-GKVKPMANIYIRGSKIRFLILPD 75 (132)
Q Consensus 3 ~~~Pl~lL~~~~g~~V~VEL----KnG~~y~G~L~~~D~~MNi~L~dv~~t~~d-g~~~~l~~vfIRGs~Ir~I~lPd 75 (132)
+..|++||+++++++|+|++ ++|.+|+|+|.+||+|||++|+||+++..+ .+...++.+||||++|.||..+|
T Consensus 14 m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 14 MVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC-
T ss_pred ccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeCC
Confidence 45799999999999999999 999999999999999999999999998744 35788999999999999998654
No 22
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.76 E-value=1.6e-18 Score=125.14 Aligned_cols=74 Identities=14% Similarity=0.328 Sum_probs=63.1
Q ss_pred cccHHHHHHhhC--CCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecC----Cc----------eeecceEEEecC
Q psy17024 3 IGIPIKLLHEAE--GHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD----GK----------VKPMANIYIRGS 66 (132)
Q Consensus 3 ~~~Pl~lL~~~~--g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~d----g~----------~~~l~~vfIRGs 66 (132)
...|++||++++ +++|+|+|+||.+|.|+|.+||+|||++|+||+++... ++ ..+++.+||||+
T Consensus 25 ~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~ 104 (118)
T 1b34_B 25 NTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGD 104 (118)
T ss_dssp -CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGG
T ss_pred ccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCC
Confidence 357999999999 59999999999999999999999999999999987522 11 235999999999
Q ss_pred eEEEEecCcc
Q psy17024 67 KIRFLILPDM 76 (132)
Q Consensus 67 ~Ir~I~lPd~ 76 (132)
+|.||..++.
T Consensus 105 nVv~I~~~~~ 114 (118)
T 1b34_B 105 SVIVVLRNPL 114 (118)
T ss_dssp GEEEEEECCC
T ss_pred EEEEEEeCch
Confidence 9999998765
No 23
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.72 E-value=1.9e-17 Score=119.09 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=56.7
Q ss_pred cHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecC-------CceeecceEEEecCeEEEEecCccc
Q psy17024 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD-------GKVKPMANIYIRGSKIRFLILPDML 77 (132)
Q Consensus 5 ~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~d-------g~~~~l~~vfIRGs~Ir~I~lPd~l 77 (132)
-|+..|.++++++|.|+|++|.+|.|+|.+||.|||++|+||+++..+ .....++.+||||++|.+|..+|.-
T Consensus 23 e~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ 102 (113)
T 4emk_C 23 ESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGS 102 (113)
T ss_dssp ---------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC--
T ss_pred chHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCcc
Confidence 367889999999999999999999999999999999999999998654 2468899999999999999988744
Q ss_pred c
Q psy17024 78 K 78 (132)
Q Consensus 78 ~ 78 (132)
+
T Consensus 103 e 103 (113)
T 4emk_C 103 E 103 (113)
T ss_dssp -
T ss_pred c
Confidence 3
No 24
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.71 E-value=7.4e-17 Score=128.48 Aligned_cols=76 Identities=14% Similarity=0.295 Sum_probs=65.9
Q ss_pred CCcccHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEec----C------CceeecceEEEecCeEEE
Q psy17024 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFR----D------GKVKPMANIYIRGSKIRF 70 (132)
Q Consensus 1 ms~~~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~----d------g~~~~l~~vfIRGs~Ir~ 70 (132)
|+++ +-..|+++++++|+|+|+||++|.|+|.+||+||||+|+||+|+.. + .+..+++.+||||+||.+
T Consensus 1 ~~v~-k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~ 79 (231)
T 3pgw_B 1 MTVG-KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVS 79 (231)
T ss_pred CCcC-chHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEE
Confidence 5543 5678899999999999999999999999999999999999999752 1 246899999999999999
Q ss_pred EecCccc
Q psy17024 71 LILPDML 77 (132)
Q Consensus 71 I~lPd~l 77 (132)
|.+.+--
T Consensus 80 Isve~pP 86 (231)
T 3pgw_B 80 MTVEGPP 86 (231)
T ss_pred EEecCCC
Confidence 9987543
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.67 E-value=7.5e-08 Score=66.23 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=55.4
Q ss_pred cHHHHHHhhCCCEEEEEEcCCCEEEEEEEeeC-CccceEEeeEEEEecCCceeecceEEEecCeEEEEecCccc
Q psy17024 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAE-DNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDML 77 (132)
Q Consensus 5 ~Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D-~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd~l 77 (132)
.|+ -|+.++||.|.|.|.||++|+|.|.++| ...|++|.|+ ..+ .++..++|.|+.|..|.+-+.-
T Consensus 8 ~p~-el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~---~~~---~~~~~~iI~G~aI~eI~v~~~~ 74 (86)
T 1y96_A 8 GPL-EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF---LED---GSMSVTGIMGHAVQTVETMNEG 74 (86)
T ss_dssp CHH-HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE---CTT---SCEEEEEECGGGEEEEEEEECC
T ss_pred CHH-HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec---ccC---CeEEEEEEecceEEEEEEecch
Confidence 355 5789999999999999999999999999 8999999998 223 3447899999999998874443
No 26
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.05 E-value=0.0032 Score=43.21 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=53.5
Q ss_pred hCCCEEEEEEcCCCEEEEEEEeeC-CccceEEeeEEEEecCCc---------eeecceEEEecCeEEEEecCc
Q psy17024 13 AEGHIITCETTNGDLFRGKLVEAE-DNMNCAMADVTVTFRDGK---------VKPMANIYIRGSKIRFLILPD 75 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~~D-~~MNi~L~dv~~t~~dg~---------~~~l~~vfIRGs~Ir~I~lPd 75 (132)
.+|+.|++-.|++..|.|+|..+| +.--+.|+||....-+++ ..-++.+.-||+.|+-+.+-+
T Consensus 11 yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~ 83 (88)
T 2vxe_A 11 ELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVN 83 (88)
T ss_dssp CTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECC
T ss_pred ccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEec
Confidence 589999999999999999999999 577899999998765553 245788999999999987643
No 27
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.66 E-value=0.0032 Score=43.82 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=54.5
Q ss_pred HHHhhCCCEEEEEEcCCCEEEEEEEeeC-CccceEEeeEEEEecCCc---------eeecceEEEecCeEEEEecCc
Q psy17024 9 LLHEAEGHIITCETTNGDLFRGKLVEAE-DNMNCAMADVTVTFRDGK---------VKPMANIYIRGSKIRFLILPD 75 (132)
Q Consensus 9 lL~~~~g~~V~VELKnG~~y~G~L~~~D-~~MNi~L~dv~~t~~dg~---------~~~l~~vfIRGs~Ir~I~lPd 75 (132)
--..++|+.|++-.|++..|.|+|..+| +.--+.|+||....-+++ ..-++.+..||+-|+-+.+-+
T Consensus 13 ~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 13 GGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp ---CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred ccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 3456799999999999999999999999 577899999988765543 245789999999999988744
No 28
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.58 E-value=0.0061 Score=44.25 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=41.0
Q ss_pred HHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEE--eeEEEEecCCceeecceEEEecCeEEEEec
Q psy17024 10 LHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAM--ADVTVTFRDGKVKPMANIYIRGSKIRFLIL 73 (132)
Q Consensus 10 L~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L--~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~l 73 (132)
+.+++|..|.|+|++|..|+|+|..||. -++.| ++|+... ..|+.+.|.-+.+
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~~s~----------~~I~asdI~DLkV 61 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDS-SNSILQLRLANDST----------KSIVTKDIKDLRI 61 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETTTEE----------EEEEGGGEEEEEE
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecC-CeeEEecccccccc----------ceeecccccceee
Confidence 3578999999999999999999999984 35555 9884321 2788888876554
No 29
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=96.51 E-value=0.0072 Score=41.13 Aligned_cols=59 Identities=12% Similarity=0.264 Sum_probs=50.2
Q ss_pred hhCCCEEEEEEcCCC-EEEEEEEeeCC-ccceEEeeEEEEecCCceeecceEEEecCeEEEEec
Q psy17024 12 EAEGHIITCETTNGD-LFRGKLVEAED-NMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLIL 73 (132)
Q Consensus 12 ~~~g~~V~VELKnG~-~y~G~L~~~D~-~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~l 73 (132)
+.+|+.|+|+.+++. +|.|.|..+|. .-|+.|.+|. ++|-+.+..+|.++++-|.-+-+
T Consensus 6 ~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~~~~s~eVtls~~DI~~L~i 66 (84)
T 2vc8_A 6 DWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGVKCLVPEVTFRAGDITELKI 66 (84)
T ss_dssp TTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTEECSSSEEEEEGGGCSEEEE
T ss_pred cccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCCCCCCcEEEEEecChhheEE
Confidence 568999999999999 99999999996 5689999994 68876677789999987765554
No 30
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.34 E-value=0.024 Score=38.60 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=53.3
Q ss_pred HHHHHHhhCCCEEEEEEcCCCEEEEEEEeeC-CccceEEeeEEEEecCCceeecceEEEecCeEEEEec
Q psy17024 6 PIKLLHEAEGHIITCETTNGDLFRGKLVEAE-DNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLIL 73 (132)
Q Consensus 6 Pl~lL~~~~g~~V~VELKnG~~y~G~L~~~D-~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~l 73 (132)
-|.+|..+.|++|.+.|+...++.|+..++| +..|+..+|.. .+=| .+++..+|.+-|..+.+
T Consensus 20 fLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~--TPiG---v~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 20 YLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ--TPIG---VQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC--CTTC---CEEEEEEEGGGEEEEEE
T ss_pred HHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC--CCcc---cchhhhhhcCCEEEEEe
Confidence 3788999999999999999999999999999 57799988852 2333 46789999999998876
No 31
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.28 E-value=0.0058 Score=40.57 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=42.6
Q ss_pred HHHHHhhC--CCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCc
Q psy17024 7 IKLLHEAE--GHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPD 75 (132)
Q Consensus 7 l~lL~~~~--g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd 75 (132)
-.||+.+. ..+|+|.|.||..++|++..+|.|+=+.- ++ ...+|-=..|.+|..-.
T Consensus 11 d~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~--------~~-----~~~LIYKhAIsTI~p~~ 68 (74)
T 2ylb_A 11 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK--------NT-----VSQMVYKHAISTVVPSR 68 (74)
T ss_dssp HHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE--------SS-----SEEEEEGGGEEEEEESS
T ss_pred HHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE--------CC-----ceEEEEeeeEEEEeEcc
Confidence 45777764 88999999999999999999999974432 11 24577777888877433
No 32
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=95.97 E-value=0.016 Score=38.76 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=41.5
Q ss_pred HHHHHhhC--CCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEec
Q psy17024 7 IKLLHEAE--GHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLIL 73 (132)
Q Consensus 7 l~lL~~~~--g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~l 73 (132)
-.||+.+. ..+|+|.|.||..++|++.++|.|+=+.-. +++ +.+|-=..|.+|..
T Consensus 9 d~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~-------~g~-----~qLIYKhAISTI~p 65 (77)
T 1kq1_A 9 DKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNS-------QGK-----QHLIYKHAISTYTV 65 (77)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEE-------TTE-----EEEEEGGGEEEEEC
T ss_pred HHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEE-------CCe-----eEEEEeeeEEEEeE
Confidence 35677775 899999999999999999999999754432 343 34566677777764
No 33
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=95.90 E-value=0.011 Score=40.06 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=42.7
Q ss_pred HHHHHhh--CCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCccc
Q psy17024 7 IKLLHEA--EGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDML 77 (132)
Q Consensus 7 l~lL~~~--~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd~l 77 (132)
-.||+.+ ...+|+|-|.||..++|++.+||.|+=+.- + + .+.+|-=..|..|..-..+
T Consensus 9 d~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~-~-------~-----~qqLVYKHAISTI~p~~~v 68 (82)
T 1u1s_A 9 DPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK-N-------T-----VSQMVYKHAISTVVPSRPV 68 (82)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE-S-------S-----SCEEEEGGGEEEEEESSCC
T ss_pred HHHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe-c-------C-----ceEEEEeeeeEEEeecccc
Confidence 3567766 488999999999999999999999974432 1 2 2456777788887754433
No 34
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=95.73 E-value=0.019 Score=38.53 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=41.4
Q ss_pred HHHHhhC--CCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCc
Q psy17024 8 KLLHEAE--GHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPD 75 (132)
Q Consensus 8 ~lL~~~~--g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd 75 (132)
.+|+.+. ..+|+|-|.||..++|++.+||.|+=+.- .+++ +.+|-=..|..|..-.
T Consensus 14 ~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~-------~~g~-----qqlIYKhAISTI~p~~ 71 (78)
T 3ahu_A 14 QFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLE-------SEGK-----QQLIYKHAISTFAPQK 71 (78)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE-------SSSC-----EEEEEGGGEEEEEESS
T ss_pred HHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEE-------ECCe-----eEEEEcceEEEEeecc
Confidence 4666664 89999999999999999999999975443 2443 2356666777776444
No 35
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=95.64 E-value=0.011 Score=41.74 Aligned_cols=58 Identities=9% Similarity=0.056 Sum_probs=43.2
Q ss_pred HHHHHhhC--CCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCccc
Q psy17024 7 IKLLHEAE--GHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDML 77 (132)
Q Consensus 7 l~lL~~~~--g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd~l 77 (132)
-.||+.+. ..+|+|.|.||..++|++.++|.|+=|.- ++ .+.+|-=..|.+|..-..+
T Consensus 11 d~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~--------~~-----kqqLIYKHAISTI~p~~~v 70 (104)
T 2y90_A 11 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK--------NT-----VSQMVYKHAISTVVPSRPV 70 (104)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE--------SS-----SEEEEEGGGEEEEEESSCC
T ss_pred HHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE--------CC-----ceEEEEeeeeEEEeecccc
Confidence 35677764 45999999999999999999999975443 12 2466777888988854433
No 36
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=95.29 E-value=0.031 Score=37.51 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=41.7
Q ss_pred HHHHhh--CCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEecCcc
Q psy17024 8 KLLHEA--EGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLILPDM 76 (132)
Q Consensus 8 ~lL~~~--~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lPd~ 76 (132)
.||..+ ...+|+|.|.||..++|++.++|.|+=|. + +++ +.+|-=..|.+|..-..
T Consensus 11 ~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL-~-------~g~-----~qLIYKhAISTI~P~~~ 68 (79)
T 3sb2_A 11 PFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL-R-------NTV-----TQMVYKHAISTVVPARA 68 (79)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE-E-------SSS-----EEEEEGGGEEEEEESSC
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE-E-------CCc-----eEEEEeeeEEEEeecCc
Confidence 456655 56789999999999999999999997553 2 343 34677778888775433
No 37
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=94.99 E-value=0.054 Score=35.67 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=26.3
Q ss_pred CCCEEEEEEcCCCEEEEEEEeeCCccceE
Q psy17024 14 EGHIITCETTNGDLFRGKLVEAEDNMNCA 42 (132)
Q Consensus 14 ~g~~V~VELKnG~~y~G~L~~~D~~MNi~ 42 (132)
...+|+|-|.||..++|++.++|.|+=+.
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll 52 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMV 52 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 67899999999999999999999997544
No 38
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=94.47 E-value=0.12 Score=33.98 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=34.5
Q ss_pred cccH-HHHHHhh--CCCEEEEEEcCCCEEEEEEEeeCCccceEE
Q psy17024 3 IGIP-IKLLHEA--EGHIITCETTNGDLFRGKLVEAEDNMNCAM 43 (132)
Q Consensus 3 ~~~P-l~lL~~~--~g~~V~VELKnG~~y~G~L~~~D~~MNi~L 43 (132)
.++| +.+||+. ...+|+|+|-||..+.|.|.-.|.++=|..
T Consensus 6 t~lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~ 49 (70)
T 3hfo_A 6 SGLPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLV 49 (70)
T ss_dssp CSCHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred CCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEE
Confidence 4566 7788887 578999999999999999999999886554
No 39
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=93.63 E-value=0.24 Score=32.58 Aligned_cols=42 Identities=17% Similarity=0.396 Sum_probs=34.2
Q ss_pred cccH-HHHHHhh--CCCEEEEEEcCCCEEEEEEEeeCCccceEEe
Q psy17024 3 IGIP-IKLLHEA--EGHIITCETTNGDLFRGKLVEAEDNMNCAMA 44 (132)
Q Consensus 3 ~~~P-l~lL~~~--~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~ 44 (132)
.++| +.+||+. ...+|+|+|-||..+.|+|.-.|.++=|...
T Consensus 8 t~lPsvR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~ 52 (72)
T 3hfn_A 8 TSLPSIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIAD 52 (72)
T ss_dssp -CHHHHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC
T ss_pred CCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEc
Confidence 3556 7888887 5678999999999999999999998865543
No 40
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=92.56 E-value=0.77 Score=29.79 Aligned_cols=62 Identities=23% Similarity=0.392 Sum_probs=42.8
Q ss_pred HHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCceeecceEEEecCeEEEEec
Q psy17024 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLIL 73 (132)
Q Consensus 7 l~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~l 73 (132)
-+.|.+-.|++|-|-.-....++|+|..||+-. +.|+||+-.. | .+-.++.|+=+-|.+|.|
T Consensus 8 dktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~--G--Nk~k~liv~idDinWimL 69 (71)
T 1ycy_A 8 EKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI--G--NRGKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETT--E--EEEEEEEEEGGGEEEEEE
T ss_pred HHHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHh--c--cccceeEEEeccceEEEe
Confidence 467889999999999999999999999999864 7789987543 2 223356666566665554
No 41
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=91.07 E-value=1.5 Score=30.50 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=49.6
Q ss_pred hhCCCEEEEEEcCCC-EEEEEEEeeCCccceEEeeEEEEecCCc--eeecceEEEecCeEEEEecC
Q psy17024 12 EAEGHIITCETTNGD-LFRGKLVEAEDNMNCAMADVTVTFRDGK--VKPMANIYIRGSKIRFLILP 74 (132)
Q Consensus 12 ~~~g~~V~VELKnG~-~y~G~L~~~D~~MNi~L~dv~~t~~dg~--~~~l~~vfIRGs~Ir~I~lP 74 (132)
+.+|+.|+|...+.- +|.|.+..+|. -++.|.++. ++|- ..+..+|.++..-|.-+-|-
T Consensus 9 dwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaF---rNGiplk~~~~EVtLsa~DI~~L~II 70 (103)
T 2rm4_A 9 DWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAF---RNGVPLRKQNAEVVLKCTDIRSIDLI 70 (103)
T ss_dssp GGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEE---ETTEECSCSSSCEEEETTTEEEEEEE
T ss_pred ceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhh---hcCcCcCCCCceEEEEecchhheeee
Confidence 578999999999998 99999999995 448888875 5886 67788999999988877663
No 42
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=82.88 E-value=1.7 Score=32.09 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.6
Q ss_pred HHhhCCCEEEEEEc----CCCEEEEEEEeeCCc
Q psy17024 10 LHEAEGHIITCETT----NGDLFRGKLVEAEDN 38 (132)
Q Consensus 10 L~~~~g~~V~VELK----nG~~y~G~L~~~D~~ 38 (132)
+..++|+.|.|+|+ +...++|+|.++|+.
T Consensus 99 f~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 99 VAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 44679999999994 458999999999975
No 43
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=82.15 E-value=6.9 Score=27.03 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=42.0
Q ss_pred EEEEcCCCEEEEEEEeeCCccceEEeeEEEEec----CCc-----------eeecceEEEecCeEEEEecC
Q psy17024 19 TCETTNGDLFRGKLVEAEDNMNCAMADVTVTFR----DGK-----------VKPMANIYIRGSKIRFLILP 74 (132)
Q Consensus 19 ~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~----dg~-----------~~~l~~vfIRGs~Ir~I~lP 74 (132)
.|+|++|+.+-+.+..-|+. +.++|..+... +|+ .+.-+++.||-+.|.++.-+
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~ 75 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSP 75 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECB
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeC
Confidence 68999999999999987774 89999776542 221 34578899999999998865
No 44
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=79.20 E-value=3 Score=32.82 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=29.9
Q ss_pred hCCCEEEEEEcCCCEEEEEEEeeCCccceEEee
Q psy17024 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMAD 45 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~d 45 (132)
..|++|+|++.++++++|+...+|+.=.+.|++
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~ 254 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDV 254 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEE
Confidence 369999999988999999999999999988874
No 45
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=75.86 E-value=2.2 Score=32.67 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=34.2
Q ss_pred hCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCC-ceeecceEEEec
Q psy17024 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG-KVKPMANIYIRG 65 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg-~~~~l~~vfIRG 65 (132)
..|+.|+|+..++ ++|+...+|+.=.+.|++ .+| +.....+|.+|.
T Consensus 186 ~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~-----~~G~~~~~~Gev~~r~ 232 (233)
T 2eay_A 186 YLGEEVKLLGEGK--ITGKLVGLSEKGGALILT-----EEGIKEILSGEFSLRR 232 (233)
T ss_dssp TTTSEEEETTEEE--EEEEEEEECTTSCEEEEE-----TTEEEEECSCCEEEC-
T ss_pred ccCCEEEEEECCe--EEEEEEEECCCCeEEEEE-----CCCeEEEEEeEEEEec
Confidence 3799999987665 999999999999998875 233 234456677664
No 46
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=71.24 E-value=5.2 Score=31.12 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=29.9
Q ss_pred HHHHHhhCCCEEEEEEcCCCEEEEEEEeeCCccc
Q psy17024 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMN 40 (132)
Q Consensus 7 l~lL~~~~g~~V~VELKnG~~y~G~L~~~D~~MN 40 (132)
+.+=++++|+.+..++.+|..+.|.|+++|.|+=
T Consensus 17 ~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~G 50 (219)
T 3uby_A 17 VPLARAFLGQVLVRRLPNGTELRGRIVETEAYLG 50 (219)
T ss_dssp HHHHHHTTTCEEEEECTTSCEEEEEEEEEEEECS
T ss_pred HHHHHHhCCCEEEEEcCCCCEEEEEEEEEeeccC
Confidence 4566779999999999999999999999999873
No 47
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=69.01 E-value=14 Score=28.17 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=28.4
Q ss_pred hCCCEEEEEEcCCCEEEEEEEeeCCccceEEee
Q psy17024 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMAD 45 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~d 45 (132)
..|+.|+|+..+++.++|+...+|+.-.+. ++
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 479999999988887999999999998887 54
No 48
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.66 E-value=23 Score=22.86 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCCEEEEEEEeeCCc
Q psy17024 14 EGHIITCETTNGDLFRGKLVEAEDN 38 (132)
Q Consensus 14 ~g~~V~VELKnG~~y~G~L~~~D~~ 38 (132)
+|+.|...-++|..|-||+..||..
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 6899999999999999999999965
No 49
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=66.37 E-value=8.4 Score=24.21 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCCEEEEEEEeeCCc
Q psy17024 14 EGHIITCETTNGDLFRGKLVEAEDN 38 (132)
Q Consensus 14 ~g~~V~VELKnG~~y~G~L~~~D~~ 38 (132)
+|+-|.+.-.+|.-|-||++++|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 6889999999999999999999865
No 50
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=66.04 E-value=4.4 Score=31.11 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=24.0
Q ss_pred CCCEEEEEEcCCCEEEEEEEeeCCccceEEee
Q psy17024 14 EGHIITCETTNGDLFRGKLVEAEDNMNCAMAD 45 (132)
Q Consensus 14 ~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~d 45 (132)
.|+.|+|+..++ ++|+...+|+.=.+.|++
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999998776 999999999999999875
No 51
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=63.90 E-value=15 Score=29.05 Aligned_cols=46 Identities=7% Similarity=-0.133 Sum_probs=34.0
Q ss_pred hCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCc-eeecceEEEe
Q psy17024 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGK-VKPMANIYIR 64 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~-~~~l~~vfIR 64 (132)
..|+.|+|+..+ .++.|+...+|+.=.+.|++ .+|. ....++|.+|
T Consensus 271 ~~g~~V~v~~~~-~~~~G~~~gid~~G~L~v~~-----~~g~~~~~~Gev~~r 317 (321)
T 1bia_A 271 FINRPVKLIIGD-KEIFGISRGIDKQGALLLEQ-----DGIIKPWMGGEISLR 317 (321)
T ss_dssp TTTSEEEEEETT-EEEEEEEEEECTTSCEEEEE-----TTEEEEESSCEEEEC
T ss_pred hcCCEEEEEECC-cEEEEEEEEECCCCeEEEEE-----CCCEEEEEeeeEEEe
Confidence 479999999765 58999999999999998874 2331 2344566665
No 52
>3v4h_A Hypothetical protein; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 2.10A {Yersinia pestis}
Probab=62.82 E-value=15 Score=27.36 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=46.6
Q ss_pred ccHHHHHHhhCCCEE-EEEEcCCCEEEEEEEeeCCccceEEeeEEEEec------CCceeecceEEEecCeEEEEecCc
Q psy17024 4 GIPIKLLHEAEGHII-TCETTNGDLFRGKLVEAEDNMNCAMADVTVTFR------DGKVKPMANIYIRGSKIRFLILPD 75 (132)
Q Consensus 4 ~~Pl~lL~~~~g~~V-~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~------dg~~~~l~~vfIRGs~Ir~I~lPd 75 (132)
..|+-+..-+.|+.+ +|+|+--+. -|. -+.|+++.|+||.++.- ++....++.|.++=..|.+-+.|.
T Consensus 89 aSP~L~~a~~~Ge~l~~v~i~~~R~-gG~---~~~Y~~i~L~~v~Issis~~~~~~~~~~p~E~vsl~Y~kI~w~y~~q 163 (185)
T 3v4h_A 89 ASPNLLSYCLLGKHIKNVQFVLRKA-GGD---PLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQ 163 (185)
T ss_dssp THHHHHHHHHHTCCEEEEEEEEEC--------CCEEEEEEEEEEEEEEEEEEEESCC--CCEEEEEEECSEEEEEEEEC
T ss_pred chHHHHHHHhCCCccCcEEEEEEEC-CCC---eEEEEEEEEEeEEEEEEEecccCCCCCceEEEEEEEeCEEEEEEEEE
Confidence 356655555678888 788877665 553 57899999999999752 223457788999999998877654
No 53
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=59.24 E-value=28 Score=22.15 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=29.3
Q ss_pred hCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCce
Q psy17024 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKV 55 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~ 55 (132)
.+|..|...-.++.-|.++|.++++. ...+++..||..
T Consensus 8 ~vGd~vmArW~D~~yYpA~I~si~~~-----~~Y~V~F~dG~~ 45 (67)
T 3p8d_A 8 QINEQVLACWSDCRFYPAKVTAVNKD-----GTYTVKFYDGVV 45 (67)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECTT-----SEEEEEETTSCE
T ss_pred ccCCEEEEEcCCCCEeeEEEEEECCC-----CeEEEEEeCCce
Confidence 36888888888999999999999987 235555556643
No 54
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.94 E-value=30 Score=21.98 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=23.2
Q ss_pred CCCEEEEEEcCCCEEEEEEEeeCCc
Q psy17024 14 EGHIITCETTNGDLFRGKLVEAEDN 38 (132)
Q Consensus 14 ~g~~V~VELKnG~~y~G~L~~~D~~ 38 (132)
+|+-|...-++|..|-|++..||..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 6889999999999999999999975
No 55
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=58.51 E-value=20 Score=25.45 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=22.8
Q ss_pred EcCCCEEEEEE---EeeCCccceEEeeEEEEec
Q psy17024 22 TTNGDLFRGKL---VEAEDNMNCAMADVTVTFR 51 (132)
Q Consensus 22 LKnG~~y~G~L---~~~D~~MNi~L~dv~~t~~ 51 (132)
+|+..+++|.| ..||+.|.+.|+|+++...
T Consensus 55 vksk~sfKG~L~tYrfcDnVWtfilkd~~fk~~ 87 (121)
T 1nh2_D 55 TQSKLTVKGNLDTYGFCDDVWTFIVKNCQVTVE 87 (121)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred hccCCeEEeeeccccccCcEEEEEEeceEEEec
Confidence 34445666776 4689999999999998754
No 56
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=57.07 E-value=11 Score=25.91 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=19.5
Q ss_pred HHHhhCC-CEEEEEEcCCCEEEEEEE
Q psy17024 9 LLHEAEG-HIITCETTNGDLFRGKLV 33 (132)
Q Consensus 9 lL~~~~g-~~V~VELKnG~~y~G~L~ 33 (132)
++..+.| ..|.|||.+|+.+.||+.
T Consensus 21 ~~~~LdGq~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 21 WVKLLDGQERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp HHHTSCTTCEEEEEETTSCEEEEEES
T ss_pred HHHhhCCeeEEEEEEcCCCeEeeeec
Confidence 3344444 579999999999999985
No 57
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=54.66 E-value=26 Score=24.33 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=21.3
Q ss_pred cCCCEEEEEE---EeeCCccceEEeeEEEEe
Q psy17024 23 TNGDLFRGKL---VEAEDNMNCAMADVTVTF 50 (132)
Q Consensus 23 KnG~~y~G~L---~~~D~~MNi~L~dv~~t~ 50 (132)
|+..++.|.| ..||+.|.+.|+|+++..
T Consensus 52 ksk~sfKG~L~tYrfcDnVWTf~lkd~~fk~ 82 (108)
T 1nvp_D 52 RNRVNFRGSLNTYRFCDNVWTFVLNDVEFRE 82 (108)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ccCCeEeeccCCccccCcEEEEEEeceEEEe
Confidence 3445555655 368999999999999875
No 58
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=53.69 E-value=6.3 Score=26.29 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=18.9
Q ss_pred hhCCCEEEEEEcCCCEEEEEEEe
Q psy17024 12 EAEGHIITCETTNGDLFRGKLVE 34 (132)
Q Consensus 12 ~~~g~~V~VELKnG~~y~G~L~~ 34 (132)
.+.+.+|+|+||||+++.|+...
T Consensus 22 c~~~~~l~l~l~dGe~~~g~a~D 44 (86)
T 1sg5_A 22 CQHHLMLTLELKDGEKLQAKASD 44 (86)
T ss_dssp HTTTTCEEEECTTTCCEEESSCE
T ss_pred HHcCCeEEEEEeCCCEEEEEEEe
Confidence 35788999999999999886543
No 59
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=53.35 E-value=18 Score=23.15 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCCEEEEEEEeeCCc
Q psy17024 14 EGHIITCETTNGDLFRGKLVEAEDN 38 (132)
Q Consensus 14 ~g~~V~VELKnG~~y~G~L~~~D~~ 38 (132)
+|..|...-.+|..|.|++.+++..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 6889999999999999999999974
No 60
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.07 E-value=37 Score=21.76 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=26.9
Q ss_pred CCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCC
Q psy17024 14 EGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53 (132)
Q Consensus 14 ~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg 53 (132)
+|..|.-.-.||.-|+++|.++++. ..+++...|.
T Consensus 12 vGd~clA~wsDg~~Y~A~I~~v~~~-----~~~~V~f~Dy 46 (74)
T 2equ_A 12 AGEEVLARWTDCRYYPAKIEAINKE-----GTFTVQFYDG 46 (74)
T ss_dssp TTCEEEEECSSSSEEEEEEEEESTT-----SSEEEEETTS
T ss_pred CCCEEEEECCCCCEEEEEEEEECCC-----CEEEEEEecC
Confidence 5778888888999999999999875 2355555555
No 61
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=52.76 E-value=25 Score=28.06 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=27.1
Q ss_pred hCCCEEEEEEcCCCEEEEEEEeeCCccceEEee
Q psy17024 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMAD 45 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~d 45 (132)
..|++|+|+.. +.++.|+...+|+.=.+.|++
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 47999999865 568999999999999999875
No 62
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=51.17 E-value=7.1 Score=25.96 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.9
Q ss_pred hCCCEEEEEEcCCCEEEEEEEeeCCc
Q psy17024 13 AEGHIITCETTNGDLFRGKLVEAEDN 38 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~~D~~ 38 (132)
.+|+-|.+.-++|..|-||++++|..
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccC
Confidence 47899999999999999999999975
No 63
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=50.24 E-value=43 Score=22.33 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=29.7
Q ss_pred hCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeEEEEecCCce
Q psy17024 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGKV 55 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg~~ 55 (132)
.+|..|.-.-.++..|.++|.+++.. ...+++..||..
T Consensus 23 ~vGd~VlArW~D~~yYPAkI~sV~~~-----~~YtV~F~DG~~ 60 (85)
T 3qii_A 23 QINEQVLACWSDCRFYPAKVTAVNKD-----GTYTVKFYDGVV 60 (85)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECTT-----SEEEEEETTSCE
T ss_pred ccCCEEEEEeCCCCEeeEEEEEECCC-----CeEEEEEeCCCe
Confidence 47889999998999999999999987 235555566643
No 64
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=50.05 E-value=26 Score=22.65 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=20.1
Q ss_pred hCCCEEEEEEcCCCEEEEEEEee
Q psy17024 13 AEGHIITCETTNGDLFRGKLVEA 35 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~~ 35 (132)
.+|+-|.++-+||..|-||+++.
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~ 39 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQ 39 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEE
T ss_pred ccCCeEEEEecCCCEEEEEEEec
Confidence 47899999999999999999543
No 65
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=43.57 E-value=16 Score=31.02 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=28.4
Q ss_pred HHHHHhhC---CCEEEEEEcCC---CEEEEEEEe-eC----CccceEEe
Q psy17024 7 IKLLHEAE---GHIITCETTNG---DLFRGKLVE-AE----DNMNCAMA 44 (132)
Q Consensus 7 l~lL~~~~---g~~V~VELKnG---~~y~G~L~~-~D----~~MNi~L~ 44 (132)
.++|.+.. |..|.|+.+++ .+|+|+|.- .+ ++.=+.|+
T Consensus 4 ~~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~ 52 (438)
T 1zq1_A 4 DEFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLE 52 (438)
T ss_dssp HHHHHHTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEET
T ss_pred HHHHHhcCCCCCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEcc
Confidence 46777765 99999999998 799999994 33 44445554
No 66
>3he1_A Major exported HCP3 protein; structural genomics, APC22128, HCPC, secretion, virule 2, protein structure initiative; 2.10A {Pseudomonas aeruginosa}
Probab=39.91 E-value=28 Score=26.28 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=49.4
Q ss_pred ccHHHHHHhhCCCEE-EEEEcCCCEE-EEEEEeeCCccceEEeeEEEEecC----------C-ceeecceEEEecCeEEE
Q psy17024 4 GIPIKLLHEAEGHII-TCETTNGDLF-RGKLVEAEDNMNCAMADVTVTFRD----------G-KVKPMANIYIRGSKIRF 70 (132)
Q Consensus 4 ~~Pl~lL~~~~g~~V-~VELKnG~~y-~G~L~~~D~~MNi~L~dv~~t~~d----------g-~~~~l~~vfIRGs~Ir~ 70 (132)
..|+-+..-+.|+.+ +++|+--+.- .|. -+.|+++.|+||.++.-+ + ....++.|.++=..|.+
T Consensus 99 ASP~L~~A~~~Ge~l~~v~l~~yR~~~~G~---~~~Y~~i~L~~v~Issi~~~~~~~~~~~~~~~~p~E~Vsl~Y~kI~w 175 (195)
T 3he1_A 99 ASPLLLAALTSGERLTKVEIQWYRTSAAGT---QEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITW 175 (195)
T ss_dssp SHHHHHHHHHHTCEEEEEEEEEEEECTTSS---EEEEEEEEEEEEEEEEEEEEEC---------CCEEEEEEEECSEEEE
T ss_pred chHHHHHHHhCCCccceEEEEEEEeCCCCc---eEEEEEEEEeeeEEEEEEecccccccCCCCCCcceEEEEEEeCEEEE
Confidence 356666666688888 7888732221 132 457999999999997521 1 23578899999999999
Q ss_pred EecCcccc
Q psy17024 71 LILPDMLK 78 (132)
Q Consensus 71 I~lPd~l~ 78 (132)
-+.+....
T Consensus 176 ~y~~~~~~ 183 (195)
T 3he1_A 176 THEVSGTS 183 (195)
T ss_dssp EETTTCCE
T ss_pred EEEcCCCE
Confidence 88876543
No 67
>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian}
Probab=39.19 E-value=49 Score=20.35 Aligned_cols=35 Identities=14% Similarity=0.005 Sum_probs=25.6
Q ss_pred cceEEeeEEEEecCCceeecceEEEecCeEEEEec
Q psy17024 39 MNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLIL 73 (132)
Q Consensus 39 MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~l 73 (132)
+.+.++|+++...++.......+.|.+..|..|.-
T Consensus 4 ~~~li~n~~i~~~~~~~~~~~~i~I~~g~I~~ig~ 38 (81)
T 3ggm_A 4 PDMILYNGKITTLDPSQPEVSAIAITDGLITAVGG 38 (81)
T ss_dssp CSEEEESSEEECSCTTCSEESEEEEETTEEEEEES
T ss_pred CCEEEECCEEEeCCCCCccccEEEEECCEEEEEeC
Confidence 45678888887665543345679999999999864
No 68
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.74 E-value=38 Score=26.66 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=26.3
Q ss_pred EEEEEeeCCccceEEeeEEEEecCCc--eeecceEEEecCe
Q psy17024 29 RGKLVEAEDNMNCAMADVTVTFRDGK--VKPMANIYIRGSK 67 (132)
Q Consensus 29 ~G~L~~~D~~MNi~L~dv~~t~~dg~--~~~l~~vfIRGs~ 67 (132)
.|++.+++.+.--.-+-|.+.+.+|. ...++.|||=|.+
T Consensus 196 iG~I~~ie~~~gs~~~~V~v~d~~g~~F~T~~~~vfvIGk~ 236 (243)
T 3j20_E 196 KGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGTD 236 (243)
T ss_dssp EEEEEECCCCCSSSCCEEEEEESSCCCEEEETTTEEEEESS
T ss_pred EEEEEEEEEecCCCceEEEEEcCCCCEEEEEeceEEEECCC
Confidence 39999998765544444555555663 4678889988854
No 69
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=37.65 E-value=29 Score=29.33 Aligned_cols=39 Identities=18% Similarity=0.387 Sum_probs=28.8
Q ss_pred cHHHHHHhhC---CCEEEEEEcCCCEEEEEEEe-eC----CccceEEe
Q psy17024 5 IPIKLLHEAE---GHIITCETTNGDLFRGKLVE-AE----DNMNCAMA 44 (132)
Q Consensus 5 ~Pl~lL~~~~---g~~V~VELKnG~~y~G~L~~-~D----~~MNi~L~ 44 (132)
.-.++|.+.. |..|.|+.++ .+|+|+|+- .+ ++.=+.|+
T Consensus 6 ~~~~~~~~~~~~~gd~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~kl~ 52 (435)
T 2d6f_A 6 RARKFLESASIDVGDMVLVEKPD-VTYEGMVLDRADDADDRHIVLKLE 52 (435)
T ss_dssp HHHHHHHTTTCCTTCEEEEECSS-CEEEEEECCCCTTSCSSEEEEECT
T ss_pred HHHHHHHHcCCCCCCEEEEEECC-eEEEEEEecCcccCCCCeEEEEcc
Confidence 3457788765 9999999887 999999994 33 45555554
No 70
>3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} SCOP: b.157.1.0
Probab=35.73 E-value=22 Score=25.71 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=44.3
Q ss_pred ccHHHHHHhhCCCEE-EEEEcCCCEEEEEEEeeCCccceEEeeEEEEec------CCceeecceEEEecCeEEEEecCc
Q psy17024 4 GIPIKLLHEAEGHII-TCETTNGDLFRGKLVEAEDNMNCAMADVTVTFR------DGKVKPMANIYIRGSKIRFLILPD 75 (132)
Q Consensus 4 ~~Pl~lL~~~~g~~V-~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~------dg~~~~l~~vfIRGs~Ir~I~lPd 75 (132)
..|+-+..-+.|+.+ +++|+--+. -| .-+.|+.+.|+||.++.- ++....++.|.++=..|.+-+.|.
T Consensus 66 aSP~L~~a~~~G~~l~~v~i~~~r~-~G---~~~~y~~i~L~~v~Is~i~~~~~~~~~~~p~E~vsl~y~kI~w~y~~q 140 (163)
T 3eaa_A 66 ASVKLASAAVQGQNFPTLELEICTQ-AG---DKFAFCIYKFTHVAVSSYQCSGATGGSDRPQETIDFAYKEVTWEYVPQ 140 (163)
T ss_dssp SHHHHHHHHHHTCCEEEEEEEEECS-ST---TCCEEEEEEEEEEEEEEEEEECCCSSSSSCEEEEEEECSEEECCBCCB
T ss_pred chHHHHHHHhCCCccCeEEEEEEEC-CC---CeeEEEEEEEEeEEEEEEEeccccCCCCceEEEEEEEeeEeEEEEEEE
Confidence 346655455577755 466554332 23 256899999999999752 223456788888888888777653
No 71
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=34.85 E-value=41 Score=21.64 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=26.0
Q ss_pred hCCCEEEEEEcCCCEEEEEEEeeCCccceEEeeE
Q psy17024 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv 46 (132)
..+.+|.|...+--.++|.+..+|+++=+.+.++
T Consensus 47 ~~~e~v~i~vng~~~~~ge~g~~~~~~avrI~~~ 80 (84)
T 1o9y_A 47 ISPGHATLCHGEQVVAEGELVDVEGRLGLQITRL 80 (84)
T ss_dssp SCTTEEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 3456777777777788999999998888877654
No 72
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=32.46 E-value=48 Score=23.29 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=21.8
Q ss_pred hCCCEEEEEEcCCCEEEEEEEeeC
Q psy17024 13 AEGHIITCETTNGDLFRGKLVEAE 36 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~~D 36 (132)
.+|++|..+-+|+..|+|+++.+.
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEE
T ss_pred ccCCEEEEECCCCCEEeEEEEEEe
Confidence 479999999999999999999865
No 73
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=30.47 E-value=46 Score=22.12 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=26.1
Q ss_pred CCCEEEEEEcCCCEEEEEEEeeCCccceEEeeE
Q psy17024 14 EGHIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (132)
Q Consensus 14 ~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv 46 (132)
.+.+|.|...+-..++|.+..+|+++=+.+.++
T Consensus 52 ~~~~v~i~vng~~i~~Ge~g~~~~~~aVrI~~i 84 (96)
T 3uep_A 52 VDGEVRLLANGRLLGHGRLVEIQGRLGVRIERL 84 (96)
T ss_dssp SSCEEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCcEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 356666666666788999999999998888774
No 74
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=28.14 E-value=76 Score=23.79 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=24.5
Q ss_pred hCCCEEEEEEcCCCEEEEEEEeeCCccceEEee
Q psy17024 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMAD 45 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~~D~~MNi~L~d 45 (132)
..|+.|+| ++ ++|+...+|+.-.+.|++
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 47999999 44 999999999999999864
No 75
>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima}
Probab=27.24 E-value=71 Score=24.91 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=25.7
Q ss_pred cceEEeeEEEEecCCceeecceEEEecCeEEEEe
Q psy17024 39 MNCAMADVTVTFRDGKVKPMANIYIRGSKIRFLI 72 (132)
Q Consensus 39 MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~ 72 (132)
|.+.++|+++.+.++.... ..|+|++..|..|-
T Consensus 5 ~~~~i~~~~i~~~~~~~~~-~~v~i~~g~I~~i~ 37 (396)
T 3ooq_A 5 VKILFKNATVFPITSRPFK-GDVLVSNGKVEKVG 37 (396)
T ss_dssp -CEEEEEEEECCSSSCCEE-EEEEEETTEEEEEE
T ss_pred ceEEEECcEEEeCCCCeEE-eEEEEECCEEEEec
Confidence 5678999998876665444 78999999999886
No 76
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=27.02 E-value=75 Score=24.72 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=21.3
Q ss_pred eeCCccceEEeeEEEEecCCc-eeecceEEEecCeEEEEe
Q psy17024 34 EAEDNMNCAMADVTVTFRDGK-VKPMANIYIRGSKIRFLI 72 (132)
Q Consensus 34 ~~D~~MNi~L~dv~~t~~dg~-~~~l~~vfIRGs~Ir~I~ 72 (132)
++|..|.+.++|+++.+.++. ...-..|.|.+..|..|-
T Consensus 2 ~~~~~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg 41 (418)
T 2qs8_A 2 SLDVDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIK 41 (418)
T ss_dssp -----CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEE
T ss_pred CCCCCccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEe
Confidence 456667777777777654442 222246777777777763
No 77
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.94 E-value=79 Score=25.20 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=29.9
Q ss_pred EEEEEeeCCccceEEeeEEEEecCCc--eeecceEEEecC-eEEEEecCcc
Q psy17024 29 RGKLVEAEDNMNCAMADVTVTFRDGK--VKPMANIYIRGS-KIRFLILPDM 76 (132)
Q Consensus 29 ~G~L~~~D~~MNi~L~dv~~t~~dg~--~~~l~~vfIRGs-~Ir~I~lPd~ 76 (132)
.|++.+++.+.- .-+-|.+.+.+|. ...++.|||=|. +=-+|.||..
T Consensus 192 iG~I~~ie~~~g-s~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~~ 241 (265)
T 3iz6_D 192 VGVIKNREKHKG-SFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKG 241 (265)
T ss_dssp EEEEEEEECCSS-SCCEEEECCCSSCCEEEEGGGEEEEECSSCCCCCCCCC
T ss_pred EEEEEEEEEecC-CCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCCC
Confidence 399999987765 2333444444553 467888999886 2346677743
No 78
>1y12_A Hypothetical protein PA0085; hemolysin-corregulation, structural PSI, protein structure initiative, midwest center for struc genomics; 1.95A {Pseudomonas aeruginosa PAO1} SCOP: b.157.1.1
Probab=25.42 E-value=46 Score=23.96 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=43.6
Q ss_pred ccHHHHHHhhCCCEE-EEEEcCCCEEEEEEEeeCCccceEEeeEEEEec--C---CceeecceEEEecCeEEEEecCc
Q psy17024 4 GIPIKLLHEAEGHII-TCETTNGDLFRGKLVEAEDNMNCAMADVTVTFR--D---GKVKPMANIYIRGSKIRFLILPD 75 (132)
Q Consensus 4 ~~Pl~lL~~~~g~~V-~VELKnG~~y~G~L~~~D~~MNi~L~dv~~t~~--d---g~~~~l~~vfIRGs~Ir~I~lPd 75 (132)
..|+-+-.-+.|+.+ .++|+--+.- |. +-+.|+.+.|+||.++.- . +....++.|.++=..|.+-+.+.
T Consensus 68 aSP~L~~a~~~g~~l~~~~i~~~r~~-G~--~~~~y~~i~L~~a~Is~i~~~~~~~~~~~~E~vsl~y~~I~~~y~~~ 142 (165)
T 1y12_A 68 STPNLMMACSSGKHYPQAKLTIRKAG-GE--NQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQ 142 (165)
T ss_dssp THHHHHHHHHHTCCEEEEEEEEECTT-CT--TSCCCEEEEEEEEEEEEEECCCCSSCSSCEEEEEEEEEEEEEEECCB
T ss_pred cCHHHHHHHhCCCccceEEEEEEEcC-CC--cceEEEEEEEEeEEEEEEEecccCCCCCcEEEEEEEeeEEEEEEEee
Confidence 345555555567766 5665432210 22 136899999999999852 1 23456778888888888877654
No 79
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=24.10 E-value=1e+02 Score=25.29 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=27.0
Q ss_pred CEEEEEEcCCCEEEEEEEeeCCccceEEeeE
Q psy17024 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (132)
Q Consensus 16 ~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv 46 (132)
..|+|.+.+++.|..+++..|...++-|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999999888777544
No 80
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=23.70 E-value=71 Score=21.45 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=26.2
Q ss_pred EcCCCEEEEEEEeeCCccceEEeeEEEEecCC
Q psy17024 22 TTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53 (132)
Q Consensus 22 LKnG~~y~G~L~~~D~~MNi~L~dv~~t~~dg 53 (132)
||-|.+|.|+|.++-.+-+=.......|...+
T Consensus 45 LkPGvtYegQLisV~r~g~~EvtrfdfTT~~~ 76 (89)
T 1q38_A 45 LKPGVVYEGQLISIQQYGHQEVTRFDFTTTST 76 (89)
T ss_dssp CCTTCCEEEEEEEECTTSCCCEEEEEECSSSS
T ss_pred cCCCcEEEEEEEeeeecccCCceEEEEEeccC
Confidence 78899999999999999987777776665444
No 81
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=23.52 E-value=57 Score=26.28 Aligned_cols=25 Identities=8% Similarity=-0.112 Sum_probs=20.2
Q ss_pred HhhCCCEEEEEEcCCCEEEEEEEee
Q psy17024 11 HEAEGHIITCETTNGDLFRGKLVEA 35 (132)
Q Consensus 11 ~~~~g~~V~VELKnG~~y~G~L~~~ 35 (132)
+.+.+++|+|.+++|..|.|++-..
T Consensus 95 ~~~~~~~v~i~t~~g~~~~Gvig~~ 119 (355)
T 3kl9_A 95 MVVSSQRFKLLTRDGHEIPVISGSV 119 (355)
T ss_dssp TTCSSCEEEEECTTSCEEEEEEC--
T ss_pred cccCCCEEEEEcCCCCEEEEEEeCc
Confidence 3468999999999999999998643
No 82
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=22.51 E-value=68 Score=21.08 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCEEEEEEEeeCCccceEEeeE
Q psy17024 15 GHIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (132)
Q Consensus 15 g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv 46 (132)
+.+|.|...+-..++|.+..+|+++=+.+.++
T Consensus 53 ~~~v~v~v~g~~i~~G~~g~~~~~~aVrI~~~ 84 (96)
T 1o6a_A 53 GEPVDILVNGKLIARGEVVVIDENFGVRITEI 84 (96)
T ss_dssp TCCEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 45555655555678888888888877777664
No 83
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=22.24 E-value=1.5e+02 Score=19.90 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=25.0
Q ss_pred HHHHhhCCCEEEEEEcCCC----EEEEEEEeeCC
Q psy17024 8 KLLHEAEGHIITCETTNGD----LFRGKLVEAED 37 (132)
Q Consensus 8 ~lL~~~~g~~V~VELKnG~----~y~G~L~~~D~ 37 (132)
+-|...+|+.|+|....|. +-.|+|.++=.
T Consensus 18 ~~l~~~vG~~V~l~An~GRkK~~er~GvL~etYP 51 (90)
T 3fb9_A 18 EEIKAHEGQVVEMTLENGRKRQKNRLGKLIEVYP 51 (90)
T ss_dssp HHHHHTTTSEEEEEECCSSSCCSCEEEEEEEECS
T ss_pred HHHHHcCCCEEEEEecCCcccEEEEEEEEEEecC
Confidence 4577889999999999985 78899988654
No 84
>3fso_A Integrin beta-4, GP150; immunoglobulin fold, cell adhesion, alternative splicing, disease mutation, epidermolysis bullosa, glycoprotein, membrane; 1.41A {Homo sapiens} SCOP: b.1.27.0 PDB: 3fq4_A 3h6a_A
Probab=21.10 E-value=49 Score=22.60 Aligned_cols=32 Identities=3% Similarity=-0.017 Sum_probs=16.4
Q ss_pred CEEEEEEcCCCEEEEEEEe-eCCccceEEeeEE
Q psy17024 16 HIITCETTNGDLFRGKLVE-AEDNMNCAMADVT 47 (132)
Q Consensus 16 ~~V~VELKnG~~y~G~L~~-~D~~MNi~L~dv~ 47 (132)
+.|+|.+.++..+.+.+.. -|+++.+.|++.+
T Consensus 71 k~i~V~I~dD~~~E~~~e~~~~E~F~v~L~~p~ 103 (123)
T 3fso_A 71 KELQVKLLELQEVDSLLRGRQVRRFHVQLSNPK 103 (123)
T ss_dssp EEEEEEBCCC---------CCEEEEEEEEEEEE
T ss_pred EEEEEEEECCCCchhccccCCCeEEEEEEeCCC
Confidence 5677777777777663333 2677778887753
No 85
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=20.86 E-value=1.2e+02 Score=22.33 Aligned_cols=32 Identities=19% Similarity=0.466 Sum_probs=26.6
Q ss_pred CCEEEEEEcCCCEEEEEEEeeCCccceEEeeE
Q psy17024 15 GHIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (132)
Q Consensus 15 g~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv 46 (132)
...+.|.+.+++.|..+++.+|...++-|-.+
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 35789999999999999999998877766443
No 86
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=20.83 E-value=1.4e+02 Score=24.62 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=27.0
Q ss_pred CEEEEEEcCCCEEEEEEEeeCCccceEEeeE
Q psy17024 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (132)
Q Consensus 16 ~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv 46 (132)
..|.|.+.++++|..+++..|...++-|-.+
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4689999999999999999999988877544
No 87
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=20.63 E-value=1.1e+02 Score=24.31 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=26.3
Q ss_pred CEEEEEEcCCCEEEEEEEeeCCccceEEeeE
Q psy17024 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (132)
Q Consensus 16 ~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv 46 (132)
..+.|.+.+++.|..+++.+|...++-|-.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 3688999999999999999999888776443
No 88
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=20.30 E-value=1e+02 Score=23.27 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=25.4
Q ss_pred CEEEEEEcCCCEEEEEEEeeCCccceEEeeE
Q psy17024 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (132)
Q Consensus 16 ~~V~VELKnG~~y~G~L~~~D~~MNi~L~dv 46 (132)
..++|.+.+++.|..+++..|....+-|-.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4688999999999999999998887766443
No 89
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=20.21 E-value=76 Score=24.01 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=18.6
Q ss_pred hCCCEEEEEEcCCCEEEEEEEe
Q psy17024 13 AEGHIITCETTNGDLFRGKLVE 34 (132)
Q Consensus 13 ~~g~~V~VELKnG~~y~G~L~~ 34 (132)
.+|..|.|.+.+|.++.|++.+
T Consensus 169 ~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 169 AVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp CTTSEEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEEEEec
Confidence 5788899998889999998865
Done!