Query psy17025
Match_columns 2010
No_of_seqs 326 out of 587
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 19:53:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1997|consensus 100.0 2E-210 4E-215 1995.7 56.6 1449 509-2006 2-1506(1518)
2 KOG1998|consensus 100.0 4.5E-84 9.7E-89 845.4 57.1 1137 520-1997 242-1453(1548)
3 cd08696 C2_Dock-C C2 domains f 100.0 1.1E-55 2.3E-60 482.7 20.4 178 540-718 1-179 (179)
4 cd08697 C2_Dock-D C2 domains f 100.0 4.2E-53 9.1E-58 463.9 19.8 178 540-718 1-185 (185)
5 KOG1997|consensus 100.0 3.8E-47 8.3E-52 491.0 -23.2 1207 172-1473 3-1260(1518)
6 PF14429 DOCK-C2: C2 domain in 100.0 3.5E-42 7.5E-47 386.0 11.3 177 536-718 1-184 (184)
7 PF06920 Ded_cyto: Dedicator o 100.0 2.3E-39 5.1E-44 360.4 16.6 178 1814-1992 1-178 (178)
8 cd08694 C2_Dock-A C2 domains f 100.0 8.4E-39 1.8E-43 350.1 18.4 175 540-718 1-196 (196)
9 cd08679 C2_DOCK180_related C2 100.0 9.2E-39 2E-43 356.0 18.8 170 540-718 1-178 (178)
10 cd08695 C2_Dock-B C2 domains f 100.0 4.1E-38 9E-43 345.3 18.2 173 540-718 1-189 (189)
11 PF11878 DUF3398: Domain of un 99.9 9.6E-26 2.1E-30 224.7 5.2 94 36-129 1-98 (98)
12 PF00792 PI3K_C2: Phosphoinosi 93.6 0.15 3.2E-06 55.7 6.7 78 596-675 23-103 (142)
13 PF14938 SNAP: Soluble NSF att 91.2 1.9 4.1E-05 52.5 12.8 133 1551-1711 30-165 (282)
14 KOG1586|consensus 87.6 4.7 0.0001 47.0 11.3 112 1552-1711 30-144 (288)
15 cd08398 C2_PI3K_class_I_alpha 86.5 2.6 5.7E-05 47.0 8.5 68 604-673 53-122 (158)
16 PF14938 SNAP: Soluble NSF att 83.7 21 0.00046 43.5 15.4 54 1549-1602 68-122 (282)
17 cd08693 C2_PI3K_class_I_beta_d 82.5 4.1 9E-05 46.1 8.0 71 603-673 54-136 (173)
18 cd08397 C2_PI3K_class_III C2 d 81.5 4.7 0.0001 45.0 7.9 68 604-679 58-129 (159)
19 cd04016 C2_Tollip C2 domain pr 80.9 5.8 0.00013 42.3 8.0 64 594-666 34-101 (121)
20 cd08380 C2_PI3K_like C2 domain 80.8 3.2 7E-05 46.0 6.3 69 603-675 55-125 (156)
21 cd08408 C2B_Synaptotagmin-14_1 79.0 10 0.00022 41.3 9.3 61 593-659 53-113 (138)
22 cd04012 C2A_PI3K_class_II C2 d 78.9 7.1 0.00015 44.1 8.4 76 604-679 61-141 (171)
23 cd08402 C2B_Synaptotagmin-1 C2 76.0 10 0.00022 40.9 8.2 57 595-657 54-110 (136)
24 cd08384 C2B_Rabphilin_Doc2 C2 75.7 17 0.00038 38.8 9.9 59 594-658 51-109 (133)
25 cd08399 C2_PI3K_class_I_gamma 75.5 25 0.00054 40.1 11.4 69 603-673 56-138 (178)
26 cd08680 C2_Kibra C2 domain fou 74.6 7.7 0.00017 41.5 6.7 59 593-657 52-110 (124)
27 PF11698 V-ATPase_H_C: V-ATPas 73.2 12 0.00025 39.9 7.4 73 1394-1471 45-119 (119)
28 cd04040 C2D_Tricalbin-like C2 72.1 10 0.00023 39.3 7.0 54 595-656 34-87 (115)
29 cd08393 C2A_SLP-1_2 C2 domain 70.9 19 0.00041 38.3 8.8 58 594-657 54-111 (125)
30 cd08686 C2_ABR C2 domain in th 70.9 12 0.00026 39.8 7.0 60 592-655 30-90 (118)
31 smart00239 C2 Protein kinase C 70.8 35 0.00076 33.2 10.2 57 593-657 35-91 (101)
32 cd08385 C2A_Synaptotagmin-1-5- 70.6 14 0.0003 39.0 7.6 58 594-657 52-109 (124)
33 cd00030 C2 C2 domain. The C2 d 69.9 28 0.0006 33.6 9.1 57 593-657 32-88 (102)
34 cd08410 C2B_Synaptotagmin-17 C 69.8 5.7 0.00012 42.9 4.5 58 595-658 53-110 (135)
35 cd08395 C2C_Munc13 C2 domain t 69.8 17 0.00037 38.7 7.9 58 594-657 39-97 (120)
36 cd08690 C2_Freud-1 C2 domain f 68.5 13 0.00028 41.5 7.0 60 593-657 41-106 (155)
37 cd04029 C2A_SLP-4_5 C2 domain 68.4 9.6 0.00021 40.7 5.8 58 594-657 54-111 (125)
38 cd08682 C2_Rab11-FIP_classI C2 68.3 13 0.00028 39.5 6.7 58 594-657 32-92 (126)
39 cd08689 C2_fungal_Pkc1p C2 dom 68.0 7.3 0.00016 40.5 4.5 46 601-657 40-85 (109)
40 cd08388 C2A_Synaptotagmin-4-11 67.3 27 0.00058 37.5 8.9 58 595-658 54-112 (128)
41 PF08767 CRM1_C: CRM1 C termin 66.7 1.6E+02 0.0036 36.7 16.9 104 1368-1471 91-198 (319)
42 cd08405 C2B_Synaptotagmin-7 C2 65.9 7.7 0.00017 41.8 4.5 59 594-658 53-111 (136)
43 cd00276 C2B_Synaptotagmin C2 d 65.8 7.8 0.00017 41.2 4.6 58 594-657 52-109 (134)
44 cd08403 C2B_Synaptotagmin-3-5- 65.7 8.6 0.00019 41.3 4.9 57 595-657 53-109 (134)
45 cd04044 C2A_Tricalbin-like C2 65.2 16 0.00034 38.3 6.7 56 593-657 37-92 (124)
46 cd08382 C2_Smurf-like C2 domai 64.8 15 0.00032 39.0 6.3 56 594-657 34-89 (123)
47 cd04013 C2_SynGAP_like C2 doma 64.3 20 0.00044 39.5 7.4 61 592-657 38-98 (146)
48 cd04009 C2B_Munc13-like C2 dom 64.2 11 0.00024 40.5 5.3 59 593-657 55-115 (133)
49 cd04032 C2_Perforin C2 domain 64.0 13 0.00029 39.9 5.8 56 594-656 60-115 (127)
50 cd08404 C2B_Synaptotagmin-4 C2 62.5 9.4 0.0002 41.2 4.4 58 594-657 53-110 (136)
51 cd08390 C2A_Synaptotagmin-15-1 62.0 13 0.00028 39.1 5.2 57 595-657 52-108 (123)
52 cd08373 C2A_Ferlin C2 domain f 61.5 19 0.00041 38.3 6.4 56 595-656 28-83 (127)
53 cd04051 C2_SRC2_like C2 domain 61.3 22 0.00048 37.5 6.9 57 595-657 35-94 (125)
54 cd04038 C2_ArfGAP C2 domain pr 59.2 23 0.00049 39.0 6.7 55 593-656 33-87 (145)
55 cd08392 C2A_SLP-3 C2 domain fi 58.4 15 0.00033 39.4 5.1 57 594-656 54-110 (128)
56 cd04042 C2A_MCTP_PRT C2 domain 56.9 24 0.00053 37.1 6.3 55 594-657 34-88 (121)
57 cd04048 C2A_Copine C2 domain f 56.7 21 0.00046 37.5 5.8 62 592-657 38-99 (120)
58 cd04041 C2A_fungal C2 domain f 56.3 25 0.00054 36.5 6.2 56 595-656 39-95 (111)
59 cd04043 C2_Munc13_fungal C2 do 54.9 27 0.00059 36.9 6.3 55 594-656 37-91 (126)
60 cd08678 C2_C21orf25-like C2 do 54.6 34 0.00074 36.3 7.0 55 594-657 32-86 (126)
61 cd08409 C2B_Synaptotagmin-15 C 54.2 68 0.0015 34.8 9.3 57 593-655 51-107 (137)
62 cd04039 C2_PSD C2 domain prese 53.5 36 0.00078 35.4 6.8 57 594-657 38-94 (108)
63 cd04030 C2C_KIAA1228 C2 domain 53.1 17 0.00038 38.3 4.5 61 593-657 53-113 (127)
64 cd08688 C2_KIAA0528-like C2 do 52.5 29 0.00064 35.9 5.9 59 593-657 32-91 (110)
65 cd04033 C2_NEDD4_NEDD4L C2 dom 52.5 33 0.00071 36.6 6.5 57 592-657 38-94 (133)
66 KOG2758|consensus 52.4 79 0.0017 38.8 9.9 42 1562-1604 118-159 (432)
67 cd04036 C2_cPLA2 C2 domain pre 50.9 31 0.00067 36.2 5.9 54 594-656 36-89 (119)
68 cd08376 C2B_MCTP_PRT C2 domain 50.9 43 0.00093 34.8 6.9 55 594-656 33-87 (116)
69 cd08677 C2A_Synaptotagmin-13 C 50.9 27 0.00058 37.2 5.3 59 593-657 47-105 (118)
70 cd08381 C2B_PI3K_class_II C2 d 48.4 23 0.0005 37.6 4.4 59 593-657 49-108 (122)
71 cd08375 C2_Intersectin C2 doma 48.2 37 0.0008 36.9 6.1 56 594-657 48-103 (136)
72 cd04035 C2A_Rabphilin_Doc2 C2 48.0 36 0.00078 35.9 5.9 56 594-656 53-109 (123)
73 cd04021 C2_E3_ubiquitin_ligase 47.7 45 0.00098 35.5 6.6 53 594-656 35-87 (125)
74 KOG1998|consensus 47.2 0.44 9.4E-06 67.4 -10.9 231 1682-1929 1016-1261(1548)
75 KOG2003|consensus 47.1 1.2E+02 0.0026 38.5 10.6 68 1526-1598 541-616 (840)
76 cd08377 C2C_MCTP_PRT C2 domain 46.9 40 0.00088 35.1 6.0 54 595-657 35-88 (119)
77 cd04037 C2E_Ferlin C2 domain f 45.3 1.1E+02 0.0024 32.5 9.1 55 595-657 36-90 (124)
78 cd04022 C2A_MCTP_PRT_plant C2 44.7 83 0.0018 33.4 8.1 58 594-656 33-91 (127)
79 cd00275 C2_PLC_like C2 domain 43.9 45 0.00098 35.1 5.9 66 594-671 43-109 (128)
80 cd08387 C2A_Synaptotagmin-8 C2 43.8 35 0.00076 36.0 5.0 57 595-657 53-109 (124)
81 cd04010 C2B_RasA3 C2 domain se 43.7 36 0.00078 37.7 5.2 57 595-657 37-106 (148)
82 cd08406 C2B_Synaptotagmin-12 C 43.4 29 0.00062 37.8 4.3 59 595-659 54-112 (136)
83 cd08401 C2A_RasA2_RasA3 C2 dom 42.5 69 0.0015 34.0 7.0 53 595-656 36-88 (121)
84 PF00168 C2: C2 domain; Inter 42.4 23 0.0005 33.8 3.1 51 593-651 34-84 (85)
85 cd08521 C2A_SLP C2 domain firs 41.9 34 0.00073 35.9 4.5 58 594-657 53-110 (123)
86 PF13424 TPR_12: Tetratricopep 41.9 2.4E+02 0.0053 26.8 10.1 73 1575-1693 6-78 (78)
87 cd04025 C2B_RasA1_RasA4 C2 dom 41.7 71 0.0015 33.6 6.9 55 595-657 34-88 (123)
88 cd08386 C2A_Synaptotagmin-7 C2 40.7 47 0.001 35.0 5.4 57 595-657 53-110 (125)
89 cd04018 C2C_Ferlin C2 domain t 40.2 69 0.0015 35.6 6.7 55 595-656 48-102 (151)
90 cd04014 C2_PKC_epsilon C2 doma 39.9 62 0.0014 34.6 6.2 52 595-656 49-100 (132)
91 PF13424 TPR_12: Tetratricopep 39.0 1.5E+02 0.0033 28.2 8.2 57 1660-1716 4-61 (78)
92 cd08389 C2A_Synaptotagmin-14_1 38.6 41 0.00089 35.8 4.6 57 594-657 52-109 (124)
93 cd04015 C2_plant_PLD C2 domain 38.5 98 0.0021 34.6 7.7 53 595-657 72-124 (158)
94 cd04046 C2_Calpain C2 domain p 38.5 2.3E+02 0.0051 30.0 10.3 54 594-657 36-89 (126)
95 cd04052 C2B_Tricalbin-like C2 38.0 75 0.0016 33.0 6.3 54 594-656 26-79 (111)
96 cd08681 C2_fungal_Inn1p-like C 37.9 58 0.0013 33.9 5.5 54 595-657 35-89 (118)
97 cd08685 C2_RGS-like C2 domain 37.6 44 0.00096 35.4 4.6 59 593-657 48-106 (119)
98 cd04047 C2B_Copine C2 domain s 37.1 1E+02 0.0022 31.7 7.1 58 593-657 38-97 (110)
99 PF14186 Aida_C2: Cytoskeletal 36.8 2.8E+02 0.006 30.9 10.4 112 541-673 12-124 (147)
100 PF01602 Adaptin_N: Adaptin N 36.8 5.4E+02 0.012 34.0 15.6 261 1363-1692 242-503 (526)
101 cd04028 C2B_RIM1alpha C2 domai 36.3 67 0.0014 35.5 5.8 57 593-657 67-123 (146)
102 cd08407 C2B_Synaptotagmin-13 C 35.6 50 0.0011 36.1 4.7 60 593-658 54-113 (138)
103 cd04031 C2A_RIM1alpha C2 domai 33.7 53 0.0011 34.5 4.4 58 594-657 54-112 (125)
104 KOG1586|consensus 33.5 2.4E+02 0.0052 33.7 9.7 98 1570-1715 30-127 (288)
105 PF14911 MMS22L_C: S-phase gen 33.3 5.7E+02 0.012 32.8 13.8 101 1439-1552 257-359 (373)
106 cd04027 C2B_Munc13 C2 domain s 32.8 2.3E+02 0.0049 30.2 9.1 61 594-657 34-99 (127)
107 cd04054 C2A_Rasal1_RasA4 C2 do 32.5 1.1E+02 0.0024 32.3 6.6 52 595-655 35-86 (121)
108 cd08394 C2A_Munc13 C2 domain f 32.2 1.1E+02 0.0025 33.0 6.5 53 594-657 32-84 (127)
109 cd04026 C2_PKC_alpha_gamma C2 31.5 94 0.002 33.1 6.0 58 593-657 50-107 (131)
110 PF13176 TPR_7: Tetratricopept 31.5 85 0.0018 25.8 4.3 27 1577-1603 2-28 (36)
111 cd08692 C2B_Tac2-N C2 domain s 31.2 1.4E+02 0.003 32.8 7.0 57 593-656 51-108 (135)
112 KOG1030|consensus 29.9 1E+02 0.0022 34.8 5.8 55 593-656 38-92 (168)
113 cd08391 C2A_C2C_Synaptotagmin_ 29.8 1.2E+02 0.0026 31.6 6.3 54 594-656 40-93 (121)
114 PLN03008 Phospholipase D delta 27.9 1.5E+02 0.0033 41.3 8.0 53 594-656 90-142 (868)
115 cd04020 C2B_SLP_1-2-3-4 C2 dom 27.4 1.7E+02 0.0036 32.9 7.2 59 593-657 64-123 (162)
116 cd08676 C2A_Munc13-like C2 dom 25.6 1.4E+02 0.0031 33.3 6.1 52 594-657 90-141 (153)
117 cd04049 C2_putative_Elicitor-r 25.1 2E+02 0.0042 30.3 6.9 56 595-656 35-92 (124)
118 KOG1585|consensus 24.9 8.6E+02 0.019 29.5 12.2 160 1548-1716 23-185 (308)
119 cd04045 C2C_Tricalbin-like C2 24.5 1.6E+02 0.0034 31.2 6.0 55 594-657 35-89 (120)
120 cd08378 C2B_MCTP_PRT_plant C2 24.1 1.3E+02 0.0028 31.9 5.3 54 595-657 30-83 (121)
121 PF12830 Nipped-B_C: Sister ch 24.1 1.1E+03 0.023 27.1 13.1 154 1436-1608 6-165 (187)
122 PF07719 TPR_2: Tetratricopept 23.5 1.4E+02 0.003 23.5 4.2 28 1575-1602 2-29 (34)
123 cd04011 C2B_Ferlin C2 domain s 22.4 1.3E+02 0.0029 31.0 5.0 57 594-656 33-91 (111)
124 KOG1840|consensus 22.3 2E+03 0.043 29.2 16.6 80 1569-1693 278-357 (508)
125 cd08383 C2A_RasGAP C2 domain ( 22.2 2.3E+02 0.005 29.2 6.7 37 595-632 32-68 (117)
126 PF02985 HEAT: HEAT repeat; I 22.2 1.4E+02 0.0031 23.8 3.9 27 1441-1467 3-29 (31)
127 cd04017 C2D_Ferlin C2 domain f 22.1 4.4E+02 0.0094 28.3 9.0 55 593-653 33-94 (135)
128 cd04024 C2A_Synaptotagmin-like 21.7 1.9E+02 0.0042 30.3 6.1 55 594-656 36-90 (128)
129 cd02681 MIT_calpain7_1 MIT: do 21.0 5.3E+02 0.011 25.6 8.2 56 1660-1716 6-66 (76)
130 cd04050 C2B_Synaptotagmin-like 20.9 1.8E+02 0.004 29.7 5.6 53 593-656 32-84 (105)
131 cd08379 C2D_MCTP_PRT_plant C2 20.7 3.5E+02 0.0075 29.2 7.7 71 594-667 36-108 (126)
132 cd08691 C2_NEDL1-like C2 domai 20.4 2.6E+02 0.0057 30.5 6.8 57 594-657 46-103 (137)
133 cd08675 C2B_RasGAP C2 domain s 20.2 2.1E+02 0.0047 31.0 6.1 58 594-657 35-105 (137)
No 1
>KOG1997|consensus
Probab=100.00 E-value=2e-210 Score=1995.65 Aligned_cols=1449 Identities=37% Similarity=0.495 Sum_probs=1302.1
Q ss_pred ccccCCCCCCCCCceEeeccCCCcccCCcccccceEEEecceeeecCCCCCcceEEEEEEEEeCCCCCCccCceeCCCCC
Q psy17025 509 AEIVPRIGDKGRPIKEILEFPLRETNLPHYLYRNLLFVYPKEINFTGRTGSARNLTVKVQLMYGETPESALPAIFGKSSC 588 (2010)
Q Consensus 509 ~~v~P~~~~~~~~~~Ei~eFp~~~~~~P~~~y~N~LYVyP~~l~f~~~k~~aRNI~v~V~l~~~d~~~~~l~~Iygk~~~ 588 (2010)
.+++||++++.+|. ++|||..+++.|++.|||.||+||..++|....+.++||.++++.+..++.+..+++++|++.+
T Consensus 2 l~~rpf~~~~lrpn--iLef~~~E~~~~~~~yR~~Ld~q~~~lqf~~~~n~a~ni~~~~~~~~~e~~~~~~~v~~~~st~ 79 (1518)
T KOG1997|consen 2 LISRPFPGTRLRPN--ILEFPAREVIFPHTFYRNLLDVQPACLQFQILVNSAENILTRDQTMPVEDAGIRRPVIFGKSTL 79 (1518)
T ss_pred CCccCCCCCCCCCc--ccccCCccccccchhhhhHHhhhhHHHHHHHHhhhhhhhhhhhhhchhhhhccchhhhHHHhhh
Confidence 46799999999988 9999999999999999999999999999988778999999999888788888999999999999
Q ss_pred CCCceEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccCCeeecCcEEe
Q psy17025 589 PEFTTEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKDGQLQLNDFCL 668 (2010)
Q Consensus 589 ~~f~~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~g~l~~ge~~L 668 (2010)
++|....+|+|.||+++|+||++.++.+|.....+||++|+|||++|+...+. ..|++.|+.|+|++...++..|.+++
T Consensus 80 ~~~lq~~~t~v~~~d~S~~~~~s~l~~lda~sl~nlh~~fv~yl~~sq~~~~~-~~et~~~n~~~~~~i~~el~~q~~~~ 158 (1518)
T KOG1997|consen 80 REFLQEPPTTVNYHDKSIEFYESRLLSLDAKSLAKLHLLFVFYLTSSQQHPGA-IAETPKPNLWLLLLIRHELSLQSDNL 158 (1518)
T ss_pred HHHhccCCcccccccccHHHHhhhhhcCCchHHHHHHHHHHhhccccccchhh-hhhcccccccchhhHHHHhhhcccCC
Confidence 99999999999999999999999999999999999999999999999998876 78999999999999877777777889
Q ss_pred eEeecCCCCCCcccCCCCCCCCCceecCCcceEEEEEEEeecccCCchHHHHHHHhhhhhccCCccCCCC-----CCcch
Q psy17025 669 PVTLEAPPPNYSYITPDVLLPGLKWVDNHKSIFNVVLSAASSIHPQDTHIHEFLSICDKLETGGVVSNRL-----PEINF 743 (2010)
Q Consensus 669 pV~~~~~p~~Y~~l~~~~~~p~~kwvd~~K~~F~v~t~~vSTv~tqD~~L~~ff~~~~~l~~~~~~p~~l-----~~~~~ 743 (2010)
||+....|+.|+...+.+..+.+.|. |+.|.+....+|+|++||+++.+||..++.++ ++.+|.++ .+...
T Consensus 159 k~~lfn~k~~ys~mi~~~~~~~~~~~---r~~f~~~~~~l~sV~~~D~~~sk~f~~~~~~~-~~a~p~~ll~~~~se~~d 234 (1518)
T KOG1997|consen 159 KVKLFNCKDRYSKMIIPVYNSVGTWA---RGPFNPELIPLSSVHPQDPYLSKFFTALHSLE-QNAFPHRLLTNLLSELPD 234 (1518)
T ss_pred CccccCCChhhhhhccccccccccee---ccccccccccceecCcCCcccCcceeeeeecc-Cccchhhhhhhhhhhhcc
Confidence 99988889999776666778999998 99999999999999999999999999999999 65777665 33344
Q ss_pred HHHHHHHHHhcccCCcchhhhhhHHHHHHHHHHhcCccccCCcceehHHHHHHHHHHHHHHhcccccCcccccCCcchhh
Q psy17025 744 EAELRQKILNLVNCKLEPLIKFLTIILNKLIYLMTQPLCMNGQSLCISQTVFEVIGLIIKFVSAFSEDESDACGRHPLLT 823 (2010)
Q Consensus 744 e~~l~~~l~~L~~~~~~~lv~FLp~ILn~Lf~ll~~~~~i~g~~~~~~~~~f~~L~~iv~~~~~~~e~~~d~~~r~~lL~ 823 (2010)
++++..+......+-+++.++|+|..++++..+..+|..|+|++.+++.++|+....+++..|.+...+++.++.++...
T Consensus 235 ~~e~~lS~~~~~~g~pEr~~~f~~~~lfav~~l~~~pv~Ia~~e~~l~~n~t~~~e~lik~~h~sK~as~n~k~~~c~~s 314 (1518)
T KOG1997|consen 235 ANELRLSFARTREGIPERLLKFLHQDLFAVVHLHFRPVLIAGIEAVLQGNITESDEPLIKLSHNSKAASSNLKGSKCTES 314 (1518)
T ss_pred ccccccchhhhhccCchhhhhccchhhhhcccccccceEEEeeeeecccccccccchhhccCchhhhhhhhcccccccCC
Confidence 45566677777788899999999999999999999999999999999999999999999999998888899999999999
Q ss_pred hHhhhhccCCCCCch----hhh----------------hh-------hhhcccCCCCCCchh-hHHhhhhcccccccccc
Q psy17025 824 SYVTYQCCIPHPDLE----QKR----------------SN-------MQRQKSSSNPDLQLD-IEVQAYNARGLDRTCSM 875 (2010)
Q Consensus 824 sYi~y~F~~~~~~~~----~~~----------------~~-------L~k~~s~s~~~~~~~-~~~~~~~~~e~~~~~~~ 875 (2010)
+|.+|.|..+..... ... .+ +.++.+.|+|+..+. ++++. ++.++.-.
T Consensus 315 ~ig~Y~~plaw~ar~l~~D~ap~~~~~a~~~hLls~~ssn~~s~~is~~~~d~~SPp~~~~~~~~sde----~ls~V~~~ 390 (1518)
T KOG1997|consen 315 PIGHYRMPLAWAARPLPVDGAPPALLDARNMHLLAFLSSNFASLCISLSNKDEQSPPKGYGVGIASDD----LLSMVEFF 390 (1518)
T ss_pred cccceecccccccCCCCcCCCCccccccchhhhhhhcchhHHHHHHHHHhccccCCcccccCCccchh----hhhhhhhH
Confidence 999999987643321 000 01 123455678877776 33332 22222222
Q ss_pred cCCCC-------CC--ccCcCccccccchhHHHHHhhHhhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcCC
Q psy17025 876 KAGQC-------AD--NFASGSKLNLCKILHEEIGLQWVVSSSTARENAMSHAWFFFDLMAKSMVEHLSITETMDSPRKM 946 (2010)
Q Consensus 876 k~~~~-------~~--~~~~~~~~~~~k~~heeLa~~~~~~~~~~~~~~l~~sWFfFelIvKSMa~~l~~~~~~~~pR~~ 946 (2010)
+-+.. .. .+..|. +..++. ||+++.||+......+....+++|+||+...+||++++......+.|++.
T Consensus 391 kll~~t~~~ms~~l~~~sn~Pt-e~~~~~-~~~~~~qn~~~~~~~~~~~~k~a~s~~~~~~~s~~~~iy~~~~r~~p~~~ 468 (1518)
T KOG1997|consen 391 LLLIVTPFALSRALYYDSNAPT-EEDKKI-VERCIMQNVDCLLTERHERCKKALSFAKRQNSSLAFTIYHLLCRIEPCKL 468 (1518)
T ss_pred HHHhhhhHHHHHHHhccCCCCc-chHHHH-HHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhc
Confidence 21111 00 011221 122444 99999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhhccChHHHHHHHhhHHHHHhhhhcccchHHHHHHHHHHHHHHhhhhcCCCChHHHH
Q psy17025 947 RFSDQYMEDIATLVTSFTSDIIAYCHKDYKLTRSMNTSLAFFLFDLFSFADRSFVFLLIKTYYKHVTAKISSLPDSIALS 1026 (2010)
Q Consensus 947 RF~~~F~~~i~~Lv~~l~~~i~~r~~~~~~~a~~lN~slA~Fl~dlls~mDRGfVf~LI~~Y~~~~~~~~~s~~d~~~L~ 1026 (2010)
||+.+|.+++..++...+.++.-+..+..+.+...|.+.|+|++|.++.++++|||.+++.+...+..+....++..++.
T Consensus 469 r~~~~~~~~~~~~v~~~~~~l~~~~i~l~~~~~~~~~~~a~~~~~~~s~~~~~~v~~~~r~~~~~l~~~~~~~~~~~s~~ 548 (1518)
T KOG1997|consen 469 RELVSLLDDKTSEVLESTLKLGFKQIILDHDLEVEMPRRAFSLRNYLSSILIQFVFLSLRHDESPLRAKGARILVILSLL 548 (1518)
T ss_pred ccchhhhhhhhHHHHHHHhhhcccccccHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 99999999999999988877766666677888999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHHhcCCcccccCCCCccccccCCCCCCCCCCCCCCCcccccccccccCCCCcccccccccccccccHHHHHH
Q psy17025 1027 NLKLEFLRVVCSHEHFVPLNLPFGTVFTANSSSTSPSPSTNSSTSQSSYMSSLISKDKSPFAELSLEFKQQHYLVGLILS 1106 (2010)
Q Consensus 1027 ~~Kl~FLriicshEhfv~LNLP~~~~~~~~~~p~~~~ps~~s~~s~~~~~~~~~~~~~~~~~~Ls~~f~~~HfL~glLl~ 1106 (2010)
+++++|++|+|.|||+++||+|+. ....++.+++++.+ +++... +..++.+...++.+|..+..+|+++|..+.
T Consensus 549 ~~~~~~~~~l~~~~~~~~l~lp~~---~~~~~~~~~~~s~~-~~~~~~--~~~~~~kiv~~l~~ts~v~~q~~~~g~~~l 622 (1518)
T KOG1997|consen 549 DEFFLRLEILCGHEHIVQLNLPFV---NQILKEMPVSNSLG-ATESRE--VLTGVLKIVRNLDDTSLVKAQQQSIGSTFL 622 (1518)
T ss_pred HHHHHHHHHHhhhcchhhcccccc---cccchhcccCcccc-ccceec--cccchHHHHHHHHhhhHHHHHHHHhhhHHH
Confidence 999999999999999999999984 23345566677666 222211 245677788899999999999999999999
Q ss_pred HHHHHHh---ccChhHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC---ccccCCC
Q psy17025 1107 EFAAMIE---VQNHNFHNRIVTLITDLMASHDCDARFVEPEAKARVAALYLPYIALTMDMLPNLHSGNDV---SRIINPT 1180 (2010)
Q Consensus 1107 el~~~L~---~~~~~lr~~Ai~~L~~LL~khd~D~Ry~~~~~~arIA~LYlPll~ivld~~~~l~~~~~~---~~~~~~~ 1180 (2010)
|+..++. +++..++.++.+..++++++|++|+||.+..+|++||.||.|.+.++.|..+.|..+... .+..++.
T Consensus 623 ~~~~~~~~~~e~~~~~~ils~s~~~~~l~~~a~~pry~~~~~k~~~~~ls~~~l~~~~~~t~~l~~~~~~~~k~~~~~~l 702 (1518)
T KOG1997|consen 623 EFKLMEEPFEEKKSLDSILSDSNSRGLLSGHALDPRYVERTSKARIAYLSAPRLTFARDTTHTLLLSFLGDLKDTLTGSL 702 (1518)
T ss_pred HHHHHhhhhhhhHHHHHHhhccccccccccCCCCchhhhccccccchhhhhhHHhhhhhcchhhhhhhcccccccccccc
Confidence 9998887 345778888888999999999999999999999999999999999999999999876531 1111111
Q ss_pred -----CccccccccchhHHHHHhCcCccCcccCccc-ccccccccCCChhhhhhHHHHHHHHHhcCCHHHHHHHHHhCCh
Q psy17025 1181 -----SEESVESGLNQSVAMAIAGTSMFGIKTDNYK-LFQQTRKVNLSMDNTKNILICFLWILKNMDKDILKQWWAEMPV 1254 (2010)
Q Consensus 1181 -----~~~~~~~~~~~~v~~~i~g~~~~~~~~~~~~-~~~~~~~~~l~~~e~r~LL~CfLwILKnl~~~~L~~ww~~~~~ 1254 (2010)
....+.+.+.++|+++++|.+..+..+..+. ..+++....++.+++|++++|.|||+|++++..+..||.+.++
T Consensus 703 ~~~~~~~~~~~g~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~e~i~~~l~c~l~~~~~~~~~~l~~~~~~~~~ 782 (1518)
T KOG1997|consen 703 DSHELKLRDVNGSMPPEVALQLEGTPLNGYLWQASGKSLPVPSSNYLLREEIRQLLICRLGISKQALRRSLHRIWTQKLE 782 (1518)
T ss_pred cchhhhhcccccccChhhhhccCCCCcCCCchhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhcchhhccchhhccCh
Confidence 1123468899999999999876554322222 2223333389999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCccccccccccccccccccchhhhhHHHhcCcchhhHHhhhcccCCCCccccchhccc
Q psy17025 1255 SRLNQLLQVLGLCVSCFEYKGKTKVKPVASVSQKFANKTVDMKSKLEDVILGQGSARSEMMQRRKDKNLGMDKLRWRKDQ 1334 (2010)
Q Consensus 1255 ~~l~~fl~lL~~cl~~FeY~Gk~~~~~~~~~~~~~~~~s~~~k~~l~~~i~g~~~ar~~~~~r~~~~~~g~~~l~w~~~~ 1334 (2010)
.++.+++.+|++|+.+|+|.|++...+..+ .+ +.+..+++.+++.++.|.+++|.+|+.| .++++|.+..
T Consensus 783 ~~l~~~~~ll~l~v~~f~~~~~~a~~~~~s--~~-~~k~~~l~~~l~~~~~~~~~~~~~~~~r-------~~~~~~~~~~ 852 (1518)
T KOG1997|consen 783 LDLENLLALLELCVLVFRYNGKKAASRNIS--LD-FGKLDCLKTRLRGFFSRLIRTRAEMKRR-------NEPLRFSKEF 852 (1518)
T ss_pred hhHHHHHHHHHHHHhhhhhcchhhhhHHHh--hh-hHHHHHHHHHHHHHHHhhhhcchhhhhc-------cccchhHHHH
Confidence 999999999999999999999996666544 33 7788999999999999999999888887 3677999998
Q ss_pred cccccccCCCCCChhhhhhhhhhccchhhhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhcCCCcHHHHHHHH
Q psy17025 1335 MIYKSTLDMSEKPKTKLERNLNLEGNLATEVSFTILNTLELIVQVVQQCDHLHGLLGSVMKILLHAFSCNQSTAVMQSMF 1414 (2010)
Q Consensus 1335 ~~~~~~~~~~~~~~~~~~~~~l~e~nlatEv~liVLD~le~~~~~l~~~d~~~~ll~~vf~vll~~L~~nQS~~~l~~~f 1414 (2010)
+.|.+.......++.++.++++.++|||+||.++|+|+.+.|++.+...++.+++++++|++++++|+++||++++.|+|
T Consensus 853 ~~~~~~~~~~~~t~~~~~~e~~~~~~ls~E~~~~v~~v~~~~~~~a~~~~~~~~l~~~~~~~~~~ll~~~~se~~l~h~f 932 (1518)
T KOG1997|consen 853 FPAFNATFDLHGTKGTTLLEALQATNLSQEVLLIVLDVAQNLIRLAAYCDANDSLLGKALRILLNLLKSHQSETVLDHVF 932 (1518)
T ss_pred HHHhcCCcCCccchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 88877666667778888999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHhcCC
Q psy17025 1415 STQRSLVFKFPNLLFDEETEQCADLCLQLLKHSSSNLSLIRTNSAASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTS 1494 (2010)
Q Consensus 1415 aslR~~i~kF~~~LF~~~~~~c~~l~~~lL~~c~s~~~~lR~~A~~~Lyllmr~nf~~~~nf~rvk~q~i~aLs~Lv~~~ 1494 (2010)
|++|+|+.|||+++|++++++|+.||.++| ||.|+....|. ||++|+.+ +|+++|++++++.+++.+
T Consensus 933 A~~r~~~~kfp~l~fe~~~~~c~~~~~q~l-~c~ss~~~~r~---------~~~~~~~~---~~~~~q~~~~~~~~~~~~ 999 (1518)
T KOG1997|consen 933 ATLRLFALKFPDLLFEMDPEQCAHMLHQVL-HCESSRLATRQ---------KRNNFEAT---SRTLLQSTISVAAAEAKS 999 (1518)
T ss_pred HHHHHHHHHhHHHHHcCChHHHHHHHHHHh-hhhhhhHHHHH---------HHHhcccc---hhhhhhhhhhHHHHHhhh
Confidence 999999999999999999999999999999 99888877777 99999998 999999999999999988
Q ss_pred CCcchHHHHHHHHHHHhhhcccccccCCChHHHHHHHHHHHHHHHhhhHhhhhhcCCHHHHHHHHHHHHhhccCChhHHH
Q psy17025 1495 QSFNETSLRRSLKTILLYSEQDRELEDTTFPEQVKDLVFNLHMILSDTVKMKEFQEDPEMLLDLMYRIAKGYQNSPNLRL 1574 (2010)
Q Consensus 1495 ~~f~e~~lr~sL~~i~~~a~~D~~~~~t~F~~~v~~L~~~L~~il~dt~~m~e~~~DpE~l~dl~~~lA~~Y~~~PdLrl 1574 (2010)
..+..+++++++.+++.++++|..++.+.|+.+|++|+.||+++|++|++|++|++||||++||||++|++|+++||||+
T Consensus 1000 ~~~~~s~~~~~~~~l~~~~~~~~~~~~~~f~~~v~dl~~~l~~~l~~t~~mk~h~~d~~~~~dl~y~l~~~y~~~p~Lr~ 1079 (1518)
T KOG1997|consen 1000 VNSLRSRLLESLRLLLAPEKEDDNRKATAFPEQVKDLLRNLRTVLMATVQMKEHAMDPEMLADLMYQLAKSYANSPDLRI 1079 (1518)
T ss_pred cchHHHhhHHHHhhhcCchhhcchhhhcchHHHHHHHHHHHHHHHHHHHhHHHhhhCHHHHHHHHHHHHHhcCCChHHHH
Confidence 77778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCCccccCccCCCc
Q psy17025 1575 TWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQEGVCLGKD 1654 (2010)
Q Consensus 1575 ~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~~~~~g~~~~~~ 1654 (2010)
|||++||+.|.++|||+|||||++|+||+|||||..++ +.+++.||.+|.+|+||+.+|+++++|+.+++.+|+ +
T Consensus 1080 twl~~ma~~h~~~~~~~eaa~c~~~~aali~e~l~~r~-~~~~~~~~~~f~~i~~~v~ee~~~~~~~~~~d~~~~----~ 1154 (1518)
T KOG1997|consen 1080 TWLLSMAEIHEKNGNFAEAAQCYVHAAALIAEYLARRE-GSWLKVGWRAFQKITPNVLEESATKEDAGSPDEEGF----H 1154 (1518)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHhc-CCcccccchhhhccCcchhhhhccccccCCCCcccc----c
Confidence 99999999999999999999999999999999999987 689999999999999999999999999888887776 8
Q ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHh--cCCccccceEEEEEe
Q psy17025 1655 FTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAYVKLYQI--QGKRVFGTYFRVGFY 1732 (2010)
Q Consensus 1655 fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y~~I~~~--~~~R~~~~YfRV~Fy 1732 (2010)
|||+++++++++|+.+|++|++||...++||.++|+||++++|++|+.+|..++.+|++|.++ .++|.+|+|||||||
T Consensus 1155 ~te~~lv~~l~~~~~~~~~aelye~~~~v~kliipv~e~~~~~~~L~~~~~~l~~~~~~i~~~~~~~kr~~g~yfrv~fy 1234 (1518)
T KOG1997|consen 1155 FTEDGLVKLLELAAALLSKAELYELLAPVYKLIIPVLEKNRSFKKLAKVHALLQRAYDKILEVESSPKRCFGTYFRVGFY 1234 (1518)
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccccccccceeeeEeec
Confidence 999999999999999999999999999999999999999999999999999999999999985 479999999999999
Q ss_pred cccCCCCCCceEEecCCCCCChHHHHHHHHHHHHhhhCCccEEEcccCCccCCCCCCCCccEEEEEEeeeccCCcccccc
Q psy17025 1733 GMKFGDLNNEEFIYKEPTLTKLPEIFSRLENFYAERFGVNNIMIIKDSNPVDTMSLDPDIAYIQITYVEPYFENYEKRYR 1812 (2010)
Q Consensus 1733 G~~F~~l~~kefIYre~~~t~L~ef~~rL~~~y~~~~G~~~v~ii~ds~~vd~~~ld~~~~yIQIt~V~P~~~~~e~~~r 1812 (2010)
|..||+++|||||||||.+|+|+||++||.++|.++||+++|+||+||++|+.++|||+++|||||+|+|||+++|+.+|
T Consensus 1235 g~~fg~~~~~e~vykep~~t~l~eis~rl~~~y~~~fg~~~v~Ii~ds~~v~~~~Ldp~~aYiQIT~Vepyf~~~e~~~r 1314 (1518)
T KOG1997|consen 1235 GSKFGELDNKEYVYKEPALTKLAEISLRLEEFYTERFGADNVHIIKDSNPVDAEKLDPKKAYIQITYVEPYFEDYELDDR 1314 (1518)
T ss_pred hhhcccccchhhhhcchhhcchHHHHHHHHHHHHHhcCCCceEEecCCCcccHhhcCCCceEEEEEEeeccCchHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeecccCcEEEeeeeecCCCCCCccccceEEEEEEEeCcCCCCceeEEEEecceeEEeCHHHHHHHHHHHHHHHHH
Q psy17025 1813 ETHFEQNFNIKTFMYATPFTTTGKAHGELHEQYKRKTILTTATHFPYVKTRIQVVDRKQIILTPIEVAIEDIQKKTQELS 1892 (2010)
Q Consensus 1813 ~t~f~r~~ni~~F~f~tPft~~gk~~g~~~eq~krrTiltt~~~FP~i~~R~~Vv~~~~~~lsPIE~AIe~i~~K~~eL~ 1892 (2010)
.++|++|+|+++|+|++|||++||++|++.||||||||+||+++|||+++|++|++++++.|+|||+|||+|++|++||+
T Consensus 1315 ~t~F~~~~n~~rf~~e~pft~~gr~~g~l~Eq~krrtvltt~~~fpyvk~ri~vi~~~~~~l~pIEvaie~~~kkt~el~ 1394 (1518)
T KOG1997|consen 1315 ETYFERNTNISRFVYETPFTLSGRAHGELHEQCKRRTVLTTSNSFPYVKTRIPVISRSQIVLSPIEVAIEDMQKKTEELR 1394 (1518)
T ss_pred hhHHhhccCcceEEEecCCCcccccccchHHHhhccceecccccccchhhhcceehhhhcccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChhhHHHhhcceeccccccchHHHHHhccCCCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccCCcch
Q psy17025 1893 NSIRQEPPDPKILQMVLQGCIGTTVNQGPMEMAVVFLSDLLDGEKSPTKLQNKLRLCFKDFSKKCCDALRKNKTLIGPDQ 1972 (2010)
Q Consensus 1893 ~~~~~~~~d~~~Lq~~LqGsV~a~VNgGp~~ya~~FL~~~~~~~~~~~~~~~kLr~~f~~f~~~c~~aL~~~~~li~~d~ 1972 (2010)
.+++++++|+++|||+|||||+++||+||++||+|||++.+. +++++++++|||+||++|+++|++||++|++||++||
T Consensus 1395 ~~~~~~~~d~k~LQ~~LQGsV~~tVN~Gpl~~a~vFl~~~~~-~~~~~~~~~kLr~~fr~f~~~C~~Al~~n~~lI~~Dq 1473 (1518)
T KOG1997|consen 1395 KATNQEPPDPKMLQLVLQGSVGVTVNAGPLAYARVFLSEEPA-DRYPDRHLNKLRLCFREFMKVCQDALELNERLIGEDQ 1473 (1518)
T ss_pred HhcccCCCCHHHHHHHhhcceeceeccchHHHHHHHHccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 999999999999999999999999999999999999999988 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccCcccccc
Q psy17025 1973 KDYQKELERNYHRFTDKLMPLITFKHIDKLMPNA 2006 (2010)
Q Consensus 1973 ~~~h~~Le~~f~~l~~~l~~~~~~~~~~~~~~~~ 2006 (2010)
++||++|++||+.|.++|.++|++. ++|++.|.
T Consensus 1474 ~eyh~~L~~nf~~~~~~L~~~i~~~-~~~~~~~~ 1506 (1518)
T KOG1997|consen 1474 KEYHEELESNFDSLVERLSPFITAQ-LSQLLGPD 1506 (1518)
T ss_pred HHHHHHHHHhHHHHHHHhHHhHHHh-hhhccCCC
Confidence 9999999999999999999999999 99998764
No 2
>KOG1998|consensus
Probab=100.00 E-value=4.5e-84 Score=845.39 Aligned_cols=1137 Identities=20% Similarity=0.254 Sum_probs=824.9
Q ss_pred CCceEeeccCCCcccCCcccccceEEEecceeeecCCC-CCcceEEEEEEEEeCCCCCCcc-CceeCCCCCCCCceEEEE
Q psy17025 520 RPIKEILEFPLRETNLPHYLYRNLLFVYPKEINFTGRT-GSARNLTVKVQLMYGETPESAL-PAIFGKSSCPEFTTEAYT 597 (2010)
Q Consensus 520 ~~~~Ei~eFp~~~~~~P~~~y~N~LYVyP~~l~f~~~k-~~aRNI~v~V~l~~~d~~~~~l-~~Iygk~~~~~f~~~~~t 597 (2010)
..+...++||+ +++ .+.||++||....+.|+.++ ...|||.|+|.+.+.+ ++-+ -|+.|.+|.+. .+++++
T Consensus 242 s~itrk~gFp~--vim--gDvRNdlyitL~~gdf~~ggK~t~kNi~vtV~V~ev~--G~~l~d~~~~~sG~~~-i~~y~s 314 (1548)
T KOG1998|consen 242 SAVARKQGFPE--IIM--GDVRNDIYITLIQGDFSKGGKTTFINVEVTVSVLEVD--GKQLFDKTESGSGEPY-IPEYHS 314 (1548)
T ss_pred hHHHhhcCCch--hhc--cccccceeeeeeehhhhccccccceeEEEEEEEeecc--cceehhheeccCCCcc-cceeee
Confidence 35667899999 888 69999999999999999764 7789999999988533 4444 59999998864 899999
Q ss_pred EEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccC-C-eeecCcEEeeEeecCC
Q psy17025 598 SVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKD-G-QLQLNDFCLPVTLEAP 675 (2010)
Q Consensus 598 ~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~-g-~l~~ge~~LpV~~~~~ 675 (2010)
-|+||.+.|.|.+-+|+.||..-+..-|+.|.|+|++...+.+ ..+.+++++++-||++ | .+.+|.|.|-|++.+-
T Consensus 315 ~v~yh~~~p~w~E~~kv~lp~~~~~~~~lR~~frf~ss~dk~~--~~~k~f~~~~v~lmrd~G~~l~dg~h~L~v~k~d~ 392 (1548)
T KOG1998|consen 315 VVLYHQKAPRWTETIKVALPIDDFLDSHLRFLFRHCSTKDKTD--KEKKLFAFAFVKLMRDDGTTLEDGIHDLRVYKCDN 392 (1548)
T ss_pred eeeeccCCcchhhceeeeccchhhhhhhhHHHHHhhccccccC--ccCCceeeeEEEEeccCCccccCCceeEEEEeccc
Confidence 9999999999999999999999999999999999988887765 4678999999999986 7 4678999999999854
Q ss_pred C-----CCCcccCCC----------C--CCC-CCceecCCcceEEEEEEEeecccCCchHHHHHHHhhhhhccCCccCCC
Q psy17025 676 P-----PNYSYITPD----------V--LLP-GLKWVDNHKSIFNVVLSAASSIHPQDTHIHEFLSICDKLETGGVVSNR 737 (2010)
Q Consensus 676 p-----~~Y~~l~~~----------~--~~p-~~kwvd~~K~~F~v~t~~vSTv~tqD~~L~~ff~~~~~l~~~~~~p~~ 737 (2010)
| .+|+.+++. . ..| .....-.+|..|-++++.|||..|||.++...++|-..
T Consensus 393 ~~~~d~~n~~~~~~~e~~~~~k~~~~q~~s~~s~~~s~s~ke~~~ist~~~st~ltqN~dlL~ll~wr~~---------- 462 (1548)
T KOG1998|consen 393 PSLEDASNYLKLPSMEASLYDKGMDAQRKSPSSGGFSRSSKEFFFISTLLCSTKLTQNVDLLGLLKWRML---------- 462 (1548)
T ss_pred chhhhhhhhhhcccchHHHHhccccccccCccccceeeeccccceeeehhhcccccccHHHHHHHHHHhh----------
Confidence 3 344333220 0 011 12233357999999999999999999999998875211
Q ss_pred CCCcchHHHHHHHHHhcccCCcchhhhhhHHHHHHHHHHhcCccccCCcceehHHHHHHHHHHHHHHhcccccCcccccC
Q psy17025 738 LPEINFEAELRQKILNLVNCKLEPLIKFLTIILNKLIYLMTQPLCMNGQSLCISQTVFEVIGLIIKFVSAFSEDESDACG 817 (2010)
Q Consensus 738 l~~~~~e~~l~~~l~~L~~~~~~~lv~FLp~ILn~Lf~ll~~~~~i~g~~~~~~~~~f~~L~~iv~~~~~~~e~~~d~~~ 817 (2010)
...+...+.+|.+++++++++||.+||+.||.++.... ++...+..||.+++.|++.++.. ..++
T Consensus 463 ------~e~~~~~L~ql~~v~~eev~k~l~~iL~~L~~~~~~~~----~s~~~~~lVfd~lv~i~~l~~~~-----kf~~ 527 (1548)
T KOG1998|consen 463 ------PELLQDSLMQLANVSGEELVKFLQDILDALFVLLEEES----QSETYDELVFDVLVSILSLLADR-----KFQH 527 (1548)
T ss_pred ------HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhccccc----chhhccchhHHHHHHHHHHHHhh-----cccc
Confidence 13466778899999999999999999999999998864 36678899999999999998852 2366
Q ss_pred CcchhhhHhhhhccCCCCCchhhhhhhhhcccCCCCCCchhhHHhhhhcccccccccccCCCCCCccCcCccccccchhH
Q psy17025 818 RHPLLTSYVTYQCCIPHPDLEQKRSNMQRQKSSSNPDLQLDIEVQAYNARGLDRTCSMKAGQCADNFASGSKLNLCKILH 897 (2010)
Q Consensus 818 r~~lL~sYi~y~F~~~~~~~~~~~~~L~k~~s~s~~~~~~~~~~~~~~~~e~~~~~~~k~~~~~~~~~~~~~~~~~k~~h 897 (2010)
.++++..|++.||...... .++++. + .++.+. ..+.-|
T Consensus 528 ~rp~~~~~~~k~fs~~l~~-----~~l~~~-------------------------l-~~~~~~-----------~~~~~~ 565 (1548)
T KOG1998|consen 528 FRPVMNTYIKKHFSATLAY-----KKLTKV-------------------------L-KVHMDT-----------SISREH 565 (1548)
T ss_pred cccccHHHHHhHHHHHHHH-----hhhHHH-------------------------H-Hhhhcc-----------cccccc
Confidence 8899999999999876543 222211 0 001110 011223
Q ss_pred HHHHhhHhhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhhhccC--h
Q psy17025 898 EEIGLQWVVSSSTARENAMSHAWFFFDLMAKSMVEHLSITETMDSPRKMRFSDQYMEDIATLVTSFTSDIIAYCHKD--Y 975 (2010)
Q Consensus 898 eeLa~~~~~~~~~~~~~~l~~sWFfFelIvKSMa~~l~~~~~~~~pR~~RF~~~F~~~i~~Lv~~l~~~i~~r~~~~--~ 975 (2010)
++-+ ..+++.+-..|.+||.|...+...+... +.+.|......|+.++.+.+..-.... .
T Consensus 566 ~~~~-----------r~~~~~~~~ifkiiV~S~~~~~~~~e~~-------~~~~f~~~~~~lft~~~~~l~~~~~n~~ii 627 (1548)
T KOG1998|consen 566 NEEI-----------REAFKVLEYIFKIIVLSRKLFSRATEPS-------EEEEFRRQLKSLFTKILGGLASQSKNKEII 627 (1548)
T ss_pred cHHH-----------HHHHHhhhhceEEEEeecccccchhccc-------hhHHHHHHHhhhhhhcchhhhhhhhccccc
Confidence 3322 3778999999999999998876655432 357899999999999999886544332 1
Q ss_pred HHHHHHHhhHHHHHhhhh--cccchHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHhcCCcccccCCCCcccc
Q psy17025 976 KLTRSMNTSLAFFLFDLF--SFADRSFVFLLIKTYYKHVTAKISSLPDSIALSNLKLEFLRVVCSHEHFVPLNLPFGTVF 1053 (2010)
Q Consensus 976 ~~a~~lN~slA~Fl~dll--s~mDRGfVf~LI~~Y~~~~~~~~~s~~d~~~L~~~Kl~FLriicshEhfv~LNLP~~~~~ 1053 (2010)
..-..+-.+.+.-+.++. ...+-.-.+.+|-..+..+. +..+..-|+.++..|.+-..|-
T Consensus 628 ~~qea~l~~~~~i~~~~~~~~~~~~~el~~~i~~~~~~v~--------~~~~~~~kl~~~~kiV~~~lf~---------- 689 (1548)
T KOG1998|consen 628 RVQEAALKSIPTIDHDLLDELLFDPKELSLLILEFILNVP--------EKFLTQQKLNCLKKLVDSRLFS---------- 689 (1548)
T ss_pred chHHHHHhhcchhhhhhhhhcchhhHHHHHHHHHHhhccc--------hhhhhHHHHHHHHHHHHhhhhh----------
Confidence 111111122222222222 22222222222222222211 2345566666666665433211
Q ss_pred ccCCCCCCCCCCCCCCCcccccccccccCCCCcccccccccccccccHHHHHHHHHHHHhccChhHHHHHHH------HH
Q psy17025 1054 TANSSSTSPSPSTNSSTSQSSYMSSLISKDKSPFAELSLEFKQQHYLVGLILSEFAAMIEVQNHNFHNRIVT------LI 1127 (2010)
Q Consensus 1054 ~~~~~p~~~~ps~~s~~s~~~~~~~~~~~~~~~~~~Ls~~f~~~HfL~glLl~el~~~L~~~~~~lr~~Ai~------~L 1127 (2010)
.+=|++.||. .+--++...+.. ..+++.-|.. ++
T Consensus 690 --------------------------------------~s~~R~~ll~-~~~~~l~~~l~r-~~~~~~~as~~~~~~~~i 729 (1548)
T KOG1998|consen 690 --------------------------------------SSDCREQLLP-VITKHLKNHLPR-VDELSAPASVSPECTVLI 729 (1548)
T ss_pred --------------------------------------HHHHHHHHHH-HHHHHhhccCcc-hhhhhchhhccccchhhh
Confidence 0114444443 111112111111 0111110000 00
Q ss_pred HHHH-HhccCCcccccHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCCCCccccccccchhHHHHHhCcCccCcc
Q psy17025 1128 TDLM-ASHDCDARFVEPEAKARVAALYLPYIALTMDMLPNLHSGNDVSRIINPTSEESVESGLNQSVAMAIAGTSMFGIK 1206 (2010)
Q Consensus 1128 ~~LL-~khd~D~Ry~~~~~~arIA~LYlPll~ivld~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~g~~~~~~~ 1206 (2010)
..++ -+.+-+.||... ++..++.++.++ ++..+.+..-
T Consensus 730 ~~i~~~~~~~~~~~~~~------------~l~~l~~~~l~~---------------------~~~~~~~~~r-------- 768 (1548)
T KOG1998|consen 730 SSILEVLFEKVNRYLQS------------LLDSLCSALLRI---------------------VRRTVISMGR-------- 768 (1548)
T ss_pred hhhHHHHHHHHhhhhhh------------hHHHHHHHHHHH---------------------HhHHHHhhhh--------
Confidence 0000 011111122110 011111111111 1111111100
Q ss_pred cCcccccccccccCCChhhhhhHHHHHHHHHhcCCHHHHHHHHHhCC-hHHHHHHHHHHHHhhhcccccCCCcccccccc
Q psy17025 1207 TDNYKLFQQTRKVNLSMDNTKNILICFLWILKNMDKDILKQWWAEMP-VSRLNQLLQVLGLCVSCFEYKGKTKVKPVASV 1285 (2010)
Q Consensus 1207 ~~~~~~~~~~~~~~l~~~e~r~LL~CfLwILKnl~~~~L~~ww~~~~-~~~l~~fl~lL~~cl~~FeY~Gk~~~~~~~~~ 1285 (2010)
...+ .--+++.|++.++..++..+++.+|.... +.++.+|+ ......|+..+.+..
T Consensus 769 -----------~~~~---~~~~lvsc~la~l~~ms~~~ys~~~e~~k~~~~~~efl---~e~~~m~~~L~~k~v------ 825 (1548)
T KOG1998|consen 769 -----------VSNL---ILSHFVSCLLALLNQMSDQHYSHYIEEFKSDTDLKDFL---METFIMFRDLLGKNV------ 825 (1548)
T ss_pred -----------Hhhc---cchhhHHHhhhhhhhhhhhhHHHHHHhhcChHHHHHHH---HhHHHHHHHHccCcC------
Confidence 0000 01189999999999999999999999986 45555665 222234444433210
Q ss_pred ccccccccccchhhhhHHHhcCcchhhHHhhhcccCCCCccccchhccccccccccCCCCCChhhhhhhhhhccchhhhH
Q psy17025 1286 SQKFANKTVDMKSKLEDVILGQGSARSEMMQRRKDKNLGMDKLRWRKDQMIYKSTLDMSEKPKTKLERNLNLEGNLATEV 1365 (2010)
Q Consensus 1286 ~~~~~~~s~~~k~~l~~~i~g~~~ar~~~~~r~~~~~~g~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~l~e~nlatEv 1365 (2010)
.+-+|+.+++ + +
T Consensus 826 ----------------------------------------~P~~wm~m~~-------------------------l-~-- 837 (1548)
T KOG1998|consen 826 ----------------------------------------FPSDWMVMNM-------------------------L-Q-- 837 (1548)
T ss_pred ----------------------------------------CchHHHHHHH-------------------------h-h--
Confidence 1125665442 1 1
Q ss_pred HHHHHHHHHHHHHHHH-----hcccccchHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HhhccccccccchhhHHHH
Q psy17025 1366 SFTILNTLELIVQVVQ-----QCDHLHGLLGSVMKILLHAFSCNQSTAVMQSMFSTQRSL-VFKFPNLLFDEETEQCADL 1439 (2010)
Q Consensus 1366 ~liVLD~le~~~~~l~-----~~d~~~~ll~~vf~vll~~L~~nQS~~~l~~~faslR~~-i~kF~~~LF~~~~~~c~~l 1439 (2010)
+.++|-.+..+...+. .......+|..+|++.+.|+ +|..++|++...+.|.. ..++++++-..+.+ ...|
T Consensus 838 n~v~l~~l~~~~~~~~~~~ls~~~f~~qlw~~yf~lvvsFl--tq~sl~L~~~~~~~r~~i~~~ygdmr~~~a~~-l~sm 914 (1548)
T KOG1998|consen 838 NKVLLRSLNQYAKSANQKFLSSTSFDFQLWNEYFSLAVAFL--TQPSLQLEQFSIAKRKKILDKYGDMRKLMAFE-LRSM 914 (1548)
T ss_pred hHHHHHHHHHHHHhhccccCCcccccHHHHHhhhheeeEee--cChHhhhchhhcccchhhhhhhhHHHHHHHhh-hHHH
Confidence 6777888878877643 23456789999999988885 99999999999999976 66788888555544 4788
Q ss_pred HHHHHhhcC---------------CCchhHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHhcCCCCcchHHHHH
Q psy17025 1440 CLQLLKHSS---------------SNLSLIRTNSAASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQSFNETSLRR 1504 (2010)
Q Consensus 1440 ~~~lL~~c~---------------s~~~~lR~~A~~~Lyllmr~nf~~~~nf~rvk~q~i~aLs~Lv~~~~~f~e~~lr~ 1504 (2010)
|+.+..+.. -+..++|+..++++++||.+++...++|..+..++|..|+.++.+++++. .++.
T Consensus 915 w~~l~~~k~~~iP~mvg~~levtlv~~~e~R~a~i~iF~dmm~~E~r~~gsf~~~~seli~kLds~v~egk~~~--~~~e 992 (1548)
T KOG1998|consen 915 WSLLGQHKIHFIPSMVGPFLEVTLVPEPELRKATIPIFFDMMQCERRRSGSFQHFESELISKLDSLVSEGKGDE--SYKE 992 (1548)
T ss_pred HhhccccceeecccccCCccceeccCchhhhhhccccchHHHhhhhhhcCCchhhhhHhhhchhccccccccch--hhhh
Confidence 886655542 26899999999999999999999999999999999999999998887743 3455
Q ss_pred HHHHHHh-hhccccccc---CCChHHHHHHHHHHHHHHHhhhHhhhhhcCCHHHHHHHHHHHHhhcc--CChhHHHHHHH
Q psy17025 1505 SLKTILL-YSEQDRELE---DTTFPEQVKDLVFNLHMILSDTVKMKEFQEDPEMLLDLMYRIAKGYQ--NSPNLRLTWLA 1578 (2010)
Q Consensus 1505 sL~~i~~-~a~~D~~~~---~t~F~~~v~~L~~~L~~il~dt~~m~e~~~DpE~l~dl~~~lA~~Y~--~~PdLrl~wL~ 1578 (2010)
++..+.. ++..+..+. +..|...|..++.+++.+-.. |..-..|-+|. ++.++.+.|. +++++|++|++
T Consensus 993 l~~~i~~~~~~~~~~l~k~~~~~fv~~vl~~L~~~~d~~~~---~~~E~~d~~~~--~tv~L~~~y~e~nr~Emy~ryiy 1067 (1548)
T KOG1998|consen 993 LFRAILLEFGPRHKPLAKTVGEAFVRSVLRLLERLLDYRSI---MNGEEKDNKMS--CTVNLLNFYKEINREEMYIRYIY 1067 (1548)
T ss_pred hhhHhhhhccccCChhhhhhhhHHHHHHHHHHHHHHHHhhc---cchhhhhhhhH--HHHHHHHhcchhhhhHHHHHHHH
Confidence 6665543 454454433 234888888888888764221 21112233343 7778888884 89999999999
Q ss_pred HHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCCccccCccCCCccCHH
Q psy17025 1579 NMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQEGVCLGKDFTES 1658 (2010)
Q Consensus 1579 ~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~~~~~g~~~~~~fte~ 1658 (2010)
+|+++|.+.+||+|||.++. |+|+.|+|.++ ... ..| |+. ...|++
T Consensus 1068 kL~dlh~q~~n~~eAa~tL~----l~a~~L~wd~~-~~~----~~~----~~~---------------------~~q~~~ 1113 (1548)
T KOG1998|consen 1068 KLCDLHLQAENYTEAAFTLL----LHAGLLKWDDD-DLL----IQF----LPY---------------------PEQTHR 1113 (1548)
T ss_pred HHHHHHhhhhhHHHHHHHHH----HHHhhhhcCCc-hhc----ccC----CCC---------------------cccccH
Confidence 99999999999999999999 77788999542 211 000 111 112344
Q ss_pred H-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHHHHhcCCccccceEEEEEecccC
Q psy17025 1659 G-FVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEK-SRDYKKLSNIHSKLHDAYVKLYQIQGKRVFGTYFRVGFYGMKF 1736 (2010)
Q Consensus 1659 ~-l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~-~~dy~kLs~i~~~la~~y~~I~~~~~~R~~~~YfRV~FyG~~F 1736 (2010)
+ .+.|+++++.+|.||++||.|+.+||+|+++||+ .+||.+||.+|.++|++|++|.+. .|+.++||||||||.||
T Consensus 1114 q~KE~L~~e~~~~F~kGk~wE~ai~l~keL~~~Yen~~~Dy~~Ls~~~~~~A~~y~~i~~~--~R~~p~yf~V~fyG~gf 1191 (1548)
T KOG1998|consen 1114 QRKEYLYEEIIHYFDKGKMWEKAIALCKELAEQYENIIFDYNKLSELLIQIAQFYTNIMKI--LRPEPEYFRVGFYGQGF 1191 (1548)
T ss_pred HHHHHHHHHhhhccccccChhhhchHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHh--hcccccEEEEeccccCc
Confidence 4 5689999999999999999999999999999998 899999999999999999999987 79999999999999999
Q ss_pred C-CCCCceEEecCCCCCChHHHHHHHHHHHHhhhCCccEEEcccCCccCCCCCCCCccEEEEEEeeeccCCc------cc
Q psy17025 1737 G-DLNNEEFIYKEPTLTKLPEIFSRLENFYAERFGVNNIMIIKDSNPVDTMSLDPDIAYIQITYVEPYFENY------EK 1809 (2010)
Q Consensus 1737 ~-~l~~kefIYre~~~t~L~ef~~rL~~~y~~~~G~~~v~ii~ds~~vd~~~ld~~~~yIQIt~V~P~~~~~------e~ 1809 (2010)
| .++||+|||||.+++++.+|.+||.+.|+ +.++...++||...+++.++|||+..|+|..+.. ++
T Consensus 1192 P~~lrnk~fv~rg~~~E~~~~f~~rl~~e~~-------a~~~~~~~~p~~~i~nsp~qyi~~~~V~p~~~~~~~~~~~~v 1264 (1548)
T KOG1998|consen 1192 PKFLRNKVFVYRGLEYERIEAFQQRLLTEFP-------AEIMHTTSPPDDAILNSPGQYIQVFSVEPVLDISPNFNNDPV 1264 (1548)
T ss_pred chhhcCceEEEeCchHHHHHHHHHHHHHhCc-------hhhhcCCCCCcccccCCCcceeEEeeeccccccchhhcCCcc
Confidence 9 59999999999999999999999999998 3344556788988999999999999999997653 35
Q ss_pred ccccccceeecccCcEEEeeeeecCCCC-CCccccceEEEEEEEeCcCCCCceeEEEEecceeEEeCHHHHHHHHHHHHH
Q psy17025 1810 RYRETHFEQNFNIKTFMYATPFTTTGKA-HGELHEQYKRKTILTTATHFPYVKTRIQVVDRKQIILTPIEVAIEDIQKKT 1888 (2010)
Q Consensus 1810 ~~r~t~f~r~~ni~~F~f~tPft~~gk~-~g~~~eq~krrTiltt~~~FP~i~~R~~Vv~~~~~~lsPIE~AIe~i~~K~ 1888 (2010)
.+.+..|++.+|+++|.|.+| ++... .++++..|.+||+++|+.++|++++|.+|++....++||+||||+.|+.|+
T Consensus 1265 ~~~i~~~~~~~~vqrf~y~~~--~~~~~~~~ef~s~wier~~~~ta~~lp~~lr~~ev~~~~~~~~splenaie~m~~~~ 1342 (1548)
T KOG1998|consen 1265 SEQINKFYRYNEVQRFEYSRP--KGTVDPDNEFASLWIERTIYHTAYKLPGILRWFEVVKVTMSELSPLENAIETMQVKN 1342 (1548)
T ss_pred chHHHhhhheeeeeeEEEecc--ccccCcccchhhcceeeeeeeccccCcchhhhhhhheeeeeecchhhhhhhhhhhhH
Confidence 566788999999999999999 32222 458999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC----hhhHHHhhcceeccccccchHHHHHhccCCCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17025 1889 QELSNSIRQEPPD----PKILQMVLQGCIGTTVNQGPMEMAVVFLSDLLDGEKSPTKLQNKLRLCFKDFSKKCCDALRKN 1964 (2010)
Q Consensus 1889 ~eL~~~~~~~~~d----~~~Lq~~LqGsV~a~VNgGp~~ya~~FL~~~~~~~~~~~~~~~kLr~~f~~f~~~c~~aL~~~ 1964 (2010)
+||...+.++..| .+.|+|.|+|+|+|+|+||+..|.++|++.... +.. .+.+.+|+..+.+++..++.|+.+|
T Consensus 1343 ~el~~~~~~~~~d~~~~~~~lS~~~~g~v~a~vmgg~~~y~~~f~~~~~~-~~~-~~~~~~l~~li~eqi~~l~~~~~~h 1420 (1548)
T KOG1998|consen 1343 KELNEMILQYHSDPNLPINPLSMLLNGTVDAAVMGGISNYEKAFFTETYL-QFH-QDKLGRLKDLIAEQIPILGRCLTLH 1420 (1548)
T ss_pred HHHHHHHHHhccCCCccccccccccCCcccccccccHHHHHHHhhhhhhh-hcc-cchHHHHHHHHHhhhhhhhhhhhhh
Confidence 9999999875444 468999999999999999999999999987544 222 3447799999999999999999999
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHhhhcccccc
Q psy17025 1965 KTLIGPDQKDYQKELERNYHRFTDKLMPLITFK 1997 (2010)
Q Consensus 1965 ~~li~~d~~~~h~~Le~~f~~l~~~l~~~~~~~ 1997 (2010)
+.+++...+++|..|++.|...+.+.+.-+|.+
T Consensus 1421 ~~~~p~~~~p~h~~l~~~f~~~~~~~~~~~~~~ 1453 (1548)
T KOG1998|consen 1421 AELVPSKLRPFHDRLEECFKQLKAKVEEEYGVT 1453 (1548)
T ss_pred hhhCCCCCCCchhhhHHHHHhhHHHHHHhhccc
Confidence 999999999999999999999999887777654
No 3
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=100.00 E-value=1.1e-55 Score=482.73 Aligned_cols=178 Identities=64% Similarity=1.072 Sum_probs=167.5
Q ss_pred ccceEEEecceeeecCCCCCcceEEEEEEEEeCCCCCCccCce-eCCCCCCCCceEEEEEEeeecCCCCcceeEEEecCC
Q psy17025 540 YRNLLFVYPKEINFTGRTGSARNLTVKVQLMYGETPESALPAI-FGKSSCPEFTTEAYTSVIYHNKCPYVSDEIKIQLPP 618 (2010)
Q Consensus 540 y~N~LYVyP~~l~f~~~k~~aRNI~v~V~l~~~d~~~~~l~~I-ygk~~~~~f~~~~~t~V~yHnk~P~f~DEiKI~LP~ 618 (2010)
|||+|||||+++||+++++++|||+|+|+||++|+++.+++|| ||++++ .|+++++|+|+||||+|.|+|||||+||+
T Consensus 1 yrN~LYVyp~~~~f~~~~~~~rNI~V~v~l~~~d~~~~~l~~i~~g~~~~-~~~~~~~S~V~yHnk~P~f~DEiKi~LP~ 79 (179)
T cd08696 1 YRNLLYVYPQSLNFSNRLGSARNIAVKVQLMSGEDESQALPVIFKGSSPE-EFLTEAYTAVTYHNKSPDFYDEIKIKLPA 79 (179)
T ss_pred CcccEEEeccEEEecCCCCCcCCEEEEEEEEeCCCCCccceEEEeCCCCC-ccceeEEEEEEEeCCCCcccceEEEEcCC
Confidence 8999999999999999999999999999999988778899999 787766 79999999999999999999999999999
Q ss_pred CCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccCCeeecCcEEeeEeecCCCCCCcccCCCCCCCCCceecCCc
Q psy17025 619 TLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKDGQLQLNDFCLPVTLEAPPPNYSYITPDVLLPGLKWVDNHK 698 (2010)
Q Consensus 619 ~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~g~l~~ge~~LpV~~~~~p~~Y~~l~~~~~~p~~kwvd~~K 698 (2010)
+++++||||||||||||++|+++.+.|++|||||||||++|+|++|+|+|||+++.||++|+..++++.+|+++|+||||
T Consensus 80 ~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~g~L~~g~~~LpV~~~~~p~~~~~~~~~~~~~~~~~~d~~k 159 (179)
T cd08696 80 DLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRNGRLQSGEFNLPVSLEKPPSNYSPDSPEVKLPGTKWVDNHK 159 (179)
T ss_pred CCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecCCEEecCCEEEEEEecCCCccccccCccccCCccEEeeCCe
Confidence 99999999999999999988633378999999999999999999999999999998877788787788899999999999
Q ss_pred ceEEEEEEEeecccCCchHH
Q psy17025 699 SIFNVVLSAASSIHPQDTHI 718 (2010)
Q Consensus 699 ~~F~v~t~~vSTv~tqD~~L 718 (2010)
|+|+|++++||||||||+||
T Consensus 160 ~~f~v~~~~vSsv~~~d~~l 179 (179)
T cd08696 160 GVFSVSVEAVSSVHTQDSYL 179 (179)
T ss_pred eEEEEEEEEEeeEeecCCCC
Confidence 99999999999999999986
No 4
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=100.00 E-value=4.2e-53 Score=463.92 Aligned_cols=178 Identities=40% Similarity=0.720 Sum_probs=159.3
Q ss_pred ccceEEEecceeeecCCC--CCcceEEEEEEEEeCCC-CCCccCceeCCCCCCCCceEEEEEEeeecCCCCcceeEEEec
Q psy17025 540 YRNLLFVYPKEINFTGRT--GSARNLTVKVQLMYGET-PESALPAIFGKSSCPEFTTEAYTSVIYHNKCPYVSDEIKIQL 616 (2010)
Q Consensus 540 y~N~LYVyP~~l~f~~~k--~~aRNI~v~V~l~~~d~-~~~~l~~Iygk~~~~~f~~~~~t~V~yHnk~P~f~DEiKI~L 616 (2010)
|+|+|||||+++||++|| ++||||+|+||||++|+ .+++|+|||+++|++ |+++++|+|+|||++|.|+|||||+|
T Consensus 1 y~N~LYVYP~~l~~~~~k~~~kaRNI~V~V~lrd~D~~~~~~l~~I~~g~g~~-~~~~~~s~V~yh~k~P~f~dEiKI~L 79 (185)
T cd08697 1 YKNHLYVYPLHLKYDSQKTFAKARNIAVCIEFRDSDEEDAKPLKCIYYGPGGG-FTTSAYAAVLHHNQNPEFYDEIKIEL 79 (185)
T ss_pred CcceEEEcccEEEecccccccccccEEEEEEEEeCCCCcCccceEEecCCCCC-cceEEEEEEEEcCCCCccceeEEEec
Confidence 899999999999999998 89999999999999864 578899999998887 99999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEEeeeccccc---cCCCccceEEEEEeeccc-CCeeecCcEEeeEeecCCCCCCcccCCCCCCCCCc
Q psy17025 617 PPTLEDKHHLLFTFYHISCQKKL---EQNTVETPVGYTWLPLLK-DGQLQLNDFCLPVTLEAPPPNYSYITPDVLLPGLK 692 (2010)
Q Consensus 617 P~~l~~~hHLLFTFyHvsc~~k~---~~~~~et~vGyawLPLl~-~g~l~~ge~~LpV~~~~~p~~Y~~l~~~~~~p~~k 692 (2010)
|++++++||||||||||||+..+ .+.++|++|||||||||+ +|+|++|+|+|||+++.||..+++++....+|+++
T Consensus 80 P~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~~~~~l~~g~~~LpV~~~~p~~~~~~~~~~~~~~~~~ 159 (185)
T cd08697 80 PTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLKDKGRLNSEEQTPPVANLLPNYPDGYLSIQPHGPEVK 159 (185)
T ss_pred CCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeecCCCEEecCCEeeeEEecCCCCCccccccccCCCCcE
Confidence 99999999999999999998422 122689999999999999 56899999999999996543334455554589999
Q ss_pred eecCCcceEEEEEEEeecccCCchHH
Q psy17025 693 WVDNHKSIFNVVLSAASSIHPQDTHI 718 (2010)
Q Consensus 693 wvd~~K~~F~v~t~~vSTv~tqD~~L 718 (2010)
|+||+|++|+|++++||||||||+||
T Consensus 160 ~~d~~k~~f~v~~~~vSsv~tqd~~l 185 (185)
T cd08697 160 WVDGGKPLFKVSTHLVSTVYTQDQHL 185 (185)
T ss_pred EecCCeeEEEEEEEEEcceecCCCCC
Confidence 99999999999999999999999986
No 5
>KOG1997|consensus
Probab=100.00 E-value=3.8e-47 Score=490.97 Aligned_cols=1207 Identities=16% Similarity=0.049 Sum_probs=832.5
Q ss_pred ccccCCCCcchhhhhhcCCchhhHHHhHHHHhcCCcccccccccCCCCCCcccccCCCCCCCCCCCcEEEEEEecccccc
Q psy17025 172 DLLNSVSDPLIVSLLERIPSETIDQLNEVTRQEGRQDVLFSLYSTYQDDEPVEKRCIPNLPCEPLGHRILIKCLQLKLEL 251 (2010)
Q Consensus 172 ~l~~~~~d~~~~~ll~~~~~~~~d~~n~~~R~~~R~~~lf~l~p~~~~~~~~e~~~~~~~p~e~~g~rilv~c~~l~~~l 251 (2010)
+.+-...+++-|.+|++.++|-+++.++..+...++...+.+++...-+.-++.+. -..|.|..|+|+-|-|-....+.
T Consensus 3 ~~rpf~~~~lrpniLef~~~E~~~~~~~yR~~Ld~q~~~lqf~~~~n~a~ni~~~~-~~~~~e~~~~~~~v~~~~st~~~ 81 (1518)
T KOG1997|consen 3 ISRPFPGTRLRPNILEFPAREVIFPHTFYRNLLDVQPACLQFQILVNSAENILTRD-QTMPVEDAGIRRPVIFGKSTLRE 81 (1518)
T ss_pred CccCCCCCCCCCcccccCCccccccchhhhhHHhhhhHHHHHHHHhhhhhhhhhhh-hhchhhhhccchhhhHHHhhhHH
Confidence 44555566677778999888999999999999999999999988776566666666 78899999999999999999999
Q ss_pred cccceEEEEeeeeccCCeeeeeeeeeecCChhhhhccCCCCCCCCCCcccceEEEEeccCCCCeEEEEEEeeeeccCCCc
Q psy17025 252 DVEPMFATLALYDCRERKKVSENFYFDMNSENNRHMLSPHIPYVDCSTTSHACILNITHASPDLFLVIKLDKVLQGDINE 331 (2010)
Q Consensus 252 ~vEP~f~slaLyD~~~~~kISE~F~fdln~~~~~~~l~~~~~~~~~~~~~~~aiFsv~~p~~dI~LVirieKvlqGdi~~ 331 (2010)
.+++.|.+++-+|.....++|+.++|| .+.+.+|...+.-+...++.-+++++.+..|..++.++++-|+.+|+ .
T Consensus 82 ~lq~~~t~v~~~d~S~~~~~s~l~~ld--a~sl~nlh~~fv~yl~~sq~~~~~~~et~~~n~~~~~~i~~el~~q~---~ 156 (1518)
T KOG1997|consen 82 FLQEPPTTVNYHDKSIEFYESRLLSLD--AKSLAKLHLLFVFYLTSSQQHPGAIAETPKPNLWLLLLIRHELSLQS---D 156 (1518)
T ss_pred HhccCCcccccccccHHHHhhhhhcCC--chHHHHHHHHHHhhccccccchhhhhhcccccccchhhHHHHhhhcc---c
Confidence 999999999999999999999999999 66666666666666677778889999999999999999999999998 4
Q ss_pred cccCCccChh--HHHHHHHHHHHHHHhhcCCCcceeEeeeehhhhccCccCCCCCCCC------CCCC-CcccCCCCCch
Q psy17025 332 CAEPYMKDER--NIEKVRQNAAQSCERLGKYRMPFAWTAVYLMNVINGVSNIDGDCDS------QSSN-SLDRKSSGGAF 402 (2010)
Q Consensus 332 ~~epY~k~~k--~~~K~~~~~~~~c~rLg~yRmPFaW~a~~l~~~~~~~~~~~~~~~~------~~~~-~l~~~~s~~~~ 402 (2010)
|-++|+.+.| +..+... .+|++.+.+|+||.|..+||.+...+|+..+.--+. ...+ .+--..++...
T Consensus 157 ~~k~~lfn~k~~ys~mi~~---~~~~~~~~~r~~f~~~~~~l~sV~~~D~~~sk~f~~~~~~~~~a~p~~ll~~~~se~~ 233 (1518)
T KOG1997|consen 157 NLKVKLFNCKDRYSKMIIP---VYNSVGTWARGPFNPELIPLSSVHPQDPYLSKFFTALHSLEQNAFPHRLLTNLLSELP 233 (1518)
T ss_pred CCCccccCCChhhhhhccc---ccccccceeccccccccccceecCcCCcccCcceeeeeeccCccchhhhhhhhhhhhc
Confidence 4558886543 3333322 799999999999999999999988776554421111 0000 00000001111
Q ss_pred hhhhccccCCccccccCccccccC--CCcccccccCCCCCCCccceeeecceeeccCCcCChHHHHHHhhhcCCCccccc
Q psy17025 403 DQLRKRASDSSTLTRRGSLERRSN--SSDKRVSWNLDDLDSFRPVTLTVSSFFKQESDKLRDEDLYKFLQDLKKPCSLLK 480 (2010)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~f~p~~~~~~~~~kqe~~kl~dedL~k~L~d~kr~~~~~~ 480 (2010)
|.... .-+.+.+++|..||.-. +.|... ....+|+|+.++.-....|++.+-++++++|++..-|.+++.++
T Consensus 234 d~~e~--~lS~~~~~~g~pEr~~~f~~~~lfa----v~~l~~~pv~Ia~~e~~l~~n~t~~~e~lik~~h~sK~as~n~k 307 (1518)
T KOG1997|consen 234 DANEL--RLSFARTREGIPERLLKFLHQDLFA----VVHLHFRPVLIAGIEAVLQGNITESDEPLIKLSHNSKAASSNLK 307 (1518)
T ss_pred ccccc--ccchhhhhccCchhhhhccchhhhh----cccccccceEEEeeeeecccccccccchhhccCchhhhhhhhcc
Confidence 11000 01122346677777432 111111 24568999999999999999999999999999999999999999
Q ss_pred ccccccceeEEEeccCCCCCCccCCCCcccccCCCCCCCCCceEeeccCCCcccCCcccccceEEEecceeeecCCCCCc
Q psy17025 481 KLKSIPGCLKLDISPCPDEVKWCLTPELAEIVPRIGDKGRPIKEILEFPLRETNLPHYLYRNLLFVYPKEINFTGRTGSA 560 (2010)
Q Consensus 481 klk~ipg~l~~~i~~~~~~~~~~lt~sl~~v~P~~~~~~~~~~Ei~eFp~~~~~~P~~~y~N~LYVyP~~l~f~~~k~~a 560 (2010)
+-+|+++.+.-.+.|++..-.+ +.++..|-.+.. . --.++.+|+....+.++..+.|..|..|..+.....-+.+
T Consensus 308 ~~~c~~s~ig~Y~~plaw~ar~-l~~D~ap~~~~~---a-~~~hLls~~ssn~~s~~is~~~~d~~SPp~~~~~~~~sde 382 (1518)
T KOG1997|consen 308 GSKCTESPIGHYRMPLAWAARP-LPVDGAPPALLD---A-RNMHLLAFLSSNFASLCISLSNKDEQSPPKGYGVGIASDD 382 (1518)
T ss_pred cccccCCcccceecccccccCC-CCcCCCCccccc---c-chhhhhhhcchhHHHHHHHHHhccccCCcccccCCccchh
Confidence 9999999999999999887665 666655422211 1 1257888888778889999999999999999988776788
Q ss_pred ceEEEEEEEEeCCCCCCccCceeCCCCCC----CCceEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeecc
Q psy17025 561 RNLTVKVQLMYGETPESALPAIFGKSSCP----EFTTEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQ 636 (2010)
Q Consensus 561 RNI~v~V~l~~~d~~~~~l~~Iygk~~~~----~f~~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~ 636 (2010)
+|+.|....+......-.-.++||.+.+| .+..+..+.+.+|++.+++++++|+.++.-.-.+||+.||.||..|.
T Consensus 383 ~ls~V~~~kll~~t~~~ms~~l~~~sn~Pte~~~~~~~~~~~qn~~~~~~~~~~~~k~a~s~~~~~~~s~~~~iy~~~~r 462 (1518)
T KOG1997|consen 383 LLSMVEFFLLLIVTPFALSRALYYDSNAPTEEDKKIVERCIMQNVDCLLTERHERCKKALSFAKRQNSSLAFTIYHLLCR 462 (1518)
T ss_pred hhhhhhhHHHHhhhhHHHHHHHhccCCCCcchHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 99999888875443333336899999998 55577788999999999999999999999999999999999999999
Q ss_pred ccccC--CCccceEEEEEeecccCCeeecCcEEeeEeecCCCCCCcccCCCCCCCCCceecC--CcceEEEEEEEeeccc
Q psy17025 637 KKLEQ--NTVETPVGYTWLPLLKDGQLQLNDFCLPVTLEAPPPNYSYITPDVLLPGLKWVDN--HKSIFNVVLSAASSIH 712 (2010)
Q Consensus 637 ~k~~~--~~~et~vGyawLPLl~~g~l~~ge~~LpV~~~~~p~~Y~~l~~~~~~p~~kwvd~--~K~~F~v~t~~vSTv~ 712 (2010)
++.-+ .+++.+++|.|+++...+.+..+++.|+...+..+++|....+++.++..+|.+. .+-.+..-.-..+.++
T Consensus 463 ~~p~~~r~~~~~~~~~~~~v~~~~~~l~~~~i~l~~~~~~~~~~~a~~~~~~~s~~~~~~v~~~~r~~~~~l~~~~~~~~ 542 (1518)
T KOG1997|consen 463 IEPCKLRELVSLLDDKTSEVLESTLKLGFKQIILDHDLEVEMPRRAFSLRNYLSSILIQFVFLSLRHDESPLRAKGARIL 542 (1518)
T ss_pred cchhhcccchhhhhhhhHHHHHHHhhhcccccccHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 76532 2588999999999999999999999999999888899977767766777777665 5555555555566777
Q ss_pred CCchHHHHHHHhhhhhccCCccCCCCCCcchHHHHHHHHHhcccCCcchhhhhhHHHHHHHHHHhcCccccCCcceehHH
Q psy17025 713 PQDTHIHEFLSICDKLETGGVVSNRLPEINFEAELRQKILNLVNCKLEPLIKFLTIILNKLIYLMTQPLCMNGQSLCISQ 792 (2010)
Q Consensus 713 tqD~~L~~ff~~~~~l~~~~~~p~~l~~~~~e~~l~~~l~~L~~~~~~~lv~FLp~ILn~Lf~ll~~~~~i~g~~~~~~~ 792 (2010)
+-+.-++.||.-|+.+... .++..+........+.+....- .-+..+....++.+.++...+.-.+...++.-..|.
T Consensus 543 ~~~s~~~~~~~~~~~l~~~-~~~~~l~lp~~~~~~~~~~~~~--s~~~~~~~~~~~~~~kiv~~l~~ts~v~~q~~~~g~ 619 (1518)
T KOG1997|consen 543 VILSLLDEFFLRLEILCGH-EHIVQLNLPFVNQILKEMPVSN--SLGATESREVLTGVLKIVRNLDDTSLVKAQQQSIGS 619 (1518)
T ss_pred cHHHHHHHHHHHHHHHhhh-cchhhcccccccccchhcccCc--cccccceeccccchHHHHHHHHhhhHHHHHHHHhhh
Confidence 8888999999888877664 3333332333333333322111 112667777888888988888877655555556677
Q ss_pred HHHHHHHHHH------HHhccccc-CcccccCCcchhhhHhhhhccCCCCCchhhhhhhhhc------ccCCCCCCchh-
Q psy17025 793 TVFEVIGLII------KFVSAFSE-DESDACGRHPLLTSYVTYQCCIPHPDLEQKRSNMQRQ------KSSSNPDLQLD- 858 (2010)
Q Consensus 793 ~~f~~L~~iv------~~~~~~~e-~~~d~~~r~~lL~sYi~y~F~~~~~~~~~~~~~L~k~------~s~s~~~~~~~- 858 (2010)
+.++..+..+ ...+-..+ ...+.-++..+...|++.--..+.+..+.+.....+. -+.........
T Consensus 620 ~~l~~~~~~~~~~e~~~~~~ils~s~~~~~l~~~a~~pry~~~~~k~~~~~ls~~~l~~~~~~t~~l~~~~~~~~k~~~~ 699 (1518)
T KOG1997|consen 620 TFLEFKLMEEPFEEKKSLDSILSDSNSRGLLSGHALDPRYVERTSKARIAYLSAPRLTFARDTTHTLLLSFLGDLKDTLT 699 (1518)
T ss_pred HHHHHHHHhhhhhhhHHHHHHhhccccccccccCCCCchhhhccccccchhhhhhHHhhhhhcchhhhhhhccccccccc
Confidence 7777665544 22221111 0112345677888899877777665533322211110 00000000000
Q ss_pred hHHhhhhcccccccccccCCCCCCccCcCccccccchhHHHHHhhHhhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhcC
Q psy17025 859 IEVQAYNARGLDRTCSMKAGQCADNFASGSKLNLCKILHEEIGLQWVVSSSTARENAMSHAWFFFDLMAKSMVEHLSITE 938 (2010)
Q Consensus 859 ~~~~~~~~~e~~~~~~~k~~~~~~~~~~~~~~~~~k~~heeLa~~~~~~~~~~~~~~l~~sWFfFelIvKSMa~~l~~~~ 938 (2010)
++.+ +.+....+..+...++.+...-++.++..|....+....-. .+.|+.++.|.++|+.++.-..
T Consensus 700 ~~l~------------~~~~~~~~~~g~~~~~va~~~~~~~~~~~~~~~~~~~~~~~-~s~~l~~e~i~~~l~c~l~~~~ 766 (1518)
T KOG1997|consen 700 GSLD------------SHELKLRDVNGSMPPEVALQLEGTPLNGYLWQASGKSLPVP-SSNYLLREEIRQLLICRLGISK 766 (1518)
T ss_pred cccc------------chhhhhcccccccChhhhhccCCCCcCCCchhhhcCCCCCC-CcchhhHHHHHHHHHHHHHHHH
Confidence 1000 01111111111111112333445555655555444211111 2339999999999999999999
Q ss_pred CCCCCcCCCCChhHH-HHHHHHHHHHHHHHHhhhccChHHHHHHHhhHHHHHhhhhcccchHHHHHHHHHHHHHHhhhhc
Q psy17025 939 TMDSPRKMRFSDQYM-EDIATLVTSFTSDIIAYCHKDYKLTRSMNTSLAFFLFDLFSFADRSFVFLLIKTYYKHVTAKIS 1017 (2010)
Q Consensus 939 ~~~~pR~~RF~~~F~-~~i~~Lv~~l~~~i~~r~~~~~~~a~~lN~slA~Fl~dlls~mDRGfVf~LI~~Y~~~~~~~~~ 1017 (2010)
..+.++..|+.-++. .++.+++..+...+..-..++.+ +...|.++.++.-|++..++|||++.+++.|-....
T Consensus 767 ~~~~~~l~~~~~~~~~~~l~~~~~ll~l~v~~f~~~~~~-a~~~~~s~~~~k~~~l~~~l~~~~~~~~~~~~~~~~---- 841 (1518)
T KOG1997|consen 767 QALRRSLHRIWTQKLELDLENLLALLELCVLVFRYNGKK-AASRNISLDFGKLDCLKTRLRGFFSRLIRTRAEMKR---- 841 (1518)
T ss_pred hcchhhccchhhccChhhHHHHHHHHHHHHhhhhhcchh-hhhHHHhhhhHHHHHHHHHHHHHHHhhhhcchhhhh----
Confidence 898888899987776 67777777666655332223334 889999999999999999999999999999876442
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCcccccCCCCccccccCCCCCCCCCCCCCCCcccccccccccCCCCcccccccccccc
Q psy17025 1018 SLPDSIALSNLKLEFLRVVCSHEHFVPLNLPFGTVFTANSSSTSPSPSTNSSTSQSSYMSSLISKDKSPFAELSLEFKQQ 1097 (2010)
Q Consensus 1018 s~~d~~~L~~~Kl~FLriicshEhfv~LNLP~~~~~~~~~~p~~~~ps~~s~~s~~~~~~~~~~~~~~~~~~Ls~~f~~~ 1097 (2010)
-+..+-|++|+|...|.++..+.+.... ..+......|+.++-+.
T Consensus 842 -------------r~~~~~~~~~~~~~~~~~~~~~~t~~~~----------------------~~e~~~~~~ls~E~~~~ 886 (1518)
T KOG1997|consen 842 -------------RNEPLRFSKEFFPAFNATFDLHGTKGTT----------------------LLEALQATNLSQEVLLI 886 (1518)
T ss_pred -------------ccccchhHHHHHHHhcCCcCCccchhhh----------------------hHHHHHHhHHHHHHHHH
Confidence 1677889999999999998643221111 12234456788899999
Q ss_pred cccHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHhhccCCCC---C--C-
Q psy17025 1098 HYLVGLILSEFAAMIEVQNHNFHNRIVTLITDLMASHDCDARFVEPEAKARVAALYLPYIALTMDMLPNLHS---G--N- 1171 (2010)
Q Consensus 1098 HfL~glLl~el~~~L~~~~~~lr~~Ai~~L~~LL~khd~D~Ry~~~~~~arIA~LYlPll~ivld~~~~l~~---~--~- 1171 (2010)
|+.++..+-.++.. ..++..++++|+.++.++|..|+.|.++.+--...|...+|+|.+.+.++-...++. . .
T Consensus 887 v~~v~~~~~~~a~~-~~~~~~l~~~~~~~~~~ll~~~~se~~l~h~fA~~r~~~~kfp~l~fe~~~~~c~~~~~q~l~c~ 965 (1518)
T KOG1997|consen 887 VLDVAQNLIRLAAY-CDANDSLLGKALRILLNLLKSHQSETVLDHVFATLRLFALKFPDLLFEMDPEQCAHMLHQVLHCE 965 (1518)
T ss_pred HHHHHHHHHHHHhc-cCccHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhHHHHHcCChHHHHHHHHHHhhhh
Confidence 99998888888777 344699999999999999999999999999999999999999999888773322211 0 0
Q ss_pred -CC-------ccccCCCCccccccccchhHHHHHhCcCccCcccCcccccccccccCCChhhhhhHHHHHHHHHhcCCHH
Q psy17025 1172 -DV-------SRIINPTSEESVESGLNQSVAMAIAGTSMFGIKTDNYKLFQQTRKVNLSMDNTKNILICFLWILKNMDKD 1243 (2010)
Q Consensus 1172 -~~-------~~~~~~~~~~~~~~~~~~~v~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~e~r~LL~CfLwILKnl~~~ 1243 (2010)
+. .+..++.+. -...+++..++-+++++. .+.....+.......+.+....+..||.|.+|++-..
T Consensus 966 ss~~~~r~~~~~~~~~~~~-~~q~~~~~~~~~~~~~~~-----~~s~~~~~~~~l~~~~~~~~~~~~~~f~~~v~dl~~~ 1039 (1518)
T KOG1997|consen 966 SSRLATRQKRNNFEATSRT-LLQSTISVAAAEAKSVNS-----LRSRLLESLRLLLAPEKEDDNRKATAFPEQVKDLLRN 1039 (1518)
T ss_pred hhhHHHHHHHHhcccchhh-hhhhhhhHHHHHhhhcch-----HHHhhHHHHhhhcCchhhcchhhhcchHHHHHHHHHH
Confidence 00 000001000 012333333443443321 1111111222233566777888999999999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhhhcccccCCCcccccccc-cccccccc--ccchhhhhHHHhcCcchhhHHhhhccc
Q psy17025 1244 ILKQWWAEMPVSRLNQLLQVLGLCVSCFEYKGKTKVKPVASV-SQKFANKT--VDMKSKLEDVILGQGSARSEMMQRRKD 1320 (2010)
Q Consensus 1244 ~L~~ww~~~~~~~l~~fl~lL~~cl~~FeY~Gk~~~~~~~~~-~~~~~~~s--~~~k~~l~~~i~g~~~ar~~~~~r~~~ 1320 (2010)
|+.|.-.....+.+..--...+++..+.++|-+..+--... -+++..++ .+..+..+.++.+..+.+.+.+.|+.+
T Consensus 1040 -l~~~l~~t~~mk~h~~d~~~~~dl~y~l~~~y~~~p~Lr~twl~~ma~~h~~~~~~~eaa~c~~~~aali~e~l~~r~~ 1118 (1518)
T KOG1997|consen 1040 -LRTVLMATVQMKEHAMDPEMLADLMYQLAKSYANSPDLRITWLLSMAEIHEKNGNFAEAAQCYVHAAALIAEYLARREG 1118 (1518)
T ss_pred -HHHHHHHHHhHHHhhhCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999988777777776677788888888775433210000 01111111 234566667788777777777776641
Q ss_pred CCCCccccchhccccccccccCCCCCChhhhhhhhhhccchhhhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHh
Q psy17025 1321 KNLGMDKLRWRKDQMIYKSTLDMSEKPKTKLERNLNLEGNLATEVSFTILNTLELIVQVVQQCDHLHGLLGSVMKILLHA 1400 (2010)
Q Consensus 1321 ~~~g~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~l~e~nlatEv~liVLD~le~~~~~l~~~d~~~~ll~~vf~vll~~ 1400 (2010)
. ..+..|++.+.-..... .-..++.+ ....-.+|-..||.+|+-++.+... .+...+- ..++..|.++++..
T Consensus 1119 ~---~~~~~~~~f~~i~~~v~-ee~~~~~~-~~~~d~~~~~~te~~lv~~l~~~~~--~~~~ael-ye~~~~v~kliipv 1190 (1518)
T KOG1997|consen 1119 S---WLKVGWRAFQKITPNVL-EESATKED-AGSPDEEGFHFTEDGLVKLLELAAA--LLSKAEL-YELLAPVYKLIIPV 1190 (1518)
T ss_pred C---cccccchhhhccCcchh-hhhccccc-cCCCCcccccchHHHHHHHHHHHHH--HHHHhHH-HHHHHHHHHHHHHH
Confidence 1 35567877653221110 00111222 1223334457899999877655443 2333332 33889999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHhhcc
Q psy17025 1401 FSCNQSTAVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQLLKHSSSNLSLIRTNSAASLYLLMRQNFEIG 1473 (2010)
Q Consensus 1401 L~~nQS~~~l~~~faslR~~i~kF~~~LF~~~~~~c~~l~~~lL~~c~s~~~~lR~~A~~~Lyllmr~nf~~~ 1473 (2010)
|..+++-..|.++++.|+....|+++..+.. ..|.+.++.|+.+| +...+++...-.-.+..|....++.
T Consensus 1191 ~e~~~~~~~L~~~~~~l~~~~~~i~~~~~~~--kr~~g~yfrv~fyg-~~fg~~~~~e~vykep~~t~l~eis 1260 (1518)
T KOG1997|consen 1191 LEKNRSFKKLAKVHALLQRAYDKILEVESSP--KRCFGTYFRVGFYG-SKFGELDNKEYVYKEPALTKLAEIS 1260 (1518)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhhcccc--ccccceeeeEeech-hhcccccchhhhhcchhhcchHHHH
Confidence 9999999999999999999999999998766 78999999999999 8777777777666666666655554
No 6
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=100.00 E-value=3.5e-42 Score=385.98 Aligned_cols=177 Identities=46% Similarity=0.770 Sum_probs=115.5
Q ss_pred CcccccceEEEecceeeecCC-CCCcceEEEEEEEEeCCCCCCccCceeCCCCCCCCceEEEEEEeeecCCCCcceeEEE
Q psy17025 536 PHYLYRNLLFVYPKEINFTGR-TGSARNLTVKVQLMYGETPESALPAIFGKSSCPEFTTEAYTSVIYHNKCPYVSDEIKI 614 (2010)
Q Consensus 536 P~~~y~N~LYVyP~~l~f~~~-k~~aRNI~v~V~l~~~d~~~~~l~~Iygk~~~~~f~~~~~t~V~yHnk~P~f~DEiKI 614 (2010)
|+++|||+|||||++++|++. ++++|||+|+|++|++|+...+++|||++.+++.+.++++|+|.||+++|.|+|||||
T Consensus 1 ~~~~~rN~LYv~~~s~~f~k~~k~~~rNi~v~v~lr~~d~~~~~~~~i~~~~~~~~~~~~~~S~v~yh~k~P~f~deiKi 80 (184)
T PF14429_consen 1 PPTDYRNDLYVYPKSGNFSKSKKSSARNIEVTVELRDSDGNIKPLPCIYSRSSGPSFVTSYYSSVYYHNKNPQFNDEIKI 80 (184)
T ss_dssp ------EEEEEEEEEEE-SSSSSSS---EEEEEEEEETTS--B--S-EE-TTS--S-BS-EE----TT-SS-EEEEEEEE
T ss_pred CCCceeeeEEEEeCEEEECCCCCCCcccEEEEEEEEeCCCCccccceEECCCCCCCcceEEEEEEEecCCCCCccEEEEE
Confidence 678999999999999999754 4679999999999987643368999999999988999999999999999999999999
Q ss_pred ecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccCCe-eecCcEEeeEe-----ecCCCCCCcccCCCCCC
Q psy17025 615 QLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKDGQ-LQLNDFCLPVT-----LEAPPPNYSYITPDVLL 688 (2010)
Q Consensus 615 ~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~g~-l~~ge~~LpV~-----~~~~p~~Y~~l~~~~~~ 688 (2010)
+||.+++++||||||||||+|++++++ +++||||||||+++|+ +.+|+|+|||+ ...+|++|+..+++.
T Consensus 81 ~LP~~l~~~~HLlFtf~h~s~~~~~~~---~~~~g~a~lpL~~~g~~i~dg~~~L~v~~~~~~~~~~~~~Yl~~~~~~-- 155 (184)
T PF14429_consen 81 QLPPDLFPKHHLLFTFYHVSCKESKEK---SKPFGYAFLPLMDNGTIIQDGEHELPVYKYDKKSKELPSNYLSLPSEA-- 155 (184)
T ss_dssp EE-CCCCTTEEEEEEEEE---SSSS-S---S-EEEEEEEESB-TS-B--SEEEEEEEEE--HHHHT-HHHHTTS--BH--
T ss_pred EcCchhcccEEEEEEEEeeccccccCc---cceeEEEEEEeeeCCeEecCCCEEEEEEEcccccccCchhhccCCccc--
Confidence 999999999999999999999987653 3899999999999998 77999999999 446889997766541
Q ss_pred CCCceecCCcceEEEEEEEeecccCCchHH
Q psy17025 689 PGLKWVDNHKSIFNVVLSAASSIHPQDTHI 718 (2010)
Q Consensus 689 p~~kwvd~~K~~F~v~t~~vSTv~tqD~~L 718 (2010)
..+|++++|+.|+|+|++|||+||||++|
T Consensus 156 -~~~~~~~~k~~~~v~t~l~ST~~tqd~~L 184 (184)
T PF14429_consen 156 -RGKWLDNKKPTFTVRTRLCSTVYTQDPNL 184 (184)
T ss_dssp -HHTTEEEECEEEEEEEEEE----------
T ss_pred -ccccccCCCCEEEEEEEEEcCccCCCCCC
Confidence 22899999999999999999999999986
No 7
>PF06920 Ded_cyto: Dedicator of cytokinesis; InterPro: IPR010703 This family represents a conserved region of approximately 200 residues within a number of eukaryotic dedicator of cytokinesis (DOCK) proteins. These proteins are potential guanine nucleotide exchange factors that activate some small GTPases, such as Rac, by exchanging bound GDP for free GTP []. DOCK proteins are required during several cellular processes, such as cell motility and phagocytosis. For instance, DOCK2 is specifically expressed in haemopoietic cells, and plays a critical role in lymphocyte migration [].; GO: 0005085 guanyl-nucleotide exchange factor activity, 0005525 GTP binding, 0051020 GTPase binding; PDB: 2WMO_A 2WM9_A 2WMN_A 3VHL_A 3B13_A 2YIN_B.
Probab=100.00 E-value=2.3e-39 Score=360.39 Aligned_cols=178 Identities=41% Similarity=0.601 Sum_probs=164.4
Q ss_pred ccceeecccCcEEEeeeeecCCCCCCccccceEEEEEEEeCcCCCCceeEEEEecceeEEeCHHHHHHHHHHHHHHHHHH
Q psy17025 1814 THFEQNFNIKTFMYATPFTTTGKAHGELHEQYKRKTILTTATHFPYVKTRIQVVDRKQIILTPIEVAIEDIQKKTQELSN 1893 (2010)
Q Consensus 1814 t~f~r~~ni~~F~f~tPft~~gk~~g~~~eq~krrTiltt~~~FP~i~~R~~Vv~~~~~~lsPIE~AIe~i~~K~~eL~~ 1893 (2010)
|+|++++|+++|+|++||+++|+++|++++||+|||||+|+++||++++|++|+++++++|||||+||++|++|+++|.+
T Consensus 1 t~f~~~~~i~~F~~~~pf~k~~~~~~~~~~~~~~kti~~t~~~fP~ilrR~~V~~~~~~~lsPie~Aie~i~~k~~eL~~ 80 (178)
T PF06920_consen 1 TQFYRNNNINKFSYERPFTKDGKKQGEVAEQWKEKTILTTEDPFPSILRRSEVISKEEIELSPIENAIEDIEKKNKELEE 80 (178)
T ss_dssp SCHHHCSSEEEEEEEEEEETTSSSS-TTCCEEEEEEEEEEEEEESSSSSEEEEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CceEEecCcCeEEeccceecCCCCCCcHhhheeeeEEEEecCCCCCcceeeeecccCcEEcCHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhhHHHhhcceeccccccchHHHHHhccCCCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchH
Q psy17025 1894 SIRQEPPDPKILQMVLQGCIGTTVNQGPMEMAVVFLSDLLDGEKSPTKLQNKLRLCFKDFSKKCCDALRKNKTLIGPDQK 1973 (2010)
Q Consensus 1894 ~~~~~~~d~~~Lq~~LqGsV~a~VNgGp~~ya~~FL~~~~~~~~~~~~~~~kLr~~f~~f~~~c~~aL~~~~~li~~d~~ 1973 (2010)
++.+..+|++.|||.|||+|+|+|||||.+|+++||++.+. ++...+++++|+.+|.+|+..|++||.+|+++|++++.
T Consensus 81 ~~~~~~~~~~~L~~~L~G~v~a~VngG~~~y~~~Fl~~~~~-~~~~~~~~~~L~~~~~~~~~~~~~~L~~h~~~~~~~~~ 159 (178)
T PF06920_consen 81 LINSYKPNINPLQMLLQGSVDAAVNGGPSKYAEAFLSPEYL-HPEDKELVEKLKEAFIDQLIVLERALELHKKLCSPEQR 159 (178)
T ss_dssp HHHHSSS-HHHHHHHHHHHHS-SSS-TTHHHHHHHSSCHHC-SHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--GGGH
T ss_pred HHHhhccchhHHHHHhcccccccccCchHHHHHHHcCcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCChhHH
Confidence 99988899999999999999999999999999999998765 66777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q psy17025 1974 DYQKELERNYHRFTDKLMP 1992 (2010)
Q Consensus 1974 ~~h~~Le~~f~~l~~~l~~ 1992 (2010)
+||++|+++|+.|+++|++
T Consensus 160 ~lh~~le~~f~~~~~~l~~ 178 (178)
T PF06920_consen 160 PLHEELESGFENLKKELEP 178 (178)
T ss_dssp HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999875
No 8
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=100.00 E-value=8.4e-39 Score=350.15 Aligned_cols=175 Identities=19% Similarity=0.243 Sum_probs=150.4
Q ss_pred ccceEEEecceeeecCC-CCCcceEEEEEEEEeCCCCCCccCceeCCCCCCCCceEEEEEEeeecCCCCcceeEEEecCC
Q psy17025 540 YRNLLFVYPKEINFTGR-TGSARNLTVKVQLMYGETPESALPAIFGKSSCPEFTTEAYTSVIYHNKCPYVSDEIKIQLPP 618 (2010)
Q Consensus 540 y~N~LYVyP~~l~f~~~-k~~aRNI~v~V~l~~~d~~~~~l~~Iygk~~~~~f~~~~~t~V~yHnk~P~f~DEiKI~LP~ 618 (2010)
.||+|||||.+++|+++ ++++|||+|+|+||+. +++.|++++++++|+++.++++|.|+||+++|.|+|||||.||+
T Consensus 1 vRNdLYvtl~~~~f~~~~~s~~rNIeVtv~vr~~--~G~~i~~~i~~gsg~~~~se~~S~V~Yh~~~P~W~EtIKl~lP~ 78 (196)
T cd08694 1 VRNDLYLTLVQGDFDKGSKTSDKNVEVTVSVCNE--DGKIIPGVISLGAGEEPIDEYKSVIYYQVDKPKWFETFKVAIPI 78 (196)
T ss_pred CCccEEEEeeeeEEcCCCCCCcceEEEEEEEECC--CCCCCceeEEcCCCCCcceeEEEEEEeecCCCCCceeEEEecCh
Confidence 48999999999999998 4889999999999974 46779988888888899999999999999999999999999999
Q ss_pred CCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccC-C-eeecCcEEeeEeecC------CCCCCcccCCCC---C
Q psy17025 619 TLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKD-G-QLQLNDFCLPVTLEA------PPPNYSYITPDV---L 687 (2010)
Q Consensus 619 ~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~-g-~l~~ge~~LpV~~~~------~p~~Y~~l~~~~---~ 687 (2010)
+++++|||+|||||+||++++++ .|+||||||||||++ | .|.+|.|+|+||+.+ .+.+|+.++... .
T Consensus 79 ~~~~~~HL~FtfrH~S~~~~kd~--~e~pfg~s~lpL~~~~gt~l~dG~H~L~vYK~d~~~~~~~~~~Yl~lP~~~~~~~ 156 (196)
T cd08694 79 EDFKSSHLRFTFKHRSSNEAKDK--SEKPFALSFVKLMQENGTTLTDGEHDLIVYKVDAKKKLEDAKAYLSLPSTRAELE 156 (196)
T ss_pred hhCCCeEEEEEEEeeccccccCC--CCCceEEEEEeeeccCCcEEccCCEEEEEEEeccccccccccceeeCCcchhhcc
Confidence 99999999999999999988774 799999999999975 6 699999999999843 236788776521 1
Q ss_pred --CCCC-------ceecCCcceEEEEEEEeecccCCchHH
Q psy17025 688 --LPGL-------KWVDNHKSIFNVVLSAASSIHPQDTHI 718 (2010)
Q Consensus 688 --~p~~-------kwvd~~K~~F~v~t~~vSTv~tqD~~L 718 (2010)
.|.. ......|..|.|+|.+|||++|||.+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~kd~f~i~t~lcSTklTQn~dl 196 (196)
T cd08694 157 ARKSSPSGSASNLGLSLSSKDSFQISTLVCSTKLTQNVDL 196 (196)
T ss_pred ccCCCCcccccccccccCCcceEEEEEEEecceecccCCC
Confidence 1111 123345999999999999999999764
No 9
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=100.00 E-value=9.2e-39 Score=356.05 Aligned_cols=170 Identities=36% Similarity=0.583 Sum_probs=146.3
Q ss_pred ccceEEEecceeeecCCCCCcceEEEEEEEEeCCCCCCccCceeCCCCCCCCceEEEEEEeeecCCCCcceeEEEecCCC
Q psy17025 540 YRNLLFVYPKEINFTGRTGSARNLTVKVQLMYGETPESALPAIFGKSSCPEFTTEAYTSVIYHNKCPYVSDEIKIQLPPT 619 (2010)
Q Consensus 540 y~N~LYVyP~~l~f~~~k~~aRNI~v~V~l~~~d~~~~~l~~Iygk~~~~~f~~~~~t~V~yHnk~P~f~DEiKI~LP~~ 619 (2010)
|+|+|||||++++|+++++++|||+|+|+||++|+. ...+|||+ ++...+..++|++|+||+++|.|+|||||+||++
T Consensus 1 ~rN~LYi~p~~~~~~~~~~~~rNi~v~v~~r~~d~~-~~~~~i~~-~~~~~~~~s~~~sv~~~~k~p~f~deiKi~LP~~ 78 (178)
T cd08679 1 LRNDLYVYPQSGELSKAKSKGRNIEITVEVRDDDGD-IIEPCISA-PGSGSELRSEYTSVVYYHKNPVFNDEIKIQLPAD 78 (178)
T ss_pred CCccEEEEeeEEEEcCCCCccccEEEEEEEEcCCCC-cccccEEE-cCCCCccceeEEEEEEcCCCCCCceeEEEecCCc
Confidence 699999999999999988899999999999987532 34478995 3333477888888888889999999999999999
Q ss_pred CCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc-CCe-eecCcEEeeEeecCC-----CCCCcccCCCCCCCCCc
Q psy17025 620 LEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK-DGQ-LQLNDFCLPVTLEAP-----PPNYSYITPDVLLPGLK 692 (2010)
Q Consensus 620 l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~-~g~-l~~ge~~LpV~~~~~-----p~~Y~~l~~~~~~p~~k 692 (2010)
++++||||||||||+|++++++ +.+++||||||||++ +|+ +++|+|+|||+++.. |++|+. +|..+
T Consensus 79 l~~~~HLlFtf~hv~~~~~~~~-~~~~~~g~a~lpL~~~~g~~i~dg~~~L~v~k~~~~~~~~~~~yl~------~~~~~ 151 (178)
T cd08679 79 LTPQHHLLFTFYHVSSKKKQGD-KEETPFGYAFLPLMDKDGAFIKDGDHTLPVYKYDKRPDVGPSGYLS------LPSTL 151 (178)
T ss_pred cCCCeEEEEEEEccccccccCC-CccceEEEEEEeccccCCcEEcCCCEEEEEEecCCccccCcccccc------Chhhh
Confidence 9999999999999999987432 579999999999998 775 789999999999863 456632 57788
Q ss_pred eecCCc-ceEEEEEEEeecccCCchHH
Q psy17025 693 WVDNHK-SIFNVVLSAASSIHPQDTHI 718 (2010)
Q Consensus 693 wvd~~K-~~F~v~t~~vSTv~tqD~~L 718 (2010)
|.++++ +.|+|+|++|||+||||++|
T Consensus 152 ~~~~~~~~~f~v~t~l~ST~~tqd~~l 178 (178)
T cd08679 152 ANGKSSKDTFKIKTRLCSTILTQDKSL 178 (178)
T ss_pred cccccCCceEEEEEEEEccccccCCCC
Confidence 877765 99999999999999999875
No 10
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=100.00 E-value=4.1e-38 Score=345.29 Aligned_cols=173 Identities=24% Similarity=0.307 Sum_probs=150.3
Q ss_pred ccceEEEecceeeecCCC-CCcceEEEEEEEEeCCCCCCccCceeCCCCCCCCceEEEEEEeeecCCCCcceeEEEecCC
Q psy17025 540 YRNLLFVYPKEINFTGRT-GSARNLTVKVQLMYGETPESALPAIFGKSSCPEFTTEAYTSVIYHNKCPYVSDEIKIQLPP 618 (2010)
Q Consensus 540 y~N~LYVyP~~l~f~~~k-~~aRNI~v~V~l~~~d~~~~~l~~Iygk~~~~~f~~~~~t~V~yHnk~P~f~DEiKI~LP~ 618 (2010)
.||+|||+|.+++|++++ +++|||+|+|+||+++. ...-.|||+.+|.+. +++++|+|+|||++|.|+|||||.||+
T Consensus 1 vRNdlYvtl~~g~f~~~~k~~~rNIeV~v~v~~~~G-~~~~~cI~~~~g~~~-~se~~S~V~yH~~~P~W~EtiKi~lP~ 78 (189)
T cd08695 1 VRNDLYLTLERGEFEKGGKSTAKNIEVTMVVLDADG-QVLKDCISLGSGEPP-CSEYRSFVLYHNNSPRWNETIKLPIPI 78 (189)
T ss_pred CcccEEEEeeeeEEcCCCCCCcceEEEEEEEEcCCC-CCccCCEEcCCCCCc-cceEEEEEEEcCCCCCCceeEEEecCh
Confidence 489999999999999874 88999999999997532 223379999988875 889999999999999999999999999
Q ss_pred CCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccC-Ce-eecCcEEeeEeecC------CCCCCcccCCCC----
Q psy17025 619 TLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKD-GQ-LQLNDFCLPVTLEA------PPPNYSYITPDV---- 686 (2010)
Q Consensus 619 ~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~-g~-l~~ge~~LpV~~~~------~p~~Y~~l~~~~---- 686 (2010)
+++++|||+|||||+||++|++ ++||||||||||++ |+ |.+|.|.|.||+.+ .|.+|+.+++..
T Consensus 79 ~~~~~~HL~FtfrH~S~~~k~~----~~pfg~s~lpL~~~~gt~l~Dg~H~L~vyk~d~~~~~~~~~~YL~lp~~~~~~~ 154 (189)
T cd08695 79 DKFRGSHLRFEFRHCSTKDKGE----KKLFGFSFVPLMREDGTTLPDGSHELYVYKCDENATFLDPALYLGLPCSKEDFQ 154 (189)
T ss_pred hhCCCeeEEEEEEEeeeccCCC----CCceEEEEEeecccCCcEEcCCcEEEEEEeccccccccCccceEECCccccccc
Confidence 9999999999999999998653 58999999999986 64 78999999999853 357898887631
Q ss_pred ---CCCCCceecCCcceEEEEEEEeecccCCchHH
Q psy17025 687 ---LLPGLKWVDNHKSIFNVVLSAASSIHPQDTHI 718 (2010)
Q Consensus 687 ---~~p~~kwvd~~K~~F~v~t~~vSTv~tqD~~L 718 (2010)
..|+.+|..+.|+.|+|+|.+|||++|||.+|
T Consensus 155 ~~~~~~~~~~~~~~k~~~~I~T~LcSTklTQn~~l 189 (189)
T cd08695 155 GCPNSPSPLFSRSSKESFWIRTLLCSTKLTQNVDL 189 (189)
T ss_pred ccCCCCccccccCCcceEEEEEEEEcceEeecCCC
Confidence 24666899999999999999999999999764
No 11
>PF11878 DUF3398: Domain of unknown function (DUF3398); InterPro: IPR021816 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is about 100 amino acids in length.
Probab=99.92 E-value=9.6e-26 Score=224.70 Aligned_cols=94 Identities=41% Similarity=0.733 Sum_probs=83.9
Q ss_pred HhhccccCCCccccccCCCCCCceEEEeeccccccCCCCCCCCCCC-CChHHHHHHHhhccccEEEeccccccCCcccc-
Q psy17025 36 LQQSLLIDRDPLKHLLEFPVDDIQVCVLPRKIRTVKPLLPKEPLSE-LEPHVRECIECYTRNWIYVDYRYRHFSTSSWF- 113 (2010)
Q Consensus 36 ~~~~~~~~~d~~r~ll~fP~dD~~~~~~~r~~RT~~~~vP~~~~~~-~~~~v~e~i~~Y~~~w~vv~~ky~~~s~~~~~- 113 (2010)
.||++++++||||+||+||.|||++.++||++||++|+||+++.+. .++||||||++||+||+||+|||++|||+|+.
T Consensus 1 ~~~~~~~~~dplr~Ll~FP~DDi~~~~~pRe~RT~~~~vPe~~~~~a~~~~Vreci~~Yt~dW~vV~~ky~~yS~~~~~~ 80 (98)
T PF11878_consen 1 IQHKNQIENDPLRELLLFPSDDIEVVTIPRECRTVQPSVPEEAEELAEDLFVRECIKSYTSDWHVVNRKYQQYSGSYRPL 80 (98)
T ss_pred CCCccccccchhhhhccCCCcccEEEeccccccccCCCCCchHhhhccChHHHHHHHHhCcCcEEEeeehhhcCcccccc
Confidence 3789999999999999999999999999999999999999998532 26799999999999999999999999999995
Q ss_pred c--ccccccCCCCCcccc
Q psy17025 114 I--DRTTLASNLPRQEFE 129 (2010)
Q Consensus 114 ~--~~~~~~~~l~~q~fe 129 (2010)
+ .+....+.||+|+||
T Consensus 81 ~~~~~~~~~k~l~~qvFE 98 (98)
T PF11878_consen 81 LPEKRREPEKGLPKQVFE 98 (98)
T ss_pred CchhhcccccCCcccccC
Confidence 3 234555669999998
No 12
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.60 E-value=0.15 Score=55.72 Aligned_cols=78 Identities=26% Similarity=0.413 Sum_probs=57.5
Q ss_pred EEEEeeec-CCCCcceeEEEecC-CCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc-CCeeecCcEEeeEee
Q psy17025 596 YTSVIYHN-KCPYVSDEIKIQLP-PTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK-DGQLQLNDFCLPVTL 672 (2010)
Q Consensus 596 ~t~V~yHn-k~P~f~DEiKI~LP-~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~-~g~l~~ge~~LpV~~ 672 (2010)
.|.+...+ ..|.|.+.+...++ .+|-....|-|+.|.+...++..+ .. +++|++-+||+. +|.|+.|.+.|++-.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~-~~-~~lgw~n~~lFd~~~~L~~G~~~L~lW~ 100 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKK-KK-VPLGWVNLPLFDYRGQLRQGPQKLSLWP 100 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT---EE-EEEEEEEEESB-TTSBBEEEEEEEE-EE
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCcccc-ce-eEEEEEEEEeECCCCcccCCCEEEEEEc
Confidence 55555555 89999999998887 468889999999998766543221 13 899999999995 689999999999987
Q ss_pred cCC
Q psy17025 673 EAP 675 (2010)
Q Consensus 673 ~~~ 675 (2010)
...
T Consensus 101 ~~~ 103 (142)
T PF00792_consen 101 DEE 103 (142)
T ss_dssp T-T
T ss_pred CCC
Confidence 643
No 13
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.19 E-value=1.9 Score=52.51 Aligned_cols=133 Identities=19% Similarity=0.105 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccC
Q psy17025 1551 DPEMLLDLMYRIAKGYQ--NSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFIS 1628 (2010)
Q Consensus 1551 DpE~l~dl~~~lA~~Y~--~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~ 1628 (2010)
|.|.-++++-+.|+.|+ +..+--.....+-++.|.+.++..+||.++..+|.+ ..-..+. .+.
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~-~k~~~~~--------~Ai------ 94 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANC-YKKGDPD--------EAI------ 94 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTHH--------HHH------
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhCHH--------HHH------
Confidence 67888899999999994 667777777788899999999999999999875533 2111110 000
Q ss_pred ccchhhcccCCCCCCccccCccCCCccCHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q psy17025 1629 PNCLEECAVSDDVLSPEQEGVCLGKDFTESGFVCLLEHAASSFYTA-GMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKL 1707 (2010)
Q Consensus 1629 pni~~E~~~~~d~~~~~~~g~~~~~~fte~~l~~ll~~ai~~f~kg-~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~l 1707 (2010)
+..+. ++ +-++..-. ....-..+..+++.+++. +.+|.|++.|+..+.+|+....-...+.++.++
T Consensus 95 -~~~~~-A~---------~~y~~~G~--~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 95 -ECYEK-AI---------EIYREAGR--FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp -HHHHH-HH---------HHHHHCT---HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -HHHHH-HH---------HHHHhcCc--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 00000 00 00000000 111234566666666666 677777777777777777654545555555555
Q ss_pred HHHH
Q psy17025 1708 HDAY 1711 (2010)
Q Consensus 1708 a~~y 1711 (2010)
+.+|
T Consensus 162 A~l~ 165 (282)
T PF14938_consen 162 ADLY 165 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 14
>KOG1586|consensus
Probab=87.62 E-value=4.7 Score=47.03 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCc
Q psy17025 1552 PEMLLDLMYRIAKGYQ--NSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISP 1629 (2010)
Q Consensus 1552 pE~l~dl~~~lA~~Y~--~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~p 1629 (2010)
.|.-+||+.+-|+.|+ .+=+.-=.-..+.|+.|.+.|+--+||-|++-++. . |.++.|
T Consensus 30 ~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~----c----------------ykk~~~ 89 (288)
T KOG1586|consen 30 YEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN----C----------------YKKVDP 89 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH----H----------------hhccCh
Confidence 3445666666666663 11111122345788999999988888888884431 1 122211
Q ss_pred cchhhcccCCCCCCccccCccCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHH
Q psy17025 1630 NCLEECAVSDDVLSPEQEGVCLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKS-RDYKKLSNIHSKLH 1708 (2010)
Q Consensus 1630 ni~~E~~~~~d~~~~~~~g~~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~-~dy~kLs~i~~~la 1708 (2010)
+ .-+..|+.||+.|..-|+|-.|..-+..|..+||.. .||.+--..|..-+
T Consensus 90 ~----------------------------eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aa 141 (288)
T KOG1586|consen 90 E----------------------------EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAA 141 (288)
T ss_pred H----------------------------HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 1 133456666666666666666666666666666663 66666555555555
Q ss_pred HHH
Q psy17025 1709 DAY 1711 (2010)
Q Consensus 1709 ~~y 1711 (2010)
+.|
T Consensus 142 e~y 144 (288)
T KOG1586|consen 142 EYY 144 (288)
T ss_pred HHH
Confidence 555
No 15
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=86.46 E-value=2.6 Score=46.96 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=52.0
Q ss_pred CCCCcceeEEEecC-CCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc-CCeeecCcEEeeEeec
Q psy17025 604 KCPYVSDEIKIQLP-PTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK-DGQLQLNDFCLPVTLE 673 (2010)
Q Consensus 604 k~P~f~DEiKI~LP-~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~-~g~l~~ge~~LpV~~~ 673 (2010)
.++.|+|-++..+. -+|....-|-||.|-++..+++. ....+||.+=++|+. +|.|+.|.+.|.+-..
T Consensus 53 ~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k--~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW~~ 122 (158)
T cd08398 53 SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAK--EEHCPLAWGNINLFDYTDTLVSGKMALNLWPV 122 (158)
T ss_pred CCCccceeEEcccchhcCChhheEEEEEEEEecccCCC--CceEEEEEEEEEEECCCChhhCCCEEEEEEcC
Confidence 45789876555433 34777889999999987654222 246799999999995 6899999999998863
No 16
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=83.66 E-value=21 Score=43.52 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHHHhhcc-CChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Q psy17025 1549 QEDPEMLLDLMYRIAKGYQ-NSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAA 1602 (2010)
Q Consensus 1549 ~~DpE~l~dl~~~lA~~Y~-~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~Aa 1602 (2010)
.+|+......+...++.|+ ..|+.-+.++.+-+++..+.|++..||.|+..+|.
T Consensus 68 ~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~ 122 (282)
T PF14938_consen 68 LGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAE 122 (282)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3455556666777788884 67889999999999999999999999999996553
No 17
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=82.47 E-value=4.1 Score=46.12 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=54.0
Q ss_pred cCCCCcceeEEEecC-CCCCCCcEEEEEEEeeecccc----------ccCCCccceEEEEEeeccc-CCeeecCcEEeeE
Q psy17025 603 NKCPYVSDEIKIQLP-PTLEDKHHLLFTFYHISCQKK----------LEQNTVETPVGYTWLPLLK-DGQLQLNDFCLPV 670 (2010)
Q Consensus 603 nk~P~f~DEiKI~LP-~~l~~~hHLLFTFyHvsc~~k----------~~~~~~et~vGyawLPLl~-~g~l~~ge~~LpV 670 (2010)
+..+.|.|.+...++ .+|-...-|-|+.|-++...+ ++....+.+||++=++|+. +|.|+.|.+.|.+
T Consensus 54 ~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~l 133 (173)
T cd08693 54 KNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYM 133 (173)
T ss_pred CCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEe
Confidence 456889987776655 357788899999999876431 1111246899999999995 5899999999998
Q ss_pred eec
Q psy17025 671 TLE 673 (2010)
Q Consensus 671 ~~~ 673 (2010)
-..
T Consensus 134 W~~ 136 (173)
T cd08693 134 WTY 136 (173)
T ss_pred cCC
Confidence 764
No 18
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=81.53 E-value=4.7 Score=45.05 Aligned_cols=68 Identities=24% Similarity=0.262 Sum_probs=53.1
Q ss_pred CCCCcceeEEEecCC---CCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc-CCeeecCcEEeeEeecCCCCCC
Q psy17025 604 KCPYVSDEIKIQLPP---TLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK-DGQLQLNDFCLPVTLEAPPPNY 679 (2010)
Q Consensus 604 k~P~f~DEiKI~LP~---~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~-~g~l~~ge~~LpV~~~~~p~~Y 679 (2010)
..+.|+|- |.+|+ +|.....|-||+|.++... .+.+||.+-+||+. +|.|+.|.+.|.|.....+.+.
T Consensus 58 ~~~~WnEw--l~fpI~i~dLP~~a~L~iti~~~~~~~------~~~~vg~~~~~lFd~~g~Lr~G~~~l~lw~~~~~d~~ 129 (159)
T cd08397 58 NRRNWNEW--LTLPIKYSDLPRNSQLAITIWDVSGTG------KAVPFGGTTLSLFNKDGTLRRGRQKLRVWPDVEADGS 129 (159)
T ss_pred CCccccee--EEcccchhcCChhheEEEEEEEecCCC------CceEEEEEEEeeECCCCcEecCCEEEEEEeCCCCCCc
Confidence 45678775 55664 4777899999999986432 35799999999995 6999999999999987564444
No 19
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=80.86 E-value=5.8 Score=42.30 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=44.8
Q ss_pred EEEEEEeee-cCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc---cCCeeecCcE
Q psy17025 594 EAYTSVIYH-NKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL---KDGQLQLNDF 666 (2010)
Q Consensus 594 ~~~t~V~yH-nk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl---~~g~l~~ge~ 666 (2010)
...|.|... +.+|.|+|++.+.++.. ..+|.|+.|+-.-- .....||.+-+||- ..|...++-+
T Consensus 34 ~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~~------~~dd~iG~~~i~l~~~~~~g~~~~~W~ 101 (121)
T cd04016 34 VYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERAF------TMDERIAWTHITIPESVFNGETLDDWY 101 (121)
T ss_pred EEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCCC------cCCceEEEEEEECchhccCCCCccccE
Confidence 457888876 69999999999998753 35799999873211 12458999999984 3454434333
No 20
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=80.82 E-value=3.2 Score=46.01 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=53.5
Q ss_pred cCCCCcceeEEEecC-CCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc-CCeeecCcEEeeEeecCC
Q psy17025 603 NKCPYVSDEIKIQLP-PTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK-DGQLQLNDFCLPVTLEAP 675 (2010)
Q Consensus 603 nk~P~f~DEiKI~LP-~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~-~g~l~~ge~~LpV~~~~~ 675 (2010)
..++.|+|-|+..++ .+|-....|-||.|.++....+ .+.+||.+=+||+. +|.|..|.+.|.+-....
T Consensus 55 ~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~----~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~~~~ 125 (156)
T cd08380 55 STSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSK----KEVPLGWVNVPLFDYKGKLRQGMITLNLWPGKK 125 (156)
T ss_pred CCCCcccceeEccchhhcCChhheEEEEEEEEecCCCC----cceEEEEEeEEeEcccCcEecCCEEEeccCCcc
Confidence 456889777665444 4588889999999998755421 36899999999995 689999999999986533
No 21
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=78.99 E-value=10 Score=41.27 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=48.9
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccCC
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKDG 659 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~g 659 (2010)
+...|.|.-++.+|.|+|.|...+|..--+..=|.|+.+|..--. .+..+|-..|++...|
T Consensus 53 ~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~------~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 53 SKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMK------RKEMIGWFSLGLNSSG 113 (138)
T ss_pred eeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCC------CCcEEEEEEECCcCCC
Confidence 345788889999999999999999987667778999999965422 2458999999987655
No 22
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=78.87 E-value=7.1 Score=44.12 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=54.5
Q ss_pred CCCCcceeEEEecC-CCCCCCcEEEEEEEeeeccccc--cC-CCccceEEEEEeeccc-CCeeecCcEEeeEeecCCCCC
Q psy17025 604 KCPYVSDEIKIQLP-PTLEDKHHLLFTFYHISCQKKL--EQ-NTVETPVGYTWLPLLK-DGQLQLNDFCLPVTLEAPPPN 678 (2010)
Q Consensus 604 k~P~f~DEiKI~LP-~~l~~~hHLLFTFyHvsc~~k~--~~-~~~et~vGyawLPLl~-~g~l~~ge~~LpV~~~~~p~~ 678 (2010)
.++.|++-|...+. .+|-...-|-||.|-++..... ++ ...+.++|++-+||+. +|.|+.|.+.|.+-....+..
T Consensus 61 ~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW~~~~~~~ 140 (171)
T cd04012 61 PRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLWPPSKDNP 140 (171)
T ss_pred ccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEeccCCccCc
Confidence 56789876655444 3577788999999998765310 00 0256899999999996 499999999999986533333
Q ss_pred C
Q psy17025 679 Y 679 (2010)
Q Consensus 679 Y 679 (2010)
+
T Consensus 141 ~ 141 (171)
T cd04012 141 L 141 (171)
T ss_pred C
Confidence 3
No 23
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=75.96 E-value=10 Score=40.92 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=44.6
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..|.|.-++.+|.|.+++.+.+|..-....+|.|+.|+..... ....||.+.+|+-.
T Consensus 54 ~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~------~~~~iG~~~i~~~~ 110 (136)
T cd08402 54 KKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIG------KNDPIGKVVLGCNA 110 (136)
T ss_pred eeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCC------CCceeEEEEECCcc
Confidence 4577888899999999999999876555679999999854322 23589999999864
No 24
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=75.71 E-value=17 Score=38.81 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=46.0
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccC
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKD 658 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~ 658 (2010)
...|.|...+.+|.|++++.+.+|..-.....|.|+.|+-.... ....+|.+.++|-..
T Consensus 51 ~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~------~~~~lG~~~i~l~~~ 109 (133)
T cd08384 51 KHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGK------SNDYIGGLQLGINAK 109 (133)
T ss_pred CceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCC------CccEEEEEEEecCCC
Confidence 45788999999999999999999865445678999999743221 245899999998643
No 25
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=75.51 E-value=25 Score=40.10 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=50.9
Q ss_pred cCCCCcceeEEEecCC---CCCCCcEEEEEEEeeecccc--c--------cCCCccceEEEEEeeccc-CCeeecCcEEe
Q psy17025 603 NKCPYVSDEIKIQLPP---TLEDKHHLLFTFYHISCQKK--L--------EQNTVETPVGYTWLPLLK-DGQLQLNDFCL 668 (2010)
Q Consensus 603 nk~P~f~DEiKI~LP~---~l~~~hHLLFTFyHvsc~~k--~--------~~~~~et~vGyawLPLl~-~g~l~~ge~~L 668 (2010)
+.+|.|+|- |.+|+ +|.....|-||+|-+.-.+. + .....+.|+|++=++|+. +|.|+.|.+.|
T Consensus 56 ~~~~~WnEw--L~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~~Lr~G~~~L 133 (178)
T cd08399 56 TEEVLWNTW--LEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRFLLRTGEYVL 133 (178)
T ss_pred CCCcccccc--EECccccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcCCCceecCCEEE
Confidence 356889886 55564 47778899999998843221 0 001258999999999995 69999999999
Q ss_pred eEeec
Q psy17025 669 PVTLE 673 (2010)
Q Consensus 669 pV~~~ 673 (2010)
.+-..
T Consensus 134 ~~W~~ 138 (178)
T cd08399 134 HMWQI 138 (178)
T ss_pred EEecC
Confidence 98764
No 26
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=74.59 E-value=7.7 Score=41.52 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=47.8
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
+...|.|..++.+|.|+|.|.+.+|.+--.+..|.|+.+|.. ... ....+|-+-+||-+
T Consensus 52 ~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~--~~~----~~~~lG~~~i~L~~ 110 (124)
T cd08680 52 CLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVG--PDQ----QEECLGGAQISLAD 110 (124)
T ss_pred ceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCC--CCC----ceeEEEEEEEEhhh
Confidence 356788999999999999999999988888899999999953 221 23478888888764
No 27
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=73.16 E-value=12 Score=39.88 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=47.7
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHHhhccccccccchhhHHHHH--HHHHhhcCCCchhHHHHHHHHHHHHHHHHhh
Q psy17025 1394 MKILLHAFSCNQSTAVMQSMFSTQRSLVFKFPNLLFDEETEQCADLC--LQLLKHSSSNLSLIRTNSAASLYLLMRQNFE 1471 (2010)
Q Consensus 1394 f~vll~~L~~nQS~~~l~~~faslR~~i~kF~~~LF~~~~~~c~~l~--~~lL~~c~s~~~~lR~~A~~~Lyllmr~nf~ 1471 (2010)
++.|+.+|........+--...=+..||.-||.- -..+.++- ..|++++++..++||.+|.-.++-||.+||+
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-----r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~w~ 119 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-----RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNNWE 119 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-----HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhH-----HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 3444444544555566666666677788877753 33343333 3677888889999999999999999999985
No 28
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=72.10 E-value=10 Score=39.27 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=40.3
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
+.|.|..++.+|.|.+++-+.+|.. ...+|-|+.||-.-. .....||.+-+||-
T Consensus 34 ~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~------~~~~~iG~~~~~l~ 87 (115)
T cd04040 34 FKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRG------GKDDLLGSAYIDLS 87 (115)
T ss_pred eeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCC------CCCCceEEEEEEHH
Confidence 5677888899999999999998855 567899998874321 12346788877764
No 29
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=70.95 E-value=19 Score=38.33 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=44.4
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|..++.+|.|+|++.+.++..--...-|.|+.||-. .- .....+|-+-+||-.
T Consensus 54 ~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~--~~----~~~~~iG~~~i~L~~ 111 (125)
T cd08393 54 KRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRD--SL----GRNSFLGEVEVDLGS 111 (125)
T ss_pred cccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCC--CC----CCCcEeEEEEEecCc
Confidence 34688999999999999999999865445567999999842 21 124589999999864
No 30
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=70.93 E-value=12 Score=39.75 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=45.3
Q ss_pred ceEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccc-cccCCCccceEEEEEeec
Q psy17025 592 TTEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQK-KLEQNTVETPVGYTWLPL 655 (2010)
Q Consensus 592 ~~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~-k~~~~~~et~vGyawLPL 655 (2010)
..-+.|-|..++.+|.|.||+.|.|| ...=|.|+.|+..++. +.+.......+|=|.+.|
T Consensus 30 ~~~~KTk~i~~TlnPvWnE~F~i~l~----~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~L 90 (118)
T cd08686 30 VKKAKTRVCRDTTEPNWNEEFEIELE----GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQL 90 (118)
T ss_pred ceeeeeeeecCCCCCccceEEEEEeC----CCCEEEEEEEEcccccccccccCcccEEEEEEEEE
Confidence 35678889999999999999999998 3458999999987654 111112456888888887
No 31
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=70.83 E-value=35 Score=33.22 Aligned_cols=57 Identities=18% Similarity=0.263 Sum_probs=42.9
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..+.|.+...+.+|.|.|++.+.++... ..+|-|+.|+..... ....+|...+||..
T Consensus 35 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~------~~~~~G~~~~~l~~ 91 (101)
T smart00239 35 EKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFG------RDDFIGQVTIPLSD 91 (101)
T ss_pred ceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCcc------CCceeEEEEEEHHH
Confidence 4466777777789999999988776554 789999988744321 35689999999653
No 32
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=70.58 E-value=14 Score=38.99 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=44.4
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|..++.+|.|.|++.+.+|..-.....|.|+.|+-.-. .....+|.+.+||-.
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~------~~~~~lG~~~i~l~~ 109 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF------SKHDLIGEVRVPLLT 109 (124)
T ss_pred ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC------CCCceeEEEEEecCc
Confidence 4568888999999999999999986434456899999974321 123589999999965
No 33
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=69.86 E-value=28 Score=33.65 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=44.0
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..+.|.+.....+|.|.+++.+.++.. ...+|.|.+||.+-.. ....+|-+.+++-.
T Consensus 32 ~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~------~~~~ig~~~~~l~~ 88 (102)
T cd00030 32 QKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFS------KDDFLGEVEIPLSE 88 (102)
T ss_pred ceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCC------CCceeEEEEEeHHH
Confidence 445666777779999999999999976 6778999999854321 25689999998865
No 34
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=69.78 E-value=5.7 Score=42.90 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=44.9
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccC
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKD 658 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~ 658 (2010)
.-|.|..++.+|.|.|++.+.+|..-.....|.|+.|+-+... ....||...|..+..
T Consensus 53 ~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~------~~~~iG~~~l~~~~~ 110 (135)
T cd08410 53 KKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKS------SNDFIGRIVIGQYSS 110 (135)
T ss_pred EcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCC------CCcEEEEEEEcCccC
Confidence 5577888899999999999999876555668999999854322 235899998877653
No 35
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=69.75 E-value=17 Score=38.72 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=43.0
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCC-CCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPT-LEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~-l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|...+.||.|+|++...+|.. .-+.-.|.|+.|+-..-.+ ...||-+-|||-.
T Consensus 39 k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~------dd~IG~~~l~l~~ 97 (120)
T cd08395 39 KFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARD------DRLVGVTVLQLRD 97 (120)
T ss_pred EeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCC------CCEEEEEEEEHHH
Confidence 45677777678999999999999965 4455679999987543221 2379999999763
No 36
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=68.50 E-value=13 Score=41.47 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=44.4
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCC------CCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPT------LEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~------l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..+.|.|..++.||.|+|++++.++.. ..+++.|-|+.||-.---++ ...+|-+.+||-.
T Consensus 41 ~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~-----D~~iG~~~i~L~~ 106 (155)
T cd08690 41 QSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRS-----DKLLGTAQVKLEP 106 (155)
T ss_pred ceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccC-----CCeeEEEEEEccc
Confidence 457899999999999999999999876 45578899999985321111 2366666666643
No 37
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=68.38 E-value=9.6 Score=40.66 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=44.9
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|.-++.+|.|+|++.+.+|..--..+.|.|+.||-+-.. ....+|-+-+||-.
T Consensus 54 ~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~------~~~~lG~~~i~l~~ 111 (125)
T cd04029 54 KRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFG------RNTFLGEVEIPLDS 111 (125)
T ss_pred ceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCC------CCcEEEEEEEeCCc
Confidence 35688888889999999999999876556778999999843211 23578998888853
No 38
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=68.29 E-value=13 Score=39.53 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=43.4
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCC---CCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTL---EDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l---~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|..++.+|.|+|++-..+|... .....|-|+.||-.--. ....+|.+.+||-.
T Consensus 32 ~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~------~d~~iG~~~i~l~~ 92 (126)
T cd08682 32 KYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG------LDKFLGQVSIPLND 92 (126)
T ss_pred eeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC------CCceeEEEEEEHHH
Confidence 457889999999999999988888742 24567999999853211 13479999999853
No 39
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=68.01 E-value=7.3 Score=40.48 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=36.4
Q ss_pred eecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 601 YHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 601 yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...+||.|+|||.|.+ ...+-+-+++|.. ++ ..-.|||.-|++|-.
T Consensus 40 r~srnd~WnE~F~i~V----dk~nEiel~VyDk-----~~--~~~~Pi~llW~~~sd 85 (109)
T cd08689 40 KPSRNDRWNEDFEIPV----EKNNEEEVIVYDK-----GG--DQPVPVGLLWLRLSD 85 (109)
T ss_pred cCCCCCcccceEEEEe----cCCcEEEEEEEeC-----CC--CeecceeeehhhHHH
Confidence 3459999999999887 2578899999973 22 356799999999864
No 40
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=67.30 E-value=27 Score=37.48 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=43.9
Q ss_pred EEEEEeeecCCCCcceeEEE-ecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccC
Q psy17025 595 AYTSVIYHNKCPYVSDEIKI-QLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKD 658 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI-~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~ 658 (2010)
..|.|..++.+|.|+|++.+ .+|..-.....|.|+.||..- . .....+|-+.+||-.-
T Consensus 54 ~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~--~----~~d~~lG~~~i~L~~l 112 (128)
T cd08388 54 VKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR--Y----SRDDVIGEVVCPLAGA 112 (128)
T ss_pred eeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC--C----CCCceeEEEEEecccc
Confidence 46888889999999999999 677554445679999988532 1 1345899999999753
No 41
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=66.72 E-value=1.6e+02 Score=36.73 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhcCCCcH--HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Q psy17025 1368 TILNTLELIVQVVQQ--CDHLHGLLGSVMKILLHAFSCNQST--AVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQL 1443 (2010)
Q Consensus 1368 iVLD~le~~~~~l~~--~d~~~~ll~~vf~vll~~L~~nQS~--~~l~~~faslR~~i~kF~~~LF~~~~~~c~~l~~~l 1443 (2010)
-||+++..++..+.. .+.-..++..||.--+.+...+..+ .....+|.-+++++..++..++.-.++.+..+...+
T Consensus 91 evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi 170 (319)
T PF08767_consen 91 EVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSI 170 (319)
T ss_dssp HHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH
Confidence 357777777777653 2344678999999999998776653 667889999999999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHHHhh
Q psy17025 1444 LKHSSSNLSLIRTNSAASLYLLMRQNFE 1471 (2010)
Q Consensus 1444 L~~c~s~~~~lR~~A~~~Lyllmr~nf~ 1471 (2010)
+--+.+...++-..+..+|..|+.+-..
T Consensus 171 ~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 171 VWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988776
No 42
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=65.89 E-value=7.7 Score=41.78 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=45.6
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccC
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKD 658 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~ 658 (2010)
...|.|..++.+|.|++++.+.+|..-.....|.|+.++..-.. ....+|.+.+|+-..
T Consensus 53 ~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~------~~~~lG~~~i~~~~~ 111 (136)
T cd08405 53 KKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLS------RNDLIGKIYLGWKSG 111 (136)
T ss_pred cccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCC------CCcEeEEEEECCccC
Confidence 34677888999999999999999865445678999999854211 235899999998764
No 43
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=65.78 E-value=7.8 Score=41.24 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=45.6
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|...+.+|.|.|++.+.++..-.+..+|.|+.||..-. + .+..+|.+-+||-.
T Consensus 52 ~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~-~-----~~~~lG~~~i~l~~ 109 (134)
T cd00276 52 KKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV-G-----RNEVIGQVVLGPDS 109 (134)
T ss_pred eecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCC-C-----CCceeEEEEECCCC
Confidence 4567777888999999999999987655678999999985422 1 34689999999866
No 44
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=65.70 E-value=8.6 Score=41.30 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=43.9
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..|.|.-.+.+|.|.+++.+.+|..-.....|.|+.|+-.... ....||...+|+..
T Consensus 53 ~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~------~~~~IG~~~l~~~~ 109 (134)
T cd08403 53 KKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVG------HNELIGVCRVGPNA 109 (134)
T ss_pred ecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCC------CCceeEEEEECCCC
Confidence 4566766789999999999999876556678999999843221 24589999999874
No 45
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=65.17 E-value=16 Score=38.31 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=42.6
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..+.|.|..++.+|.|.+++.+.++ ....+|.|+.|+-.-. .....+|.+.+||-.
T Consensus 37 ~~~kT~~~~~~~~P~Wne~~~~~v~---~~~~~l~~~v~d~~~~------~~d~~iG~~~~~l~~ 92 (124)
T cd04044 37 ELARTKVKKDTSNPVWNETKYILVN---SLTEPLNLTVYDFNDK------RKDKLIGTAEFDLSS 92 (124)
T ss_pred cceEeeeecCCCCCcceEEEEEEeC---CCCCEEEEEEEecCCC------CCCceeEEEEEEHHH
Confidence 3467788888999999999999887 3466899998874311 124689999999753
No 46
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=64.75 E-value=15 Score=39.01 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=42.5
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|...+.+|.|.|++.+.++. ..+|.|+.|+-.-..+. ....+|.+-+||-.
T Consensus 34 ~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~~~----~d~~lG~~~i~l~~ 89 (123)
T cd08382 34 THSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFKKK----DQGFLGCVRIRANA 89 (123)
T ss_pred ceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCCCC----CCceEeEEEEEHHH
Confidence 4567888889999999999999875 57999999984322111 13589999998864
No 47
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=64.27 E-value=20 Score=39.53 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=45.0
Q ss_pred ceEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 592 TTEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 592 ~~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
+..|.|.|.-.+.+|.|.|||.+. .++.-.+|-|+.|+.+=..++. .....||..-+|+-.
T Consensus 38 ~~vaRT~v~~~~~nP~W~E~F~f~---~~~~~~~l~v~v~k~~~~~~~~--~~~~~IG~V~Ip~~~ 98 (146)
T cd04013 38 TLYARTTSKLKTDTLFWGEHFEFS---NLPPVSVITVNLYRESDKKKKK--DKSQLIGTVNIPVTD 98 (146)
T ss_pred EEEEEEEEEcCCCCCcceeeEEec---CCCcccEEEEEEEEccCccccc--cCCcEEEEEEEEHHH
Confidence 456789999889999999999995 3444578999998754332211 245799999999754
No 48
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=64.21 E-value=11 Score=40.52 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=44.5
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCC--CCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPT--LEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~--l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|..++.+|.|.|++.+.++.. .....+|.|+.|+-.--. ....+|.+.+||-.
T Consensus 55 ~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~------~d~~iG~~~i~l~~ 115 (133)
T cd04009 55 PTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLG------SNDFEGEAFLPLND 115 (133)
T ss_pred cccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCC------CCcEeEEEEEeHHH
Confidence 456788899999999999999998863 235678999998853221 23579999999853
No 49
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=63.98 E-value=13 Score=39.93 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=41.9
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
.+.|.|..++.+|.|+++|.+.+ ..+.....|.|+.|+-.-.. ....||.+.+||-
T Consensus 60 ~~kT~vi~~t~nPvWNE~F~f~~-~~~~~~~~L~v~V~D~d~~s------~dd~IG~~~i~l~ 115 (127)
T cd04032 60 EKRTEVIWNNNNPRWNATFDFGS-VELSPGGKLRFEVWDRDNGW------DDDLLGTCSVVPE 115 (127)
T ss_pred cccCceecCCCCCcCCCEEEEec-ccCCCCCEEEEEEEeCCCCC------CCCeeEEEEEEec
Confidence 45678888999999999998863 23346779999998843321 2358999999986
No 50
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=62.45 E-value=9.4 Score=41.17 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=45.8
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|.-++.+|.|.|++.+.+|..-.+..+|.|+.|+-.- . .....||.+.+++..
T Consensus 53 ~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~--~----~~~~~iG~~~~~~~~ 110 (136)
T cd08404 53 KKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR--V----TKNEVIGRLVLGPKA 110 (136)
T ss_pred eEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC--C----CCCccEEEEEECCcC
Confidence 456778888999999999999999766678899999998422 1 123589999999875
No 51
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=61.96 E-value=13 Score=39.12 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=45.1
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..|.|..++.+|.|.+++.+.+|..-...+.|.|+.||-. .. .....+|.+-+||-.
T Consensus 52 ~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~--~~----~~~~~iG~~~i~L~~ 108 (123)
T cd08390 52 LQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD--RF----SRHCIIGHVLFPLKD 108 (123)
T ss_pred eEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC--cC----CCCcEEEEEEEeccc
Confidence 4688999999999999999999976666789999999833 11 124689999999853
No 52
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=61.47 E-value=19 Score=38.28 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=42.6
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
+.|.|...+.+|.|.+++.+.++.......+|.|+.|+-.-.. ....+|.+-+||-
T Consensus 28 ~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------~d~~iG~~~~~l~ 83 (127)
T cd08373 28 KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------RNRLIGSATVSLQ 83 (127)
T ss_pred eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------CCceEEEEEEEhh
Confidence 5788888889999999999999765567889999999853211 2246777777763
No 53
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=61.26 E-value=22 Score=37.54 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=40.7
Q ss_pred EEEEEeee-cCCCCcceeEEEecCCCC--CCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYH-NKCPYVSDEIKIQLPPTL--EDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yH-nk~P~f~DEiKI~LP~~l--~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..|.|..+ +.+|.|.|++.+.+|... ....+|.|+.|+- +.. .....+|.+.+||-.
T Consensus 35 ~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~--~~~----~~~~~lG~~~i~l~~ 94 (125)
T cd04051 35 QSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE--RPS----LGDKLIGEVRVPLKD 94 (125)
T ss_pred cccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC--CCC----CCCCcEEEEEEEHHH
Confidence 34555544 589999999999998653 3467899999872 221 124589999999964
No 54
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=59.24 E-value=23 Score=39.03 Aligned_cols=55 Identities=18% Similarity=0.258 Sum_probs=42.6
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
..+.|.|..++.+|.|.+++.+.+|.. ..+|-|+.|+-.-- .....+|.+-++|-
T Consensus 33 ~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~~------~~dd~iG~a~i~l~ 87 (145)
T cd04038 33 QKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDTF------SKDDSMGEAEIDLE 87 (145)
T ss_pred EEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCCC------CCCCEEEEEEEEHH
Confidence 356788999999999999999999854 56899999984321 12358999998764
No 55
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=58.41 E-value=15 Score=39.43 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=45.1
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
...|.|.-++.+|.|+|++...+|..--+.+-|-|+.+|.. .- .....+|-+-+||-
T Consensus 54 k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~--~~----~~~~~lG~~~i~L~ 110 (128)
T cd08392 54 KRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSR--TL----KRRVFLGEVLIPLA 110 (128)
T ss_pred eeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCC--CC----cCcceEEEEEEEcC
Confidence 45788999999999999999999886666788999999843 21 12458999999984
No 56
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=56.90 E-value=24 Score=37.08 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=41.1
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|...+.+|.|++++.+.++- ...+|.|+.|+-.-.. ....+|.+-+||-.
T Consensus 34 ~~kT~~~~~t~nP~Wne~f~f~v~~---~~~~l~~~v~D~d~~~------~~~~iG~~~~~l~~ 88 (121)
T cd04042 34 VYKSKTIYKNLNPVWDEKFTLPIED---VTQPLYIKVFDYDRGL------TDDFMGSAFVDLST 88 (121)
T ss_pred EEEeeeccCCCCCccceeEEEEecC---CCCeEEEEEEeCCCCC------CCcceEEEEEEHHH
Confidence 4577788889999999999998762 2468999999742211 23588999998853
No 57
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=56.73 E-value=21 Score=37.53 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=45.4
Q ss_pred ceEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 592 TTEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 592 ~~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...+.|.|...+.+|.|.+++.+.++. ....+|.|++|+..-..+.- .....+|.+-+||-.
T Consensus 38 ~~~~kT~vi~~t~nP~wne~f~f~~~~--~~~~~l~~~V~d~d~~~~~~--~~~d~iG~~~i~l~~ 99 (120)
T cd04048 38 VEIGRTEVIKNNLNPDFVTTFTVDYYF--EEVQKLRFEVYDVDSKSKDL--SDHDFLGEAECTLGE 99 (120)
T ss_pred EEeccEeEeCCCCCCCceEEEEEEEEe--EeeeEEEEEEEEecCCcCCC--CCCcEEEEEEEEHHH
Confidence 456789999999999999999988654 34458999999865421001 234689999999864
No 58
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=56.31 E-value=25 Score=36.52 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=42.4
Q ss_pred EEEEEeeecCCCCcceeEEEecCC-CCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPP-TLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~-~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
+.|.|..++.+|.|.+++.+.++. ++....+|-|+.|+-.--. ....+|.+-+||-
T Consensus 39 ~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~------~dd~lG~~~i~l~ 95 (111)
T cd04041 39 YSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFT------ADDRLGRVEIDLK 95 (111)
T ss_pred EeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCC------CCCcceEEEEEHH
Confidence 578899999999999999987653 4556678999999753211 2357899988874
No 59
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=54.93 E-value=27 Score=36.85 Aligned_cols=55 Identities=22% Similarity=0.227 Sum_probs=41.7
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
.+.|.|...+.+|.|.+++.+.++.. ...+|.|+.|+-.-. .....+|-+-++|-
T Consensus 37 ~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~------~~~~~iG~~~i~l~ 91 (126)
T cd04043 37 IAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFV------GKHDLCGRASLKLD 91 (126)
T ss_pred eecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCC------CCCceEEEEEEecC
Confidence 35788888899999999999998875 456899998874321 12457888888863
No 60
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=54.59 E-value=34 Score=36.30 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=42.2
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|...+.+|.|.|++.+.++. ....|.|+.|+-.-.. ....+|.+-+||-.
T Consensus 32 ~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~~~v~d~~~~~------~~~~lG~~~i~l~~ 86 (126)
T cd08678 32 KYQSSTQKNTSNPFWDEHFLFELSP---NSKELLFEVYDNGKKS------DSKFLGLAIVPFDE 86 (126)
T ss_pred EEEeEEEecCCCCccCceEEEEeCC---CCCEEEEEEEECCCCC------CCceEEEEEEeHHH
Confidence 4688899999999999999998863 3567999999753221 24588999999854
No 61
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=54.15 E-value=68 Score=34.81 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=44.1
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeec
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPL 655 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPL 655 (2010)
....|.|.-++.+|.|+|.|...+|..--+..-|.|+.+|.+-.. .+..||-.-++.
T Consensus 51 ~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~------~~~~lG~v~ig~ 107 (137)
T cd08409 51 KTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVR------KSKLLGRVVLGP 107 (137)
T ss_pred eeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCC------CcceEEEEEECC
Confidence 344688888999999999999999976666688999999864322 234788888874
No 62
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=53.53 E-value=36 Score=35.42 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=41.6
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|..++.+|.|.|++-+.+.... ...-|.|+.|+-+-.. ....||-+-+||-.
T Consensus 38 ~~kT~v~~~t~nPvWne~f~f~v~~~~-~~~~L~~~V~D~d~~~------~dd~IG~~~l~L~~ 94 (108)
T cd04039 38 VFRTSWRRHTLNPVFNERLAFEVYPHE-KNFDIQFKVLDKDKFS------FNDYVATGSLSVQE 94 (108)
T ss_pred eEeeeeecCCCCCcccceEEEEEeCcc-CCCEEEEEEEECCCCC------CCcceEEEEEEHHH
Confidence 457899999999999999988775332 2346889888743221 24589999999854
No 63
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=53.05 E-value=17 Score=38.35 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=45.5
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..+.|.|..++.+|.|.|++.+.++..--...+|.|+.++-.-... .....+|.+-+||-+
T Consensus 53 ~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~----~~~~~iG~~~i~l~~ 113 (127)
T cd04030 53 TRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLS----REKKLLGQVLIDLSD 113 (127)
T ss_pred ceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccC----CCCceEEEEEEeccc
Confidence 4567889999999999999999998654456789998887432100 124589999999864
No 64
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=52.48 E-value=29 Score=35.92 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=44.1
Q ss_pred eEEEEEEeeecCCCCc-ceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYV-SDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f-~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..+.|.|...+.+|.| .|++.+.+|......-+|-|+.|+-.-.. ....+|.+.+||-.
T Consensus 32 ~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~------~~~~iG~~~~~l~~ 91 (110)
T cd08688 32 TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS------ANDAIGKVYIDLNP 91 (110)
T ss_pred eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC------CCCceEEEEEeHHH
Confidence 4567888888999999 99999999876444458999999843211 23578999888753
No 65
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=52.46 E-value=33 Score=36.61 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=42.4
Q ss_pred ceEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 592 TTEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 592 ~~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+...|.|...+.+|.|++++.+.++.. ..+|.|+.|+-.-- .....+|.+.+||-.
T Consensus 38 ~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~------~~~~~iG~~~i~l~~ 94 (133)
T cd04033 38 IDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDENRL------TRDDFLGQVEVPLNN 94 (133)
T ss_pred ccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECCCC------CCCCeeEEEEEEHHH
Confidence 3456788888899999999999988753 46899988863211 124589999999753
No 66
>KOG2758|consensus
Probab=52.41 E-value=79 Score=38.81 Aligned_cols=42 Identities=29% Similarity=0.313 Sum_probs=35.3
Q ss_pred HHhhccCChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Q psy17025 1562 IAKGYQNSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALV 1604 (2010)
Q Consensus 1562 lA~~Y~~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLi 1604 (2010)
+...|.=.|| ++.-|++.|+.+.++|||.+|+-|+-|.-+++
T Consensus 118 L~e~ynf~~e-~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~ 159 (432)
T KOG2758|consen 118 LQEHYNFTPE-RIETLYKYAKFQYECGNYSGASDYLYFYRALV 159 (432)
T ss_pred HHHhcCCCHH-HHHHHHHHHHHHHhccCcccHHHHHHHHHHhc
Confidence 5667766776 68889999999999999999999999776554
No 67
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=50.89 E-value=31 Score=36.15 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=40.4
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
...|.|...+.+|.|++++.+.++.. ....|-|+.|+-.- . ....+|.+-+||-
T Consensus 36 ~~kT~vv~~t~nP~Wne~f~f~i~~~--~~~~l~v~v~d~d~--~-----~~~~iG~~~~~l~ 89 (119)
T cd04036 36 KKRTKTIKNSINPVWNETFEFRIQSQ--VKNVLELTVMDEDY--V-----MDDHLGTVLFDVS 89 (119)
T ss_pred cCccceecCCCCCccceEEEEEeCcc--cCCEEEEEEEECCC--C-----CCcccEEEEEEHH
Confidence 35678888899999999999988765 34578999998322 1 1347888888885
No 68
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=50.86 E-value=43 Score=34.78 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=41.3
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
.+.|.|..++.+|.|++++.+.++.. ...+|-|+.|+-.-. .....+|.+-++|-
T Consensus 33 ~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~~------~~~~~iG~~~~~l~ 87 (116)
T cd08376 33 KYKSKVCSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDTG------KKDEFIGRCEIDLS 87 (116)
T ss_pred eEecccccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCCC------CCCCeEEEEEEeHH
Confidence 45678888999999999999988743 356899998874211 12458999999984
No 69
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=50.85 E-value=27 Score=37.23 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=47.9
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...-|.|...+.||.|+|.+...+|.+--++-.|.|+.||-.--.+ -.+||-.-|||-.
T Consensus 47 ~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~------~d~IG~v~l~l~~ 105 (118)
T cd08677 47 KEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSR------HSTLGELRLKLAD 105 (118)
T ss_pred cEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCC------CceEEEEEEcccc
Confidence 3557999999999999999999999998888999999998432222 2478988888853
No 70
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=48.38 E-value=23 Score=37.64 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=44.6
Q ss_pred eEEEEEEeeecCCCCcceeEEEec-CCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQL-PPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~L-P~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|.-++.+|.|.|+|...+ |...-...-|.|+.+|-. ... ....+|-..+||-.
T Consensus 49 ~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d--~~~----~~~~lG~~~i~l~~ 108 (122)
T cd08381 49 TKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD--SLV----ENEFLGGVCIPLKK 108 (122)
T ss_pred CceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC--CCc----CCcEEEEEEEeccc
Confidence 446788888999999999999998 866556678999999742 211 23478988888853
No 71
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=48.25 E-value=37 Score=36.86 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=42.0
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|..++.+|.|.+++-+.++. ....+|.|+.|+-.-. .....+|.+.+||-.
T Consensus 48 ~~kT~vi~~t~nP~Wne~f~f~v~~--~~~~~l~i~V~D~d~~------~~d~~lG~~~i~l~~ 103 (136)
T cd08375 48 EHKTKVVSDTLNPKWNSSMQFFVKD--LEQDVLCITVFDRDFF------SPDDFLGRTEIRVAD 103 (136)
T ss_pred eeeccccCCCCCCccCceEEEEecC--ccCCEEEEEEEECCCC------CCCCeeEEEEEEHHH
Confidence 4678899999999999999888753 2356899999874211 123589999999853
No 72
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=47.99 E-value=36 Score=35.87 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=42.4
Q ss_pred EEEEEEeeecCCCCcceeEEEe-cCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQ-LPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~-LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
.+.|.|..++.+|.|.+++.+. ++..-....+|-|+.|+-... ....+|.+.+||-
T Consensus 53 ~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-------~~~~iG~~~i~l~ 109 (123)
T cd04035 53 KLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-------GNDFLGETRIPLK 109 (123)
T ss_pred ceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-------CCeeEEEEEEEcc
Confidence 4678888899999999999984 554434456899999875322 1358999999985
No 73
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=47.68 E-value=45 Score=35.49 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=40.8
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
.+.|.|..++.+|.|.+++.+.++ +..+|-|+.|+-.-. .....+|.+-+||-
T Consensus 35 ~~kT~v~~~t~~P~Wne~f~~~~~----~~~~l~~~V~d~~~~------~~~~~iG~~~i~l~ 87 (125)
T cd04021 35 PKKTEVSKKTSNPKWNEHFTVLVT----PQSTLEFKVWSHHTL------KADVLLGEASLDLS 87 (125)
T ss_pred cEEeeeeCCCCCCccccEEEEEeC----CCCEEEEEEEeCCCC------CCCcEEEEEEEEHH
Confidence 357788888999999999998875 457899998874221 13468999999974
No 74
>KOG1998|consensus
Probab=47.22 E-value=0.44 Score=67.42 Aligned_cols=231 Identities=6% Similarity=-0.191 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHHHHhcCCccccceEEEEEecccCC-CCCCceEEecCCCCCChHHHHH
Q psy17025 1682 NVYKVIFPIVEK-SRDYKKLSNIHSKLHDAYVKLYQIQGKRVFGTYFRVGFYGMKFG-DLNNEEFIYKEPTLTKLPEIFS 1759 (2010)
Q Consensus 1682 ~l~k~Lip~yE~-~~dy~kLs~i~~~la~~y~~I~~~~~~R~~~~YfRV~FyG~~F~-~l~~kefIYre~~~t~L~ef~~ 1759 (2010)
-+++++.-.++- .+++..++++...... |+-+.-. =+. ..|+++.|+|-..+ -...++|.|+..+..+|.-++.
T Consensus 1016 fv~~vl~~L~~~~d~~~~~~~E~~d~~~~-~tv~L~~--~y~-e~nr~Emy~ryiykL~dlh~q~~n~~eAa~tL~l~a~ 1091 (1548)
T KOG1998|consen 1016 FVRSVLRLLERLLDYRSIMNGEEKDNKMS-CTVNLLN--FYK-EINREEMYIRYIYKLCDLHLQAENYTEAAFTLLLHAG 1091 (1548)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhH-HHHHHHH--hcc-hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 677777777775 5788888888877777 5544432 133 67889999998777 4567889999888777777777
Q ss_pred HHHHHHHhhhCCccEEEcccCCccCCCCCCCCccEEEEEEeeeccCCc-cc--------ccccccceeecccCcEEEeee
Q psy17025 1760 RLENFYAERFGVNNIMIIKDSNPVDTMSLDPDIAYIQITYVEPYFENY-EK--------RYRETHFEQNFNIKTFMYATP 1830 (2010)
Q Consensus 1760 rL~~~y~~~~G~~~v~ii~ds~~vd~~~ld~~~~yIQIt~V~P~~~~~-e~--------~~r~t~f~r~~ni~~F~f~tP 1830 (2010)
+|+--.+. .. ..+++......-.++.|+..+-|....+ .. ++-..+|+ +.+-.|.+-.+
T Consensus 1092 ~L~wd~~~------~~----~~~~~~~~q~~~q~KE~L~~e~~~~F~kGk~wE~ai~l~keL~~~Ye--n~~~Dy~~Ls~ 1159 (1548)
T KOG1998|consen 1092 LLKWDDDD------LL----IQFLPYPEQTHRQRKEYLYEEIIHYFDKGKMWEKAIALCKELAEQYE--NIIFDYNKLSE 1159 (1548)
T ss_pred hhhcCCch------hc----ccCCCCcccccHHHHHHHHHHhhhccccccChhhhchHHHHHHHHHH--HHHhhHHHhHH
Confidence 77654332 11 1233333333444566666666543332 11 01122222 11223333333
Q ss_pred eecCC-CCCCccccceEEEEEEEeCcCCCCceeEEEEecceeEEeCHHHHHHHHHHHHHHHHHHHHh--cCCCCh-hhHH
Q psy17025 1831 FTTTG-KAHGELHEQYKRKTILTTATHFPYVKTRIQVVDRKQIILTPIEVAIEDIQKKTQELSNSIR--QEPPDP-KILQ 1906 (2010)
Q Consensus 1831 ft~~g-k~~g~~~eq~krrTiltt~~~FP~i~~R~~Vv~~~~~~lsPIE~AIe~i~~K~~eL~~~~~--~~~~d~-~~Lq 1906 (2010)
..+.- +-..++..+|..+++|--...+|...++..+-++-..+..|.|.+.+.+++--.|+-+.+. +.+||. .+-.
T Consensus 1160 ~~~~~A~~y~~i~~~~R~~p~yf~V~fyG~gfP~~lrnk~fv~rg~~~E~~~~f~~rl~~e~~a~~~~~~~~p~~~i~ns 1239 (1548)
T KOG1998|consen 1160 LLIQIAQFYTNIMKILRPEPEYFRVGFYGQGFPKFLRNKVFVYRGLEYERIEAFQQRLLTEFPAEIMHTTSPPDDAILNS 1239 (1548)
T ss_pred HHHHHHHHHHHHHHhhcccccEEEEeccccCcchhhcCceEEEeCchHHHHHHHHHHHHHhCchhhhcCCCCCcccccCC
Confidence 32211 1145789999999999999999999999999999999999999999999988888883322 344444 4444
Q ss_pred HhhcceeccccccchHHHHHhcc
Q psy17025 1907 MVLQGCIGTTVNQGPMEMAVVFL 1929 (2010)
Q Consensus 1907 ~~LqGsV~a~VNgGp~~ya~~FL 1929 (2010)
+- ||+.++.|.+|...+++++.
T Consensus 1240 p~-qyi~~~~V~p~~~~~~~~~~ 1261 (1548)
T KOG1998|consen 1240 PG-QYIQVFSVEPVLDISPNFNN 1261 (1548)
T ss_pred Cc-ceeEEeeeccccccchhhcC
Confidence 45 99999999999999988776
No 75
>KOG2003|consensus
Probab=47.12 E-value=1.2e+02 Score=38.48 Aligned_cols=68 Identities=25% Similarity=0.445 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhhHh-------hhhhcCCHHHHHHHHHHHHhhc-cCChhHHHHHHHHHHHHHHHcCChhhhHHHH
Q psy17025 1526 EQVKDLVFNLHMILSDTVK-------MKEFQEDPEMLLDLMYRIAKGY-QNSPNLRLTWLANMAQKHMERNNHTEAGMCL 1597 (2010)
Q Consensus 1526 ~~v~~L~~~L~~il~dt~~-------m~e~~~DpE~l~dl~~~lA~~Y-~~~PdLrl~wL~~La~~H~~~~n~~EAa~cl 1597 (2010)
++..+..-.||.||.+.++ +-|..+||-..++++.+ |++. -+.|. .|.+|+++.-+.|+...|-+|+
T Consensus 541 deald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q-~~slip~dp~----ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 541 DEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ-ANSLIPNDPA----ILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH-hcccCCCCHH----HHHHHHHHhhcccchhhhhhhh
Confidence 3444444467777665443 34566777776776544 3444 35564 3788999999999999999998
Q ss_pred H
Q psy17025 1598 V 1598 (2010)
Q Consensus 1598 ~ 1598 (2010)
-
T Consensus 616 y 616 (840)
T KOG2003|consen 616 Y 616 (840)
T ss_pred h
Confidence 6
No 76
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=46.93 E-value=40 Score=35.06 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=40.3
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
+.|.|..++.+|.|.+++.+.++. ...+|-|+.|+-.-. .....+|.+.+||-+
T Consensus 35 ~~T~~~~~t~nP~W~e~f~~~~~~---~~~~l~~~v~d~~~~------~~~~~iG~~~~~l~~ 88 (119)
T cd08377 35 LQTHTIYKTLNPEWNKIFTFPIKD---IHDVLEVTVYDEDKD------KKPEFLGKVAIPLLS 88 (119)
T ss_pred eecceecCCcCCccCcEEEEEecC---cCCEEEEEEEECCCC------CCCceeeEEEEEHHH
Confidence 467788889999999999998863 256888888763211 124589999999864
No 77
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=45.32 E-value=1.1e+02 Score=32.48 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=39.9
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..|.+...+.+|.|++++-+.+ .......|-|+.++-.-- .....+|.+.+||-.
T Consensus 36 ~kT~~v~~t~nP~Wne~f~f~~--~~~~~~~L~~~V~d~d~~------~~dd~iG~~~i~l~~ 90 (124)
T cd04037 36 DRDNYIPNTLNPVFGKMFELEA--TLPGNSILKISVMDYDLL------GSDDLIGETVIDLED 90 (124)
T ss_pred ceeeEEECCCCCccceEEEEEe--cCCCCCEEEEEEEECCCC------CCCceeEEEEEeecc
Confidence 3566777899999999988764 334567899999984321 123589999999853
No 78
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=44.72 E-value=83 Score=33.39 Aligned_cols=58 Identities=9% Similarity=0.021 Sum_probs=40.7
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCC-CCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTL-EDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l-~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
...|.|..++.+|.|++++.+.++-.- .....|-|+.||..-..+ ....+|-..+||-
T Consensus 33 ~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~-----~d~~lG~v~i~l~ 91 (127)
T cd04022 33 KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR-----RRSFLGRVRISGT 91 (127)
T ss_pred EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC-----CCCeeeEEEEcHH
Confidence 456888888999999999999987432 234689999998432110 2346777777774
No 79
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=43.91 E-value=45 Score=35.08 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=43.5
Q ss_pred EEEEEEeeecC-CCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccCCeeecCcEEeeEe
Q psy17025 594 EAYTSVIYHNK-CPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKDGQLQLNDFCLPVT 671 (2010)
Q Consensus 594 ~~~t~V~yHnk-~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~g~l~~ge~~LpV~ 671 (2010)
...|.+..++- +|.|.|++.+.++.. +...|.|+.|+-.- . ....+|.+.+||-. +..|...+++.
T Consensus 43 ~~kT~~~~~~~~~P~w~e~f~f~~~~~--~~~~l~~~V~d~~~--~-----~~~~iG~~~~~l~~---l~~g~~~~~l~ 109 (128)
T cd00275 43 KFKTKVVKNNGFNPVWNETFEFDVTVP--ELAFLRFVVYDEDS--G-----DDDFLGQACLPLDS---LRQGYRHVPLL 109 (128)
T ss_pred cEeeeeecCCCcCCccCCcEEEEEeCC--CeEEEEEEEEeCCC--C-----CCcEeEEEEEEhHH---hcCceEEEEec
Confidence 34566767775 999999999988732 23478888887432 1 23579999999853 33444444443
No 80
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=43.83 E-value=35 Score=35.99 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=43.7
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..|.|..++.+|.|.|++-+.+|..-....+|.|+.++-. .. .....+|.+-+||-.
T Consensus 53 ~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~--~~----~~~~~iG~~~i~l~~ 109 (124)
T cd08387 53 KQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD--QF----SRDECIGVVELPLAE 109 (124)
T ss_pred EeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC--CC----CCCceeEEEEEeccc
Confidence 4678888999999999999999876556678999998742 11 123578888888864
No 81
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=43.70 E-value=36 Score=37.66 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=41.4
Q ss_pred EEEEEeeecCCCCcceeEEEecC-------------CCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLP-------------PTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP-------------~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..|.|..++.+|.|+|+|...++ ..-.+...|.|+.+|-.-- + ....+|-+-+||-.
T Consensus 37 ~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~-~-----~ddfLG~v~i~l~~ 106 (148)
T cd04010 37 KRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMG-G-----GDVFLGEVRIPLRG 106 (148)
T ss_pred cCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCC-C-----CCceeEEEEEeccc
Confidence 45788899999999999999985 2233446788888874321 1 23589999999864
No 82
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=43.38 E-value=29 Score=37.81 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=45.6
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccCC
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKDG 659 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~g 659 (2010)
..|.|..++.+|.|+|++-..+|..--+.-.|.|+.||-.--. ....+|-..|+....|
T Consensus 54 ~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~------~~~~iG~v~lg~~~~g 112 (136)
T cd08406 54 KKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDG------KTPNVGHVIIGPAASG 112 (136)
T ss_pred cCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCC------CCCeeEEEEECCCCCC
Confidence 3577888999999999999999987777889999999853211 2347888888776544
No 83
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=42.53 E-value=69 Score=33.96 Aligned_cols=53 Identities=19% Similarity=0.375 Sum_probs=40.4
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
+.|.|..++.+|.|.|++-+.+|.. .-+|-|+.||-+-- .....+|.+-+||-
T Consensus 36 ~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~------~~~~~iG~~~i~l~ 88 (121)
T cd08401 36 FRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVL------RRDSVIGKVAIKKE 88 (121)
T ss_pred EEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCC------CCCceEEEEEEEHH
Confidence 5688888999999999999999843 35899998874321 12357899988874
No 84
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=42.43 E-value=23 Score=33.80 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=38.5
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEE
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYT 651 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGya 651 (2010)
..+.|.+..+..+|.|.+++.+.++....+. |.|+.|+-....+ ...+|.+
T Consensus 34 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~--l~~~V~~~~~~~~------~~~iG~~ 84 (85)
T PF00168_consen 34 TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS--LSFEVWDKDSFGK------DELIGEV 84 (85)
T ss_dssp EEEEECCBSSBSSEEEEEEEEEEESHGCGTE--EEEEEEEETSSSS------EEEEEEE
T ss_pred eeeeeeeeeccccceeeeeeeeeeecccccc--eEEEEEECCCCCC------CCEEEEE
Confidence 5578888889999999999999977665555 9999997543322 4577764
No 85
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=41.87 E-value=34 Score=35.90 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=43.8
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|.-++.+|.|.+++...+|..--...+|.|+.+|-. .. .....+|-+.+||-.
T Consensus 53 ~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~--~~----~~~~~iG~~~i~l~~ 110 (123)
T cd08521 53 KRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHD--RF----GRNTFLGEVEIPLDS 110 (123)
T ss_pred eeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCC--CC----cCCceeeEEEEeccc
Confidence 45678888889999999999998865445678999988732 11 124589999999854
No 86
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=41.86 E-value=2.4e+02 Score=26.75 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCCccccCccCCCc
Q psy17025 1575 TWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQEGVCLGKD 1654 (2010)
Q Consensus 1575 ~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~~~~~g~~~~~~ 1654 (2010)
+.+..|+..+...|+|.||--++..+..+ .+.+ ++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~---~~----------------------------------------- 40 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQL---GD----------------------------------------- 40 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHT---TT-----------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHH---CC-----------------------------------------
Confidence 45688999999999999999999977655 3222 10
Q ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy17025 1655 FTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEK 1693 (2010)
Q Consensus 1655 fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~ 1693 (2010)
....+...+..+...+..-+.++.|+..++..+.++|+
T Consensus 41 -~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 41 -DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 01113456777888888888999999999999888874
No 87
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=41.70 E-value=71 Score=33.61 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=41.6
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
+.|.|...+.+|.|.+++.+.++..- ...|.|+.|+-.-. .....+|.+-+||-.
T Consensus 34 ~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~~------~~~~~iG~~~~~l~~ 88 (123)
T cd04025 34 LETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWDLV------SKNDFLGKVVFSIQT 88 (123)
T ss_pred EeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECCCC------CCCcEeEEEEEEHHH
Confidence 56888888999999999999998643 56899998873211 123588999999853
No 88
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=40.71 E-value=47 Score=35.01 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=42.3
Q ss_pred EEEEEeeecCCCCcceeEEEe-cCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQ-LPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~-LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..|.|...+.+|.|.+++.+. .|..--....|-|+.++-.- . .....+|.+-+||-+
T Consensus 53 ~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~--~----~~~~~iG~~~i~l~~ 110 (125)
T cd08386 53 LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR--F----SRNDPIGEVSLPLNK 110 (125)
T ss_pred eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC--C----cCCcEeeEEEEeccc
Confidence 578899999999999999986 56544445679998887421 1 123578999999864
No 89
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=40.23 E-value=69 Score=35.60 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=39.8
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
..|.|..++.+|.|+|++.+.+... ....+|.|+.|+-.-- .....+|.+-+||-
T Consensus 48 ~kT~v~~~t~nPvWNE~f~f~v~~p-~~~~~l~~~v~D~d~~------~~dd~iG~~~l~l~ 102 (151)
T cd04018 48 VKTSVKKNSYNPEWNEQIVFPEMFP-PLCERIKIQIRDWDRV------GNDDVIGTHFIDLS 102 (151)
T ss_pred eecceEcCCCCCCcceEEEEEeeCC-CcCCEEEEEEEECCCC------CCCCEEEEEEEeHH
Confidence 4678888999999999999876432 1235888888763211 13458999999975
No 90
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=39.91 E-value=62 Score=34.59 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=37.9
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
..|.|..++.+|.|+|++.+.++ +...|-|+.||-.-- + ....+|-+-+||-
T Consensus 49 ~kT~~~~~t~~P~Wne~f~~~v~----~~~~l~~~v~d~~~~-~-----~~~~iG~~~i~l~ 100 (132)
T cd04014 49 GKTSTKPKTNSPVWNEEFTTEVH----NGRNLELTVFHDAAI-G-----PDDFVANCTISFE 100 (132)
T ss_pred eEEeEcCCCCCCCcceeEEEEcC----CCCEEEEEEEeCCCC-C-----CCceEEEEEEEhH
Confidence 35677778899999999999886 567899998763211 1 2346888888874
No 91
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=38.95 E-value=1.5e+02 Score=28.21 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHH
Q psy17025 1660 FVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKS-RDYKKLSNIHSKLHDAYVKLYQ 1716 (2010)
Q Consensus 1660 l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~-~dy~kLs~i~~~la~~y~~I~~ 1716 (2010)
+...+...+..+..-+.|+.|++.|+..+.+.+.. .+...++.++..++.+|...-+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~ 61 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD 61 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence 44567778888889999999999999999996654 4556679999999999877654
No 92
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=38.61 E-value=41 Score=35.78 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=42.9
Q ss_pred EEEEEEeeecCCCCcceeEEEe-cCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQ-LPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~-LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|.-. .+|.|+|+|... ++..--.+.-|.|+.||-.- . .....+|-+-+||-.
T Consensus 52 ~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~-~-----~~~~~lG~~~i~L~~ 109 (124)
T cd08389 52 RAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER-M-----RKERLIGEKVVPLSQ 109 (124)
T ss_pred eeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC-c-----ccCceEEEEEEeccc
Confidence 345666554 999999999998 77766677889999998632 1 134589999999864
No 93
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=38.51 E-value=98 Score=34.55 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=39.4
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
+.|.|..++.+|.|+|++.+.++ +...+|-|+.++-. . - ....||-+-+||-+
T Consensus 72 ~rT~v~~~~~nP~WnE~F~~~~~---~~~~~l~~~V~d~d---~-~---~~~~IG~~~i~l~~ 124 (158)
T cd04015 72 ARTRVIENSENPVWNESFHIYCA---HYASHVEFTVKDND---V-V---GAQLIGRAYIPVED 124 (158)
T ss_pred eEEEEeCCCCCCccceEEEEEcc---CCCCEEEEEEEeCC---C-c---CCcEEEEEEEEhHH
Confidence 56888888999999999998776 33468999887632 1 1 12489999999753
No 94
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=38.49 E-value=2.3e+02 Score=30.05 Aligned_cols=54 Identities=7% Similarity=0.020 Sum_probs=41.3
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|...+.+|.|.|++.+.... ...+|.|+.|+-. .. ....+|.+-+++-.
T Consensus 36 ~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~i~V~d~~--~~-----~d~~lG~~~~~l~~ 89 (126)
T cd04046 36 SVRSPVQKDTLSPEFDTQAIFYRKK---PRSPIKIQVWNSN--LL-----CDEFLGQATLSADP 89 (126)
T ss_pred EEEeCccCCCCCCcccceEEEEecC---CCCEEEEEEEECC--CC-----CCCceEEEEEeccc
Confidence 4678899999999999999886652 3668999999832 21 13589999999864
No 95
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=38.04 E-value=75 Score=32.98 Aligned_cols=54 Identities=11% Similarity=0.024 Sum_probs=39.5
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
.+.|.|..++.+|.|++.+.+.++-. ...+|-|+.++-.-- ....+|...+||-
T Consensus 26 ~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-------~d~~iG~~~v~L~ 79 (111)
T cd04052 26 VYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR-------HDPVLGSVSISLN 79 (111)
T ss_pred EEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC-------CCCeEEEEEecHH
Confidence 35677888899999999998877632 467899988763221 2357888888874
No 96
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=37.91 E-value=58 Score=33.90 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=39.6
Q ss_pred EEEEEeee-cCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYH-NKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yH-nk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..|.+..+ +.+|.|.+++.+.+|.. ....|-|+.|+-.- . . ...+|.+-+||-.
T Consensus 35 ~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~--~----~-~~~iG~~~~~l~~ 89 (118)
T cd08681 35 KKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDK--R----K-PDLIGDTEVDLSP 89 (118)
T ss_pred cccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCC--C----C-CcceEEEEEecHH
Confidence 45666665 58999999999998875 45689999998321 1 1 3579999988753
No 97
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=37.63 E-value=44 Score=35.38 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=43.1
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|.-++.+|.|+|+|...+|..-. .+.|.|+.+|-.- .. .....+|-+-+||-.
T Consensus 48 ~~~kT~v~~~t~~P~~nE~F~f~v~~~~~-~~~l~v~V~~~~~-~~----~~~~~lG~~~i~l~~ 106 (119)
T cd08685 48 FRQKTSTVPDSANPLFHETFSFDVNERDY-QKRLLVTVWNKLS-KS----RDSGLLGCMSFGVKS 106 (119)
T ss_pred ceEeCccccCCCCCccccEEEEEcChHHh-CCEEEEEEECCCC-Cc----CCCEEEEEEEecHHH
Confidence 34578888889999999999999986543 3468888887421 11 124589999999864
No 98
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=37.10 E-value=1e+02 Score=31.67 Aligned_cols=58 Identities=16% Similarity=0.056 Sum_probs=40.8
Q ss_pred eEEEEEEeeecCCCCcceeEEEecC-CC-CCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLP-PT-LEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP-~~-l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..+.|.|...+.+|.|. |+.+.+. +. -....+|.|+.|+-.-.. ....+|.+-+||-.
T Consensus 38 ~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~------~d~~iG~~~~~l~~ 97 (110)
T cd04047 38 LVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG------KHDLIGEFETTLDE 97 (110)
T ss_pred EEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC------CCcEEEEEEEEHHH
Confidence 45789999999999999 7766542 11 122579999999753221 23589999999853
No 99
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=36.80 E-value=2.8e+02 Score=30.90 Aligned_cols=112 Identities=13% Similarity=0.203 Sum_probs=56.7
Q ss_pred cceEEEecceeeecCCCCCcceEEEEEEEEeCCCCCCccCceeCCCCCCCCceEEEEEEeeecCCCCcceeEEEecCC-C
Q psy17025 541 RNLLFVYPKEINFTGRTGSARNLTVKVQLMYGETPESALPAIFGKSSCPEFTTEAYTSVIYHNKCPYVSDEIKIQLPP-T 619 (2010)
Q Consensus 541 ~N~LYVyP~~l~f~~~k~~aRNI~v~V~l~~~d~~~~~l~~Iygk~~~~~f~~~~~t~V~yHnk~P~f~DEiKI~LP~-~ 619 (2010)
...|.|....+.+... +.--|=.++|.++|++ +..+...-..+-+... -...=.|+-.|.|+-|+ +
T Consensus 12 ~t~l~v~Iekiglkda-~~~~~P~~tVSV~D~~--G~~ve~~QdTpv~~~~----------~~~yv~f~~~v~lqtple~ 78 (147)
T PF14186_consen 12 MTYLSVFIEKIGLKDA-SQYIDPYFTVSVKDGN--GKDVEPPQDTPVGSRR----------EDNYVHFNNTVHLQTPLEK 78 (147)
T ss_dssp --EEEEEEEEEE-TTG-GG-EEEEEEEEEE-TT--S-BSS--EE--S-SEE----------ETTEEEEEEEEE-SS-GGG
T ss_pred CceEEEEEEEEEECCh-HHccCCeEEEEEECCC--CCCccccccCCCcccc----------cCCEEEEcccEEEcCCHHH
Confidence 3456677777776543 3445667788889754 3333222221211000 01112355566677774 6
Q ss_pred CCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccCCeeecCcEEeeEeec
Q psy17025 620 LEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKDGQLQLNDFCLPVTLE 673 (2010)
Q Consensus 620 l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~g~l~~ge~~LpV~~~ 673 (2010)
|.++.=++|.|.|-.-++++ ...-+|||+++ +.+..|...|.+|+-
T Consensus 79 lp~Gaai~fE~kH~K~kk~k-----~S~kcw~fme~---dei~~g~~~lely~K 124 (147)
T PF14186_consen 79 LPKGAAIFFEFKHYKPKKKK-----TSTKCWAFMEL---DEIKPGPVVLELYKK 124 (147)
T ss_dssp S-TT-EEEEEEEEEETTTTC-----EEEEEEEEEEG---GG--SEEEEE--EES
T ss_pred CCCceEEEEEEEeeecccee-----eeeeEEEEEEh---hhccCCceeeehhcC
Confidence 88999999999996554432 33559999998 456667777777773
No 100
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=36.78 E-value=5.4e+02 Score=33.99 Aligned_cols=261 Identities=19% Similarity=0.221 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHH
Q psy17025 1363 TEVSFTILNTLELIVQVVQQCDHLHGLLGSVMKILLHAFSCNQSTAVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQ 1442 (2010)
Q Consensus 1363 tEv~liVLD~le~~~~~l~~~d~~~~ll~~vf~vll~~L~~nQS~~~l~~~faslR~~i~kF~~~LF~~~~~~c~~l~~~ 1442 (2010)
..-..|++.++..++.-. ....++..+...+..+|..+ +.-+.-.++.++..++.+++..+| ... ..
T Consensus 242 s~~~~V~~e~~~~i~~l~----~~~~~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~--~~~------~~ 308 (526)
T PF01602_consen 242 SSSPSVVYEAIRLIIKLS----PSPELLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF--NQS------LI 308 (526)
T ss_dssp HHHHHHHHHHHHHHHHHS----SSHHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG--THH------HH
T ss_pred ccccHHHHHHHHHHHHhh----cchHHHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh--hhh------hh
Confidence 334566777777776431 22338899999999999833 333444455667777777766665 211 11
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhhcccccccCC
Q psy17025 1443 LLKHSSSNLSLIRTNSAASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQSFNETSLRRSLKTILLYSEQDRELEDT 1522 (2010)
Q Consensus 1443 lL~~c~s~~~~lR~~A~~~Lyllmr~nf~~~~nf~rvk~q~i~aLs~Lv~~~~~f~e~~lr~sL~~i~~~a~~D~~~~~t 1522 (2010)
+..+..+....+|..|..+|+.|.-.+ |+.. ++..|-..+.... +.+.-+..+..|...|... ..
T Consensus 309 ~~~l~~~~d~~Ir~~~l~lL~~l~~~~-----n~~~----Il~eL~~~l~~~~--d~~~~~~~i~~I~~la~~~----~~ 373 (526)
T PF01602_consen 309 LFFLLYDDDPSIRKKALDLLYKLANES-----NVKE----ILDELLKYLSELS--DPDFRRELIKAIGDLAEKF----PP 373 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH--HH-----HHHH----HHHHHHHHHHHC----HHHHHHHHHHHHHHHHHH----GS
T ss_pred hheecCCCChhHHHHHHHHHhhccccc-----chhh----HHHHHHHHHHhcc--chhhhhhHHHHHHHHHhcc----Cc
Confidence 223334778999999999999998653 2222 3333444441110 1122233444554444322 11
Q ss_pred ChHHHHHHHHHHHHHHHhhhHhhhhhcCCHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Q psy17025 1523 TFPEQVKDLVFNLHMILSDTVKMKEFQEDPEMLLDLMYRIAKGYQNSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAA 1602 (2010)
Q Consensus 1523 ~F~~~v~~L~~~L~~il~dt~~m~e~~~DpE~l~dl~~~lA~~Y~~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~Aa 1602 (2010)
.+..-++-++ .++.... ++. .+ +....+.+-..+.|+++..-+..|.+.-.. -...++ ...++-
T Consensus 374 ~~~~~v~~l~----~ll~~~~---~~~--~~---~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~-~~~~~~---~~~~~w 437 (526)
T PF01602_consen 374 DAEWYVDTLL----KLLEISG---DYV--SN---EIINVIRDLLSNNPELREKILKKLIELLED-ISSPEA---LAAAIW 437 (526)
T ss_dssp SHHHHHHHHH----HHHHCTG---GGC--HC---HHHHHHHHHHHHSTTTHHHHHHHHHHHHTS-SSSHHH---HHHHHH
T ss_pred hHHHHHHHHH----Hhhhhcc---ccc--cc---hHHHHHHHHhhcChhhhHHHHHHHHHHHHH-hhHHHH---HHHHHh
Confidence 1222222222 2322211 111 11 122223333345688887778888776655 333443 233334
Q ss_pred HHHHHhhhccCCCCcCCcccc-ccccCccchhhcccCCCCCCccccCccCCCccCHHHHHHHHHHHHHHHHHhccccHHH
Q psy17025 1603 LVAEYLHMIEEQPYLPLGAVS-LEFISPNCLEECAVSDDVLSPEQEGVCLGKDFTESGFVCLLEHAASSFYTAGMYETVN 1681 (2010)
Q Consensus 1603 Liae~L~~~~~~~~lp~~~~~-F~~I~pni~~E~~~~~d~~~~~~~g~~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai 1681 (2010)
++.||-...+... .+.. +..+..++.+| +......++...++.+.+...-|...
T Consensus 438 ilGEy~~~~~~~~----~~~~~~~~l~~~~~~~---------------------~~~vk~~ilt~~~Kl~~~~~~~~~~~ 492 (526)
T PF01602_consen 438 ILGEYGELIENTE----SAPDILRSLIENFIEE---------------------SPEVKLQILTALAKLFKRNPENEVQN 492 (526)
T ss_dssp HHHHHCHHHTTTT----HHHHHHHHHHHHHTTS---------------------HHHHHHHHHHHHHHHHHHSCSTTHHH
T ss_pred hhcccCCcccccc----cHHHHHHHHHHhhccc---------------------cHHHHHHHHHHHHHHHhhCCchhhHH
Confidence 6667765432100 0000 00010111000 12224467777788887766555555
Q ss_pred HHHHHHHHHHH
Q psy17025 1682 NVYKVIFPIVE 1692 (2010)
Q Consensus 1682 ~l~k~Lip~yE 1692 (2010)
.+...+..+..
T Consensus 493 ~i~~~~~~~~~ 503 (526)
T PF01602_consen 493 EILQFLLSLAT 503 (526)
T ss_dssp HHHHHHHCHHH
T ss_pred HHHHHHHHHhc
Confidence 66666666665
No 101
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=36.32 E-value=67 Score=35.55 Aligned_cols=57 Identities=9% Similarity=0.074 Sum_probs=43.0
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
+...|.|..++.+|.|+|+|.+.++ + .++-|.|+.+| ...... ....+|-+-+||-+
T Consensus 67 ~k~KT~v~kktlnPvfNE~F~f~v~--l-~~~~L~v~V~~-d~~~~~----~~~~iG~~~i~L~~ 123 (146)
T cd04028 67 AKKKTKIARKTLDPLYQQQLVFDVS--P-TGKTLQVIVWG-DYGRMD----KKVFMGVAQILLDD 123 (146)
T ss_pred cceeceecCCCCCCccCCeEEEEEc--C-CCCEEEEEEEe-CCCCCC----CCceEEEEEEEccc
Confidence 4567889999999999999999999 3 56678899996 222211 22478999999854
No 102
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=35.56 E-value=50 Score=36.10 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=45.9
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccC
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKD 658 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~ 658 (2010)
+...|.|..++.||.|+|.+-..+|...-+.--|.|+.++-..-.+ ...+|=.-|++...
T Consensus 54 ~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~------~d~iG~v~lg~~~~ 113 (138)
T cd08407 54 KKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQ------SLPLGRCSLGLHTS 113 (138)
T ss_pred ceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcC------cceeceEEecCcCC
Confidence 4456889999999999999999999776666679999998644222 23678888877543
No 103
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=33.66 E-value=53 Score=34.50 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=41.9
Q ss_pred EEEEEEeeecCCCCcceeEEEec-CCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQL-PPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~L-P~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|..++.+|.|.+++-+.+ +..-....+|.|+.|+-.-. + ....+|.+-+||-.
T Consensus 54 ~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~-~-----~~~~iG~~~i~l~~ 112 (125)
T cd04031 54 KRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRD-G-----ENDFLGEVVIDLAD 112 (125)
T ss_pred cccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCC-C-----CCcEeeEEEEeccc
Confidence 34688889999999999999874 42222457899999984321 1 23589999999865
No 104
>KOG1586|consensus
Probab=33.50 E-value=2.4e+02 Score=33.68 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCCccccCc
Q psy17025 1570 PNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQEGV 1649 (2010)
Q Consensus 1570 PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~~~~~g~ 1649 (2010)
-+--..-+.+=+....-..||.-||.|++.+|.++... ++ . +|
T Consensus 30 ~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~----~s-k-----------------------hD--------- 72 (288)
T KOG1586|consen 30 YEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKA----GS-K-----------------------HD--------- 72 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc----CC-c-----------------------hh---------
Confidence 33334444556777777889999999999888775321 10 0 11
Q ss_pred cCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q psy17025 1650 CLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAYVKLY 1715 (2010)
Q Consensus 1650 ~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y~~I~ 1715 (2010)
.-.-+-+|.+.|.++ .-+.|+.+....|.+|-..-.|..-|.-|..++++|+.=.
T Consensus 73 ----------aat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl 127 (288)
T KOG1586|consen 73 ----------AATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDL 127 (288)
T ss_pred ----------HHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhH
Confidence 112355688889888 7788888899999999988888888899999999987553
No 105
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=33.32 E-value=5.7e+02 Score=32.78 Aligned_cols=101 Identities=16% Similarity=0.144 Sum_probs=66.1
Q ss_pred HHHHHHhhc--CCCchhHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhhccc
Q psy17025 1439 LCLQLLKHS--SSNLSLIRTNSAASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQSFNETSLRRSLKTILLYSEQD 1516 (2010)
Q Consensus 1439 l~~~lL~~c--~s~~~~lR~~A~~~Lyllmr~nf~~~~nf~rvk~q~i~aLs~Lv~~~~~f~e~~lr~sL~~i~~~a~~D 1516 (2010)
+-..||+|- ..-.+.+|..|+.++..|+++...-.++ .++.|++.++++.+.+--.+....+=+.|.++.. -|
T Consensus 257 ~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~--~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~---l~ 331 (373)
T PF14911_consen 257 VLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSG--EPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAE---LD 331 (373)
T ss_pred hhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcc--hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH---hC
Confidence 334555553 2347899999999999999998844443 5667888999999875322222222234555443 34
Q ss_pred ccccCCChHHHHHHHHHHHHHHHhhhHhhhhhcCCH
Q psy17025 1517 RELEDTTFPEQVKDLVFNLHMILSDTVKMKEFQEDP 1552 (2010)
Q Consensus 1517 ~~~~~t~F~~~v~~L~~~L~~il~dt~~m~e~~~Dp 1552 (2010)
++-|..|+..++..+.++-+..-..+|.
T Consensus 332 --------p~lV~~Lip~i~q~l~~~E~kRG~G~d~ 359 (373)
T PF14911_consen 332 --------PQLVISLIPTIRQSLKDSERKRGLGRDV 359 (373)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhcCCcCH
Confidence 5567888888888888876655555554
No 106
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=32.85 E-value=2.3e+02 Score=30.17 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=41.7
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccc-----cCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKL-----EQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~-----~~~~~et~vGyawLPLl~ 657 (2010)
...|.+...+.+|.|.+++-+.++. ...+|-|+.|+-.+..+. -.......+|...+||-.
T Consensus 34 ~~kT~~v~~t~~P~Wne~f~f~~~~---~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~ 99 (127)
T cd04027 34 KKRTKTIPQNLNPVWNEKFHFECHN---SSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRT 99 (127)
T ss_pred eeecceecCCCCCccceEEEEEecC---CCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHH
Confidence 3567788889999999999887642 246899999985542110 000135688999998864
No 107
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=32.52 E-value=1.1e+02 Score=32.26 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=38.3
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeec
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPL 655 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPL 655 (2010)
+.|.|...+.+|.|++++.+.++. ...+|-|+.||-.-. .....+|.+.+++
T Consensus 35 ~kT~v~~~t~nP~Wne~f~~~~~~---~~~~l~v~v~d~~~~------~~d~~iG~~~~~~ 86 (121)
T cd04054 35 IRTATVWKTLNPFWGEEYTVHLPP---GFHTVSFYVLDEDTL------SRDDVIGKVSLTR 86 (121)
T ss_pred eeeeeEcCCCCCcccceEEEeeCC---CCCEEEEEEEECCCC------CCCCEEEEEEEcH
Confidence 467788889999999999998863 236888888773211 1235788888885
No 108
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=32.16 E-value=1.1e+02 Score=33.05 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=37.9
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|.-. .+|.|.||+...+.- .+.+|.+.++.-.- .....+|.+++||-.
T Consensus 32 k~kT~v~~~-~nP~WnE~F~F~~~~---~~~~L~v~V~dkd~-------~~DD~lG~v~i~L~~ 84 (127)
T cd08394 32 KSTTIAVRG-SQPCWEQDFMFEINR---LDLGLVIELWNKGL-------IWDTLVGTVWIPLST 84 (127)
T ss_pred EeEeeECCC-CCCceeeEEEEEEcC---CCCEEEEEEEeCCC-------cCCCceEEEEEEhHH
Confidence 345666644 699999999999863 44558888886221 134589999999973
No 109
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=31.54 E-value=94 Score=33.07 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=42.5
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..+.|.|.-++.+|.|.+++.+.++... ...+|-|+.|+-.- .+ ....+|-+-+||-.
T Consensus 50 ~~~rT~v~~~~~~P~wne~f~~~~~~~~-~~~~l~v~v~d~~~-~~-----~~~~iG~~~~~l~~ 107 (131)
T cd04026 50 TKQKTKTIKKTLNPVWNETFTFDLKPAD-KDRRLSIEVWDWDR-TT-----RNDFMGSLSFGVSE 107 (131)
T ss_pred ceecceeecCCCCCCccceEEEeCCchh-cCCEEEEEEEECCC-CC-----CcceeEEEEEeHHH
Confidence 3467888888999999999999987543 34689999987321 11 23588888888753
No 110
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=31.47 E-value=85 Score=25.85 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCChhhhHHHHHHHHHH
Q psy17025 1577 LANMAQKHMERNNHTEAGMCLVHSAAL 1603 (2010)
Q Consensus 1577 L~~La~~H~~~~n~~EAa~cl~h~AaL 1603 (2010)
+.+|++.|.+.|+|.+|.-++..+.++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 568999999999999999999976544
No 111
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=31.18 E-value=1.4e+02 Score=32.78 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=39.1
Q ss_pred eEEEEEEeeecC-CCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 593 TEAYTSVIYHNK-CPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 593 ~~~~t~V~yHnk-~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
+.--|.|...+. +|.|+|+|-..+|.++. .-.|.++.|+-+...+. ..||=-.|+.-
T Consensus 51 ~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~-~v~l~v~v~d~~~~~~n------~~IG~v~lG~~ 108 (135)
T cd08692 51 YKKKTRLVKSSNGQVKWGETMIFPVTQQEH-GIQFLIKLYSRSSVRRK------HFLGQVWISSD 108 (135)
T ss_pred eeecCccEECCCCCceecceEEEeCCchhh-eeEEEEEEEeCCCCcCC------ceEEEEEECCc
Confidence 445677888884 69999999999999864 46777777765432222 25666666653
No 112
>KOG1030|consensus
Probab=29.94 E-value=1e+02 Score=34.83 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=40.3
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
....|.|.|+|.||+|+||+-..++ ...-+|-.|.|.-....+.+ .+|=|-+||-
T Consensus 38 q~lkT~~v~~n~NPeWNe~ltf~v~---d~~~~lkv~VyD~D~fs~dD------~mG~A~I~l~ 92 (168)
T KOG1030|consen 38 QKLKTRVVYKNLNPEWNEELTFTVK---DPNTPLKVTVYDKDTFSSDD------FMGEATIPLK 92 (168)
T ss_pred eeeeeeeecCCCCCcccceEEEEec---CCCceEEEEEEeCCCCCccc------ccceeeeccH
Confidence 3456779999999999999998887 34457999999754444333 5677777664
No 113
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=29.82 E-value=1.2e+02 Score=31.56 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=39.8
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
.+.|.|..++.+|.|.+++.+.++.. ...+|-|+.|+-... + ...+|.+-+||-
T Consensus 40 ~~kT~~~~~t~~P~W~e~f~~~v~~~--~~~~l~i~v~d~~~~--~-----~~~iG~~~i~l~ 93 (121)
T cd08391 40 TFKSKVIKENLNPKWNEVYEAVVDEV--PGQELEIELFDEDPD--K-----DDFLGRLSIDLG 93 (121)
T ss_pred eEEccccCCCCCCcccceEEEEeCCC--CCCEEEEEEEecCCC--C-----CCcEEEEEEEHH
Confidence 46788888899999999998776543 456899998875332 1 247888888874
No 114
>PLN03008 Phospholipase D delta
Probab=27.91 E-value=1.5e+02 Score=41.26 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=37.5
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
.+.|-|..++.||.|+|+|.|.++- ...+|-|+.|.=.-- ...+||-+.+||-
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah---~~s~L~f~VkD~D~~-------gaD~IG~a~IPL~ 142 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAH---PFAYLEFQVKDDDVF-------GAQIIGTAKIPVR 142 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecC---CCceEEEEEEcCCcc-------CCceeEEEEEEHH
Confidence 4578899999999999999999884 344899998861111 1246666666653
No 115
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=27.45 E-value=1.7e+02 Score=32.89 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=41.4
Q ss_pred eEEEEEEeeecCCCCcceeEEEec-CCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQL-PPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~L-P~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..+.|.|..++.+|.|.+++.+.+ +..-.....|.|+.|+-.-.. ....+|...++|-.
T Consensus 64 ~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~------~d~~lG~v~i~l~~ 123 (162)
T cd04020 64 SKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLS------SNDFLGGVRLGLGT 123 (162)
T ss_pred cceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCC------CCceEEEEEEeCCc
Confidence 346788999999999999999874 332223457899999743211 23578888888753
No 116
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=25.57 E-value=1.4e+02 Score=33.28 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=40.9
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
-+.|.|...+.+|.|.+++.+.++.. ....|-|+.|+-. ...+|.+.+||-.
T Consensus 90 ~~kT~v~~~tlnP~WnE~F~f~v~~~--~~~~L~i~V~D~d----------d~~IG~v~i~l~~ 141 (153)
T cd08676 90 IKVTEVKPQTLNPVWNETFRFEVEDV--SNDQLHLDIWDHD----------DDFLGCVNIPLKD 141 (153)
T ss_pred cEecceecCCCCCccccEEEEEeccC--CCCEEEEEEEecC----------CCeEEEEEEEHHH
Confidence 35688889999999999999988532 4578999998753 2488999999853
No 117
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=25.15 E-value=2e+02 Score=30.34 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=39.8
Q ss_pred EEEEEeee-cCCCCcceeEEEecCCCCC-CCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 595 AYTSVIYH-NKCPYVSDEIKIQLPPTLE-DKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 595 ~~t~V~yH-nk~P~f~DEiKI~LP~~l~-~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
..|.|... +.+|.|++++-+.++..-. ..-+|.|..|+-.-. .....+|.+-+||-
T Consensus 35 ~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~------~~d~~iG~~~i~l~ 92 (124)
T cd04049 35 RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF------SDDDFIGEATIHLK 92 (124)
T ss_pred eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC------CCCCeEEEEEEEhH
Confidence 46666664 7899999999998886532 345888888874211 12458999999974
No 118
>KOG1585|consensus
Probab=24.86 E-value=8.6e+02 Score=29.53 Aligned_cols=160 Identities=14% Similarity=0.082 Sum_probs=100.8
Q ss_pred hcCCHHHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCcccccc
Q psy17025 1548 FQEDPEMLLDLMYRIAKGYQ--NSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLE 1625 (2010)
Q Consensus 1548 ~~~DpE~l~dl~~~lA~~Y~--~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~ 1625 (2010)
|.-|-.-.+.+|.+-|..|+ ..++=+---|.+-++-|..+.++--||-.+-.+|.|.-|.-+|.+ -...|.
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsE-------vvdl~e 95 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSE-------VVDLYE 95 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHH
Confidence 66677777888888899995 568888889999999999999999999999988876544444432 111111
Q ss_pred ccCccchhhcccCCCCCCc-cccCccCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHH
Q psy17025 1626 FISPNCLEECAVSDDVLSP-EQEGVCLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIH 1704 (2010)
Q Consensus 1626 ~I~pni~~E~~~~~d~~~~-~~~g~~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~ 1704 (2010)
+-|--+. |+.-+|..--+ +.-+... ..-..+.-+++|.++...++.+++--.|.++|..+..+|-..+-|..-+...
T Consensus 96 KAs~lY~-E~GspdtAAmaleKAak~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 96 KASELYV-ECGSPDTAAMALEKAAKAL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred HHHHHHH-HhCCcchHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHH
Confidence 1111111 11100000000 0000000 0002333568888888888888888888888888888877777777777766
Q ss_pred HHHHHHHHHHHH
Q psy17025 1705 SKLHDAYVKLYQ 1716 (2010)
Q Consensus 1705 ~~la~~y~~I~~ 1716 (2010)
.+.-.++.++..
T Consensus 174 lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 174 LKEGVAADKCDA 185 (308)
T ss_pred HHhhhHHHHHhh
Confidence 776666666654
No 119
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=24.53 E-value=1.6e+02 Score=31.23 Aligned_cols=55 Identities=7% Similarity=0.114 Sum_probs=39.1
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|.-++.+|.|.+++-+.++.. .-.|.|+.|+-.-. .....||.+-+||-.
T Consensus 35 ~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~~------~~d~~IG~~~~~l~~ 89 (120)
T cd04045 35 KGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEKV------GKDRSLGSVEINVSD 89 (120)
T ss_pred eeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCCC------CCCCeeeEEEEeHHH
Confidence 35666777889999999998876542 34899998864211 123589999999753
No 120
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=24.13 E-value=1.3e+02 Score=31.87 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=39.0
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..|.|...+.+|.|.|++-+.++. ....+|-|+.|+-.- . ....+|-+-+||-.
T Consensus 30 ~kT~v~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~--~-----~~~~lG~~~i~l~~ 83 (121)
T cd08378 30 GSTKAIERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDK--A-----KDDFLGGVCFDLSE 83 (121)
T ss_pred ccccccCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCC--C-----cCceeeeEEEEhHh
Confidence 467788889999999999998642 256799999997531 1 12367777777653
No 121
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=24.09 E-value=1.1e+03 Score=27.14 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHhc--CCCCcchHHHHH-HHHHHHhh
Q psy17025 1436 CADLCLQLLKHSSSNLSLIRTNSAASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVG--TSQSFNETSLRR-SLKTILLY 1512 (2010)
Q Consensus 1436 c~~l~~~lL~~c~s~~~~lR~~A~~~Lyllmr~nf~~~~nf~rvk~q~i~aLs~Lv~--~~~~f~e~~lr~-sL~~i~~~ 1512 (2010)
-...+..||++|-+....+|..|..++-+.+|+.+..-. + .+..||+ +++ +..++. +.......
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-------~---cvp~lIAL~ts~---~~~ir~~A~~~l~~l 72 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-------Q---CVPTLIALETSP---NPSIRSRAYQLLKEL 72 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-------H---HHhHhhhhhCCC---ChHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999875532 1 2333332 121 122322 22222222
Q ss_pred hcccccccCCChHHHHHHHHHHHHH-HHhhhHhhhhhcCCHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHcCCh-
Q psy17025 1513 SEQDRELEDTTFPEQVKDLVFNLHM-ILSDTVKMKEFQEDPEMLLDLMYRIAKGYQNSPNLRLTWLANMAQKHMERNNH- 1590 (2010)
Q Consensus 1513 a~~D~~~~~t~F~~~v~~L~~~L~~-il~dt~~m~e~~~DpE~l~dl~~~lA~~Y~~~PdLrl~wL~~La~~H~~~~n~- 1590 (2010)
.+..+.+-.+.+.+.|+.-.+ .+. +-.+....... .........|++.. ++.-.|.+++.+|.+.-......
T Consensus 73 ~eK~~s~v~~~~~~gi~~af~-~~~~l~~~~~~~~~~--~~~~~l~~ly~ll~---~~r~~R~~Fl~~l~k~f~~~~~~~ 146 (187)
T PF12830_consen 73 HEKHESLVESRYSEGIRLAFD-YQRRLSSDSRGARRG--PPSAFLSRLYSLLR---SNRKSRRKFLKSLLKQFDFDLTKL 146 (187)
T ss_pred HHHhHHHHHHHHHHHHHHHHH-HHHHhcCCccccccc--cchHHHHHHHHHHh---cccHhHHHHHHHHHHHHHhhcccc
Confidence 222222222333333333222 221 11111111000 03444555566644 56688888888888877766533
Q ss_pred -hhhHHHHHHHHHHHHHHh
Q psy17025 1591 -TEAGMCLVHSAALVAEYL 1608 (2010)
Q Consensus 1591 -~EAa~cl~h~AaLiae~L 1608 (2010)
.|....-+.-...+|+-|
T Consensus 147 ~~~~~~~~l~~~~Fla~nL 165 (187)
T PF12830_consen 147 SSESSPSDLDFLLFLAENL 165 (187)
T ss_pred ccccchhHHHHHHHHHHHH
Confidence 233444333333455555
No 122
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=23.49 E-value=1.4e+02 Score=23.46 Aligned_cols=28 Identities=14% Similarity=-0.043 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCChhhhHHHHHHHHH
Q psy17025 1575 TWLANMAQKHMERNNHTEAGMCLVHSAA 1602 (2010)
Q Consensus 1575 ~wL~~La~~H~~~~n~~EAa~cl~h~Aa 1602 (2010)
.|+..|+..+...|+|.||-.|+..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4778899999999999999999986543
No 123
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=22.43 E-value=1.3e+02 Score=30.99 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=39.2
Q ss_pred EEEEEEeeecCCCCcceeEEEec--CCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQL--PPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~L--P~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
...|.|..++.+|.|.|++.+.+ |..--...+|-|+.|+-.-- + ....+|-+-+||-
T Consensus 33 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~-~-----~~~~iG~~~i~l~ 91 (111)
T cd04011 33 KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL-R-----SDTLIGSFKLDVG 91 (111)
T ss_pred eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc-c-----cCCccEEEEECCc
Confidence 45788888899999999997764 43323356899999873211 1 2357777777764
No 124
>KOG1840|consensus
Probab=22.28 E-value=2e+03 Score=29.25 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=56.7
Q ss_pred ChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCCccccC
Q psy17025 1569 SPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQEG 1648 (2010)
Q Consensus 1569 ~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~~~~~g 1648 (2010)
.=.....-+.+||....+.|.|.||--|+-.+..+....+ + .
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~---~-----~------------------------------ 319 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL---G-----A------------------------------ 319 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh---c-----c------------------------------
Confidence 3344556778899999999999999999997665432210 0 0
Q ss_pred ccCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy17025 1649 VCLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEK 1693 (2010)
Q Consensus 1649 ~~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~ 1693 (2010)
+...+...+...+..+...+.+|.|..+++....+|+.
T Consensus 320 -------~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 320 -------SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred -------ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 11124455666677788888899999999999999984
No 125
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=22.20 E-value=2.3e+02 Score=29.21 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=28.2
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEe
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYH 632 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyH 632 (2010)
+.|.|.-+ .+|.|.|++.+.+|........|-|..++
T Consensus 32 ~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d 68 (117)
T cd08383 32 ARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKD 68 (117)
T ss_pred EecceEEC-CCCcccceEEEecCCccccEEEEEEEEEe
Confidence 56777777 99999999999998654455667666655
No 126
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=22.17 E-value=1.4e+02 Score=23.77 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=22.5
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHHH
Q psy17025 1441 LQLLKHSSSNLSLIRTNSAASLYLLMR 1467 (2010)
Q Consensus 1441 ~~lL~~c~s~~~~lR~~A~~~Lyllmr 1467 (2010)
..++++++.+.++||..|+-.|-.+++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 457788999999999999999988775
No 127
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=22.07 E-value=4.4e+02 Score=28.34 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=36.9
Q ss_pred eEEEEEEeeecCCCCcceeEEEec---CC---CCC-CCcEEEEEEEeeeccccccCCCccceEEEEEe
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQL---PP---TLE-DKHHLLFTFYHISCQKKLEQNTVETPVGYTWL 653 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~L---P~---~l~-~~hHLLFTFyHvsc~~k~~~~~~et~vGyawL 653 (2010)
....|.|..++.+|.|++++.+.. |. ++. ...+|.|+.++-.-. .....+|-+.+
T Consensus 33 ~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~------~~d~~iG~~~i 94 (135)
T cd04017 33 QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSV------GKDEFLGRSVA 94 (135)
T ss_pred eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCC------CCCccceEEEe
Confidence 346788899999999999998763 22 222 235788988863221 12347888876
No 128
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=21.71 E-value=1.9e+02 Score=30.32 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=39.9
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
.+.|.|...+.+|.|.+++-+.++. ....+|-|+.|+-.-.. ....+|-+-+||-
T Consensus 36 ~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~~~~------~~~~lG~~~i~l~ 90 (128)
T cd04024 36 RFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKDRFA------GKDYLGEFDIALE 90 (128)
T ss_pred EEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECCCCC------CCCcceEEEEEHH
Confidence 3568888889999999999887765 34568999988743211 2347888888864
No 129
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.96 E-value=5.3e+02 Score=25.57 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHHHH
Q psy17025 1660 FVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKS-----RDYKKLSNIHSKLHDAYVKLYQ 1716 (2010)
Q Consensus 1660 l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~-----~dy~kLs~i~~~la~~y~~I~~ 1716 (2010)
-+.++.+|++ .+++|.|+.|+.+|+.-+.++-.. .+=.++..+..++.+.-+++..
T Consensus 6 Ai~~a~~Ave-~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~ 66 (76)
T cd02681 6 AVQFARLAVQ-RDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQA 66 (76)
T ss_pred HHHHHHHHHH-HHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 3567788887 899999999999999999888762 2333555566666666666554
No 130
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=20.90 E-value=1.8e+02 Score=29.69 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=38.5
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
....|.|..++.+|.|+|++.+.++.. ....|-|+.++-. + ...+|..-+||-
T Consensus 32 ~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~v~v~d~~---~------~~~iG~~~i~l~ 84 (105)
T cd04050 32 TTQKSKVKERTNNPVWEEGFTFLVRNP--ENQELEIEVKDDK---T------GKSLGSLTLPLS 84 (105)
T ss_pred EEEeCccccCCCCCcccceEEEEeCCC--CCCEEEEEEEECC---C------CCccEEEEEEHH
Confidence 345677888899999999999998753 3347777776521 1 246888888875
No 131
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=20.67 E-value=3.5e+02 Score=29.21 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=44.5
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc--CCeeecCcEE
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK--DGQLQLNDFC 667 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~--~g~l~~ge~~ 667 (2010)
.+.|.|..++.||.|+|++-+.+.- ....|-|+.|.=.-...++.......+|-+-+||-. .|......|.
T Consensus 36 ~~rTk~~~~~~nP~WnE~f~f~v~~---~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~ 108 (126)
T cd08379 36 WVRTRTVEDSSNPRWNEQYTWPVYD---PCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYP 108 (126)
T ss_pred EeEcCcccCCCCCcceeEEEEEecC---CCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEE
Confidence 4578888889999999999998753 223788888763221100000134688999998643 3443333443
No 132
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=20.36 E-value=2.6e+02 Score=30.52 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=41.6
Q ss_pred EEEEEEeeecCCCCc-ceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYV-SDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f-~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|...+.+|.| .|++...++. ..+|.|+.|+-....+. .....+|+.-+||-.
T Consensus 46 ~~kT~v~~~tlnP~W~nE~f~f~v~~----~~~L~v~V~D~~~~~~~---~~~d~lG~~~i~l~~ 103 (137)
T cd08691 46 ECRTSIVENTINPVWHREQFVFVGLP----TDVLEIEVKDKFAKSRP---IIRRFLGKLSIPVQR 103 (137)
T ss_pred eeeeeeEcCCCCCceEceEEEEEcCC----CCEEEEEEEecCCCCCc---cCCceEEEEEEEHHH
Confidence 567888888999999 9999998863 34899999873211110 124689999999754
No 133
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=20.21 E-value=2.1e+02 Score=31.00 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=41.4
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCC-------------CCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLE-------------DKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~-------------~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|..++.+|.|++++.+.++..-. .+.-|-|+.|+-.-. .....+|-..+||-.
T Consensus 35 ~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~------~~~~~IG~~~i~l~~ 105 (137)
T cd08675 35 TKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMV------SGDDFLGEVRIPLQG 105 (137)
T ss_pred eeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcC------cCCcEEEEEEEehhh
Confidence 3577788889999999999999876522 456777777763211 124588999999754
Done!