Query psy17025
Match_columns 2010
No_of_seqs 326 out of 587
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:54:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wm9_A Dedicator of cytokinesi 100.0 8.7E-94 3E-98 894.4 39.9 423 1564-1997 1-426 (428)
2 2yin_A DOCK2, dedicator of cyt 100.0 8.7E-83 3E-87 794.6 35.2 415 1542-1997 3-434 (436)
3 3vhl_A Dedicator of cytokinesi 100.0 1.7E-68 5.9E-73 629.2 26.3 281 1718-2000 8-288 (288)
4 3l4c_A Dedicator of cytokinesi 100.0 3.2E-41 1.1E-45 375.6 14.3 185 527-718 15-220 (220)
5 1wfm_A Synaptotagmin XIII; C2 79.9 5.9 0.0002 41.1 9.4 59 593-657 59-117 (138)
6 2ifu_A Gamma-SNAP; membrane fu 70.7 35 0.0012 39.7 14.0 42 1666-1708 121-162 (307)
7 3ro3_A PINS homolog, G-protein 67.0 39 0.0013 33.5 11.7 52 1663-1714 91-142 (164)
8 2ifu_A Gamma-SNAP; membrane fu 65.3 47 0.0016 38.6 13.5 49 1663-1711 78-126 (307)
9 1qqe_A Vesicular transport pro 64.2 58 0.002 37.5 13.9 97 1570-1713 33-129 (292)
10 3f04_A Synaptotagmin-1; C2A, c 63.9 3.2 0.00011 43.2 2.7 58 594-657 70-127 (143)
11 1w15_A Synaptotagmin IV; metal 60.1 8.4 0.00029 40.5 5.2 59 593-657 67-125 (153)
12 3ro2_A PINS homolog, G-protein 59.7 2.2E+02 0.0075 31.8 17.7 120 1550-1716 19-138 (338)
13 1ugk_A Synaptotagmin IV, KIAA1 58.9 8.4 0.00029 39.7 4.8 59 593-657 58-117 (138)
14 3b7y_A E3 ubiquitin-protein li 58.3 11 0.00038 39.5 5.8 57 592-657 57-113 (153)
15 3ro2_A PINS homolog, G-protein 57.5 1.1E+02 0.0037 34.4 14.5 54 1662-1715 264-317 (338)
16 3fdw_A Synaptotagmin-like prot 57.4 9.2 0.00032 40.0 4.9 60 592-657 60-119 (148)
17 1rsy_A Synaptotagmin I; calciu 56.4 4.8 0.00016 42.5 2.4 58 594-657 78-135 (152)
18 1tjx_A Similar to synaptotagmi 56.2 8.4 0.00029 40.8 4.4 59 593-657 62-120 (159)
19 3n5a_A Synaptotagmin-7; calciu 56.1 7.9 0.00027 39.7 4.0 59 593-657 53-111 (138)
20 3n71_A Histone lysine methyltr 56.0 2.8E+02 0.0094 35.0 19.0 102 1568-1715 346-449 (490)
21 1rlw_A Phospholipase A2, CALB 55.0 16 0.00054 36.8 6.0 55 593-656 41-95 (126)
22 2chd_A Rabphilin-3A, exophilin 53.8 5.7 0.0002 41.2 2.5 60 592-657 65-125 (142)
23 1qqe_A Vesicular transport pro 52.5 2.3E+02 0.0078 32.3 16.3 49 1663-1711 119-168 (292)
24 2dmh_A Myoferlin; beta-sandwic 52.3 14 0.00048 38.0 5.2 58 594-657 39-97 (140)
25 3sf4_A G-protein-signaling mod 51.9 2.7E+02 0.0091 32.4 17.2 119 1551-1716 24-142 (406)
26 2d8k_A Synaptotagmin VII; exoc 51.7 7.8 0.00027 40.1 3.1 58 594-657 62-120 (141)
27 3ro3_A PINS homolog, G-protein 51.3 1.8E+02 0.0063 28.3 14.6 30 1570-1599 5-34 (164)
28 2cm5_A Rabphilin-3A; protein t 51.1 11 0.00038 40.3 4.3 59 593-657 74-132 (166)
29 3sf4_A G-protein-signaling mod 51.0 1.3E+02 0.0045 35.1 14.3 56 1661-1716 307-362 (406)
30 4a1s_A PINS, partner of inscut 50.5 2.7E+02 0.0092 32.8 17.1 120 1550-1716 62-181 (411)
31 2bwq_A Regulating synaptic mem 50.3 11 0.00037 38.3 3.9 62 592-657 54-116 (129)
32 4a1s_A PINS, partner of inscut 48.4 1.3E+02 0.0044 35.7 13.7 53 1662-1714 304-356 (411)
33 2ep6_A MCTP2 protein; beta san 47.7 12 0.00039 38.4 3.6 55 594-657 46-100 (133)
34 1wfj_A Putative elicitor-respo 47.4 10 0.00036 38.8 3.2 54 594-656 43-97 (136)
35 3m7f_B E3 ubiquitin-protein li 47.0 17 0.00058 39.2 5.0 56 593-657 46-101 (176)
36 1v27_A Regulating synaptic mem 46.8 13 0.00045 38.2 3.9 61 593-657 58-119 (141)
37 3kwu_A MUNC13-1; calcium bindi 46.8 27 0.00091 36.3 6.4 62 594-658 50-116 (148)
38 1a25_A CALB, protein kinase C 46.3 14 0.00047 38.7 4.0 58 593-657 68-125 (149)
39 2cjt_A UNC-13 homolog A, MUNC1 45.7 27 0.00092 36.0 6.1 52 596-657 35-87 (131)
40 2cjs_A UNC-13 homolog A, MUNC1 45.4 28 0.00097 37.5 6.4 52 596-657 44-96 (167)
41 2enp_A B/K protein; C2 type 1, 45.4 8.8 0.0003 40.1 2.3 58 594-657 69-126 (147)
42 1w9c_A CRM1 protein, exportin 45.1 4.7E+02 0.016 31.2 17.3 101 1369-1469 94-198 (321)
43 3fbk_A RGS3, RGP3, regulator o 44.5 15 0.00051 38.7 3.9 59 593-657 63-121 (153)
44 2z0u_A WW domain-containing pr 44.2 8 0.00027 41.3 1.8 58 594-657 82-139 (155)
45 3rdl_A Protein kinase C alpha 44.1 18 0.00063 36.8 4.5 56 594-656 54-109 (137)
46 2b3r_A Phosphatidylinositol-4- 44.0 11 0.00038 38.8 2.8 59 593-657 56-115 (134)
47 4gcn_A Protein STI-1; structur 43.9 1.6E+02 0.0056 29.1 11.6 48 1668-1715 49-97 (127)
48 2q3x_A Regulating synaptic mem 43.6 19 0.00067 38.7 4.8 57 593-657 68-124 (171)
49 3qww_A SET and MYND domain-con 43.4 4.7E+02 0.016 32.3 17.9 81 1568-1694 335-415 (433)
50 2fk9_A Protein kinase C, ETA t 41.9 14 0.00049 39.6 3.3 52 595-656 74-125 (157)
51 2dmg_A KIAA1228 protein; beta- 41.1 8.6 0.00029 39.8 1.4 61 593-657 60-120 (142)
52 3ulq_A Response regulator aspa 39.1 3.7E+02 0.013 31.6 15.7 28 1573-1600 183-210 (383)
53 3u3w_A Transcriptional activat 38.2 4.8E+02 0.016 29.4 19.5 117 1550-1713 89-208 (293)
54 3q15_A PSP28, response regulat 37.4 3.7E+02 0.013 31.6 15.4 117 1568-1717 256-372 (378)
55 1gmi_A Protein kinase C, epsil 37.4 18 0.00061 37.2 3.1 51 596-656 53-103 (136)
56 2r83_A Synaptotagmin-1; C2A-C2 36.8 27 0.00091 40.5 4.9 58 594-657 55-112 (284)
57 2r83_A Synaptotagmin-1; C2A-C2 35.4 32 0.0011 39.8 5.3 59 593-657 187-245 (284)
58 2wxf_A Phosphatidylinositol-4, 32.6 36 0.0012 46.5 5.6 71 603-673 262-340 (940)
59 3pyc_A E3 ubiquitin-protein li 31.7 38 0.0013 34.4 4.5 57 593-656 39-95 (132)
60 2nq3_A Itchy homolog E3 ubiqui 31.5 42 0.0014 36.3 5.0 54 593-656 68-121 (173)
61 3u3w_A Transcriptional activat 30.3 3.8E+02 0.013 30.2 13.4 96 1573-1714 154-249 (293)
62 1rh8_A Piccolo protein; beta-s 29.7 10 0.00034 39.3 -0.4 57 595-657 66-123 (142)
63 2qk2_A LP04448P; mini spindles 28.7 6.2E+02 0.021 27.8 16.1 75 1390-1468 54-128 (242)
64 4fdd_A Transportin-1; heat rep 26.8 1.2E+03 0.042 30.7 20.4 119 1364-1492 601-721 (852)
65 3nf1_A KLC 1, kinesin light ch 26.7 6.7E+02 0.023 27.5 14.7 33 1571-1603 108-140 (311)
66 2bpt_A Importin beta-1 subunit 26.5 1.2E+03 0.041 30.4 21.1 117 1367-1492 574-690 (861)
67 3edt_B KLC 2, kinesin light ch 26.4 6.3E+02 0.022 27.1 15.2 33 1571-1603 82-114 (283)
68 4hat_C Exportin-1; heat repeat 26.2 8E+02 0.027 33.8 17.4 104 1368-1471 775-882 (1023)
69 2vgl_A Adaptor protein complex 25.9 5.9E+02 0.02 32.9 15.3 202 1366-1610 307-510 (621)
70 2qfc_A PLCR protein; TPR, HTH, 25.4 3.5E+02 0.012 30.6 11.8 99 1570-1714 151-249 (293)
71 3qwp_A SET and MYND domain-con 25.0 7.5E+02 0.026 30.3 15.4 101 1568-1714 324-426 (429)
72 3ulq_A Response regulator aspa 24.8 8.7E+02 0.03 28.2 16.3 98 1570-1713 139-236 (383)
73 3nf1_A KLC 1, kinesin light ch 24.4 7.3E+02 0.025 27.2 15.2 34 1570-1603 65-98 (311)
74 3gjx_A Exportin-1; transport, 24.2 1.3E+03 0.044 32.0 18.7 101 1368-1468 801-905 (1073)
75 3m1i_C Exportin-1; heat repeat 23.4 2.5E+02 0.0085 38.8 11.7 102 1368-1469 775-880 (1049)
76 1w63_A Adapter-related protein 22.9 7.7E+02 0.026 31.6 15.6 200 1366-1609 291-490 (618)
77 1dqv_A Synaptotagmin III; beta 21.7 48 0.0017 38.8 3.4 55 594-654 56-110 (296)
78 4b4t_P 26S proteasome regulato 21.2 1.2E+03 0.041 28.6 17.1 33 1568-1600 212-244 (445)
79 1xqr_A HSPBP1 protein; armadil 20.7 3.2E+02 0.011 32.0 10.2 112 1392-1513 124-237 (296)
80 2qfc_A PLCR protein; TPR, HTH, 20.5 9.2E+02 0.031 26.9 17.2 48 1551-1598 90-139 (293)
No 1
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=100.00 E-value=8.7e-94 Score=894.44 Aligned_cols=423 Identities=41% Similarity=0.707 Sum_probs=391.7
Q ss_pred hhccCChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCC
Q psy17025 1564 KGYQNSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLS 1643 (2010)
Q Consensus 1564 ~~Y~~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~ 1643 (2010)
++|+++||||++||++||+.|.+++||+|||+|++|+||||||||... +.+|++|.+|.+|+||+++|+++++|.
T Consensus 1 ~~Y~~~pdl~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~---~~~~~~~~~f~~i~p~~~ee~~~~~d~-- 75 (428)
T 2wm9_A 1 KSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRK---GVFRQGCTAFRVITPNIDEEASMMEDV-- 75 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHT---TSSSCCGGGGTTTCGGGGGGC--------
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhc---CCCCCCHHHHhhcCCCccchhcccccc--
Confidence 589999999999999999999999999999999999999999999875 478999999999999999999888765
Q ss_pred ccccCccCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHh--cCCc
Q psy17025 1644 PEQEGVCLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAYVKLYQI--QGKR 1721 (2010)
Q Consensus 1644 ~~~~g~~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y~~I~~~--~~~R 1721 (2010)
| +.+.+||+++++++|++||++|++|++||.|+++|++|+|+||+++||++||++|++++++|++|.++ .++|
T Consensus 76 ----g-~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~~I~~~~~~~~R 150 (428)
T 2wm9_A 76 ----G-MQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRR 150 (428)
T ss_dssp --------CCSSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ----C-CCccccCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 2 34578999999999999999999999999999999999999999999999999999999999999984 5799
Q ss_pred cccceEEEEEecccCC-CCCCceEEecCCCCCChHHHHHHHHHHHHhhhCCccEEEcccCCccCCCCCCCCccEEEEEEe
Q psy17025 1722 VFGTYFRVGFYGMKFG-DLNNEEFIYKEPTLTKLPEIFSRLENFYAERFGVNNIMIIKDSNPVDTMSLDPDIAYIQITYV 1800 (2010)
Q Consensus 1722 ~~~~YfRV~FyG~~F~-~l~~kefIYre~~~t~L~ef~~rL~~~y~~~~G~~~v~ii~ds~~vd~~~ld~~~~yIQIt~V 1800 (2010)
++|+||||+|||.+|| +++||+|||||+++|+|++|++||+++||++||+++++||+++++||+++++++++|||||+|
T Consensus 151 ~~~~YfrV~fyG~~fp~~l~~kefIYr~~~~e~l~~f~~rl~~~yp~~~g~~~~~ii~~s~~~~~~~l~~~~~yiqIt~V 230 (428)
T 2wm9_A 151 LLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHV 230 (428)
T ss_dssp CCCEEEEEEEECHHHHGGGTTCEEEEEESTTCCHHHHHHHHHHHHHHHHCGGGEEEECCCSCCCGGGSCTTSEEEEEEEE
T ss_pred cCceeEEEEEEcCCCChhccCCeEEEeCCCCccHHHHHHHHHHhCccccCccceeeccCCCCCChhhcCCCCcEEEEEEE
Confidence 9999999999999866 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCcccccccccceeecccCcEEEeeeeecCCCCCCccccceEEEEEEEeCcCCCCceeEEEEecceeEEeCHHHHH
Q psy17025 1801 EPYFENYEKRYRETHFEQNFNIKTFMYATPFTTTGKAHGELHEQYKRKTILTTATHFPYVKTRIQVVDRKQIILTPIEVA 1880 (2010)
Q Consensus 1801 ~P~~~~~e~~~r~t~f~r~~ni~~F~f~tPft~~gk~~g~~~eq~krrTiltt~~~FP~i~~R~~Vv~~~~~~lsPIE~A 1880 (2010)
+|+++..++++|++.|++++|+++|+|++||+++||++|++++||+|||||+|+++||++++|++|+++++++|||||+|
T Consensus 231 ~P~~~~~~~~~~~~~f~~~~~v~~F~~~~pf~~~~k~~g~~~~~w~~rti~~t~~~fP~il~R~~V~~~~~~~lsPiE~A 310 (428)
T 2wm9_A 231 IPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVA 310 (428)
T ss_dssp EECCCHHHHHHCCSTGGGSSSEEEEEEEEEECTTSCSSCCTTTCEEEEEEEEEEEEESCSSSEEEEEEEEEEEECHHHHH
T ss_pred EecCCccccccccccceecCCcCeEEEecceecCCCCCCcHHhheEEEEEEEecCCCCCceeeeEEEEEEEEEECHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHhhcceeccccccchHHHHHhccCCCcCCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy17025 1881 IEDIQKKTQELSNSIRQEPPDPKILQMVLQGCIGTTVNQGPMEMAVVFLSDLLDGEKSPTKLQNKLRLCFKDFSKKCCDA 1960 (2010)
Q Consensus 1881 Ie~i~~K~~eL~~~~~~~~~d~~~Lq~~LqGsV~a~VNgGp~~ya~~FL~~~~~~~~~~~~~~~kLr~~f~~f~~~c~~a 1960 (2010)
|++|++|+++|.+++.+.++|++.|||+|||+|+++|||||++|+++||++.+. ..++.+++++||.+|++|+..|++|
T Consensus 311 ie~i~~k~~eL~~~~~~~~~d~~~L~~~LqG~v~~~Vn~G~~~y~~~Fl~~~~~-~~~~~~~v~~Lk~~~~~~~~~~~~~ 389 (428)
T 2wm9_A 311 IDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNT-KRYPDNKVKLLKEVFRQFVEACGQA 389 (428)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHSCSSSCCTHHHHHHHSCC--------CTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccCccCCcHHHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998755 4455567999999999999999999
Q ss_pred HHHhcccCCcchHHHHHHHHHHHHHHHHhhhcccccc
Q psy17025 1961 LRKNKTLIGPDQKDYQKELERNYHRFTDKLMPLITFK 1997 (2010)
Q Consensus 1961 L~~~~~li~~d~~~~h~~Le~~f~~l~~~l~~~~~~~ 1997 (2010)
|.+|+++|+++|++||++|+++|++|+++|++++|++
T Consensus 390 L~lh~~~~~~~~~~~h~~le~~f~~l~~~l~~~~~~~ 426 (428)
T 2wm9_A 390 LAVNERLIKEDQLEYQEEMKANYREMAKELSEIMHEQ 426 (428)
T ss_dssp HHHHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHhhhhCChhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999975
No 2
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=100.00 E-value=8.7e-83 Score=794.55 Aligned_cols=415 Identities=19% Similarity=0.266 Sum_probs=355.3
Q ss_pred hHhhhhhcCCHHHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCC
Q psy17025 1542 TVKMKEFQEDPEMLLDLMYRIAKGYQ--NSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPL 1619 (2010)
Q Consensus 1542 t~~m~e~~~DpE~l~dl~~~lA~~Y~--~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~ 1619 (2010)
.++|.++.+|++|. ++++|+++|+ ++||||++||++||++|.+++||+|||+|++++|+ .+.|.+ ...+|
T Consensus 3 ~~~~~~e~~d~r~~--~~~~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~----l~~w~~-~~~~~- 74 (436)
T 2yin_A 3 CGDMTDESKDNRMS--CTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTW----LLKWSD-EQCAS- 74 (436)
T ss_dssp -------CHHHHHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCSSC-CC----
T ss_pred ccccCccccchHHH--HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH----HhCCCc-cccCc-
Confidence 46788888899887 5679999997 67999999999999999999999999999996654 477742 22221
Q ss_pred ccccccccCccchhhcccCCCCCCccccCccCCCccCHHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh-hcH
Q psy17025 1620 GAVSLEFISPNCLEECAVSDDVLSPEQEGVCLGKDFTESGFV-CLLEHAASSFYTAGMYETVNNVYKVIFPIVEKS-RDY 1697 (2010)
Q Consensus 1620 ~~~~F~~I~pni~~E~~~~~d~~~~~~~g~~~~~~fte~~l~-~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~-~dy 1697 (2010)
.+..+ | ....+|+++++ .||++||++|++|++||.|+++||+|+|+||++ +||
T Consensus 75 ----------~~~~~-------------~--~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~Dy 129 (436)
T 2yin_A 75 ----------QVMQT-------------G--QQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDY 129 (436)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCH
T ss_pred ----------ccccC-------------C--CCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 0 01235676655 799999999999999999999999999999996 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccceEEEEEecccCCC-CCCceEEecCCCCCChHHHHHHHHHHHHhhhCCccEEE
Q psy17025 1698 KKLSNIHSKLHDAYVKLYQIQGKRVFGTYFRVGFYGMKFGD-LNNEEFIYKEPTLTKLPEIFSRLENFYAERFGVNNIMI 1776 (2010)
Q Consensus 1698 ~kLs~i~~~la~~y~~I~~~~~~R~~~~YfRV~FyG~~F~~-l~~kefIYre~~~t~L~ef~~rL~~~y~~~~G~~~v~i 1776 (2010)
++||++|++++++|++|+++ .|++|+||||||||.+||+ ++||+|||||+++++|++|++||++.||. ...|
T Consensus 130 ~~Ls~~~~~~a~~y~~I~~~--~R~~~~YFRV~FyG~~Fp~~l~~kefIYr~~~~erl~~f~~rl~~~~p~-----a~~i 202 (436)
T 2yin_A 130 ELLSQNLIQQAKFYESIMKI--LRPKPDYFAVGYYGQGFPSFLRNKVFIYRGKEYERREDFQMQLMTQFPN-----AEKM 202 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--CCCCCCEEEEEEESTTSCTTTTTEEEEEECCTTCCHHHHHHHHHHHCSS-----CEEC
T ss_pred HHHHHHHHHHHHHHHHHHhc--ccccceeeEEEEECCCCCchhcCceEEEeCCCcccHHHHHHHHHHhCCC-----CEEe
Confidence 99999999999999999976 7999999999999999996 99999999999999999999999999983 2445
Q ss_pred cccCCccCCCCCCCCccEEEEEEeeeccCCcc------cccccccceeecccCcEEEeeeeecCC-CCCCccccceEEEE
Q psy17025 1777 IKDSNPVDTMSLDPDIAYIQITYVEPYFENYE------KRYRETHFEQNFNIKTFMYATPFTTTG-KAHGELHEQYKRKT 1849 (2010)
Q Consensus 1777 i~ds~~vd~~~ld~~~~yIQIt~V~P~~~~~e------~~~r~t~f~r~~ni~~F~f~tPft~~g-k~~g~~~eq~krrT 1849 (2010)
++++.+++. ..+++++|||||+|+|+++..+ ++++++.|++++|+++|+|++||+++| +++|++++||+|||
T Consensus 203 ~~~s~~~~~-~~~~~~~yiqIt~V~P~~d~~~~~~~~~v~~~i~~f~~~~~~~~F~~~~pf~~~~~~~~~~~~~~w~~rT 281 (436)
T 2yin_A 203 NTTSAPGDD-VKNAPGQYIQCFTVQPVLDEHPRFKNKPVPDQIINFYKSNYVQRFHYSRPVRRGTVDPENEFASMWIERT 281 (436)
T ss_dssp SCCSCCCHH-HHHCSSCEEEEEEEEEECCCCGGGSSSCCCHHHHHHHHHSSEEEEEEEEEEECSCCCSSCHHHHEEEEEE
T ss_pred ccCCCCccc-cccCCCcEEEEEEeeeecCcchhhccCCCCccccchhhccCCceEEEeeeeeCCCCCCCchHHhheEEEE
Confidence 556655554 4467799999999999998754 467889999999999999999999985 46899999999999
Q ss_pred EEEeCcCCCCceeEEEEecceeEEeCHHHHHHHHHHHHHHHHHHHHhc----CCCChhhHHHhhcceeccccccchHHHH
Q psy17025 1850 ILTTATHFPYVKTRIQVVDRKQIILTPIEVAIEDIQKKTQELSNSIRQ----EPPDPKILQMVLQGCIGTTVNQGPMEMA 1925 (2010)
Q Consensus 1850 iltt~~~FP~i~~R~~Vv~~~~~~lsPIE~AIe~i~~K~~eL~~~~~~----~~~d~~~Lq~~LqGsV~a~VNgGp~~ya 1925 (2010)
||||+++|||+++|++|+++++++||||||||++|++|+++|.+++++ .++|++.|||+|||+|+++|||||++|+
T Consensus 282 iltt~~~fP~ilrR~~V~~~~~~~lsPiE~Aie~i~~k~~eL~~~i~~~~~~~~~~~~~Lq~~LqG~V~~~VngG~~~y~ 361 (436)
T 2yin_A 282 SFVTAYKLPGILRWFEVVHMSQTTISPLENAIETMSTANEKILMMINQYQSDETLPINPLSMLLNGIVDPAVMGGFAKYE 361 (436)
T ss_dssp EEEEEEEESSSSSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCSHHHHHHHHHHHCCSSSCCTHHHH
T ss_pred EEEECCCCCcceeeeeEeeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHhcccccccccccHHHHH
Confidence 999999999999999999999999999999999999999999999874 4578999999999999999999999999
Q ss_pred HhccCCCcCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHhhhcccccc
Q psy17025 1926 VVFLSDLLDG-EKSPTKLQNKLRLCFKDFSKKCCDALRKNKTLIGPDQKDYQKELERNYHRFTDKLMPLITFK 1997 (2010)
Q Consensus 1926 ~~FL~~~~~~-~~~~~~~~~kLr~~f~~f~~~c~~aL~~~~~li~~d~~~~h~~Le~~f~~l~~~l~~~~~~~ 1997 (2010)
++||++.+.. .+...+++++||++|.+|+..|++||.+|+++|++++++||++|+++|+.|+++|++.+|.+
T Consensus 362 ~~Fl~~~~~~~~p~~~~~v~~Lk~~~~~~~~~l~~~L~lh~~li~~~~~~~h~~L~~~f~~l~~~le~~yg~~ 434 (436)
T 2yin_A 362 KAFFTEEYVRDHPEDQDKLTHLKDLIAWQIPFLGAGIKIHEKRVSDNLRPFHDRMEECFKNLKMKVEKEYGVR 434 (436)
T ss_dssp HHHCSHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhcCchhhhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999985431 22223668999999999999999999999999999999999999999999999999999976
No 3
>3vhl_A Dedicator of cytokinesis protein 8; signal transduction, guanine nucleotide exchang factor, GTPA signaling protein; 2.08A {Mus musculus}
Probab=100.00 E-value=1.7e-68 Score=629.24 Aligned_cols=281 Identities=57% Similarity=1.008 Sum_probs=257.2
Q ss_pred cCCccccceEEEEEecccCCCCCCceEEecCCCCCChHHHHHHHHHHHHhhhCCccEEEcccCCccCCCCCCCCccEEEE
Q psy17025 1718 QGKRVFGTYFRVGFYGMKFGDLNNEEFIYKEPTLTKLPEIFSRLENFYAERFGVNNIMIIKDSNPVDTMSLDPDIAYIQI 1797 (2010)
Q Consensus 1718 ~~~R~~~~YfRV~FyG~~F~~l~~kefIYre~~~t~L~ef~~rL~~~y~~~~G~~~v~ii~ds~~vd~~~ld~~~~yIQI 1797 (2010)
.|+|++|+||||+|||.+||+++||+|||||+++++|++|++||+++||++||+++|+||+++++||.+++|++++||||
T Consensus 8 ~~~R~~~~YFRV~FyG~~Fp~lr~KefIYrg~~~e~l~~f~~Rl~~~yp~~~G~~~a~ii~~s~~~~~~~~~~~~~yiqI 87 (288)
T 3vhl_A 8 DHKRMFGTYFRVGFYGSRFGDLDEQEFVYKEPAITKLPEISHRLEGFYGQCFGAEFVEVIKDSTPVDKTKLDPNKAYIQI 87 (288)
T ss_dssp -----CCEEEEEEEESGGGGGGTTCEEEEEESSSCCHHHHHHHHHHHHHHHHCGGGEEEECSCSCCCGGGSCTTSEEEEE
T ss_pred CCCccCceeEEEEEECCCCccccCcEEEEcCCCCccHHHHHHHHHHhCccccCCcceEEecCCCCCChhhcCCCCcEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccCCcccccccccceeecccCcEEEeeeeecCCCCCCccccceEEEEEEEeCcCCCCceeEEEEecceeEEeCHH
Q psy17025 1798 TYVEPYFENYEKRYRETHFEQNFNIKTFMYATPFTTTGKAHGELHEQYKRKTILTTATHFPYVKTRIQVVDRKQIILTPI 1877 (2010)
Q Consensus 1798 t~V~P~~~~~e~~~r~t~f~r~~ni~~F~f~tPft~~gk~~g~~~eq~krrTiltt~~~FP~i~~R~~Vv~~~~~~lsPI 1877 (2010)
|+|+|+++..+++++++.|++++|+++|+|++||+++|+++|++++||+|||||||+++||++++|++|+++++++||||
T Consensus 88 t~V~P~~~~~~v~~~i~~f~~~~nv~~F~~~~pf~k~g~~~~~~~~~w~ertiltt~~~fP~ilrR~eV~~~~~v~lSPi 167 (288)
T 3vhl_A 88 TFVEPYFDEYEMKDRVTYFEKNFNLRRFMYTTPFTLEGRPRGELHEQHRRNTVLTTMHAFPYIKTRIRVSQKEEFVLTPI 167 (288)
T ss_dssp EEEEECCCHHHHC---------CCEEEEEEEEEECTTSSSCCCGGGCEEEEEEEEEEEEESCSSSEEEEEEEEEEEECHH
T ss_pred EEEEEeccccccchhhceeeeccCcceEEEeeeEecCCCCCcchhhhEEEEEEEEEcCCCCCceEEEEEEEEeEEEEchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhhHHHhhcceeccccccchHHHHHhccCCCcCCCCCchHHHHHHHHHHHHHHHHH
Q psy17025 1878 EVAIEDIQKKTQELSNSIRQEPPDPKILQMVLQGCIGTTVNQGPMEMAVVFLSDLLDGEKSPTKLQNKLRLCFKDFSKKC 1957 (2010)
Q Consensus 1878 E~AIe~i~~K~~eL~~~~~~~~~d~~~Lq~~LqGsV~a~VNgGp~~ya~~FL~~~~~~~~~~~~~~~kLr~~f~~f~~~c 1957 (2010)
||||++|++||+||.+++.+.++|++.|||+|||+|+++|||||.+||++||++.++ ++...+++++||.+|.+|+.+|
T Consensus 168 E~Aie~i~~k~~eL~~~~~~~~~d~~~L~~~L~G~Vd~~VngG~~~y~~~Fl~~~~~-~~~~~~~v~~Lk~~~~~~~~~l 246 (288)
T 3vhl_A 168 EVAIEDMKKKTLQLAVATHQEPPDAKMLQMVLQGSVGATVNQGPLEVAQVFLAEIPA-DPKLYRHHNKLRLCFKEFIMRC 246 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHCCSSSCCHHHHHHHHTSSCCS-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHHHHHhhheEeccccccCHHHHHHHHcCCccc-ChhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999665 4445578999999999999999
Q ss_pred HHHHHHhcccCCcchHHHHHHHHHHHHHHHHhhhccccccccC
Q psy17025 1958 CDALRKNKTLIGPDQKDYQKELERNYHRFTDKLMPLITFKHID 2000 (2010)
Q Consensus 1958 ~~aL~~~~~li~~d~~~~h~~Le~~f~~l~~~l~~~~~~~~~~ 2000 (2010)
++||.+|+++|++++++||++|+++|+.|+++|+++++++ ||
T Consensus 247 ~~~L~lh~~li~~~~~~~h~~L~~~F~~l~~~l~~l~~~~-~~ 288 (288)
T 3vhl_A 247 GEAVEKNRRLITAEQREYQQELKKNYNKLRDSLRPMIERK-IP 288 (288)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC
Confidence 9999999999999999999999999999999999999987 65
No 4
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=100.00 E-value=3.2e-41 Score=375.60 Aligned_cols=185 Identities=21% Similarity=0.234 Sum_probs=137.7
Q ss_pred ccCCCcccCCcccccceEEEecceeeecCC-CCCcceEEEEEEEEeCCCCCCccCceeCCCCCCCCceEEEEEEeeecCC
Q psy17025 527 EFPLRETNLPHYLYRNLLFVYPKEINFTGR-TGSARNLTVKVQLMYGETPESALPAIFGKSSCPEFTTEAYTSVIYHNKC 605 (2010)
Q Consensus 527 eFp~~~~~~P~~~y~N~LYVyP~~l~f~~~-k~~aRNI~v~V~l~~~d~~~~~l~~Iygk~~~~~f~~~~~t~V~yHnk~ 605 (2010)
-||. +++| ++|||+|||||.+++|+++ |+++|||+|+||||++| +.....||||++|. ++.++++|+|+|||++
T Consensus 15 ~fpe--vI~P-gd~RNdLYVtl~~g~F~~~~k~~aRNIeV~vevr~~~-G~~i~~~I~~~sg~-~~~se~~S~V~YHnk~ 89 (220)
T 3l4c_A 15 VPRG--SHMP-GDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDED-GKRLEHVIFPGAGD-EAISEYKSVIYYQVKQ 89 (220)
T ss_dssp --------------CEEEEEEEEEEECCCSSSSSCCCEEEEEEEEETT-SCBCCSCEECTTCC-SCBSCEECCCCTTCSS
T ss_pred cccc--cccC-CCCcccEEEEeeEeEECCCCCCCcceEEEEEEEEcCC-CCCcccCEEcCCCC-CCceeEEEEEEEcCCC
Confidence 4777 9999 5999999999999999985 58999999999999864 33345699998765 4799999999999999
Q ss_pred CCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecccC-Ce-eecCcEEeeEeecC-----CCCC
Q psy17025 606 PYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLKD-GQ-LQLNDFCLPVTLEA-----PPPN 678 (2010)
Q Consensus 606 P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~~-g~-l~~ge~~LpV~~~~-----~p~~ 678 (2010)
|.|+|||||+||++++++|||+||||||||++|+++ .|+||||||||||++ |+ |++|+|+||||+.+ .+..
T Consensus 90 P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk--~E~pfg~a~lPL~~~dG~~L~DG~H~L~vyk~d~~~~~~~~~ 167 (220)
T 3l4c_A 90 PRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDK--SEKIFALAFVKLMRYDGTTLRDGEHDLIVYKAEAKKLEDAAT 167 (220)
T ss_dssp CCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCC--CCCEEEEEEEESBCTTSCBCCSEEEEEEEEECCHHHHTCHHH
T ss_pred CCceEeEEEeeChhhcCCeEEEEEEEEecccccccc--cCCeeEEEEEEcccCCCcEEccCCEEEEEEEcccccccchhh
Confidence 999999999999999999999999999999988774 789999999999987 66 89999999999963 3446
Q ss_pred CcccCCC---C-----CC----CC-CceecCCcceEEEEEEEeecccCCchHH
Q psy17025 679 YSYITPD---V-----LL----PG-LKWVDNHKSIFNVVLSAASSIHPQDTHI 718 (2010)
Q Consensus 679 Y~~l~~~---~-----~~----p~-~kwvd~~K~~F~v~t~~vSTv~tqD~~L 718 (2010)
|+.|+.. . .. .. .......|..|.|+|.+|||++|||..|
T Consensus 168 yl~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~f~i~t~lCSTkLTQNvdl 220 (220)
T 3l4c_A 168 YLSLPSTKAELEEKGHSATGKSMQSLGSCTISKDSFQISTLVCSTKLTQNVDL 220 (220)
T ss_dssp HTTSCCBHHHHHTC-------CCCEETTEEEEEEEEEEEEEEC----------
T ss_pred hccCCCchhhhccccccccccccccccccCCCcCeEEEEeEEEecccccCCCC
Confidence 8777652 0 00 00 0112357999999999999999999765
No 5
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=79.88 E-value=5.9 Score=41.13 Aligned_cols=59 Identities=15% Similarity=0.030 Sum_probs=46.1
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|..++.+|.|+|++.+.+|..-.....|.|+.|+..-- .....+|.+.+||-.
T Consensus 59 ~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~------~~dd~lG~~~i~l~~ 117 (138)
T 1wfm_A 59 VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF------SRHSVAGELRLGLDG 117 (138)
T ss_dssp EEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSS------CTTSCSEEEEEESSS
T ss_pred ccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCC------CCCcEEEEEEEEccc
Confidence 34678888899999999999999987666677999999985321 123588999999764
No 6
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=70.72 E-value=35 Score=39.66 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=18.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q psy17025 1666 HAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLH 1708 (2010)
Q Consensus 1666 ~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la 1708 (2010)
.....+.+ +.|+.|+..|+..+.+++...+....+.++..++
T Consensus 121 ~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 121 RAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 33344444 5555555555555555554333333333333333
No 7
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=67.00 E-value=39 Score=33.50 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q psy17025 1663 LLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAYVKL 1714 (2010)
Q Consensus 1663 ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y~~I 1714 (2010)
.+...+..+...+.|+.|+..++..+...+...+-...+.++..++.+|...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 3444555666777888888888888888877656556666777777666544
No 8
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=65.27 E-value=47 Score=38.58 Aligned_cols=49 Identities=4% Similarity=-0.102 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q psy17025 1663 LLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAY 1711 (2010)
Q Consensus 1663 ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y 1711 (2010)
.+..+...+.+-+.|+.|+..|+..+.+|....++...+.++..++.+|
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 126 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4444555566666666666666666666665555555555555555555
No 9
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=64.16 E-value=58 Score=37.45 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCCccccCc
Q psy17025 1570 PNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQEGV 1649 (2010)
Q Consensus 1570 PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~~~~~g~ 1649 (2010)
++--+.++.+.+..+...|+|.||..|+..++.+. +-+ ++
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~-~~~---~~------------------------------------ 72 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQ-KKA---GN------------------------------------ 72 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHH-HHT---TC------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHh---CC------------------------------------
Confidence 34445566666778888999999999998765441 110 00
Q ss_pred cCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q psy17025 1650 CLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAYVK 1713 (2010)
Q Consensus 1650 ~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y~~ 1713 (2010)
..+....+..+...+.+.+.|+.|+..|+..+.++....++...+.++..++.+|..
T Consensus 73 -------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 129 (292)
T 1qqe_A 73 -------EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN 129 (292)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 011223455566667777888888888888888888777777777777777777755
No 10
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=63.94 E-value=3.2 Score=43.19 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=44.3
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|..++.+|.|++++.+.+|..-..+..|.|+.|+-..-. ....+|.+.+||-.
T Consensus 70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~------~~~~iG~~~i~l~~ 127 (143)
T 3f04_A 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS------KHDIIGEFKVPMNT 127 (143)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS------CCEEEEEEEEEGGG
T ss_pred cEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCC------CCceEEEEEEEHHH
Confidence 35678888899999999999998865445578999999843321 23589999999853
No 11
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=60.15 E-value=8.4 Score=40.53 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=46.5
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|..++.+|.|+|++.+.++...-....|.|+.|+-.-- .....+|-+.+||-.
T Consensus 67 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~------~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 67 SKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERG------SRNEVIGRLVLGATA 125 (153)
T ss_dssp EEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTT------SCCEEEEEEEESTTC
T ss_pred ceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCC------CCCcEEEEEEECCCC
Confidence 45678888889999999999999987666678999999984311 123589999999865
No 12
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=59.72 E-value=2.2e+02 Score=31.77 Aligned_cols=120 Identities=8% Similarity=-0.002 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCc
Q psy17025 1550 EDPEMLLDLMYRIAKGYQNSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISP 1629 (2010)
Q Consensus 1550 ~DpE~l~dl~~~lA~~Y~~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~p 1629 (2010)
.|.+.-+..+-+......+.++.....+..|+..+...|++.+|..++..+..+. +-. ++
T Consensus 19 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~---~~---------------- 78 (338)
T 3ro2_A 19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-RTI---GD---------------- 78 (338)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHH---TC----------------
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hcc---cc----------------
Confidence 3444444444333343446677777888899999999999999988887554331 110 00
Q ss_pred cchhhcccCCCCCCccccCccCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q psy17025 1630 NCLEECAVSDDVLSPEQEGVCLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHD 1709 (2010)
Q Consensus 1630 ni~~E~~~~~d~~~~~~~g~~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~ 1709 (2010)
.......+...+..+..-+.|+.|+..++..+.+.+...+-...+.++..++.
T Consensus 79 ---------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 131 (338)
T 3ro2_A 79 ---------------------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 131 (338)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 01122344445666777889999999999999999987777778889999999
Q ss_pred HHHHHHH
Q psy17025 1710 AYVKLYQ 1716 (2010)
Q Consensus 1710 ~y~~I~~ 1716 (2010)
+|....+
T Consensus 132 ~~~~~~~ 138 (338)
T 3ro2_A 132 VYHAKGK 138 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHcCc
Confidence 8877765
No 13
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=58.89 E-value=8.4 Score=39.74 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=45.4
Q ss_pred eEEEEEEeeecCCCCcceeEEEe-cCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQ-LPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~-LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..+.|.|..++.+|.|+|++.+. +|..--....|.|+.|+-.--. ....+|.+.+||-.
T Consensus 58 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~------~~~~lG~~~i~l~~ 117 (138)
T 1ugk_A 58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS------RDDIIGEVLIPLSG 117 (138)
T ss_dssp SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC------CCCCCEEEEEECTT
T ss_pred ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCC------CCcEEEEEEEehhH
Confidence 45678888899999999999995 8866556678999999843211 23489999999854
No 14
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=58.34 E-value=11 Score=39.46 Aligned_cols=57 Identities=26% Similarity=0.366 Sum_probs=43.9
Q ss_pred ceEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 592 TTEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 592 ~~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...+.|.|...+.+|.|+|++.+.++. ....|.|+.|+-..- .....+|.+.+||-.
T Consensus 57 ~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~l~~~V~d~d~~------~~d~~iG~~~i~l~~ 113 (153)
T 3b7y_A 57 LTSVQTKTIKKSLNPKWNEEILFRVHP---QQHRLLFEVFDENRL------TRDDFLGQVDVPLYP 113 (153)
T ss_dssp EEEEECCCCSSCSSCCCCEEEEEEECT---TTCEEEEEEEECCSS------SCCEEEEEEEEECCS
T ss_pred ceeeeCccccCCCCCCCCCEEEEEecC---CCCEEEEEEEECCCC------cCCCeeEEEEEEHHH
Confidence 356678888889999999999998874 357899999985321 124589999999853
No 15
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=57.49 E-value=1.1e+02 Score=34.38 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q psy17025 1662 CLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAYVKLY 1715 (2010)
Q Consensus 1662 ~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y~~I~ 1715 (2010)
..+...+..+...+.|+.|+..++..+.......+-...+.++..++.+|...-
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 445556666777888999999999998888876666666777777777776543
No 16
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=57.38 E-value=9.2 Score=39.99 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=46.1
Q ss_pred ceEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 592 TTEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 592 ~~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.....|.|..++.+|.|.+++.+.+|..-....-|.|+.|+-.--. ....+|-+.+||-.
T Consensus 60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~------~~~~iG~~~i~l~~ 119 (148)
T 3fdw_A 60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFG------RNTFLGEAEIQMDS 119 (148)
T ss_dssp GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGG------CEEEEEEEEEEHHH
T ss_pred cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCc------CCcEEEEEEEEccc
Confidence 3456788888899999999999999876656677999999743221 23589999999853
No 17
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=56.37 E-value=4.8 Score=42.50 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=43.7
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|..++.+|.|+|++.+.+|..-.....|.|+.|+-..-. ....+|.+.+||-.
T Consensus 78 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~------~~~~iG~~~i~l~~ 135 (152)
T 1rsy_A 78 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS------KHDIIGEFKVPMNT 135 (152)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS------CCEEEEEEEEEGGG
T ss_pred eEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCC------CCcEEEEEEEEchh
Confidence 34677888899999999999988754334578999999853211 24589999999864
No 18
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=56.20 E-value=8.4 Score=40.84 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=45.4
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|...+.+|.|++++.+.+|..-.....|.|+.|+-.--. ....+|.+.+||-.
T Consensus 62 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~------~~~~iG~~~i~l~~ 120 (159)
T 1tjx_A 62 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG------KNDAIGKVFVGYNS 120 (159)
T ss_dssp EEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS------CCEEEEEEEEETTC
T ss_pred ceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCC------CCceEEEEEECCCC
Confidence 456778888899999999999999865445568999999853211 24589999999864
No 19
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=56.08 E-value=7.9 Score=39.69 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=45.5
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|..++.+|.|++++.+.+|..--.+..|.|+.|+-.-.. ....+|-+.+||-.
T Consensus 53 ~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~------~~~~lG~~~i~l~~ 111 (138)
T 3n5a_A 53 EKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLS------RNDVIGKIYLSWKS 111 (138)
T ss_dssp EEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSS------CCEEEEEEEESSSS
T ss_pred ceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCC------CCcEEEEEEEcccc
Confidence 456778888899999999999999876555678999999743211 23589999999864
No 20
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=55.99 E-value=2.8e+02 Score=35.02 Aligned_cols=102 Identities=10% Similarity=-0.004 Sum_probs=68.2
Q ss_pred CChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCCcccc
Q psy17025 1568 NSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQE 1647 (2010)
Q Consensus 1568 ~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~~~~~ 1647 (2010)
++|+ ..+-+++|+..+...|+|.||.--+..+.++.-..| +. . .|.
T Consensus 346 ~Hp~-~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l---G~-----~--------Hp~----------------- 391 (490)
T 3n71_A 346 TNLY-VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY---HH-----N--------NAQ----------------- 391 (490)
T ss_dssp TSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS---CT-----T--------CHH-----------------
T ss_pred CCHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc---CC-----C--------CHH-----------------
Confidence 4565 456778999999999999999887776554422222 10 0 011
Q ss_pred CccCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHH
Q psy17025 1648 GVCLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKS--RDYKKLSNIHSKLHDAYVKLY 1715 (2010)
Q Consensus 1648 g~~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~--~dy~kLs~i~~~la~~y~~I~ 1715 (2010)
....+...+..+...|.|+.|..+|+..+.+++.. .|--..++++..+.+++..+-
T Consensus 392 ------------~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 392 ------------LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp ------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 22345555666777888999999999999999973 454455556666666665443
No 21
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=55.03 E-value=16 Score=36.85 Aligned_cols=55 Identities=13% Similarity=0.214 Sum_probs=42.6
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
..+.|.|..++.+|.|+|++.+.++.. +...|.|+.|+-.- . ....+|.+.+||-
T Consensus 41 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~d~--~-----~~~~iG~~~i~l~ 95 (126)
T 1rlw_A 41 SRKRTRHFNNDINPVWNETFEFILDPN--QENVLEITLMDANY--V-----MDETLGTATFTVS 95 (126)
T ss_dssp CCEECCCCTTCSSCEEEEEEEEEECTT--SCCEEEEEEEECCS--S-----CCEEEEEEEEEGG
T ss_pred ceEEccccCCCCCCcccceEEEEecCC--CCCEEEEEEEECCC--C-----CCceeEEEEEEHH
Confidence 456788888899999999999998643 45689999998431 1 1348999999985
No 22
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=53.80 E-value=5.7 Score=41.19 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=45.0
Q ss_pred ceEEEEEEeeecCCCCcceeEEEe-cCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 592 TTEAYTSVIYHNKCPYVSDEIKIQ-LPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 592 ~~~~~t~V~yHnk~P~f~DEiKI~-LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...+.|.|..++.+|.|++++.+. +|..-.....|.|+.|+-.--. ....+|.+.+||-.
T Consensus 65 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~------~d~~iG~~~i~l~~ 125 (142)
T 2chd_A 65 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFG------HNEFIGETRFSLKK 125 (142)
T ss_dssp GGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTS------CEEEEEEEEEEGGG
T ss_pred cceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCC------CCcEEEEEEEEHHH
Confidence 356788888999999999999988 6644333468999999853211 23589999999964
No 23
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=52.49 E-value=2.3e+02 Score=32.31 Aligned_cols=49 Identities=8% Similarity=-0.016 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHh-ccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q psy17025 1663 LLEHAASSFYTA-GMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAY 1711 (2010)
Q Consensus 1663 ll~~ai~~f~kg-~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y 1711 (2010)
.+......+..- +.|+.|+..|+..+.++....+-...+.++..++.+|
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 344455566664 7788888888888877776444333344444444444
No 24
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.34 E-value=14 Score=38.03 Aligned_cols=58 Identities=12% Similarity=0.085 Sum_probs=44.1
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCC-CCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPT-LEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~-l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|..++.+|.|+|++.+.++.. +.....|.|+.|+-.--. ....+|.+.+||-.
T Consensus 39 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~------~~~~lG~~~i~l~~ 97 (140)
T 2dmh_A 39 KKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG------QNKLIGTATVALKD 97 (140)
T ss_dssp EEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS------SCCCCEEEEEEGGG
T ss_pred eEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC------CCceEEEEEEEHHH
Confidence 47788888889999999999999763 456789999999742211 23478999998853
No 25
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=51.88 E-value=2.7e+02 Score=32.42 Aligned_cols=119 Identities=8% Similarity=0.001 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCcc
Q psy17025 1551 DPEMLLDLMYRIAKGYQNSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPN 1630 (2010)
Q Consensus 1551 DpE~l~dl~~~lA~~Y~~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pn 1630 (2010)
|.+.-++.+-+......+.|+.....+..|+..+...|+|.+|..++..+..+. +-. ++
T Consensus 24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~---~~----------------- 82 (406)
T 3sf4_A 24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-RTI---GD----------------- 82 (406)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT---TC-----------------
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-Hhc---cc-----------------
Confidence 444444443333333445677777778889999999999999988887554331 110 00
Q ss_pred chhhcccCCCCCCccccCccCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q psy17025 1631 CLEECAVSDDVLSPEQEGVCLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDA 1710 (2010)
Q Consensus 1631 i~~E~~~~~d~~~~~~~g~~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~ 1710 (2010)
.......+...+..+..-+.|+.|+..++..+.+++...+-...+.++..++.+
T Consensus 83 --------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 83 --------------------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 011223444455667777889999999999999998877777777888888888
Q ss_pred HHHHHH
Q psy17025 1711 YVKLYQ 1716 (2010)
Q Consensus 1711 y~~I~~ 1716 (2010)
|....+
T Consensus 137 ~~~~g~ 142 (406)
T 3sf4_A 137 YHAKGK 142 (406)
T ss_dssp HHHHHH
T ss_pred HHHcCC
Confidence 776654
No 26
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.67 E-value=7.8 Score=40.14 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=42.7
Q ss_pred EEEEEEeeecCCCCcceeEEEec-CCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQL-PPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~L-P~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|..++.+|.|+|++.+.+ |..-.....|.|+.|+-.-- .....+|.+.+||-.
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~------~~~~~iG~~~i~l~~ 120 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRF------SRNDPIGEVSIPLNK 120 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSS------SSCEEEEEEEEETTT
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCC------CCCcEEEEEEEEhhh
Confidence 45677888889999999999984 54333456899999984321 123589999999864
No 27
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=51.31 E-value=1.8e+02 Score=28.33 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy17025 1570 PNLRLTWLANMAQKHMERNNHTEAGMCLVH 1599 (2010)
Q Consensus 1570 PdLrl~wL~~La~~H~~~~n~~EAa~cl~h 1599 (2010)
|.....-+..|+..+...|++.+|-.++..
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 34 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 34 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 333444445556666666666666555553
No 28
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=51.15 E-value=11 Score=40.26 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=45.6
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|..++.+|.|++++.+.++..--....|.|+.|+-.-- .....+|.+.+||-.
T Consensus 74 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~------~~~~~iG~~~i~l~~ 132 (166)
T 2cm5_A 74 AKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG------KSNDYIGGCQLGISA 132 (166)
T ss_dssp CEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSS------SCCEEEEEEEEETTC
T ss_pred ceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCC------CCCcEEEeEEEeccc
Confidence 46778888899999999999999986544567999999984321 124589999999864
No 29
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=50.97 E-value=1.3e+02 Score=35.10 Aligned_cols=56 Identities=11% Similarity=-0.032 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q psy17025 1661 VCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAYVKLYQ 1716 (2010)
Q Consensus 1661 ~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y~~I~~ 1716 (2010)
...+...+..+.+.+.|+.|+..++..+.+.+...+-...+.++..++.+|.....
T Consensus 307 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 307 GRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 34555555556666666666666666666666666666666666666666655543
No 30
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=50.54 E-value=2.7e+02 Score=32.77 Aligned_cols=120 Identities=8% Similarity=0.017 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCc
Q psy17025 1550 EDPEMLLDLMYRIAKGYQNSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISP 1629 (2010)
Q Consensus 1550 ~DpE~l~dl~~~lA~~Y~~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~p 1629 (2010)
.|.+.-+..+-+......+.++.....+..|+..+...|+|.+|-.++..+..+. +-+ ++
T Consensus 62 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~---~~---------------- 121 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-KSM---ND---------------- 121 (411)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHT---TC----------------
T ss_pred CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHc---cC----------------
Confidence 3455444544444444556677777788899999999999999988887554331 110 00
Q ss_pred cchhhcccCCCCCCccccCccCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q psy17025 1630 NCLEECAVSDDVLSPEQEGVCLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHD 1709 (2010)
Q Consensus 1630 ni~~E~~~~~d~~~~~~~g~~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~ 1709 (2010)
.......+...+..+..-+.|+.|+..|+..+.+++...+-...+.++..++.
T Consensus 122 ---------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 122 ---------------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGN 174 (411)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 01122344445556667778889999999988888876666666677777777
Q ss_pred HHHHHHH
Q psy17025 1710 AYVKLYQ 1716 (2010)
Q Consensus 1710 ~y~~I~~ 1716 (2010)
+|....+
T Consensus 175 ~~~~~g~ 181 (411)
T 4a1s_A 175 VYHAKGK 181 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHcCc
Confidence 7665544
No 31
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=50.33 E-value=11 Score=38.27 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=43.8
Q ss_pred ceEEEEEEeeecCCCCcceeEEEec-CCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 592 TTEAYTSVIYHNKCPYVSDEIKIQL-PPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 592 ~~~~~t~V~yHnk~P~f~DEiKI~L-P~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.....|.|..++.+|.|+|++.+.+ |..-.....|.|+.|+-.-..+. ....+|.+.+||-.
T Consensus 54 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~----~~~~lG~~~i~l~~ 116 (129)
T 2bwq_A 54 KNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREE----ESEFLGEILIELET 116 (129)
T ss_dssp GGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-----------CEEEEEEEEEGGG
T ss_pred CcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCc----CCceeEEEEEEccc
Confidence 3567788889999999999999984 54433557899999985332210 14589999999864
No 32
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=48.42 E-value=1.3e+02 Score=35.66 Aligned_cols=53 Identities=9% Similarity=-0.024 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q psy17025 1662 CLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAYVKL 1714 (2010)
Q Consensus 1662 ~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y~~I 1714 (2010)
..+...+..+...+.|+.|+..++..+.+.+...+-...+.++..++.+|...
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 44555666677778888888888888888887666566666777777666543
No 33
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=47.67 E-value=12 Score=38.42 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=41.9
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|..++.+|.|.|++.+.++. ....|.|+.|+-.-.. ....+|.+.+||-.
T Consensus 46 ~~kT~~~~~t~nP~wne~f~f~~~~---~~~~l~i~V~d~d~~~------~~~~lG~~~i~l~~ 100 (133)
T 2ep6_A 46 RLQTHTVYKNLNPEWNKVFTFPIKD---IHDVLEVTVFDEDGDK------PPDFLGKVAIPLLS 100 (133)
T ss_dssp EEECCCCSSCSSCCCCEEEEEEESC---TTCEEEEEEEEEETTE------EEEECCBCEEEGGG
T ss_pred EEEeeeecCCCCCccccEEEEEecC---CCCEEEEEEEECCCCC------CCCeeEEEEEEHHH
Confidence 4578888889999999999999983 3468999999854322 23478888888754
No 34
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=47.37 E-value=10 Score=38.82 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=40.9
Q ss_pred EEEEEEee-ecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIY-HNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~y-Hnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
...|.|.. ++.+|.|+|++.+.++. ....|.|+.|+-.-- .....+|.+.+||-
T Consensus 43 ~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~l~~~V~d~~~~------~~d~~lG~~~i~l~ 97 (136)
T 1wfj_A 43 DQKSNVAEGMGTTPEWNETFIFTVSE---GTTELKAKIFDKDVG------TEDDAVGEATIPLE 97 (136)
T ss_dssp EEECCCCTTCCSSCEEEEEEEEEEES---SCCEEEEEECCSSSC------TTTCCSEEEEEESH
T ss_pred cceeEeccCCCCCCccCcEEEEEECC---CCCEEEEEEEECCCC------CCCceEEEEEEEHH
Confidence 35778887 78999999999999884 567899999874211 12357888888874
No 35
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=46.98 E-value=17 Score=39.22 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=42.0
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..+.|.|..++.+|.|.+++.+.++. ....|.|+.|+-..-. ....+|-+.+||-.
T Consensus 46 ~~~kT~v~~~t~nP~Wne~f~f~v~~---~~~~L~~~V~d~d~~~------~d~~lG~~~i~l~~ 101 (176)
T 3m7f_B 46 TSVQTKTIKKSLNPKWNEEILFRVLP---QRHRILFEVFDENRLT------RDDFLGQVDVPLYP 101 (176)
T ss_dssp EEEECCCCSSCSSCEEEEEEEEEECT---TTCEEEEEEEECC----------CEEEEEEEEESCS
T ss_pred cceeCceECCCCCCcccceEEEEEcC---CCCEEEEEEEECCCCC------CCcEEEEEEEEHHH
Confidence 45678888889999999999999883 3478999999743221 23588999999864
No 36
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=46.80 E-value=13 Score=38.15 Aligned_cols=61 Identities=10% Similarity=0.046 Sum_probs=44.7
Q ss_pred eEEEEEEeeecCCCCcceeEEEe-cCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQ-LPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~-LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|..++.+|.|+|++.+. +|..-.....|.|+.|+-.-..+ .....+|.+.+||-.
T Consensus 58 ~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~----~~~~~lG~~~i~l~~ 119 (141)
T 1v27_A 58 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVRE----EESEFLGEILIELET 119 (141)
T ss_dssp SCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSS----CCBCCCEEEEEEGGG
T ss_pred cceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcC----CCCceEEEEEEEccc
Confidence 34567888889999999999998 56544455789999998533221 014589999999864
No 37
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=46.76 E-value=27 Score=36.29 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=44.1
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccc-----cccCCCccceEEEEEeecccC
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQK-----KLEQNTVETPVGYTWLPLLKD 658 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~-----k~~~~~~et~vGyawLPLl~~ 658 (2010)
...|.|..++.+|.|.+++.+.++.. ...|.|+.|+-.... ++-+......+|-+.+||-.-
T Consensus 50 ~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l 116 (148)
T 3kwu_A 50 KKRTKTIYGNLNPVWEENFHFECHNS---SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116 (148)
T ss_dssp EEECCCCCSCSSCEEEEEEEEEECST---TCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGC
T ss_pred EEECCccCCCCCCCcccEEEEEecCC---CCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHC
Confidence 45788888899999999999988743 368999999865420 000001346899999998753
No 38
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=46.27 E-value=14 Score=38.70 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=43.1
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|..++.+|.|++++.+.++..-. ...|.|+.|+-.-- .....+|.+.+||-.
T Consensus 68 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~L~i~V~d~d~~------~~~~~iG~~~i~l~~ 125 (149)
T 1a25_A 68 SKQKTKTIKCSLNPEWNETFRFQLKESDK-DRRLSVEIWDWDLT------SRNDFMGSLSFGISE 125 (149)
T ss_dssp SCEECCCCSSCSSCEEEEEEEEECCSGGG-GCEEEEEEEECCSS------SCCEEEEEEEEEHHH
T ss_pred ceEecceeCCCCCCcCCcEEEEEeccccC-CCEEEEEEEECCCC------CCCCEEEEEEEEHHH
Confidence 45678888899999999999999875322 35799999984321 123589999999853
No 39
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=45.73 E-value=27 Score=35.98 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=38.7
Q ss_pred EEEEee-ecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 596 YTSVIY-HNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 596 ~t~V~y-Hnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.|.+.. .+.||.|+|++.+.++. ....|.|+.|+-. -. ....+|-+.+||-.
T Consensus 35 kt~~~~~~t~nP~WnE~f~f~v~~---~~~~L~~~V~D~d-~~------~dd~iG~~~i~l~~ 87 (131)
T 2cjt_A 35 KSTTIAVRGSQPSWEQDFMFEINR---LDLGLTVEVWNKG-LI------WDTMVGTVWIPLRT 87 (131)
T ss_dssp EEECCCEESSSCEEEEEEEEEECC---CSSEEEEEEEECC-SS------CEEEEEEEEEEGGG
T ss_pred EEeEecCCCCCceECCEEEEEEeC---CCCeEEEEEEECC-CC------CCCeEEEEEEEHHH
Confidence 344443 67999999999999984 3457999999854 21 24589999999854
No 40
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=45.39 E-value=28 Score=37.54 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=39.0
Q ss_pred EEEEee-ecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 596 YTSVIY-HNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 596 ~t~V~y-Hnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.|.+.. .+.||.|+|++.+.++. ....|.|+.|+-. -. ....+|-+.+||-.
T Consensus 44 kt~~~~~~t~nP~WnE~f~f~v~~---~~~~L~~~V~D~d-~~------~dd~iG~~~i~L~~ 96 (167)
T 2cjs_A 44 ESTTIAVRGSQPSWEQDFMFEINR---LDLGLTVEVWNKG-LI------WDTMVGTVWIPLRT 96 (167)
T ss_dssp EEECCCEESSSCEEEEEEEEECCC---TTSEEEEEEEECC-SS------CCEEEEEEEEEGGG
T ss_pred EEEEecCCCCCCCCCCEEEEEeeC---CCCEEEEEEEECC-CC------CCceEEEEEEEHHH
Confidence 455554 57999999999999983 3457999999854 21 23589999999864
No 41
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.37 E-value=8.8 Score=40.05 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=43.0
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|..++.+|.|+|++.+.+|..-.....|.|+.|+-.-- .....+|-+.+||-.
T Consensus 69 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~------~~~~~iG~~~i~l~~ 126 (147)
T 2enp_A 69 SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKF------SRHCVIGKVSVPLCE 126 (147)
T ss_dssp CEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTT------CCSCCCEEEEEETTT
T ss_pred ceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCC------cCCcEEEEEEEechh
Confidence 4578888889999999999998875433445899999974221 123489999999854
No 42
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=45.11 E-value=4.7e+02 Score=31.23 Aligned_cols=101 Identities=10% Similarity=0.124 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhcCCCcH--HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Q psy17025 1369 ILNTLELIVQVVQQC--DHLHGLLGSVMKILLHAFSCNQST--AVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQLL 1444 (2010)
Q Consensus 1369 VLD~le~~~~~l~~~--d~~~~ll~~vf~vll~~L~~nQS~--~~l~~~faslR~~i~kF~~~LF~~~~~~c~~l~~~lL 1444 (2010)
||+++..++..+... +.-..++..||.--|.+...+-.+ -....+|.-+|+++..-...||.-..+.+..++..++
T Consensus 94 VL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsii 173 (321)
T 1w9c_A 94 VLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSII 173 (321)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Confidence 566677777665422 233578888998889988876654 6778899999999988667888888888899999998
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHH
Q psy17025 1445 KHSSSNLSLIRTNSAASLYLLMRQN 1469 (2010)
Q Consensus 1445 ~~c~s~~~~lR~~A~~~Lyllmr~n 1469 (2010)
--|-....++-..+-.+|+.|+.+-
T Consensus 174 Wa~kH~~r~V~e~gL~il~~ll~n~ 198 (321)
T 1w9c_A 174 WAFKHTMRNVADTGLQILFTLLQNV 198 (321)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCchHHHHHHHHHHHHHHHH
Confidence 8888889999999999999998774
No 43
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=44.47 E-value=15 Score=38.72 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=43.1
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|..++.+|.|.+++.+.+|..-... -|.|+.|+..--.++ ...+|-+.+||-.
T Consensus 63 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~L~i~V~d~d~~~~~-----d~~lG~~~i~l~~ 121 (153)
T 3fbk_A 63 RHQKTQTVPDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSRQ-----SGLIGCMSFGVKS 121 (153)
T ss_dssp TCEECCCCTTCSSCEEEEEEEEECCGGGTTS-EEEEEEEECCSSGGG-----CEEEEEEEEEHHH
T ss_pred cEEeccccCCCCCCccccEEEEecccHHhCC-EEEEEEEeCCCCCCC-----CcEEEEEEEEHHH
Confidence 3457888888999999999999997554444 399999985332221 3588999999853
No 44
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=44.17 E-value=8 Score=41.27 Aligned_cols=58 Identities=9% Similarity=0.018 Sum_probs=44.5
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
...|.|...+.||.|+|++.+.+|..--....|.|+.|+-.-.. ....+|-+.+||-.
T Consensus 82 ~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~------~~d~iG~~~i~l~~ 139 (155)
T 2z0u_A 82 LFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSH------LEECLGGAQISLAE 139 (155)
T ss_dssp EEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTS------CEEEEEEEEEECTT
T ss_pred ceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCC------CCcEEEEEEEEHHH
Confidence 46788888999999999999998854334568999999853221 24589999999864
No 45
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=44.12 E-value=18 Score=36.85 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=41.4
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
...|.|..++.+|.|++++.+.++..-. ...|.|+.|+-..-. ....+|-+.+||-
T Consensus 54 ~~kT~~~~~t~nP~wne~f~f~~~~~~~-~~~l~i~v~d~d~~~------~~~~iG~~~i~l~ 109 (137)
T 3rdl_A 54 KQKTKTIRSTLNPQWNESFTFKLKPSDK-DRRLSVEIWDWDRTT------RNDFMGSLSFGVS 109 (137)
T ss_dssp CEECCCCCSCSSCEEEEEEEEECCGGGG-GCEEEEEEEECCSSS------CCEEEEEEEEEHH
T ss_pred eecCceEcCCCCCCcccEEEEEcCchhc-CCEEEEEEEECCCCC------CCceEEEEEEeHH
Confidence 4568888899999999999999875322 347999999843211 2347899888875
No 46
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=44.00 E-value=11 Score=38.84 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=44.3
Q ss_pred eEEEEEEeeecCCCCcceeEEEe-cCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQ-LPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~-LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|..++.+|.|+|++.+. +|..--....|.|+.|+-.-- .....+|-+.+||-.
T Consensus 56 ~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~------~~~~~lG~~~i~l~~ 115 (134)
T 2b3r_A 56 SKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESL------RENFFLGGITLPLKD 115 (134)
T ss_dssp CCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSS------SCCEEEEEEEEEGGG
T ss_pred ceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCC------CCCcEEEEEEEEhhh
Confidence 44678888899999999999998 775433456899999974211 123589999999864
No 47
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=43.85 E-value=1.6e+02 Score=29.07 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=37.7
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHHH
Q psy17025 1668 ASSFYTAGMYETVNNVYKVIFPIVEK-SRDYKKLSNIHSKLHDAYVKLY 1715 (2010)
Q Consensus 1668 i~~f~kg~~~E~ai~l~k~Lip~yE~-~~dy~kLs~i~~~la~~y~~I~ 1715 (2010)
+..+.+-+.|+.|+..|+..+.+... ..+|..++.+|..++.+|..+.
T Consensus 49 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~ 97 (127)
T 4gcn_A 49 AAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN 97 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 44455677899999999999988876 4788888888888888876554
No 48
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=43.64 E-value=19 Score=38.67 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=43.0
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..+.|.|..++.+|.|+|++.+.++. ....|.|+.|| ..+.. .....+|.+.+||-.
T Consensus 68 ~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~L~~~V~~-d~d~~----~~d~~iG~~~i~l~~ 124 (171)
T 2q3x_A 68 AKKKTRIARKTLDPLYQQSLVFDESP---QGKVLQVIVWG-DYGRM----DHKCFMGVAQILLEE 124 (171)
T ss_dssp EEEECCCCCSCSSCEEEEEEECSSCC---TTEEEEEEEEE-ECSTT----CSSEEEEEEEECGGG
T ss_pred cceeCccCCCCCCCCCCcEEEEEecC---CCCEEEEEEEE-cCCCC----CCCCEEEEEEEEHHH
Confidence 46678888999999999999999874 35789999995 22221 123589999999864
No 49
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=43.39 E-value=4.7e+02 Score=32.35 Aligned_cols=81 Identities=9% Similarity=-0.039 Sum_probs=57.6
Q ss_pred CChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCCcccc
Q psy17025 1568 NSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQE 1647 (2010)
Q Consensus 1568 ~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~~~~~ 1647 (2010)
++|++ .+-+++|+..+...|+|.||.--+..+.++.-..+ + |. .|.
T Consensus 335 ~Hp~~-a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l---G-----~~--------Hp~----------------- 380 (433)
T 3qww_A 335 SNVYM-LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY---P-----VY--------SLN----------------- 380 (433)
T ss_dssp TSHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS---C-----SS--------CHH-----------------
T ss_pred hchHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc---C-----CC--------ChH-----------------
Confidence 55664 56678999999999999999988886654432222 1 00 011
Q ss_pred CccCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Q psy17025 1648 GVCLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKS 1694 (2010)
Q Consensus 1648 g~~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~ 1694 (2010)
....|...+..+...+.|+.|..+|+..+.+++..
T Consensus 381 ------------~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 381 ------------VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp ------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 22345566667778888999999999999999974
No 50
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=41.85 E-value=14 Score=39.56 Aligned_cols=52 Identities=19% Similarity=0.175 Sum_probs=37.8
Q ss_pred EEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
+.|.|...+.||.|+|++.+.++ +..+|-|+.|+-..-. ....+|-+-+||-
T Consensus 74 ~kT~v~~ktlnP~WNE~F~f~v~----~~~~L~~~V~D~d~~~------~dd~iG~~~i~l~ 125 (157)
T 2fk9_A 74 GQTSTKQKTNKPTYNEEFCANVT----DGGHLELAVFHETPLG------YDHFVANCTLQFQ 125 (157)
T ss_dssp EECCCCSSCSSCEEEEEEEEEEE----EECEEEEEEEECCSSS------SCEEEEEEEEEHH
T ss_pred EEeeecCCCCCCccCcEEEEEcC----CCCEEEEEEEECCCCC------CCCEEEEEEEEHH
Confidence 35666777899999999999875 3569999999832111 2347888888873
No 51
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.10 E-value=8.6 Score=39.82 Aligned_cols=61 Identities=10% Similarity=0.008 Sum_probs=43.9
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|..++.+|.|+|++.+.+|..-.....|.|+.|+-.--.++ ....+|.+.+||-.
T Consensus 60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~----~~~~iG~~~i~l~~ 120 (142)
T 2dmg_A 60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSK----DKGLLGKVLVALAS 120 (142)
T ss_dssp SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCC----SCCCCEEEEEECCC
T ss_pred CcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCcccc----CCcEEEEEEEeccc
Confidence 44678888899999999999998875433445899999985321111 12479999999853
No 52
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=39.12 E-value=3.7e+02 Score=31.58 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHcCChhhhHHHHHHH
Q psy17025 1573 RLTWLANMAQKHMERNNHTEAGMCLVHS 1600 (2010)
Q Consensus 1573 rl~wL~~La~~H~~~~n~~EAa~cl~h~ 1600 (2010)
....+..|+..+...|+|.+|-.++..+
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a 210 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKA 210 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3445566677777777777776666543
No 53
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=38.18 E-value=4.8e+02 Score=29.39 Aligned_cols=117 Identities=10% Similarity=0.093 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHhhccCChhHH--HHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCcccccccc
Q psy17025 1550 EDPEMLLDLMYRIAKGYQNSPNLR--LTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFI 1627 (2010)
Q Consensus 1550 ~DpE~l~dl~~~lA~~Y~~~PdLr--l~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I 1627 (2010)
.|.+....++-.+.......|+.. +.|...++..+...+++.+|-.++..+. .......
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al-------~~~~~~~------------ 149 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL-------NQQLTGI------------ 149 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH-------HTCCCCS------------
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH-------HHhcccc------------
Confidence 355555555555555555667755 7888899999999999999987776432 1110000
Q ss_pred CccchhhcccCCCCCCccccCccCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh-hcHHHHHHHHHH
Q psy17025 1628 SPNCLEECAVSDDVLSPEQEGVCLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKS-RDYKKLSNIHSK 1706 (2010)
Q Consensus 1628 ~pni~~E~~~~~d~~~~~~~g~~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~-~dy~kLs~i~~~ 1706 (2010)
| .+ +....+......+..-+.|+.|+..|+..+..++.. .+-...+.++..
T Consensus 150 ------------~-------------~~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~n 201 (293)
T 3u3w_A 150 ------------D-------------VY---QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp ------------C-------------TT---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred ------------c-------------HH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 0 00 122334444555555667778888887777777754 454555555555
Q ss_pred HHHHHHH
Q psy17025 1707 LHDAYVK 1713 (2010)
Q Consensus 1707 la~~y~~ 1713 (2010)
++.+|.+
T Consensus 202 lg~~y~~ 208 (293)
T 3u3w_A 202 HAKALYL 208 (293)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 54
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=37.40 E-value=3.7e+02 Score=31.57 Aligned_cols=117 Identities=9% Similarity=-0.006 Sum_probs=80.8
Q ss_pred CChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCCcccc
Q psy17025 1568 NSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQE 1647 (2010)
Q Consensus 1568 ~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~~~~~ 1647 (2010)
+.|.. ...+..|+..+.+.|++.+|-.++..+..+ ....++ +.....+ +++...
T Consensus 256 ~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~----~~~~~~~-----~~l~~l------------ 309 (378)
T 3q15_A 256 VPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDH----ITARSH----KFYKELF-----LFLQAV------------ 309 (378)
T ss_dssp CGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCTTCC----SCHHHHH-----HHHHHH------------
T ss_pred CChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----HHHcCC----HHHHHHH-----HHHHHH------------
Confidence 56777 778889999999999999998887754332 111010 1100000 111100
Q ss_pred CccCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHh
Q psy17025 1648 GVCLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAYVKLYQI 1717 (2010)
Q Consensus 1648 g~~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y~~I~~~ 1717 (2010)
.. ..+-...+.+|++++++.+.+....+++..+.-+|....+|.+-...+.+.-++.++|...
T Consensus 310 --y~-----~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 372 (378)
T 3q15_A 310 --YK-----ETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKG 372 (378)
T ss_dssp --HS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --Hh-----CCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 00 0000157889999999999999999999999999999999999888888888888888753
No 55
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=37.39 E-value=18 Score=37.24 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=37.3
Q ss_pred EEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 596 YTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 596 ~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
.|.+...+.+|.|+|++.+.++.. ..|.|+.||-.-- .....+|.+-+||-
T Consensus 53 ~T~~~~~t~nP~WnE~f~f~v~~~----~~L~~~V~d~d~~------~~dd~iG~~~i~l~ 103 (136)
T 1gmi_A 53 QTATKQKTNSPAWHDEFVTDVCNG----RKIELAVFHDAPI------GYDDFVANCTIQFE 103 (136)
T ss_dssp ECCCCSSCSSCEEEEEEEEEEEEE----CEEEEEEEECCSS------SSCEEEEEEEEEHH
T ss_pred eeeEECCCcCCccCCEEEEEecCC----CEEEEEEEeCCCC------CCCCEEEEEEEEHH
Confidence 445555678999999999998643 7899999983211 12348899999884
No 56
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=36.82 E-value=27 Score=40.51 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=42.6
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
.+.|.|..++.+|.|+|++.+.++..--....|.|+.|+..--. ....+|.+-+||-.
T Consensus 55 ~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~------~~~~lG~~~i~l~~ 112 (284)
T 2r83_A 55 KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS------KHDIIGEFKVPMNT 112 (284)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSS------CCCEEEEEEEEGGG
T ss_pred eEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCC------CCceeEEEEEcchh
Confidence 34577888889999999999998865445679999999853211 23477877777643
No 57
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=35.37 E-value=32 Score=39.79 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=45.7
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
....|.|..++.+|.|++++.+.+|..-.....|.|+.|+-..-. ....+|-+-+||-.
T Consensus 187 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~------~~~~iG~~~i~l~~ 245 (284)
T 2r83_A 187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG------KNDAIGKVFVGYNS 245 (284)
T ss_dssp EEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSS------CCCEEEEEEEETTC
T ss_pred eeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCC------CCcEEEEEEECCCC
Confidence 456788888899999999999999876555678999999853321 23589999999853
No 58
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=32.59 E-value=36 Score=46.51 Aligned_cols=71 Identities=20% Similarity=0.344 Sum_probs=52.2
Q ss_pred cCCCCcceeEEEecC-CCCCCCcEEEEEEEeeecc--c----cccCCCccceEEEEEeeccc-CCeeecCcEEeeEeec
Q psy17025 603 NKCPYVSDEIKIQLP-PTLEDKHHLLFTFYHISCQ--K----KLEQNTVETPVGYTWLPLLK-DGQLQLNDFCLPVTLE 673 (2010)
Q Consensus 603 nk~P~f~DEiKI~LP-~~l~~~hHLLFTFyHvsc~--~----k~~~~~~et~vGyawLPLl~-~g~l~~ge~~LpV~~~ 673 (2010)
..+|.|.+.+...++ .+|-....|-||.|-++.. . ++.++....++|++=+||+. +|.|..|.+.|.+-..
T Consensus 262 ~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~~l~~G~~~l~lw~~ 340 (940)
T 2wxf_A 262 CSEPVWKQRLEFDISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDYKDQLKTGERCLYMWPS 340 (940)
T ss_dssp CSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC----------------CEEEEEEEEESBCTTSBBCCEEEEEECEEC
T ss_pred CCCcccceEEEcccccccCCcccEEEEEEEEecCCccCccccccccccccceEEEEeeeEECCcCccccCCEEEEEeeC
Confidence 466899998887766 4588889999999998764 1 11111245799999999996 6899999999988764
No 59
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=31.67 E-value=38 Score=34.39 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=41.3
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
..+.|.|...+.+|.|.+++.+.++.. ..|.|+.|+-....+.. ....+|-+.+||-
T Consensus 39 ~~~kT~v~~~t~nP~wne~f~f~v~~~----~~l~~~v~d~d~~~~~~---~d~~lG~~~i~l~ 95 (132)
T 3pyc_A 39 QCHSTDTVKNTLDPKWNQHYDLYVGKT----DSITISVWNHKKIHKKQ---GAGFLGCVRLLSN 95 (132)
T ss_dssp CEEECCCCSSCSSCEEEEEEEEEEETT----CCEEEEEEEGGGTTSST---TTTEEEEEEECHH
T ss_pred ceEECCccCCCCCCCccCEEEEEeCCC----CEEEEEEEECCCCCCCC---CCCceEEEEEeHH
Confidence 456788888899999999999887643 23999999854332211 1358999999964
No 60
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=31.45 E-value=42 Score=36.33 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=41.3
Q ss_pred eEEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeecc
Q psy17025 593 TEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLL 656 (2010)
Q Consensus 593 ~~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl 656 (2010)
..+.|.|...+.+|.|.|++.+.++ +...|.|+.|+-.-- .....+|.+.+||-
T Consensus 68 ~~~kT~v~~~tlnP~Wne~f~f~v~----~~~~L~~~V~D~d~~------~~dd~lG~~~i~l~ 121 (173)
T 2nq3_A 68 QSKKTEKCNNTNSPKWKQPLTVIVT----PVSKLHFRVWSHQTL------KSDVLLGTAALDIY 121 (173)
T ss_dssp EEEECCCCSSCSSCEEEEEEEEEEC----TTCEEEEEEEECCSS------SCCEEEEEEEEEHH
T ss_pred EEeEccccCCCCCCeECCEEEEEeC----CCCEEEEEEEECCCC------CCCceEEEEEEEHH
Confidence 4567788888899999999999874 477899999974321 12458899999885
No 61
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=30.34 E-value=3.8e+02 Score=30.24 Aligned_cols=96 Identities=14% Similarity=0.010 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCCccccCccCC
Q psy17025 1573 RLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQEGVCLG 1652 (2010)
Q Consensus 1573 rl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~~~~~g~~~~ 1652 (2010)
.+.-+..|+..+...|+|.+|-.++..+..+ +... +.
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~----~~~~------~~--------------------------------- 190 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQ----LEAL------HD--------------------------------- 190 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHS------SC---------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHhc------cc---------------------------------
Confidence 3445678888888888888888877754322 1100 00
Q ss_pred CccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q psy17025 1653 KDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAYVKL 1714 (2010)
Q Consensus 1653 ~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y~~I 1714 (2010)
........+...+..+.+-+.|+.|+..++..+.+.....++..++.+|..++.+|.+.
T Consensus 191 ---~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 249 (293)
T 3u3w_A 191 ---NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred ---chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 01123334445555666677788888888888888877666556677777777666543
No 62
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=29.71 E-value=10 Score=39.25 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=41.5
Q ss_pred EEEEEeeecCCCCcceeEEEe-cCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEeeccc
Q psy17025 595 AYTSVIYHNKCPYVSDEIKIQ-LPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLPLLK 657 (2010)
Q Consensus 595 ~~t~V~yHnk~P~f~DEiKI~-LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLPLl~ 657 (2010)
..|.|..++.+|.|++++.+. +|..--....|.|+.|+-.-- .....+|.+.+||-.
T Consensus 66 ~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~------~~~~~lG~~~i~l~~ 123 (142)
T 1rh8_A 66 RRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRF------SSNDFLGEVLIDLSS 123 (142)
T ss_dssp TTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSS------SCEEEEEEEEEETTS
T ss_pred eeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCC------CCCceEEEEEEeccc
Confidence 446677788999999999986 765433456899999984321 124589999999853
No 63
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=28.73 E-value=6.2e+02 Score=27.83 Aligned_cols=75 Identities=9% Similarity=0.088 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH
Q psy17025 1390 LGSVMKILLHAFSCNQSTAVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQLLKHSSSNLSLIRTNSAASLYLLMRQ 1468 (2010)
Q Consensus 1390 l~~vf~vll~~L~~nQS~~~l~~~faslR~~i~kF~~~LF~~~~~~c~~l~~~lL~~c~s~~~~lR~~A~~~Lyllmr~ 1468 (2010)
+..++..+...|.......+.+..+.++..+....+.. | ..+...+...|+..+..+...+|..|...|..++.+
T Consensus 54 ~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~-~---~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~ 128 (242)
T 2qk2_A 54 YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR-F---SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS 128 (242)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG-G---HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh-H---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc
Confidence 46777777777753455666777777788777666542 2 235677888999999999999999999999988764
No 64
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=26.80 E-value=1.2e+03 Score=30.69 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Q psy17025 1364 EVSFTILNTLELIVQVVQQCDHLHGLL--GSVMKILLHAFSCNQSTAVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCL 1441 (2010)
Q Consensus 1364 Ev~liVLD~le~~~~~l~~~d~~~~ll--~~vf~vll~~L~~nQS~~~l~~~faslR~~i~kF~~~LF~~~~~~c~~l~~ 1441 (2010)
++-..+||++..+++.+. .+ -.+.+ ..++.+++..|.. .+..+.+..+..+..+...++..+- .+...++.
T Consensus 601 ~~~~~~l~~l~~l~~~l~-~~-~~~~~~~~~~~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~----~~l~~~lp 673 (852)
T 4fdd_A 601 DFMIVALDLLSGLAEGLG-GN-IEQLVARSNILTLMYQCMQD-KMPEVRQSSFALLGDLTKACFQHVK----PCIADFMP 673 (852)
T ss_dssp HHHHHHHHHHHHHHHHHG-GG-GHHHHHTCCHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCGGGTG----GGHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh-Hh-HHHHhcCCcHHHHHHHHhCC-CChhHHHHHHHHHHHHHHHhhHHHH----HHHHHHHH
Confidence 345677899999988774 11 13333 5678888888754 3467888999999998877764332 33556666
Q ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHhc
Q psy17025 1442 QLLKHSSSNLSLIRTNSAASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVG 1492 (2010)
Q Consensus 1442 ~lL~~c~s~~~~lR~~A~~~Lyllmr~nf~~~~nf~rvk~q~i~aLs~Lv~ 1492 (2010)
.+++.......++|..|+-.+..+.+.- +.+|.-.-..++-.|-.++.
T Consensus 674 ~l~~~l~~~~~~v~~~a~~alg~i~~~~---~~~~~p~~~~il~~L~~~l~ 721 (852)
T 4fdd_A 674 ILGTNLNPEFISVCNNATWAIGEISIQM---GIEMQPYIPMVLHQLVEIIN 721 (852)
T ss_dssp HHHHTCCTTSHHHHHHHHHHHHHHHHHH---GGGGGGGTHHHHHHHHHHHT
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHHHh---hHhHHHHHHHHHHHHHHHhC
Confidence 7777777778899999999988887552 22333333344555555554
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=26.74 E-value=6.7e+02 Score=27.53 Aligned_cols=33 Identities=18% Similarity=0.019 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q psy17025 1571 NLRLTWLANMAQKHMERNNHTEAGMCLVHSAAL 1603 (2010)
Q Consensus 1571 dLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaL 1603 (2010)
......+..|+..+...|++.+|..++..+..+
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 140 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 344556667888899999999988887755433
No 66
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=26.46 E-value=1.2e+03 Score=30.44 Aligned_cols=117 Identities=12% Similarity=0.127 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHhh
Q psy17025 1367 FTILNTLELIVQVVQQCDHLHGLLGSVMKILLHAFSCNQSTAVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQLLKH 1446 (2010)
Q Consensus 1367 liVLD~le~~~~~l~~~d~~~~ll~~vf~vll~~L~~nQS~~~l~~~faslR~~i~kF~~~LF~~~~~~c~~l~~~lL~~ 1446 (2010)
..++++|..++..+.. .-.+.+..++..++..|+...++.+.+..+.++..++...+..+. .+...+...++..
T Consensus 574 ~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~----~~l~~i~~~l~~~ 647 (861)
T 2bpt_A 574 SNILTVLAAVIRKSPS--SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE----KYLETFSPYLLKA 647 (861)
T ss_dssp HHHHHHHHHHHHHCGG--GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHH
Confidence 3456677777665432 234677888888888887765534566777777777766654331 3455666666666
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHhc
Q psy17025 1447 SSSNLSLIRTNSAASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVG 1492 (2010)
Q Consensus 1447 c~s~~~~lR~~A~~~Lyllmr~nf~~~~nf~rvk~q~i~aLs~Lv~ 1492 (2010)
.+.....+|..|+.++-.+.+.-- ..|...-.+++-.+-..+.
T Consensus 648 l~~~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~ 690 (861)
T 2bpt_A 648 LNQVDSPVSITAVGFIADISNSLE---EDFRRYSDAMMNVLAQMIS 690 (861)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHHTG---GGGHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHHHhc---hhccchHHHHHHHHHHHhC
Confidence 667788899999999988877532 3344333344444444443
No 67
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=26.44 E-value=6.3e+02 Score=27.14 Aligned_cols=33 Identities=18% Similarity=0.019 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q psy17025 1571 NLRLTWLANMAQKHMERNNHTEAGMCLVHSAAL 1603 (2010)
Q Consensus 1571 dLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaL 1603 (2010)
......+..|+..+...|++.+|.-++..+..+
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 114 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345566778999999999999998888765544
No 68
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=26.16 E-value=8e+02 Score=33.85 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhcCCCcH--HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Q psy17025 1368 TILNTLELIVQVVQQC--DHLHGLLGSVMKILLHAFSCNQST--AVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQL 1443 (2010)
Q Consensus 1368 iVLD~le~~~~~l~~~--d~~~~ll~~vf~vll~~L~~nQS~--~~l~~~faslR~~i~kF~~~LF~~~~~~c~~l~~~l 1443 (2010)
.||.+...++..+... +.-..++..||.--+.+++.+-.+ -....+|.-+++++.+-+..+|.-..+.+..+...+
T Consensus 775 ~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~ 854 (1023)
T 4hat_C 775 EVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854 (1023)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHH
Confidence 4566666776665421 122457777887778888765543 566789999999999999999998889999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHHHhh
Q psy17025 1444 LKHSSSNLSLIRTNSAASLYLLMRQNFE 1471 (2010)
Q Consensus 1444 L~~c~s~~~~lR~~A~~~Lyllmr~nf~ 1471 (2010)
+--|...+.++-..+..+++.|+.+--.
T Consensus 855 ~~a~~h~~r~~~~~~l~~~~~ll~~~~~ 882 (1023)
T 4hat_C 855 CWAFKHNNRDVEVNGLQIALDLVKNIER 882 (1023)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999976543
No 69
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=25.93 E-value=5.9e+02 Score=32.92 Aligned_cols=202 Identities=11% Similarity=0.134 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHh
Q psy17025 1366 SFTILNTLELIVQVVQQCDHLHGLLGSVMKILLHAFSCNQSTAVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQLLK 1445 (2010)
Q Consensus 1366 ~liVLD~le~~~~~l~~~d~~~~ll~~vf~vll~~L~~nQS~~~l~~~faslR~~i~kF~~~LF~~~~~~c~~l~~~lL~ 1445 (2010)
+.+++.++..++.- +....++..+...+..||....+. +--..+.++..++.++|+ .+.+...-..++.
T Consensus 307 ~aVl~ea~~~i~~l----~~~~~~~~~~~~~L~~~L~~~~~n-iry~aL~~l~~l~~~~~~------~~~~~~~~~~i~~ 375 (621)
T 2vgl_A 307 NAVLFEAISLIIHH----DSEPNLLVRACNQLGQFLQHRETN-LRYLALESMCTLASSEFS------HEAVKTHIETVIN 375 (621)
T ss_dssp HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSCSCHH-HHHHHHHHHHHHTTCTTT------HHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHhccCc------HHHHHHHHHHHHH
Confidence 46777887777653 133467778888888888644332 223344555555655542 2344444556667
Q ss_pred hcC-CCchhHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhhcccccccCCCh
Q psy17025 1446 HSS-SNLSLIRTNSAASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQSFNETSLRRSLKTILLYSEQDRELEDTTF 1524 (2010)
Q Consensus 1446 ~c~-s~~~~lR~~A~~~Lyllmr~nf~~~~nf~rvk~q~i~aLs~Lv~~~~~f~e~~lr~sL~~i~~~a~~D~~~~~t~F 1524 (2010)
+.. .....+|..|..+|+.|...+ |...+= ..|-..+... +.++-+.+...|...|..- ++.+
T Consensus 376 ~L~~d~d~~Ir~~aL~lL~~l~~~~-----Nv~~Iv----~eL~~yl~~~---d~~~~~~~v~~I~~la~k~----~~~~ 439 (621)
T 2vgl_A 376 ALKTERDVSVRQRAVDLLYAMCDRS-----NAQQIV----AEMLSYLETA---DYSIREEIVLKVAILAEKY----AVDY 439 (621)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHCCHH-----HHHHHH----HHHHHHHHHC---CHHHHHHHHHHHHHHHHHH----CSST
T ss_pred HhccCCCHhHHHHHHHHHHHHcChh-----hHHHHH----HHHHHHHHhc---CHHHHHHHHHHHHHHHHhc----CCcH
Confidence 666 778999999999999987442 333332 2222222211 2333344555555555321 1233
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhhcCCHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHH
Q psy17025 1525 PEQVKDLVFNLHMILSDTVKMKEFQEDPEMLLDLMYRIAKGYQNSPNLRLTWLANMAQKHMERNNHTEAGMCLV-HSAAL 1603 (2010)
Q Consensus 1525 ~~~v~~L~~~L~~il~dt~~m~e~~~DpE~l~dl~~~lA~~Y~~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~-h~AaL 1603 (2010)
..-|.-|++ ++.... ++..+ | .. ..+.+--...|++|-.-+.+|++.-... +|..+++ -+|-+
T Consensus 440 ~~~v~~Ll~----ll~~~~---~~v~~-e-v~---~~l~~ii~~~~~~~~~~~~~l~~~l~~~----~~~~~li~~~~wi 503 (621)
T 2vgl_A 440 TWYVDTILN----LIRIAG---DYVSE-E-VW---YRVIQIVINRDDVQGYAAKTVFEALQAP----ACHENLVKVGGYI 503 (621)
T ss_dssp HHHHHHHHH----HHHHHG---GGSCS-H-HH---HHHHHHHGGGCSCHHHHHHHHHHHHTSS----SCCHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHhhc---ccchH-H-HH---HHHHHHHhCChhHHHHHHHHHHHHHcCc----cchHHHHHHHHHH
Confidence 333433333 322211 12111 1 11 1222222356888888888887654432 2322333 23345
Q ss_pred HHHHhhh
Q psy17025 1604 VAEYLHM 1610 (2010)
Q Consensus 1604 iae~L~~ 1610 (2010)
+.||-..
T Consensus 504 lGEy~~~ 510 (621)
T 2vgl_A 504 LGEFGNL 510 (621)
T ss_dssp HHHHTHH
T ss_pred hcchHHH
Confidence 6677543
No 70
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=25.43 E-value=3.5e+02 Score=30.60 Aligned_cols=99 Identities=14% Similarity=-0.004 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCCccccCc
Q psy17025 1570 PNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQEGV 1649 (2010)
Q Consensus 1570 PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~~~~~g~ 1649 (2010)
+......+..|+..+...|+|.+|-.++..+..+. +.. |.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~-~~~---------~~------------------------------ 190 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL-EAL---------HD------------------------------ 190 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHS---------CC------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hhc---------Cc------------------------------
Confidence 33346677889999999999999888887543221 100 00
Q ss_pred cCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q psy17025 1650 CLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAYVKL 1714 (2010)
Q Consensus 1650 ~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y~~I 1714 (2010)
........+...+..+.+-+.|+.|+..++..+.+.....+...++.+|..++.+|.+.
T Consensus 191 ------~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~ 249 (293)
T 2qfc_A 191 ------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT
T ss_pred ------cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 00001123444455566677788888888887777765444334555555555555433
No 71
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=25.03 E-value=7.5e+02 Score=30.33 Aligned_cols=101 Identities=11% Similarity=0.083 Sum_probs=65.7
Q ss_pred CChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCCcccc
Q psy17025 1568 NSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQE 1647 (2010)
Q Consensus 1568 ~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~~~~~ 1647 (2010)
++|+ ..+-+++|+..+...|+|.||.--+..+.++.-.++ + |. .|
T Consensus 324 ~h~~-~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l---g-----~~--------Hp------------------ 368 (429)
T 3qwp_A 324 INIY-QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF---P-----GS--------HP------------------ 368 (429)
T ss_dssp TSHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS---C-----SS--------CH------------------
T ss_pred cchH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc---C-----CC--------Ch------------------
Confidence 3444 456678889999999999999887776544322221 1 00 01
Q ss_pred CccCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHH
Q psy17025 1648 GVCLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKS--RDYKKLSNIHSKLHDAYVKL 1714 (2010)
Q Consensus 1648 g~~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~--~dy~kLs~i~~~la~~y~~I 1714 (2010)
. ....+...+..+...+.|+.|..+|+..+.+++.. .|=-..++++..|+++...+
T Consensus 369 ----------~-~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 369 ----------V-RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp ----------H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred ----------H-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 1 22344455566677778999999999999999973 44445556666666665544
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=24.76 E-value=8.7e+02 Score=28.21 Aligned_cols=98 Identities=7% Similarity=0.015 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhccCCCCcCCccccccccCccchhhcccCCCCCCccccCc
Q psy17025 1570 PNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQEGV 1649 (2010)
Q Consensus 1570 PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLiae~L~~~~~~~~lp~~~~~F~~I~pni~~E~~~~~d~~~~~~~g~ 1649 (2010)
+......+..|+..+...|++.+|-.++..+..+ ....+ +
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~~~~~-----------------~------------------- 178 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI----YKEHE-----------------A------------------- 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHTCS-----------------T-------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHhCc-----------------c-------------------
Confidence 4445566678888888889988888777754332 10000 0
Q ss_pred cCCCccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q psy17025 1650 CLGKDFTESGFVCLLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAYVK 1713 (2010)
Q Consensus 1650 ~~~~~fte~~l~~ll~~ai~~f~kg~~~E~ai~l~k~Lip~yE~~~dy~kLs~i~~~la~~y~~ 1713 (2010)
........+......+..-+.|+.|++.++..+.+++...|-..++.++..++.+|..
T Consensus 179 ------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 236 (383)
T 3ulq_A 179 ------YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS 236 (383)
T ss_dssp ------THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 0111233444455666777888899999999988888877777777777777777743
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=24.38 E-value=7.3e+02 Score=27.19 Aligned_cols=34 Identities=21% Similarity=0.072 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q psy17025 1570 PNLRLTWLANMAQKHMERNNHTEAGMCLVHSAAL 1603 (2010)
Q Consensus 1570 PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaL 1603 (2010)
+......+..|+..+...|++.+|..++..+..+
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3445566778899999999999998888765433
No 74
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=24.21 E-value=1.3e+03 Score=32.03 Aligned_cols=101 Identities=10% Similarity=0.131 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhcCCCcH--HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Q psy17025 1368 TILNTLELIVQVVQQC--DHLHGLLGSVMKILLHAFSCNQST--AVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQL 1443 (2010)
Q Consensus 1368 iVLD~le~~~~~l~~~--d~~~~ll~~vf~vll~~L~~nQS~--~~l~~~faslR~~i~kF~~~LF~~~~~~c~~l~~~l 1443 (2010)
-||.++..++..+... +.-..++..||.--+.++..+-.+ -....+|.-+++++..-+..||.-..+.+..+...+
T Consensus 801 evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i 880 (1073)
T 3gjx_A 801 EVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSI 880 (1073)
T ss_dssp HHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHH
Confidence 3566666676665422 233567888888888888755443 556688999999999988889998888888899888
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHH
Q psy17025 1444 LKHSSSNLSLIRTNSAASLYLLMRQ 1468 (2010)
Q Consensus 1444 L~~c~s~~~~lR~~A~~~Lyllmr~ 1468 (2010)
+--|...+..+-..+..+++.|+.+
T Consensus 881 ~wa~kh~~r~i~~~~l~~~~~ll~~ 905 (1073)
T 3gjx_A 881 IWAFKHTMRNVADTGLQILFTLLQN 905 (1073)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCChhHHHHHHHHHHHHHHH
Confidence 8888889999999999999999876
No 75
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=23.37 E-value=2.5e+02 Score=38.81 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Q psy17025 1368 TILNTLELIVQVVQQC--DHLHGLLGSVMKILLHAFSC--NQSTAVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQL 1443 (2010)
Q Consensus 1368 iVLD~le~~~~~l~~~--d~~~~ll~~vf~vll~~L~~--nQS~~~l~~~faslR~~i~kF~~~LF~~~~~~c~~l~~~l 1443 (2010)
.+|++++.++..+... ..-..++..++.-.+.++.. ....-+.+.+|+.+..++.+.|..+|.-..+.+..++..+
T Consensus 775 ~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~ 854 (1049)
T 3m1i_C 775 EVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854 (1049)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHH
Confidence 3778888888776411 01123444444444455542 2334688999999999999999999875666678888888
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHHH
Q psy17025 1444 LKHSSSNLSLIRTNSAASLYLLMRQN 1469 (2010)
Q Consensus 1444 L~~c~s~~~~lR~~A~~~Lyllmr~n 1469 (2010)
+..|..++..+.+.|..+|..++..-
T Consensus 855 ~~al~~~~~~~~~~~l~~l~~l~~~~ 880 (1049)
T 3m1i_C 855 CWAFKHNNRDVEVNGLQIALDLVKNI 880 (1049)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988764
No 76
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=22.94 E-value=7.7e+02 Score=31.65 Aligned_cols=200 Identities=13% Similarity=0.091 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHh
Q psy17025 1366 SFTILNTLELIVQVVQQCDHLHGLLGSVMKILLHAFSCNQSTAVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQLLK 1445 (2010)
Q Consensus 1366 ~liVLD~le~~~~~l~~~d~~~~ll~~vf~vll~~L~~nQS~~~l~~~faslR~~i~kF~~~LF~~~~~~c~~l~~~lL~ 1445 (2010)
..+++.++..++.- .....+.......+..||...-+. +-.....++..+...+|..+- . ....++.
T Consensus 291 ~aV~~ea~~~i~~l----~~~~~l~~~a~~~L~~~L~~~d~~-vr~~aL~~L~~i~~~~p~~~~-~-------~~~~i~~ 357 (618)
T 1w63_A 291 NAILYETVLTIMDI----KSESGLRVLAINILGRFLLNNDKN-IRYVALTSLLKTVQTDHNAVQ-R-------HRSTIVD 357 (618)
T ss_dssp HHHHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHTCSSTT-THHHHHHHHHHHHHHHHHHHG-G-------GHHHHHH
T ss_pred HHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhhCHHHHH-H-------HHHHHHH
Confidence 44566666666541 111234445667777777654442 223334556666666665432 1 2234666
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhhcccccccCCChH
Q psy17025 1446 HSSSNLSLIRTNSAASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQSFNETSLRRSLKTILLYSEQDRELEDTTFP 1525 (2010)
Q Consensus 1446 ~c~s~~~~lR~~A~~~Lyllmr~nf~~~~nf~rvk~q~i~aLs~Lv~~~~~f~e~~lr~sL~~i~~~a~~D~~~~~t~F~ 1525 (2010)
|-.....++|..|..+|+.|.. ..|+..+-.++...+.. .+.++=+.+...|...|..- ...+.
T Consensus 358 ~l~d~d~~Ir~~alelL~~l~~-----~~nv~~iv~eL~~~l~~-------~d~e~r~~~v~~I~~la~k~----~~~~~ 421 (618)
T 1w63_A 358 CLKDLDVSIKRRAMELSFALVN-----GNNIRGMMKELLYFLDS-------CEPEFKADCASGIFLAAEKY----APSKR 421 (618)
T ss_dssp GGGSSCHHHHHHHHHHHHHHCC-----SSSTHHHHHHHHHHHHH-------CCHHHHHHHHHHHHHHHHSS----CCCHH
T ss_pred HccCCChhHHHHHHHHHHHHcc-----cccHHHHHHHHHHHHHh-------CCHHHHHHHHHHHHHHHHHh----CccHH
Confidence 6677889999999999998854 24555443333322221 13333334455555555421 12333
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhhcCCHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q psy17025 1526 EQVKDLVFNLHMILSDTVKMKEFQEDPEMLLDLMYRIAKGYQNSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVA 1605 (2010)
Q Consensus 1526 ~~v~~L~~~L~~il~dt~~m~e~~~DpE~l~dl~~~lA~~Y~~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~AaLia 1605 (2010)
.-|..|+ .+|.+.. .+..+ ..+ ..+.+-....|+++-.-+..|++.-...-.....+.+ ++-++.
T Consensus 422 ~~v~~ll----~lL~~~~---~~v~~--~~~---~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~---~~wilG 486 (618)
T 1w63_A 422 WHIDTIM----RVLTTAG---SYVRD--DAV---PNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQV---AAWCIG 486 (618)
T ss_dssp HHHHHHH----HHHHHTG---GGSCS--SHH---HHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHH---HHHHHH
T ss_pred HHHHHHH----HHHHhcc---chhHH--HHH---HHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHH---HHHHHh
Confidence 3344443 3333322 11111 111 2222233357899988899998877653222222222 344666
Q ss_pred HHhh
Q psy17025 1606 EYLH 1609 (2010)
Q Consensus 1606 e~L~ 1609 (2010)
||-.
T Consensus 487 Ey~~ 490 (618)
T 1w63_A 487 EYGD 490 (618)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7754
No 77
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=21.69 E-value=48 Score=38.78 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=41.5
Q ss_pred EEEEEEeeecCCCCcceeEEEecCCCCCCCcEEEEEEEeeeccccccCCCccceEEEEEee
Q psy17025 594 EAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYTWLP 654 (2010)
Q Consensus 594 ~~~t~V~yHnk~P~f~DEiKI~LP~~l~~~hHLLFTFyHvsc~~k~~~~~~et~vGyawLP 654 (2010)
...|.|..++.+|.|.+++.+.+|..--....|.|+.|+..-- .....+|.+.+|
T Consensus 56 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~------~~~~~iG~~~i~ 110 (296)
T 1dqv_A 56 KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF------SRHDLIGQVVLD 110 (296)
T ss_dssp CEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS------SCCCEEEEEECC
T ss_pred eEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCC------CCCceEEEEEec
Confidence 3567888889999999999999886543456899999985321 123578998886
No 78
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.17 E-value=1.2e+03 Score=28.59 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=30.5
Q ss_pred CChhHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q psy17025 1568 NSPNLRLTWLANMAQKHMERNNHTEAGMCLVHS 1600 (2010)
Q Consensus 1568 ~~PdLrl~wL~~La~~H~~~~n~~EAa~cl~h~ 1600 (2010)
..|++.+.|...++.+|...++|.||+.|+.-+
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 679999999999999999999999999998843
No 79
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=20.72 E-value=3.2e+02 Score=32.04 Aligned_cols=112 Identities=17% Similarity=0.109 Sum_probs=66.4
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHhhcccc--ccccchhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q psy17025 1392 SVMKILLHAFSCNQSTAVMQSMFSTQRSLVFKFPNL--LFDEETEQCADLCLQLLKHSSSNLSLIRTNSAASLYLLMRQN 1469 (2010)
Q Consensus 1392 ~vf~vll~~L~~nQS~~~l~~~faslR~~i~kF~~~--LF~~~~~~c~~l~~~lL~~c~s~~~~lR~~A~~~Lyllmr~n 1469 (2010)
+.+..|+.+|+...+..+.+...-++..++..++.. -|.. ++.+..|+++..+....+|..|+..|..|...+
T Consensus 124 g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-----~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~ 198 (296)
T 1xqr_A 124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-----LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH 198 (296)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-----TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-----CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 466777778876667788888888999988766541 1211 123344555556778999999999998888762
Q ss_pred hhccCchhhhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhh
Q psy17025 1470 FEIGNNFARVKMQVTMSLSSLVGTSQSFNETSLRRSLKTILLYS 1513 (2010)
Q Consensus 1470 f~~~~nf~rvk~q~i~aLs~Lv~~~~~f~e~~lr~sL~~i~~~a 1513 (2010)
-+...- -++.-++-.|-.|+.... .+..+.++..+.+.+
T Consensus 199 ~~~~~~--vv~~g~i~~Lv~LL~~~d---~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 199 PEHKGT--LCSMGMVQQLVALVRTEH---SPFHEHVLGALCSLV 237 (296)
T ss_dssp GGGHHH--HHHTTHHHHHHHHHTSCC---STHHHHHHHHHHHHH
T ss_pred hHHHHH--HHHcCCHHHHHHHHcCCC---hhHHHHHHHHHHHHH
Confidence 211111 123334555666665321 122334555555544
No 80
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=20.52 E-value=9.2e+02 Score=26.93 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHhhccCCh--hHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy17025 1551 DPEMLLDLMYRIAKGYQNSP--NLRLTWLANMAQKHMERNNHTEAGMCLV 1598 (2010)
Q Consensus 1551 DpE~l~dl~~~lA~~Y~~~P--dLrl~wL~~La~~H~~~~n~~EAa~cl~ 1598 (2010)
+.+...+.+..........+ ...+.|...++..+...|++.+|-.++.
T Consensus 90 ~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 139 (293)
T 2qfc_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELK 139 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 44444444433333333232 3466788889999999999999877766
Done!