RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17025
(2010 letters)
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane,
phosphoprotein, nucleotide-binding, alternative splicing;
2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Length = 428
Score = 435 bits (1119), Expect = e-137
Identities = 174/435 (40%), Positives = 252/435 (57%), Gaps = 14/435 (3%)
Query: 1564 KGYQNSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLHMIEEQPYLPLGAVS 1623
K Y ++P LR TWL +MA+ H++ + +EA MC VH ALVAEYL + G +
Sbjct: 1 KSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTR---KGVFRQGCTA 57
Query: 1624 LEFISPNCLEECAVSDDVLSPEQEGVCLGKDFTESGFVCLLEHAASSFYTAGMYETVNNV 1683
I+PN EE ++ +DV + F E + LLE A + A YE + ++
Sbjct: 58 FRVITPNIDEEASMMEDVGMQDVH-------FNEDVLMELLEQCADGLWKAERYELIADI 110
Query: 1684 YKVIFPIVEKSRDYKKLSNIHSKLHDAYVKLYQI--QGKRVFGTYFRVGFYGMKF-GDLN 1740
YK+I PI EK RD+++L++++ LH AY K+ ++ G+R+ GTYFRV F+G F D +
Sbjct: 111 YKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDED 170
Query: 1741 NEEFIYKEPTLTKLPEIFSRLENFYAERFGVNNIMIIKDSNPVDTMSLDPDIAYIQITYV 1800
+E+IYKEP LT L EI RL Y+++FG N+ +I+DS V+ LD AYIQ+T+V
Sbjct: 171 GKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHV 230
Query: 1801 EPYFENYEKRYRETHFEQNFNIKTFMYATPFTTTGKAHGELHEQYKRKTILTTATHFPYV 1860
P+F+ E + R+T FE++ NI+ FM+ PFT TGK G + EQ KR+TILT FPYV
Sbjct: 231 IPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYV 290
Query: 1861 KTRIQVVDRKQIILTPIEVAIEDIQKKTQELSNSIRQEPPDPKILQMVLQGCIGTTVNQG 1920
K RI V+ + L PIEVAI+++ KK EL D LQ+ LQG + VN G
Sbjct: 291 KKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAG 350
Query: 1921 PMEMAVVFLSDLLDGEKSPTKLQNKLRLCFKDFSKKCCDALRKNKTLIGPDQKDYQKELE 1980
P+ A FL D + ++ P L+ F+ F + C AL N+ LI DQ +YQ+E++
Sbjct: 351 PLAYARAFLDD-TNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMK 409
Query: 1981 RNYHRFTDKLMPLIT 1995
NY +L ++
Sbjct: 410 ANYREMAKELSEIMH 424
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK
guanine nucleotide exchange factors; 2.70A {Homo sapiens}
PDB: 3b13_A
Length = 436
Score = 360 bits (924), Expect = e-111
Identities = 77/467 (16%), Positives = 156/467 (33%), Gaps = 58/467 (12%)
Query: 1541 DTVKMKEFQEDPEMLLDLMYRIAKGYQ--NSPNLRLTWLANMAQKHMERNNHTEAGMCLV 1598
+ M + +D M + Y+ N + + +L + H++ +N+TEA L+
Sbjct: 2 ECGDMTDESKDNRM--SCTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLL 59
Query: 1599 HSAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQEGVCLGKDFTES 1658
L+ SD+ + + T
Sbjct: 60 LHTWLL-------------------------------KWSDEQCASQVMQTGQQHPQTHR 88
Query: 1659 GFVC-LLEHAASSFYTAGMYETVNNVYKVIFPIVEK-SRDYKKLSNIHSKLHDAYVKLYQ 1716
L E F M+E ++ K + E DY+ LS + Y +
Sbjct: 89 QLKETLYETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYESI-- 146
Query: 1717 IQGKRVFGTYFRVGFYGMKFG-DLNNEEFIYKEPTLTKLPEIFSRLENFYAERFGVNNIM 1775
++ R YF VG+YG F L N+ FIY+ + + +L +
Sbjct: 147 MKILRPKPDYFAVGYYGQGFPSFLRNKVFIYRGKEYERREDFQMQLMTQFPNAE------ 200
Query: 1776 IIKDSNPVDTMSLDPDIAYIQITYVEPYFENYEKRYRE------THFEQNFNIKTFMYAT 1829
+ ++ + YIQ V+P + + + + +F ++ ++ F Y+
Sbjct: 201 KMNTTSAPGDDVKNAPGQYIQCFTVQPVLDEHPRFKNKPVPDQIINFYKSNYVQRFHYSR 260
Query: 1830 PFTTTGK-AHGELHEQYKRKTILTTATHFPYVKTRIQVVDRKQIILTPIEVAIEDIQKKT 1888
P E + +T TA P + +VV Q ++P+E AIE +
Sbjct: 261 PVRRGTVDPENEFASMWIERTSFVTAYKLPGILRWFEVVHMSQTTISPLENAIETMSTAN 320
Query: 1889 QELSNSIRQEPPDPKI----LQMVLQGCIGTTVNQGPMEMAVVFLS-DLLDGEKSPTKLQ 1943
+++ I Q D + L M+L G + V G + F + + +
Sbjct: 321 EKILMMINQYQSDETLPINPLSMLLNGIVDPAVMGGFAKYEKAFFTEEYVRDHPEDQDKL 380
Query: 1944 NKLRLCFKDFSKKCCDALRKNKTLIGPDQKDYQKELERNYHRFTDKL 1990
L+ ++ ++ + + + + +E + K+
Sbjct: 381 THLKDLIAWQIPFLGAGIKIHEKRVSDNLRPFHDRMEECFKNLKMKV 427
>3vhl_A Dedicator of cytokinesis protein 8; signal transduction, guanine
nucleotide exchang factor, GTPA signaling protein; 2.08A
{Mus musculus}
Length = 288
Score = 321 bits (823), Expect = 1e-99
Identities = 158/277 (57%), Positives = 213/277 (76%), Gaps = 1/277 (0%)
Query: 1718 QGKRVFGTYFRVGFYGMKFGDLNNEEFIYKEPTLTKLPEIFSRLENFYAERFGVNNIMII 1777
KR+FGTYFRVGFYG +FGDL+ +EF+YKEP +TKLPEI RLE FY + FG + +I
Sbjct: 8 DHKRMFGTYFRVGFYGSRFGDLDEQEFVYKEPAITKLPEISHRLEGFYGQCFGAEFVEVI 67
Query: 1778 KDSNPVDTMSLDPDIAYIQITYVEPYFENYEKRYRETHFEQNFNIKTFMYATPFTTTGKA 1837
KDS PVD LDP+ AYIQIT+VEPYF+ YE + R T+FE+NFN++ FMY TPFT G+
Sbjct: 68 KDSTPVDKTKLDPNKAYIQITFVEPYFDEYEMKDRVTYFEKNFNLRRFMYTTPFTLEGRP 127
Query: 1838 HGELHEQYKRKTILTTATHFPYVKTRIQVVDRKQIILTPIEVAIEDIQKKTQELSNSIRQ 1897
GELHEQ++R T+LTT FPY+KTRI+V +++ +LTPIEVAIED++KKT +L+ + Q
Sbjct: 128 RGELHEQHRRNTVLTTMHAFPYIKTRIRVSQKEEFVLTPIEVAIEDMKKKTLQLAVATHQ 187
Query: 1898 EPPDPKILQMVLQGCIGTTVNQGPMEMAVVFLSDLLDGEKSPTKLQNKLRLCFKDFSKKC 1957
EPPD K+LQMVLQG +G TVNQGP+E+A VFL++ + + + NKLRLCFK+F +C
Sbjct: 188 EPPDAKMLQMVLQGSVGATVNQGPLEVAQVFLAE-IPADPKLYRHHNKLRLCFKEFIMRC 246
Query: 1958 CDALRKNKTLIGPDQKDYQKELERNYHRFTDKLMPLI 1994
+A+ KN+ LI +Q++YQ+EL++NY++ D L P+I
Sbjct: 247 GEAVEKNRRLITAEQREYQQELKKNYNKLRDSLRPMI 283
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1,
phosphoinositide specificity, guanine exchan factor, RHO
GTPase, cytoskeleton, cell migration; 2.37A {Homo
sapiens}
Length = 220
Score = 157 bits (399), Expect = 1e-43
Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 26/206 (12%)
Query: 533 TNLPHYLYRNLLFVYPKEINFT-GRTGSARNLTVKVQLMYGETPESALPAIFGKSSCPEF 591
+++P RN ++V + +F G +A+N+ V V + + L + + E
Sbjct: 19 SHMPGD-VRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDED--GKRLEHVIFPGAGDEA 75
Query: 592 TTEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPVGYT 651
+E + + Y K P + +K+ +P ++ HL FTF H S Q ++ E
Sbjct: 76 ISEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDS--KDKSEKIFALA 133
Query: 652 WLPLLKDGQLQLND--FCLPV-----TLEAPPPNY-------------SYITPDVLLPGL 691
++ L++ L D L V Y + + L
Sbjct: 134 FVKLMRYDGTTLRDGEHDLIVYKAEAKKLEDAATYLSLPSTKAELEEKGHSATGKSMQSL 193
Query: 692 KWVDNHKSIFNVVLSAASSIHPQDTH 717
K F + S+ Q+
Sbjct: 194 GSCTISKDSFQISTLVCSTKLTQNVD 219
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 3e-10
Identities = 91/657 (13%), Positives = 192/657 (29%), Gaps = 179/657 (27%)
Query: 1393 VMKILLHAF----SCNQSTAVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQLLKHSS 1448
++ + AF C + +S+ S + + +++ ++ L
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKE-----EIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 1449 SNL------SLIRTNSAASLY-LLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQSFNETS 1501
+ ++R N Y LM + + L +Q F + +
Sbjct: 76 EEMVQKFVEEVLRIN-----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 1502 LRR-----SLKTILLYSEQDRELEDTTFPEQVKDLVFNLH-M------IL-SDTVKMKEF 1548
+ R L+ LL EL K+++ + + + D +
Sbjct: 131 VSRLQPYLKLRQALL------ELRPA------KNVL--IDGVLGSGKTWVALDVCLSYKV 176
Query: 1549 QEDPEMLLDLMYRIAKGYQNSPNLRLTWLAN----MAQKHMERNNHTEAGMCLVHSAALV 1604
Q + ++ + NSP L L + R++H+ +HS
Sbjct: 177 QCKMD---FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-- 231
Query: 1605 AEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQEGVCLGKDFTESGFVC-- 1662
AE +++ +PY NCL V +V + + F C
Sbjct: 232 AELRRLLKSKPY------------ENCL---LVLLNVQNAK-----AWNAF---NLSCKI 268
Query: 1663 LLEHAASSFYTAGMYETVNNVYKVIFPIVEKSRDYKKLSNIHSKLHDAYVKLYQIQGKRV 1722
LL T +V + + + L + L + K +
Sbjct: 269 LL--------------TTRFK-QVTDFLSAATTTHISLDHHSMTLTPD-------EVKSL 306
Query: 1723 FGTYFRVGFYGMKFGDLNNEEFIYKEPTL-----TKLPEIFSRLENFYAERFGVNNI-MI 1776
Y + DL E + P + + + +N+ + + + I
Sbjct: 307 LLKYL-----DCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTI 358
Query: 1777 IKDSNPVDTMSLDPDIAYIQITYVEPYFENYEKRYRE-THFEQNFNI--KTFM---YATP 1830
I+ S ++ L+P Y K + + F + +I +
Sbjct: 359 IESS--LN--VLEPA--------------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 1831 FTTTGKAHGELH------EQYKRKTILTTATHFPYVKTRIQVVDRKQI--ILTPIEVAIE 1882
+ +LH +Q K TI + Y++ ++++ + + + ++
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTI---SIPSIYLELKVKLENEYALHRSI------VD 451
Query: 1883 DIQKKTQELSNSIRQEPPDPKILQMVLQGCIG---TTVNQGPMEMAVVFLSDLLDGEKSP 1939
S+ + D IG + E +F LD
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSH-----IGHHLKNIEHP--ERMTLFRMVFLDFRF-- 502
Query: 1940 TKLQNKLRLCFKDFSKKCCDALRKNKTLIGPDQKDYQKELERNYHRFTDKLMPLITF 1996
L+ K+R D + N TL K Y+ + N ++ + ++ F
Sbjct: 503 --LEQKIR---HDSTAWNASGSILN-TLQ--QLKFYKPYICDNDPKYERLVNAILDF 551
Score = 63.7 bits (154), Expect = 6e-10
Identities = 98/613 (15%), Positives = 186/613 (30%), Gaps = 175/613 (28%)
Query: 928 KSMVEHLSITETMDSPRKMRFSDQYMEDI---------------------ATLVTSFTSD 966
+ V++ + D P+ + S + ++ I +V F +
Sbjct: 27 DAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 967 IIAYCHKDYKL------TRSMNTSLAFFLFDLFSFADRSF--VFLLIKTYYKHVT--AKI 1016
++ +YK T S+ ++ DR + + K +V+
Sbjct: 86 VLR---INYKFLMSPIKTEQRQPSMMTRMYI--EQRDRLYNDNQVFAK---YNVSRLQPY 137
Query: 1017 SSLPDSIALSNLKLE-FLRV--------------VCSHEHFVPLNLPFGTVF-----TAN 1056
L AL L+ + + VC + V + F +F N
Sbjct: 138 LKLRQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFK-IFWLNLKNCN 193
Query: 1057 SSSTSPSPSTN-------SSTSQSSYMSSLISKDKSPFAELSLEFKQQHY---LVGLILS 1106
S T + TS+S + S++ + S AEL K + Y L L+L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLL 251
Query: 1107 EFAAMIEVQNHN----FHNRIVTLIT--------DLMASHDCDAR-------FVEPEAKA 1147
VQN F+ L+T L A+ E K
Sbjct: 252 ------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK- 304
Query: 1148 RVAALYLPYIALTMDMLPNLHSGNDVSRIINPTSEESVESGLNQSVAMAIAGTSM--FGI 1205
+L L Y+ LP NP ++I S+
Sbjct: 305 ---SLLLKYLDCRPQDLPREVLT------TNP-------------RRLSIIAESIRDGLA 342
Query: 1206 KTDNYKLF---QQTRKVNLSMDNTKNILI--CF--LWILKNMDKDI----LKQWWAEMPV 1254
DN+K + T + S++ + F L + I L W ++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIK 401
Query: 1255 SRLNQLLQVLGLCV--SCFEYKGKTKVKPVASVSQKFANKTVDMKSKLEDVILGQGSARS 1312
+ ++ V+ S E + K + S+ + K + + L I+ +
Sbjct: 402 ---SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA-LHRSIVDHYNIP- 456
Query: 1313 EMMQRRKDKNLGMDKLRWRKDQMIYK------STLDMSEK----PKTKL-----ERNLNL 1357
+ D + D + DQ Y ++ E+ L E+ +
Sbjct: 457 ----KTFDSD---DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 1358 EGNLATEVSFTILNTL-ELIV---QVVQQCDHLHGLLGSVMKILL---HAFSCNQSTAVM 1410
+ A S +ILNTL +L + L+ +++ L C++ T ++
Sbjct: 510 DS-TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Query: 1411 QSMFSTQRSLVFK 1423
+ + +F+
Sbjct: 569 RIALMAEDEAIFE 581
Score = 63.3 bits (153), Expect = 7e-10
Identities = 119/791 (15%), Positives = 226/791 (28%), Gaps = 260/791 (32%)
Query: 33 DFILQQSLLIDRDPLKHLLEFPVDDIQVCVLPRKIRTVKPLLPKEPLSEL--EPHVRECI 90
DF + +D L + VD+ + +++ L KE + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI---LSKEEIDHIIMSKDAVS-- 62
Query: 91 ECYTRNWIYVDYRYRHFSTSSWFIDRTTLASNLPRQEFEVDMTPLPNGRVSPQPSYKSQS 150
W + + Q+F ++ + +YK
Sbjct: 63 GTLRLFWTLLSKQEEMV------------------QKFVEEVL---------RINYK--- 92
Query: 151 SRDSRVSSSGGDTPRGSWASFDLLNSVSDPLIVSLLERIPSETIDQLNEVTRQEGRQDVL 210
+ L+ I +E ++D L
Sbjct: 93 -----------------F----------------LMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 211 FSLYSTYQDDEPVEKRCIPNLPCEPLGHRILIKCLQLKLELDVEP------MF----ATL 260
Y D++ K + L + L + L EL + +
Sbjct: 120 ------YNDNQVFAKYNVSRLQP----YLKLRQALL---ELRPAKNVLIDGVLGSGKTWV 166
Query: 261 ALYDCRERKKVSENFYFDMNSENNRHMLSPHIPYVDCSTTSHACILNITHASPDLFLVIK 320
AL C KV F I +++ + SP+ L +
Sbjct: 167 ALDVCLS-YKVQCKMDF-------------KIFWLNLKNCN----------SPETVLEML 202
Query: 321 LDKVLQGDINECAEPYMKDERNIEKVRQNAAQSCERLGKY--RMPFAWTAVYLMNVINGV 378
+ Q D N + D + K+R ++ Q L + P+ + L+NV
Sbjct: 203 QKLLYQIDPNWTSRS---DHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNV---- 253
Query: 379 SNIDGDCDSQSSNSLDRKSSGGAFDQLRKRASDSSTL--TRRGSLERRSNSSDKRVSWNL 436
Q++ + + AF+ L + L TR K+V+
Sbjct: 254 ---------QNAKAWN------AFN-LSCK-----ILLTTR-----------FKQVT--- 278
Query: 437 DDLDSFRPVTLTV----SSFFKQESDKLRDEDLYKFLQDLKKPCSLLKKLKSIPGCLKLD 492
D L + +++ + E L LLK L P L
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSL-----------------LLKYLDCRPQDL--- 318
Query: 493 ISPCPDEVKWCLTPELAEIVPRIGD-----------KGRPIKEILEFPLRETNLPHYLYR 541
P EV L+ I I D + I+E L L YR
Sbjct: 319 ----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN--VLEPAEYR 372
Query: 542 NL---LFVYPKEINFTGRTGSARNLTVKV-QLMYGETPESALPAI---FGKSSCPEFTTE 594
+ L V+P ++ + L++ + +S + + K S E +
Sbjct: 373 KMFDRLSVFPPSA----------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 595 AYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFYHISCQKKLEQNTVETPV--GY-- 650
T I + E+K++L H + Y+I K + + + P Y
Sbjct: 423 ESTISIPS-----IYLELKVKL-ENEYALHRSIVDHYNI--PKTFDSDDLIPPYLDQYFY 474
Query: 651 TWLP--LLKDGQLQLNDFCLPVTLEAPPPNYSYITPDVLLPGLKWVDNHKSIFNVVLSAA 708
+ + L + V L ++ ++ + W + SI N +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFL-----DFRFLEQKIRHDSTAW-NASGSILNTL---- 524
Query: 709 SSIHPQDTHIHE-FLSICDKLETGGVVSNRLPEINFEAELRQKILNLVNCKLEPLIKFLT 767
Q ++ + ICD + N + ++F L + NL+ K L++
Sbjct: 525 -----QQLKFYKPY--ICDNDPKYERLVNAI--LDF---LPKIEENLICSKYTDLLRIAL 572
Query: 768 IILNKLIYLMT 778
+ ++ I+
Sbjct: 573 MAEDEAIFEEA 583
Score = 61.0 bits (147), Expect = 4e-09
Identities = 90/602 (14%), Positives = 181/602 (30%), Gaps = 147/602 (24%)
Query: 532 ETNLPHYLYRNLLFVYP----KEINFTGRTGSARNLTVK--VQLMYGE-TPESALPAIF- 583
ET Y Y+++L V+ + +++ K + + S +F
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 584 -----GKSSCPEFTTEA--------YTSVIYHNKCPYVSDEIKI-QLPPTLEDKHHLLFT 629
+ +F E + + + P + + I Q D +F
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--VFA 127
Query: 630 FYHIS-------CQKKLEQNTVETPV--------GYTWLPL--LKDGQLQLNDFCLPV-- 670
Y++S ++ L + V G TW+ L ++Q +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK-MDFKIFW 186
Query: 671 -TLEAPPPNYSYITPDVLLPGLKWVDNHKSIFNVVLSAASSIHPQDTHIHEFLSICDKLE 729
L+ + +P+ +L L+ K ++ + + S SI +L
Sbjct: 187 LNLK------NCNSPETVLEMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL- 234
Query: 730 TGGVVSNRLPEINFEAEL-------RQKILNL--VNCKLEPLIKFLT---IILNKLIYLM 777
L +E L K N ++CK+ L+ T + + L
Sbjct: 235 -----RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI--LL--TTRFKQVTDFLSAAT 285
Query: 778 TQPLCMNGQSLCISQTVFEVIGLIIKFVSAFSEDE-SDACGRHPLLTSYVTYQCCIPHPD 836
T + ++ S+ ++ EV L++K++ +D + +P S + +
Sbjct: 286 TTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-ESIRDGLA 342
Query: 837 LEQ--KRSNMQRQKSSSNPDLQLDIEVQ-AYNARGLDRTCSMKAGQCADNFASGSKLNLC 893
K N + + ++ + V R + S+ F +
Sbjct: 343 TWDNWKHVNCDKLTTI----IESSLNVLEPAEYRKMFDRLSV--------FPPSA----- 385
Query: 894 KILHEEIGLQWVVSSSTARENAMSHAWFFFDLMAKSMVE-------------HLSITETM 940
I + L W + ++ L S+VE +L + +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNK------LHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 941 DSPRKM--RFSDQYME----DIATLVTSFTSDIIAYCHKDYKLTRSMNTSLAFFLFDLFS 994
++ + D Y D L+ + Y H + L + LF
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPE----RMTLFR 494
Query: 995 --FADRSFVFLLIKTYYKHVTAKISSLPDSIALSNLKL----------EFLRVVCSHEHF 1042
F D F+ I+ A S L L LK ++ R+V + F
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNT---LQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 1043 VP 1044
+P
Sbjct: 552 LP 553
Score = 58.3 bits (140), Expect = 3e-08
Identities = 90/635 (14%), Positives = 182/635 (28%), Gaps = 196/635 (30%)
Query: 17 PHYFQ--ITDVVDPIDYEDFILQQSLLIDRDPLKHLLEFPVDDIQV-----CVLPRKIRT 69
+ + + D D +D +S+L + + H++ +L ++
Sbjct: 23 SVFEDAFVDNF-DCKDVQDMP--KSILSKEE-IDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 70 VKPLLPKEPLSE-----LEPHVRECIECYTRNWIYVDYRYRHFSTSSWFIDRTTLASNLP 124
V+ + +E L + P E + +Y++ R R ++ + F N+
Sbjct: 79 VQKFV-EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-----NVS 132
Query: 125 RQEFEVDMTPLPNG--RVSPQP---------SYKS----QSSRDSRVSSSGGDTPRGSWA 169
R + L + P S K+ +V + W
Sbjct: 133 RLQ---PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF--KIFWL 187
Query: 170 SFDLLNSVSDPLIVSLLERIPSETIDQLNEVTRQ-----EGRQDVLFSLYSTYQDDEPVE 224
+ NS P ++ L ++ Q R D ++ +
Sbjct: 188 NLKNCNS-------------PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 225 KRCIPNLPCEPLGHRILIKCLQLKLELD-VEPMFATLALYD--CR----ERKK-----VS 272
+R L + CL L L V+ ++ C+ R K +S
Sbjct: 235 RRL--------LKSKPYENCL---LVLLNVQNA-KAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 273 ENFYFDMNSENNRHMLSPH------IPYVDCSTTS---HACILNITHASPDLFLVIKL-D 322
++ +++ L+P + Y+DC N P + +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-----P---RRLSIIA 334
Query: 323 KVLQGDINECAEPYMKDERNIEKVRQNAAQSCERL--GKYRMPFAWTAVYLMNV-I-NGV 378
+ ++ + + + N +K+ S L +YR F +V+ + I +
Sbjct: 335 ESIRDGLAT-WDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 379 -----SNIDGDCDSQSSNSLDRKSSGGAFDQLRKRASDSSTLT-------------RRGS 420
++ N L + S L ++ ST++ +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYS-------LVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 421 LERRS----NSSDKRVSWNL--DDLDSFRPVTLTVSSFFK------------QESDKLRD 462
L R N S +L LD + F+ + R
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQY---------FYSHIGHHLKNIEHPERMTLFRM 495
Query: 463 EDL-YKFLQDLKKPCSLLKKLKSIPGCLKLDISPCPDEVKWCLTPELAE----------- 510
L ++FL+ +K++ D W + +
Sbjct: 496 VFLDFRFLE---------QKIRH-------------DSTAWNASGSILNTLQQLKFYKPY 533
Query: 511 IVPRIGDKGRPIKEILEFPLR-ETNLPHYLYRNLL 544
I R + IL+F + E NL Y +LL
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Score = 47.5 bits (112), Expect = 5e-05
Identities = 98/642 (15%), Positives = 191/642 (29%), Gaps = 192/642 (29%)
Query: 453 FKQESDKLRDEDLYK-FLQDLKK--PCS-LLKKLKSIPGCLKLD-ISPCPDEVK------ 501
F+ + + +D+ F C + KSI ++D I D V
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 502 WCLTPELAEIVPR-IGDKGRP----IKEILEFPLRETNLPHYLY---RNLLF----VYPK 549
W L + E+V + + + R + ++ R+ ++ +Y R+ L+ V+ K
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 550 -----EINFTGRTGSARNLT----VKVQLMYG-------------ETPESALP-AIF--- 583
+ + L V + + G + + IF
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 584 -GKSSCPEFTTEAYTSVIYHNKCPYVS------------DEIKIQLPPTLEDKHH---LL 627
+ PE E ++Y + S I+ +L L+ K + LL
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 628 -------------FTFYHISCQ-------KKL-----EQNTVETPVGYTWLPLLKDGQLQ 662
F SC+ K++ T + + + L D
Sbjct: 249 VLLNVQNAKAWNAFNL---SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 663 LNDFCLPVTLEAPPPNYSYITPDVLLPGLKWVDNHKSIFNVVLSAASSIHPQDTHIHEFL 722
L L + P P L SI A SI +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRL-----------SII------AESIRDGLATWDNWK 348
Query: 723 SI-CDKLETGGVVSNRLPEINFEAELRQKILNLVNCKLEPLIKFLTIILNKLIYLMTQPL 781
+ CDKL T ++ + L + AE R+ L + ++ T L
Sbjct: 349 HVNCDKLTT--IIESSLNVLE-PAEYRKMFDRLS-------------VFPPSAHIPTILL 392
Query: 782 CMNGQSLCISQTVFEVIGLIIKFVSAFSEDESDACGRHPLLTSYVTYQCCIPHPDLEQKR 841
+ + + + + ++ L+ +K+
Sbjct: 393 SL----------------IWFDVIKSDVMVVVNKLHKYSLV----------------EKQ 420
Query: 842 SNMQRQKSSSNPDLQLDIEVQAYNARGLDRTC----SMKAGQCADNFASGSKLNLCKILH 897
+ + S P + L+++V+ N L R+ ++ +D+ L + +
Sbjct: 421 PK---ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL---IPPYLDQYFY 474
Query: 898 EEIG--LQWVVSSSTARENAMSHAWF---FFD---LMAKSMVEHLSI-----TETMDSPR 944
IG L+ E+ F F D L K + H S +++ +
Sbjct: 475 SHIGHHLK-------NIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSILNTLQ 525
Query: 945 KMRFSDQYMEDIATLVTSFTSDIIAYCHK-DYKLTRSMNTSL 985
+++F Y+ D + I+ + K + L S T L
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 2e-08
Identities = 98/657 (14%), Positives = 173/657 (26%), Gaps = 284/657 (43%)
Query: 441 SFRPVTLT---------V--SSFFKQESDKLRDEDLYKFLQDLKKPCSLLKKLKSIPGCL 489
S RP+TL+ V +SFF +L+++ F + L +P
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIAS--QLQEQ----FNKILPEP-------------- 44
Query: 490 KLDISPCPDEVKWCLTPE-LAEIVPR-IG--------DKGRPIKEIL-----EFP---LR 531
+ DE P AE+V + +G K ++L EF L
Sbjct: 45 -TEGFAADDE------PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 532 ETNLPHYLYRNLLFVYPKEIN---------FTGRTGSARNLTVKVQLMYGETPESALP-- 580
++ H L LL + T R + R + SAL
Sbjct: 98 GNDI-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD--------KKSNSALFRA 148
Query: 581 ---------AIFGKSSCPEFTTEAYTSVIYHNKCPYVSDEIKIQLPPTLEDKHHLLFTFY 631
AIFG + Y +E L D L+ Y
Sbjct: 149 VGEGNAQLVAIFGGQGNTD---------------DYF-EE--------LRD----LYQTY 180
Query: 632 HISCQKKLEQNTVETPVGYTWLPLLKD------GQLQLNDFCLPVTLEAPPPNYSYITPD 685
H L+ D L L + +
Sbjct: 181 H---------------------VLVGDLIKFSAETLS--------ELIRTTLDAEKVFTQ 211
Query: 686 VLLPGLKWVDNHKSIFNVVLSAASSIHPQDTHIHEFLSICDKLETGGVVSNRLPEINFEA 745
L L+W++N P +T ++L P
Sbjct: 212 GL-NILEWLEN----------------PSNTPDKDYLLSI-------------P------ 235
Query: 746 ELRQKILNLVNCKLEPLIKFLTIILNKLIYLMT-QPLCMN-GQSLCISQTVFEVI-GLII 802
++C PLI + + + Y++T + L G+ + GL+
Sbjct: 236 ---------ISC---PLI-GVIQLAH---YVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 803 KFVSAFSEDESDACGRHPLLTSYVTY--------QCCIPHPDLEQKRSNMQRQKSSSN-- 852
A ++ + +T P+ L + S N
Sbjct: 280 AVAIAETDSWESF---FVSVRKAITVLFFIGVRCYEAYPNTSLPPS----ILEDSLENNE 332
Query: 853 --PDLQLDIEVQAYNARGLDRTCSMKA-GQCADNFASGSKLNLCKILHEEIGL-----QW 904
P L I L + + + +G ++ EI L
Sbjct: 333 GVPSPMLSI-------SNLTQEQVQDYVNKTNSHLPAGKQV--------EISLVNGAKNL 377
Query: 905 VVSSSTARENAMSHAWFFFDLMA-KSMVEHLSITETMD------SPRKMRFSDQ------ 951
VVS L + +D S RK++FS++
Sbjct: 378 VVSGPPQ------------SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 952 -----YMEDIATLVTS-FTSDIIAYCHKDYKLT----------RSMNTSLAFFLFDL 992
+ + L+ + +++ KD ++ R ++ S++ + D
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Score = 58.5 bits (141), Expect = 2e-08
Identities = 85/476 (17%), Positives = 149/476 (31%), Gaps = 166/476 (34%)
Query: 1603 LVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQEGVCLGKDFTESGFVC 1662
LV ++L + + P+ + D VL+ +CL +F E+ ++
Sbjct: 60 LVGKFLGYVSSL------------VEPS---KVGQFDQVLN-----LCL-TEF-ENCYLE 97
Query: 1663 LLE-HAASSFYTAGMYETVNNVYKVIFPIVEKSRDY--------KKLSNIH-SKLHDA-- 1710
+ HA ++ T+ ++I ++Y + S L A
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELI-------KNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 1711 --YVKLYQIQGKRVFG------TYFR--VGFYGMKFGDLNNEEFIYK-EPTLTKLPEIFS 1759
+L I FG YF Y + + I TL++L
Sbjct: 151 EGNAQLVAI-----FGGQGNTDDYFEELRDLYQTYHVLV--GDLIKFSAETLSELIRTTL 203
Query: 1760 RLENFYAERFGVNNIMIIKD--SNPVDTMSLDPDIAY----------IQITYVEPYFENY 1807
E + + G+N I + NP +T PD Y I + +Y
Sbjct: 204 DAEKVFTQ--GLN----ILEWLENPSNT----PDKDYLLSIPISCPLIGVIQ----LAHY 249
Query: 1808 E---KRYRETHFEQNFNIKTFMYATPFTTTGKAHG--------------ELHEQYKRKTI 1850
K T E +K TG + G ++
Sbjct: 250 VVTAKLLGFTPGELRSYLKG--------ATGHSQGLVTAVAIAETDSWESFFVSVRK--A 299
Query: 1851 LTTATH--------FPYVKTRIQVV----DRKQIILTPIEVAIEDI-QKKTQELSNSIRQ 1897
+T +P ++ + + + +P+ ++I ++ Q++ Q+ N
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKTNS 358
Query: 1898 EPPDPKILQMVLQGCIGTTVNQGPMEMAVVFLSDLLDGEKSPTKLQNKLRLCFKDFSKKC 1957
P K +++ L VN G + VV S G P L L
Sbjct: 359 HLPAGKQVEISL-------VN-GA-KNLVV--S----G--PPQSLY---GLNL------- 391
Query: 1958 CDALRKNKTLIGPDQKD--YQKELERNYHRFTDKLMPLIT--FKHIDKLMPNARNL 2009
LRK K G DQ + + + +RF L P + F H L+ A +L
Sbjct: 392 --TLRKAKAPSGLDQSRIPFSERKLKFSNRF---L-P-VASPF-H-SHLLVPASDL 438
Score = 55.8 bits (134), Expect = 2e-07
Identities = 89/605 (14%), Positives = 164/605 (27%), Gaps = 218/605 (36%)
Query: 669 PVTLEAPPPNYSYITPDVLLPGLKWV--DNHKSIFNVVLSAASSIHPQD---THIHE--- 720
P+TL ++ + +L+P + + FN +L + D T E
Sbjct: 8 PLTL-----SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 721 -FLS-ICDKLETGG------VVSNRLPEINFEAE-LRQK-----ILNLVNCKLEPLIKFL 766
FL + +E V++ L E FE L L+ L+K
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTE--FENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 767 TIILNKLIY-----LMTQPLCMNGQSLCISQTVFEVI--GLIIKFVSAF-----SE---D 811
+I N Y + +P S +F + G + V+ F ++ +
Sbjct: 121 ELIKN---YITARIMAKRPFDKKSNSA-----LFRAVGEG-NAQLVAIFGGQGNTDDYFE 171
Query: 812 ESDACGRHPLLTSYVTYQCCIPHPDLEQKRSNMQRQKSSSNPDLQLDIEVQAYNARGLD- 870
E L Y TY + DL + + + + D + +GL+
Sbjct: 172 E--------LRDLYQTYHVLVG--DLIKFSAETLSELIRTTLD------AEKVFTQGLNI 215
Query: 871 ----------------RTC--SMKA-G--QCADNFASGSKLNLCKIL---HEEI--GLQW 904
+ S G Q A ++ + K+L E+ L+
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLA-HY-----VVTAKLLGFTPGELRSYLKG 269
Query: 905 VVSSS----TARENAMSHAWFFFDLMAKSMVE---------HLSITETMDSPRKMRFSDQ 951
S TA A + +W F + + + + + T P + S +
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 952 YMEDIAT---LVTSFTSDIIAYCHKDYKLTRSMNTSL------AFFLFDLFSFADRSFVF 1002
E + + +++ T + + N+ L L + ++ V
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQ------DYVNKTNSHLPAGKQVEISLVN----GAKNLV- 378
Query: 1003 LLIKTYYKHVTAKISSLPDSIALSNLKLEFLRV------------------VCSHEHFVP 1044
+S P S L L L + S+ F+P
Sbjct: 379 -------------VSGPPQS--LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR-FLP 422
Query: 1045 LNLPFGTVFTANSSSTSPSPSTNSSTSQSSYMSSLISKDKSPFAELSLEFKQQH-----Y 1099
+ PF S + + ++ F + Y
Sbjct: 423 VASPF----------------------HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 1100 ----------LVGLILSEFAAMIEVQNHNFHNRIVTLITDLMASH--DCDARFVEPEAKA 1147
L G I I + T A+H D P +
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKW-----ETTTQFKATHILDFG-----PGGAS 510
Query: 1148 RVAAL 1152
+ L
Sbjct: 511 GLGVL 515
Score = 53.1 bits (127), Expect = 1e-06
Identities = 95/583 (16%), Positives = 183/583 (31%), Gaps = 163/583 (27%)
Query: 1387 HGLLGSVMKI--LLHAFSCNQSTAVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQLL 1444
HG L V+ + F +Q +Q F + L D+E A+L + L
Sbjct: 13 HGSLEHVLLVPTASF-FIASQ----LQEQF--NKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 1445 KHSSSNLSLIRTNSAASLYLLMRQNFEI----GNNFARVKMQVTMSLSSLVGTSQSFNET 1500
+ SS + + + L FE GN+ + +L N+T
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-----------IHALAAKLLQENDT 114
Query: 1501 SLRRSLKTILLYSEQDRELEDTTFPEQVKDLVFNLHMILSDTVK-MKEF--QEDPEMLLD 1557
+L ++ + I Y R + F ++ +F + + + F Q + + +
Sbjct: 115 TLVKTKELIKNYITA-RIMAKRPFDKKSNSALFR--AVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 1558 -L--MYRIAKGYQNSPNLRLTWLANMAQKHMERNNHTEAGMCLVHSAAL-VAEYLHMIEE 1613
L +Y+ Y + + A+ + T V + L + E+L
Sbjct: 172 ELRDLYQT---YH--VLVG-DLIKFSAE-TLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 1614 QP---YLPLGAVSLEFISPNCLEECA---VSDDVL--SPEQEGVCLGKDFTESGFVC--- 1662
P YL +S I + + A V+ +L +P + + + +
Sbjct: 225 TPDKDYLLSIPISCPLI---GVIQLAHYVVTAKLLGFTPGEL-----RSYLKGATGHSQG 276
Query: 1663 -----LLEHAAS--SFYTAGMYETVNNVYKVIFPI-VEKSRDYKKLSNIHSKLHDAYVKL 1714
+ S SF+ + V V+F I V Y S S L D+ L
Sbjct: 277 LVTAVAIAETDSWESFFVS-----VRKAITVLFFIGVRCYEAYPNTSLPPSILEDS---L 328
Query: 1715 YQIQGKRVFGTY-FRVGFYGMKFGDLNNEEFIYKEPTLTKLPE---IFSRLENFYAERFG 1770
+G + + + + ++++ K T + LP + L N G
Sbjct: 329 ENNEGVP---SPMLSIS--NLTQEQV--QDYVNK--TNSHLPAGKQVEISLVN------G 373
Query: 1771 VNNIMIIKDSNPVDTMSL-----------DPDIAYIQITYVEPYFENYEKRYRETHFEQN 1819
N+++ P L D + I P+ E R+ F
Sbjct: 374 AKNLVV--SGPPQSLYGLNLTLRKAKAPSGLDQSRI------PFSE------RKLKFSNR 419
Query: 1820 F-NIKTFMYATPFTTTGKAHGELHEQYKRKTILTTATHFPYVKTRIQVVDRKQIILTPIE 1878
F + A+PF H L A+ + + + + +
Sbjct: 420 FLPV-----ASPF----------HSHL-----LVPASD-----LINKDLVKNNVSFNAKD 454
Query: 1879 VAI--------EDIQKKTQELSNSIRQEPPDPKILQMVLQGCI 1913
+ I D+ + LS SI +I+ +++ +
Sbjct: 455 IQIPVYDTFDGSDL----RVLSGSI-----SERIVDCIIRLPV 488
Score = 49.7 bits (118), Expect = 1e-05
Identities = 61/276 (22%), Positives = 88/276 (31%), Gaps = 111/276 (40%)
Query: 693 W--VDNHK------SIFNVVLSAASSIHPQDTHIHEFLSICDKLETGGVVSNRLPEINFE 744
W DNH SI ++V++ P + IH F GG R+ E N+
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINN-----PVNLTIH-F---------GGEKGKRIRE-NYS 1689
Query: 745 AELRQKILNLVNCKLEPLIKFLTIILNKLIY------LM----TQPLCMNGQSLCISQTV 794
A + + I++ K E + K + + L TQP + + +
Sbjct: 1690 AMIFETIVD-GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP-AL----TLMEKAA 1743
Query: 795 FEVI---GLIIKFVSAFSEDESDACGRHPL-----LTSY------------VTY-----Q 829
FE + GL I + F G H L L S V Y Q
Sbjct: 1744 FEDLKSKGL-IPADATF-------AG-HSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 830 CCIPHPDLEQKRSN--M------QRQKSSSNPDLQLDIE---------VQA--YNARGLD 870
+P E RSN M + S S LQ +E V+ YN
Sbjct: 1795 VAVPRD--ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN-- 1850
Query: 871 RTCSMKAGQCADNFASGSK--LN-LCKILHEEIGLQ 903
Q A+G L+ + +L I LQ
Sbjct: 1851 -------QQYV---AAGDLRALDTVTNVL-NFIKLQ 1875
Score = 48.9 bits (116), Expect = 2e-05
Identities = 64/453 (14%), Positives = 127/453 (28%), Gaps = 155/453 (34%)
Query: 851 SNPDLQLDIEV---QAYNARGLDRTCSMKAGQCADNFASG----SKLNLC-KILHEEIGL 902
S+ L+ + V + A L + + + FA+ + L K L
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL------ 65
Query: 903 QWVVSSSTARENAMSHAWFFFDLMAKSMVEHLSITETMDSPRKMRFSDQYM--EDIATLV 960
+V SS + + FD + + F + Y+ DI L
Sbjct: 66 GYV--SSLVEPSKVGQ----FDQVLNLCLTE--------------FENCYLEGNDIHALA 105
Query: 961 TSFTSDIIAYCHKDYKLTRSMNTSLAFFLFDLFSFADRSFVFLLIKTYYK--HVTAK-IS 1017
+ D L ++ LIK Y + +
Sbjct: 106 AKLLQE------NDTTLVKTKE---------------------LIKNYITARIMAKRPFD 138
Query: 1018 SLPDSIAL--------SNLKLEF------------LRVVCSHEHFVPLNLPFGTVFTANS 1057
+S AL + L F LR + ++ + L S
Sbjct: 139 KKSNS-ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL--YQTYHVLVGD----LIKFS 191
Query: 1058 SSTSPSPSTNSSTSQSSY------MSSLISKDKSP------FAELSLEFKQQHYLVGLI- 1104
+ T + ++ + + L + +P +S L+G+I
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP------LIGVIQ 245
Query: 1105 LSEFAAMIEVQNHN---FHNRIVTLIT---DL-----MASHDCDARFVEPEAKARVAALY 1153
L+ + ++ + + L +A D F KA +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 1154 L--------PYIALTMDMLPNLHSGNDVSRIINPTSEESVESGLNQSVAM-AIAGTSMFG 1204
+ P +L +L E+S+E+ M +I+ +
Sbjct: 306 IGVRCYEAYPNTSLPPSIL-----------------EDSLENNEGVPSPMLSISNLTQEQ 348
Query: 1205 ----IKTDNYKLFQQTRKVNLSMDNT-KNILIC 1232
+ N L ++V +S+ N KN+++
Sbjct: 349 VQDYVNKTNSHL-PAGKQVEISLVNGAKNLVVS 380
Score = 47.4 bits (112), Expect = 7e-05
Identities = 81/600 (13%), Positives = 165/600 (27%), Gaps = 226/600 (37%)
Query: 1089 ELSLEFKQQHYLVGLILSE-FAAMIEVQNHNFHNRIVTLITDLMASHDCDARFVEPEAKA 1147
E L + + L E F ++ T+ A+ D EP A
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEP------------TEGFAADD------EPTTPA 58
Query: 1148 RVAALYLPYIALTMD-------------MLPNLHS----GNDV-SRIINPTSEESVESGL 1189
+ +L Y++ ++ L + GND+ + E
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 1190 NQSV------AMAIAGTSMFGIKTDNYKLFQQTRKVNLSMDNTKNILICFLWILK----N 1239
+ + A +A K N LF+ + ++ F N
Sbjct: 119 TKELIKNYITARIMAKRPF--DKKSNSALFRAVG------EGNAQLVAIF-----GGQGN 165
Query: 1240 MDKDILKQWWAEMPVSRLNQLLQVLGLCVSCFE-YKGKTK--VKPVASVSQKFANKTVDM 1296
D ++ E L+ L ++ Y +K A + T+D
Sbjct: 166 TDD-----YFEE---------LRDL------YQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 1297 KSKLEDVILGQGSARSEMMQRRKDKNLGMDKLRWRKDQMIYKSTLDMSEKPKTKLERNLN 1356
+ G++ L W ++ S P
Sbjct: 206 EKVFTQ---------------------GLNILEWLENP---------SNTPD-------- 227
Query: 1357 LEGNLAT-EVSFTILNTLELIVQVVQQC--------------DHLHGLLGSVMKILL--- 1398
+ L + +S L + +Q+ +L G G ++
Sbjct: 228 -KDYLLSIPISCP-LIGV---IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 1399 -------HAFSCNQSTAVMQSMFS----TQRSLVFKFPNLLFDEETEQ------------ 1435
+F + A + +F + +PN +
Sbjct: 283 IAETDSWESFFVSVRKA-ITVLFFIGVRCYEA----YPNTSLPPSILEDSLENNEGVPSP 337
Query: 1436 ---CADLCL-QLLKH-SSSN----------LSLIRTNSA---------ASLYLLMRQ--- 1468
++L Q+ + + +N +SL+ N A SLY L
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV--NGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 1469 -NFEIGNNFARV---KMQVTMSLSSLVGTSQSFNETSLRRSLKTILLYSEQDRELEDTTF 1524
G + +R+ + ++ S L + F+ L + I +D + +F
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLP-VASPFHSHLLVPASDLIN----KDLVKNNVSF 450
Query: 1525 PEQVKDL---VFNLHMILSDTVKMKEFQE----DPEMLLDLMYRIAKGYQNSPNLRLTWL 1577
KD+ V+ DT + + E ++D + R+ ++ + + T +
Sbjct: 451 --NAKDIQIPVY-------DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Score = 47.0 bits (111), Expect = 7e-05
Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 48/162 (29%)
Query: 1733 GMKFG-DLNNEEFIYKEPTLTKLPEIFSRLENFYAERFGVNNIMIIKDSNPVDTMSL--D 1789
GM G DL YK + ++++R +N + + +G + + I+ + NPV+
Sbjct: 1630 GM--GMDL------YKTSKAAQ--DVWNRADNHFKDTYGFSILDIVIN-NPVNLTIHFGG 1678
Query: 1790 PDIAYIQITYVEPYFENYEKRYRETH--F-EQNFNIKTFMYATPFTTTGKAHGELHEQYK 1846
I+ Y FE +T F E N + ++ + + G L
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE-------KGLL----- 1726
Query: 1847 RKTILTTATHFPYVKTRIQVVDRKQIILTPIEVAI-EDIQKK 1887
+AT F T Q LT +E A ED++ K
Sbjct: 1727 ------SATQF----T--------QPALTLMEKAAFEDLKSK 1750
Score = 42.0 bits (98), Expect = 0.003
Identities = 104/619 (16%), Positives = 179/619 (28%), Gaps = 216/619 (34%)
Query: 16 FPHYFQITDVVDPIDYEDFILQQSLLIDRDPLKHLLEFPVDDIQVCVLPRKIRTVKPLLP 75
F Q+ + F + L + F DD
Sbjct: 27 FFIASQLQE--------QF--NKILPEPTE------GFAADD------------------ 52
Query: 76 KEPLSELE------PHVRECIECYTRNWIYVDYR------YRHFSTSSWFIDRT---TLA 120
EP + E +V +E + F +++ LA
Sbjct: 53 -EPTTPAELVGKFLGYVSSLVEPSKVG----QFDQVLNLCLTEFENC--YLEGNDIHALA 105
Query: 121 SNLPRQEFEVDMTPLPNGR-----------VSPQPSYKSQSSRDSRVSSSG--------- 160
+ L ++ + T L + ++ +P K +S R G
Sbjct: 106 AKLLQE----NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 161 --GDTPRGSWASFD-L--LNSVSDPLIVSLLERIPSETIDQLNEVTRQEGRQDVLFS--- 212
G+T + F+ L L L+ L++ + L+E+ R + +F+
Sbjct: 162 GQGNT--DDY--FEELRDLYQTYHVLVGDLIKFS----AETLSELIRTTLDAEKVFTQGL 213
Query: 213 -LYS--TYQDDEPVEK--RCIP-NLPCEPLGHRILIKCLQL--------KLELDVEPMFA 258
+ + P + IP + P LI +QL L + +
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCP--------LIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 259 TLALYDCRERKKVS----------ENFYFDMNSENNRHMLSP--HIPYVDCSTTSHACIL 306
L + V+ E+F+ + R ++ I C
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFF-----VSVRKAITVLFFIGV--------RC-- 310
Query: 307 NITHASPDLFLVIKLDKVLQGDI-NECAEP-YM---KDERNIEKVRQNAAQSCERLGKYR 361
A P+ L +L+ + N P M + E+V+ ++ L +
Sbjct: 311 --YEAYPNTSLP---PSILEDSLENNEGVPSPMLSISNL-TQEQVQDYVNKTNSHLPAGK 364
Query: 362 MPFAWTAVYLMNVINGVSN--IDGDCDSQSSNSLDRKSSGGAFDQLRKRASDSSTLTRRG 419
V + +++NG N + G SL G LRK + S R
Sbjct: 365 ------QVEI-SLVNGAKNLVVSG-----PPQSLY-----GLNLTLRKAKAPSGLDQSRI 407
Query: 420 SLERRSNSSDK-RVSWNLDDLDSFRPVTLTV-SSFFKQESDKLRDEDLYKF-----LQDL 472
R K + S F PV S SD + ++DL K +D+
Sbjct: 408 PFSER-----KLKFSN------RFLPVASPFHSHLLVPASDLI-NKDLVKNNVSFNAKDI 455
Query: 473 KKPC------SLLKKLK-SIPGCLKLDISPCPDEVKWCLTPELAEIVPRIGDKGRPIKEI 525
+ P S L+ L SI + I VKW T + I
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCI--IRLPVKWETTTQF------------KATHI 501
Query: 526 LEF-PLRETNLPHYLYRNL 543
L+F P + L +RN
Sbjct: 502 LDFGPGGASGLGVLTHRNK 520
Score = 39.3 bits (91), Expect = 0.016
Identities = 45/269 (16%), Positives = 79/269 (29%), Gaps = 94/269 (34%)
Query: 269 KKVSENFYFDMNSENN---RHMLSPHIPYVDCSTTSH-----ACILNIT-HASPDLFLVI 319
K++ EN Y M E + ++ +TS+ +L+ T P L L+
Sbjct: 1682 KRIREN-YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM- 1739
Query: 320 KLDKVLQGDINECAEPY--MKDERNIEKVRQNAAQSCERLGKYRMPFAWTAVYLMNVING 377
E A + +K + I A S LG+Y A L
Sbjct: 1740 -----------EKA-AFEDLKSKGLIPADATFAGHS---LGEY------AA--LA----- 1771
Query: 378 VSNIDGDCDSQSSNSLDRKSSGGAFDQLRKRASDSSTLTR-RGSLERRSNSSDKRVSWNL 436
S + RG + + D+ N
Sbjct: 1772 -------------------SLADVMS-----IESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 437 DDLDSFRPVTLTVSSFFKQESDKLRDEDLYK----FLQ------------------DLKK 474
+ + P V++ F QE+ + E + K ++ L
Sbjct: 1808 GMI-AINPGR--VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT 1864
Query: 475 PCSLLK--KLKSIPGCLKLDISPCPDEVK 501
++L KL+ I ++L S +EV+
Sbjct: 1865 VTNVLNFIKLQKID-IIELQKSLSLEEVE 1892
Score = 39.3 bits (91), Expect = 0.016
Identities = 44/224 (19%), Positives = 70/224 (31%), Gaps = 75/224 (33%)
Query: 1830 PFTTTGKAHGELHEQYKRKTILT-TATHFPYVKTRIQVVDR-KQIILTPIE-VAIEDIQK 1886
P T + HG L +L TA+ F Q+ ++ +I+ P E A +D
Sbjct: 8 PLTLS---HGSL-----EHVLLVPTASFFIA----SQLQEQFNKILPEPTEGFAADDEPT 55
Query: 1887 KTQEL--------SNSIRQEPPDP--KILQMVLQGCIGTTVNQGPMEMAVVFLSDLLDG- 1935
EL S+ + ++L + L F + L+G
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE----------------FENCYLEGN 99
Query: 1936 ----------EKSPTKLQNKLRL--CF--------KDFSKKCCDAL-----RKNKTLI-- 1968
+++ T L L + + F KK AL N L+
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 1969 ----GPDQKDYQKELERNYHRFTDKLMPLITFKHIDKLMPNARN 2008
G DY +EL Y + + LI F + L R
Sbjct: 160 FGGQGNTD-DYFEELRDLYQTYHVLVGDLIKF-SAETLSELIRT 201
Score = 37.0 bits (85), Expect = 0.081
Identities = 72/432 (16%), Positives = 126/432 (29%), Gaps = 150/432 (34%)
Query: 70 VKPLLPK--EPLSELEPHVRECIECYTR-----NWIY-------VDYRYRHFSTS--SW- 112
V L+ E LSEL + + +T+ W+ DY + S
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY----LLSIPISCP 239
Query: 113 FIDRTTLASNLPRQEFEV-----DMTPLPNGRVSPQPSYKSQSSRD---SRVSSSGGDTP 164
I LA + V TP G + + S+ + +
Sbjct: 240 LIGVIQLAH------YVVTAKLLGFTP---GELRSYLKGATGHSQGLVTAVAIAETD--- 287
Query: 165 RGSWASFDLLNSVSDPLIVSLL--------ERIPSETIDQLN---EVTRQEGRQDVLFSL 213
SW SF ++ +++L E P+ ++ + EG + S+
Sbjct: 288 --SWESF-FVSVRK---AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 214 YSTYQDDEPVEK---RCIPNLPCEP-----L--GHRILIKC---LQLK-LELDVEPMFAT 259
+ E V+ + +LP L G + L+ L L L + A
Sbjct: 342 SNL--TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 260 LALYDCR----ERK-KVSENFYFDMNSENNRHML---SP-HIPYVDCSTTSHACILNITH 310
L R ERK K S F L SP H + ++ I
Sbjct: 400 SGLDQSRIPFSERKLKFSNRF------------LPVASPFHSHLLVPAS---DLINK--- 441
Query: 311 ASPDLFLVIKLDKVLQGDINECAEP-Y-MKDERNIEKVRQNAAQS-CERLGKYRMPFAWT 367
DL + + + + P Y D ++ + + ++ + + R+P W
Sbjct: 442 ---DL-----VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI--IRLPVKWE 491
Query: 368 AVYLMNVINGVSNIDGDCDSQSSNSLDRKSSGGAFDQLRKRASDSSTLTRR--------- 418
++++ LD F AS LT R
Sbjct: 492 TT---------------TQFKATHILD-------FGPG--GASGLGVLTHRNKDGTGVRV 527
Query: 419 ---GSLERRSNS 427
G+L+ +
Sbjct: 528 IVAGTLDINPDD 539
Score = 35.8 bits (82), Expect = 0.19
Identities = 47/310 (15%), Positives = 86/310 (27%), Gaps = 120/310 (38%)
Query: 1307 QGSARSEM-MQRRK------------DK----NLGMD----------------------K 1327
QGS M M K D G +
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 1328 LRWRKDQMIYKSTLDMSEKPKTKLERNLNL----------EGNL-ATEVSFT---ILNTL 1373
+R MI+++ +D K + K+ + +N +G L AT+ FT + +
Sbjct: 1684 IRENYSAMIFETIVDGKLKTE-KIFKEINEHSTSYTFRSEKGLLSATQ--FTQPALT-LM 1739
Query: 1374 EL-IVQV------VQQCDHLHGL-LG---------SVMKI-----LLH--------AFSC 1403
E + + G LG VM I ++ A
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 1404 NQSTAVMQSMFSTQRSLVFKFPNLLFDEETEQCADLCLQLLKHSSSNLSLIRTNSAASLY 1463
++ M + V F +E Q + ++ K + +
Sbjct: 1800 DELGRSNYGMIAINPGRV----AASFSQEALQ--YVVERVGKRTGWLV------EIV--- 1844
Query: 1464 LLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQSFNETSLRRSLKTILLYSEQDRELEDTT 1523
N+ + N Q + G ++ + + L I L EL+ +
Sbjct: 1845 -----NYNVEN------QQYVAA-----GDLRALDT--VTNVLNFIKLQKIDIIELQKSL 1886
Query: 1524 FPEQVKDLVF 1533
E+V+ +F
Sbjct: 1887 SLEEVEGHLF 1896
Score = 35.8 bits (82), Expect = 0.21
Identities = 26/124 (20%), Positives = 36/124 (29%), Gaps = 34/124 (27%)
Query: 1549 QEDPEMLLDLMYRIAKGYQNSPNLRLTWLANMAQKHME-----------RNNHTEAGMCL 1597
QE M +DL Y+ S + W N A H + NN
Sbjct: 1627 QE-QGMGMDL-------YKTSKAAQDVW--NRADNHFKDTYGFSILDIVINNPVNL---T 1673
Query: 1598 VH-----SAALVAEYLHMIEEQPYLPLGAVSLEFISPNCLEECAVSDDVLSPEQEGVCLG 1652
+H + Y MI E G + E I E S ++G+
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETI--VDGKLKTEKIFKEINEH---STSYTFRSEKGLLSA 1728
Query: 1653 KDFT 1656
FT
Sbjct: 1729 TQFT 1732
Score = 34.6 bits (79), Expect = 0.41
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 31/92 (33%)
Query: 508 LAEIV---PRI------GDKGRPIKEILEFPLRETNLPHYLYRNLLFVYPKEINFTGRTG 558
+ +IV P G+KG+ I+E + ET + L +F KEIN
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF---KEIN------ 1711
Query: 559 SARNLTVKVQLMYGETPESAL-------PAIF 583
+ T + + + L PA+
Sbjct: 1712 --EHST---SYTF-RSEKGLLSATQFTQPALT 1737
Score = 31.6 bits (71), Expect = 3.4
Identities = 41/258 (15%), Positives = 81/258 (31%), Gaps = 81/258 (31%)
Query: 1749 PT-----LTKLPEIFSRLENFYAERFGVNNIMIIKDSNPVDTMSLDPDIA-YIQITYVEP 1802
PT ++L E F+++ E F D P L + ++ YV
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFA-------ADDEPTTPAEL---VGKFLG--YVSS 70
Query: 1803 YFENYE-KRYRE------THFEQNF----NIKTFMYATPFTTTGKAHGELHEQYKRKTIL 1851
E + ++ + T FE + +I K K ++
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT-------LVKTKELI 123
Query: 1852 TTATHFPYVKTRIQVVDRKQIILTPIEVAIEDIQKKTQELSNSIRQEPPDPKILQMVL-- 1909
Y+ RI + R P + L ++ + + ++ + +
Sbjct: 124 KN-----YITARI-MAKR------PFDKKSNSA------LFRAVGEG--NAQL--VAIFG 161
Query: 1910 -QGCIGTTVNQGPMEMAVVF------LSDLLDGEKSPTKLQNKLRL---CFKDFSKKCCD 1959
QG E+ ++ + DL+ + S L +R K F++ +
Sbjct: 162 GQGNTDDYFE----ELRDLYQTYHVLVGDLI--KFSAETLSELIRTTLDAEKVFTQG-LN 214
Query: 1960 ALR--KNKTLIGPDQKDY 1975
L +N + PD+ DY
Sbjct: 215 ILEWLENPSNT-PDK-DY 230
Score = 30.8 bits (69), Expect = 6.5
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 25/91 (27%)
Query: 1913 IGTTVNQGPMEMAVVFLSDLLDGEKSPTKLQNKLRLCFKDFSKKCCDALRKNKTLIGPDQ 1972
I V P+ + + F GEK +N + F+ D K + +
Sbjct: 1661 ILDIVINNPVNLTIHF-----GGEKGKRIRENYSAMIFET----IVDGKLKTEKIF---- 1707
Query: 1973 KDYQKELERNYHRFTDKLMPLITFKHIDKLM 2003
KE+ ++ TF+ L+
Sbjct: 1708 ----KEI--------NEHSTSYTFRSEKGLL 1726
Score = 30.8 bits (69), Expect = 7.1
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 43/122 (35%)
Query: 5 LVFQGLSNNF-----PFPH--YFQITDVVDPIDYEDFILQQSLLIDRDPLKHLLEFPVDD 57
L F SN F PF H + D LI++D +K+ + F D
Sbjct: 414 LKF---SNRFLPVASPF-HSHL--LVPASD-------------LINKDLVKNNVSFNAKD 454
Query: 58 IQVCVLP----RKIRTVKPLLPKEPLSELEPHVRECIECYTRNWIYVDYRYRHFSTSSWF 113
IQ+ V +R + + + +CI W ++
Sbjct: 455 IQIPVYDTFDGSDLRVLS--------GSISERIVDCIIRLPVKWETT-----TQFKATHI 501
Query: 114 ID 115
+D
Sbjct: 502 LD 503
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc,
PSI-biology, structural genomics; 1.91A {Legionella
pneumophila subsp}
Length = 297
Score = 35.5 bits (82), Expect = 0.14
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 1901 DPKILQMVLQGCIGTTVNQGPMEM---AVVFLSDLLDGEKSPTK 1941
P + ++ + + ++Q P M ++ L + + +P
Sbjct: 227 TPNTVSLIHKKLVNYVMDQQPFLMGYLSITQLVLMNRYQLNPVN 270
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target
11229F, transport protein, structural genomics; 2.02A
{Bacillus halodurans c-125}
Length = 305
Score = 35.1 bits (81), Expect = 0.23
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 1901 DPKILQMVLQGCIGTTVNQGPMEM---AVVFLSDLLDGEKSPTKLQNK 1945
D L +V +G I T+ QG M ++ +L L G P LQ +
Sbjct: 223 DKGTLDLVDEGIISATLAQGTWNMGYWSLTYLFHLHHGLTEPQILQTR 270
>3brs_A Periplasmic binding protein/LACI transcriptional; structural
genomics, protein structure initiative; 2.00A
{Clostridium phytofermentans}
Length = 289
Score = 34.2 bits (79), Expect = 0.34
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 1901 DPKILQMVLQGCIGTTVNQGPMEM---AVVFLSDLLDGEKSP 1939
+ +Q + +G V Q P + V LL E P
Sbjct: 226 SMEQIQYLEEGIFEAMVVQKPFNIGYLGVEKALKLLKKEYVP 267
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.36
Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 23/49 (46%)
Query: 479 LKKLKSIPGCLKLDISPCPDEVKWCLTPELAEIVPRIGDKGRPIKEILE 527
LKKL+ LKL D P LA IK +E
Sbjct: 22 LKKLQ---ASLKL---YADDS-----APALA------------IKATME 47
Score = 31.5 bits (70), Expect = 1.4
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 1936 EK-SPTKLQNKLRLCFKDFSKKCCDALRKNKTL 1967
EK + KLQ L+L ++ AL T+
Sbjct: 18 EKQALKKLQASLKL----YADDSAPALAIKATM 46
Score = 29.9 bits (66), Expect = 4.1
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 10/36 (27%)
Query: 1885 QKKT-QELSNSIRQEPPD--PKILQMVLQGCIGTTV 1917
+K+ ++L S++ D P + I T+
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL-------AIKATM 46
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic
component, PSI- 11023L, structural genomics, protein
structure initiative; HET: BDR; 1.90A {Hahella
chejuensis}
Length = 276
Score = 33.4 bits (77), Expect = 0.54
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 1901 DPKILQMVLQGCIGTTVNQGPMEM---AVVFLSDLLDGEKSP 1939
++ + G I V Q P M AV DL+ G+ P
Sbjct: 223 TEELEAAMYAGEISNLVVQNPEYMGYLAVQRALDLVRGKPIP 264
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding
protein, X-RAY crystallography, hinge bending,
conformational change; 1.7A {Escherichia coli} SCOP:
c.93.1.1 PDB: 1gub_A 1rpj_A*
Length = 288
Score = 32.3 bits (74), Expect = 1.3
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 1901 DPKILQMVLQGCIGTTVNQGPMEM---AVVFLSDLLDGEKSPTK 1941
P+ +MV G + TV Q P ++ + + D K
Sbjct: 229 IPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPL 272
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II,
11231J, structur genomics, protein structure initiative;
2.20A {Bacteroides fragilis}
Length = 304
Score = 32.4 bits (74), Expect = 1.4
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 1901 DPKILQMVLQGCIGTTVNQGPMEM---AVVFLSDLLDGEKSPTK 1941
+ + + +G + + Q P ++ L D L K
Sbjct: 234 LERNVTCLKEGTVSFLIAQQPELQGFNSIKTLCDHLIFRKEVAC 277
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 29,577,071
Number of extensions: 1761374
Number of successful extensions: 3345
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3291
Number of HSP's successfully gapped: 44
Length of query: 2010
Length of database: 6,701,793
Length adjustment: 108
Effective length of query: 1902
Effective length of database: 3,686,325
Effective search space: 7011390150
Effective search space used: 7011390150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.2 bits)