RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17025
         (2010 letters)



>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding
            protein LuxP {Vibrio harveyi [TaxId: 669]}
          Length = 338

 Score = 34.2 bits (77), Expect = 0.13
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 1901 DPKILQMVLQGCIGTTVNQGPMEM---AVVFLSDLLDGEKSPTKLQNKLRLCFKDFSKKC 1957
                L  + +G +  TV +   +        +   L+ +  PT       +  K  S + 
Sbjct: 266  GSAELDAIQKGDLDITVMRMNDDTGIAMAEAIKWDLEDKPVPTVYSGDFEIVTKADSPER 325

Query: 1958 CDALRK 1963
             +AL+K
Sbjct: 326  IEALKK 331


>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli
            [TaxId: 562]}
          Length = 288

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 1901 DPKILQMVLQGCIGTTVNQGPMEM---AVVFLSDLLDGEKSPTK 1941
             P+  +MV  G +  TV Q P ++    +  + D     K    
Sbjct: 229  IPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPL 272


>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli,
            strain k-12 [TaxId: 562]}
          Length = 271

 Score = 30.5 bits (67), Expect = 1.9
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 1901 DPKILQMVLQGCIGTTVNQGPMEM---AVVFLSDLLDGEKSPTK 1941
             P   + V  G +  T+ Q P ++    V     +L GEK   K
Sbjct: 217  TPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAK 260


>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
            (geranyltranstransferase) {Chicken (Gallus gallus)
            [TaxId: 9031]}
          Length = 348

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 1511 LYSEQDRELEDTTFPEQVKDLVFNLHMILSDTVKMKEFQEDPEMLLDLM-YRIAKGYQNS 1569
            +  E++RE     FP+ V+DL         D +   E  +    L +++ Y    G  N 
Sbjct: 3    VVVEREREEFVGFFPQIVRDL-------TEDGIGHPEVGDAVARLKEVLQYNAPGGKCNR 55

Query: 1570 PNLRLTWLANMAQKHMERNNHTEAGMCLVHSAALVAEYLH 1609
                    A   ++           +    +     E   
Sbjct: 56   G--LTVVAA--YRELSGPGQKDAESLRCALAVGWCIELFQ 91


>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
            phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId:
            9606]}
          Length = 357

 Score = 29.3 bits (65), Expect = 5.6
 Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 9/82 (10%)

Query: 1545 MKEFQEDPEMLLDLMYRIAKGYQNSPNLRLTW---------LANMAQKHMERNNHTEAGM 1595
            +  F+     L+  +  +  GY    N              +     +    +  +E  +
Sbjct: 49   ISRFKIPTVFLMSFLDALETGYGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCLSEIEL 108

Query: 1596 CLVHSAALVAEYLHMIEEQPYL 1617
              +  AA + +Y H      + 
Sbjct: 109  LAIIFAAAIHDYEHTGTTNSFH 130


>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId:
           562]}
          Length = 292

 Score = 28.8 bits (64), Expect = 6.9
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)

Query: 358 GKYRMPFAWTAVYLMNVINGVSNIDGDCDSQ 388
           GKY MP     V +MN+ING  + D + D Q
Sbjct: 2   GKYSMP-----VPMMNIINGGEHADNNVDIQ 27


>d2pi0a1 a.4.5.23 (A:5-110) Interferon regulatory factor 3, IRF-3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 106

 Score = 27.0 bits (60), Expect = 8.8
 Identities = 4/15 (26%), Positives = 9/15 (60%)

Query: 689 PGLKWVDNHKSIFNV 703
            G+ WV+  ++ F +
Sbjct: 18  EGVAWVNKSRTRFRI 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 7,270,168
Number of extensions: 346325
Number of successful extensions: 743
Number of sequences better than 10.0: 1
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 14
Length of query: 2010
Length of database: 2,407,596
Length adjustment: 99
Effective length of query: 1911
Effective length of database: 1,048,326
Effective search space: 2003350986
Effective search space used: 2003350986
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)