RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17026
(435 letters)
>gnl|CDD|223532 COG0456, RimI, Acetyltransferases [General function prediction
only].
Length = 177
Score = 78.1 bits (192), Expect = 6e-17
Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 14/177 (7%)
Query: 257 NGEEHKDGNVFTMTRPKIELGDVTPHNIKQLKRLNTVVFPVSYNEKFYKDVLEAGELAKL 316
+ R I D+ + L+ T + ++ ++++ L L
Sbjct: 1 KLSSEELSEDKVTIREAINK-DLLDVALAALEAR-TFDIRLPWSREYFEKDLTQAPELLL 58
Query: 317 AYYNDI--------VIGAVCCRI---DPNNGRKLYIMTLGCLSPYRRLGIGSMMLEHILN 365
V+G + R+ P+ + +I L YR GIG +L+ L
Sbjct: 59 VAETGGLDGLLDGKVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALE 118
Query: 366 YVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVETKQHYYKRIEPADAYVLQKTLR 422
+ + G D I L V+ +N+ AI Y+K GFE+V+ +++YY DA ++ K L
Sbjct: 119 RLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNYYADGN-GDALLMLKMLN 174
Score = 78.1 bits (192), Expect = 6e-17
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 108 DVTPHNIKQLKRLNTVVFPVSYNEKFYKDVLEAGELAKLAYYNDI--------VIGAVCC 159
D+ + L+ T + ++ ++++ L L V+G +
Sbjct: 21 DLLDVALAALEAR-TFDIRLPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLV 79
Query: 160 RI---DPNNGRKLYIMTLGCLSPYRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDV 216
R+ P+ + +I L YR GIG +L+ L + + G D I L V+ +N+
Sbjct: 80 RVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEA 139
Query: 217 AIDFYKKFGFEIVETKQHYYKRIEPADAYVLQKTLR 252
AI Y+K GFE+V+ +++YY DA ++ K L
Sbjct: 140 AIGLYRKLGFEVVKIRKNYYADGN-GDALLMLKMLN 174
>gnl|CDD|216007 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 80
Score = 75.0 bits (185), Expect = 6e-17
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 147 AYYNDIVIGAVCCRIDPNNGRKLYIMTLGCLSPYRRLGIGSMMLEHILNYVEKDGNFDSI 206
A + ++G I G I L YR GIG+ +LE + Y ++ I
Sbjct: 1 AEEDGELVGFASLSIIDEEGNVAEIEGLAVDPEYRGKGIGTALLEALEEYA-RELGLKRI 59
Query: 207 YLHVQLNNDVAIDFYKKFGFE 227
L V +N+ AI Y+K GF+
Sbjct: 60 ELEVLEDNEAAIALYEKLGFK 80
Score = 75.0 bits (185), Expect = 6e-17
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 317 AYYNDIVIGAVCCRIDPNNGRKLYIMTLGCLSPYRRLGIGSMMLEHILNYVEKDGNFDSI 376
A + ++G I G I L YR GIG+ +LE + Y ++ I
Sbjct: 1 AEEDGELVGFASLSIIDEEGNVAEIEGLAVDPEYRGKGIGTALLEALEEYA-RELGLKRI 59
Query: 377 YLHVQLNNDVAIDFYKKFGFE 397
L V +N+ AI Y+K GF+
Sbjct: 60 ELEVLEDNEAAIALYEKLGFK 80
>gnl|CDD|233477 TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase.
Members of this model belong to the GCN5-related
N-acetyltransferase (GNAT) superfamily. This model
covers prokarotes and the archaea. The seed contains a
characterized accession for Gram negative E. coli. An
untraceable characterized accession (PIR|S66013) for
Gram positive B. subtilis scores well (205.0) in the
full alignment. Characterized members are lacking in the
archaea. Noise cutoff (72.4) was set to exclude M. loti
paralog of rimI. Trusted cutoff (80.0) was set at next
highest scoring member in the mini-database [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 131
Score = 67.0 bits (164), Expect = 1e-13
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 124 VFPVSYNEK-FYKDVLEAGELAKLAYYNDIVIGAVCCRIDPNNGRKLYIMTLGCLSPYRR 182
F + E F +++ LA V+G +I + I+ + Y+
Sbjct: 12 AFAFPWTEAQFAEELANYHLCYLLARIGGKVVGYAGVQIVLDEAH---ILNIAVKPEYQG 68
Query: 183 LGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVETKQHYYKRIEP- 241
GIG +L +++ + G + I+L V+++N A YKK GF + +++YY +P
Sbjct: 69 QGIGRALLRELIDEAKGRG-VNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNYYP--DPG 125
Query: 242 ADAYVL 247
DA V+
Sbjct: 126 EDAIVM 131
Score = 67.0 bits (164), Expect = 1e-13
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 294 VFPVSYNEK-FYKDVLEAGELAKLAYYNDIVIGAVCCRIDPNNGRKLYIMTLGCLSPYRR 352
F + E F +++ LA V+G +I + I+ + Y+
Sbjct: 12 AFAFPWTEAQFAEELANYHLCYLLARIGGKVVGYAGVQIVLDEAH---ILNIAVKPEYQG 68
Query: 353 LGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVETKQHYYKRIEP- 411
GIG +L +++ + G + I+L V+++N A YKK GF + +++YY +P
Sbjct: 69 QGIGRALLRELIDEAKGRG-VNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNYYP--DPG 125
Query: 412 ADAYVL 417
DA V+
Sbjct: 126 EDAIVM 131
>gnl|CDD|173926 cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes
that characteristically catalyze the transfer of an acyl
group to a substrate. NAT (N-Acyltransferase) is a
large superfamily of enzymes that mostly catalyze the
transfer of an acyl group to a substrate and are
implicated in a variety of functions, ranging from
bacterial antibiotic resistance to circadian rhythms in
mammals. Members include GCN5-related
N-Acetyltransferases (GNAT) such as Aminoglycoside
N-acetyltransferases, Histone N-acetyltransferase (HAT)
enzymes, and Serotonin N-acetyltransferase, which
catalyze the transfer of an acetyl group to a substrate.
The kinetic mechanism of most GNATs involves the ordered
formation of a ternary complex: the reaction begins with
Acetyl Coenzyme A (AcCoA) binding, followed by binding
of substrate, then direct transfer of the acetyl group
from AcCoA to the substrate, followed by product and
subsequent CoA release. Other family members include
Arginine/ornithine N-succinyltransferase, Myristoyl-CoA:
protein N-myristoyltransferase, and
Acyl-homoserinelactone synthase which have a similar
catalytic mechanism but differ in types of acyl groups
transferred. Leucyl/phenylalanyl-tRNA-protein
transferase and FemXAB nonribosomal peptidyltransferases
which catalyze similar peptidyltransferase reactions are
also included.
Length = 65
Score = 53.0 bits (128), Expect = 2e-09
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 146 LAYYNDIVIGAVCCRIDPNNGRKLYIMTLGCLSPYRRLGIGSMMLEHILNYVEKDGNFDS 205
+A + ++G D + G YI L L YR GIGS +LE + G
Sbjct: 3 VAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERG-AKR 61
Query: 206 IYLH 209
+ L
Sbjct: 62 LRLE 65
Score = 53.0 bits (128), Expect = 2e-09
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 316 LAYYNDIVIGAVCCRIDPNNGRKLYIMTLGCLSPYRRLGIGSMMLEHILNYVEKDGNFDS 375
+A + ++G D + G YI L L YR GIGS +LE + G
Sbjct: 3 VAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERG-AKR 61
Query: 376 IYLH 379
+ L
Sbjct: 62 LRLE 65
>gnl|CDD|222309 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 118
Score = 47.7 bits (114), Expect = 7e-07
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 146 LAYYNDIVIGAVCCRIDPNNGRKLYIMTLGCLSPYRRLGIGSMMLEHILNYVEKDGNFDS 205
+A ++G +DP+ + L YR GIG +L+ I K
Sbjct: 49 VAERGGEIVGFAG--LDPDG----RLDLLYVRPRYRGRGIGRALLDAIEAEARKG--IKR 100
Query: 206 IYLHVQLNNDVAIDFYKKFGF 226
+ + +A FY + GF
Sbjct: 101 LTTEA---SLLARPFYLRLGF 118
Score = 47.7 bits (114), Expect = 7e-07
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 316 LAYYNDIVIGAVCCRIDPNNGRKLYIMTLGCLSPYRRLGIGSMMLEHILNYVEKDGNFDS 375
+A ++G +DP+ + L YR GIG +L+ I K
Sbjct: 49 VAERGGEIVGFAG--LDPDG----RLDLLYVRPRYRGRGIGRALLDAIEAEARKG--IKR 100
Query: 376 IYLHVQLNNDVAIDFYKKFGF 396
+ + +A FY + GF
Sbjct: 101 LTTEA---SLLARPFYLRLGF 118
>gnl|CDD|132624 TIGR03585, PseH, pseudaminic acid biosynthesis N-acetyl
transferase. Sequences in this family are members of
the pfam00583 (GNAT) superfamily of acetyltransferases
and are proposed to perform a N-acetylation step in the
process of pseudaminic acid biosynthesis in
Campylobacter species. This gene is commonly observed in
apparent operons with other genes responsible for the
biosynthesis of pseudaminic acid and as a component of
flagellar and exopolysaccharide biosynthesis loci.
Significantly, many genomes containing other components
of this pathway lack this gene, indicating that some
other N-acetyl transferases may be incolved and/or the
step is optional, resulting in a non-acetylated
pseudaminic acid variant sugar.
Length = 156
Score = 47.4 bits (113), Expect = 2e-06
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 160 RIDPNNGRKLYIMTLGCL-SPYRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAI 218
I+ + G +P+ + G+GS++ E L Y + + L V N+ A+
Sbjct: 70 DINLVHKS----AFWGIYANPFCKPGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKAL 125
Query: 219 DFYKKFGFEIVET-KQHYYKRIEPADAYVLQ 248
Y+KFGFE +Q +K E D ++
Sbjct: 126 KLYEKFGFEREGVFRQGIFKEGEYYDVLLMY 156
Score = 47.4 bits (113), Expect = 2e-06
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 330 RIDPNNGRKLYIMTLGCL-SPYRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAI 388
I+ + G +P+ + G+GS++ E L Y + + L V N+ A+
Sbjct: 70 DINLVHKS----AFWGIYANPFCKPGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKAL 125
Query: 389 DFYKKFGFEIVET-KQHYYKRIEPADAYVLQ 418
Y+KFGFE +Q +K E D ++
Sbjct: 126 KLYEKFGFEREGVFRQGIFKEGEYYDVLLMY 156
>gnl|CDD|222185 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 79
Score = 43.3 bits (103), Expect = 9e-06
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 146 LAYYNDIVIGAVCCRIDPNNGRKLYIMTLGCLSPYRRLGIGSMMLEHILNYVEKDGNFDS 205
+AY + ++G + R YI + YR G GS +L H+L + + F
Sbjct: 7 VAYDDGEIVGFLRLRPIGEGA---YIGGVAVDPEYRGQGYGSKLLRHLLEELGEKPLF-- 61
Query: 206 IYLHVQLNNDVAIDFYKKFGFEI 228
++ H Q A FY+K GFE
Sbjct: 62 LFAHPQ-----AKKFYEKLGFEP 79
Score = 43.3 bits (103), Expect = 9e-06
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 316 LAYYNDIVIGAVCCRIDPNNGRKLYIMTLGCLSPYRRLGIGSMMLEHILNYVEKDGNFDS 375
+AY + ++G + R YI + YR G GS +L H+L + + F
Sbjct: 7 VAYDDGEIVGFLRLRPIGEGA---YIGGVAVDPEYRGQGYGSKLLRHLLEELGEKPLF-- 61
Query: 376 IYLHVQLNNDVAIDFYKKFGFEI 398
++ H Q A FY+K GFE
Sbjct: 62 LFAHPQ-----AKKFYEKLGFEP 79
>gnl|CDD|222116 pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.
Length = 154
Score = 41.1 bits (97), Expect = 2e-04
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 179 PYRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIV-ETKQHYYK 237
G+G +L ++ Y K+ N ++I + NN AI F KK GFE V K K
Sbjct: 86 DNNDEGLGRKLLNALIEYAFKEQNIENILACIASNNISAIVFLKKLGFEKVGIEKNCGKK 145
Score = 41.1 bits (97), Expect = 2e-04
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 349 PYRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIV-ETKQHYYK 407
G+G +L ++ Y K+ N ++I + NN AI F KK GFE V K K
Sbjct: 86 DNNDEGLGRKLLNALIEYAFKEQNIENILACIASNNISAIVFLKKLGFEKVGIEKNCGKK 145
>gnl|CDD|181904 PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase;
Provisional.
Length = 146
Score = 40.7 bits (96), Expect = 3e-04
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 180 YRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVETKQHYY 236
Y+R G+G +LEH+++ +EK G +++L V+ +N AI Y+ GF V +++YY
Sbjct: 75 YQRQGLGRALLEHLIDELEKRGVA-TLWLEVRASNAAAIALYESLGFNEVTIRRNYY 130
Score = 40.7 bits (96), Expect = 3e-04
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 350 YRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVETKQHYY 406
Y+R G+G +LEH+++ +EK G +++L V+ +N AI Y+ GF V +++YY
Sbjct: 75 YQRQGLGRALLEHLIDELEKRGVA-TLWLEVRASNAAAIALYESLGFNEVTIRRNYY 130
>gnl|CDD|182263 PRK10140, PRK10140, putative acetyltransferase YhhY; Provisional.
Length = 162
Score = 40.7 bits (95), Expect = 3e-04
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 146 LAYYNDIVIGAVCCRIDPNNGRKLYIMTLG-CL-SPYRRLGIGSMMLEHILNYVEKDGNF 203
+A + V+G + + R+ ++ G C+ S ++ G+ S ++ ++ +
Sbjct: 55 VACIDGDVVGHLTIDVQ-QRPRRSHVADFGICVDSRWKNRGVASALMREMIEMCDNWLRV 113
Query: 204 DSIYLHVQLNNDVAIDFYKKFGFEIVETKQHYYKRI-EPADAYVLQKT 250
D I L V ++N AI YKK+GFEI T + Y R E DAY + +
Sbjct: 114 DRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMARV 161
Score = 40.7 bits (95), Expect = 3e-04
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 316 LAYYNDIVIGAVCCRIDPNNGRKLYIMTLG-CL-SPYRRLGIGSMMLEHILNYVEKDGNF 373
+A + V+G + + R+ ++ G C+ S ++ G+ S ++ ++ +
Sbjct: 55 VACIDGDVVGHLTIDVQ-QRPRRSHVADFGICVDSRWKNRGVASALMREMIEMCDNWLRV 113
Query: 374 DSIYLHVQLNNDVAIDFYKKFGFEIVETKQHYYKRI-EPADAYVLQKT 420
D I L V ++N AI YKK+GFEI T + Y R E DAY + +
Sbjct: 114 DRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMARV 161
>gnl|CDD|222199 pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 127
Score = 36.4 bits (85), Expect = 0.006
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 18/126 (14%)
Query: 114 IKQLKRLNTVVFPVS----YNEKFYKDVLEAGELAKLAYYNDIVIGAVCC---RIDPNNG 166
+ + L F V ++++ +LE G A+ + ++G + R++
Sbjct: 10 LDEFLELLEYAFQVEDSPAEIWEYFRPLLEEGR-VLGAFDDGKLVGQLALYPFRLNVPGK 68
Query: 167 RKL--YIMTLGCLSPYRRLGIGSMMLEHILNYVEKDGNFDSI-YLHVQLNNDVAIDFYKK 223
I + YR G+ +L L + + G + YL + Y++
Sbjct: 69 TYPAGGITGVATYPEYRGRGLMRKLLRRALAEMRERG--QPLSYLTP-----SSYPIYRR 121
Query: 224 FGFEIV 229
FG+EI
Sbjct: 122 FGYEIA 127
Score = 36.4 bits (85), Expect = 0.006
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 18/126 (14%)
Query: 284 IKQLKRLNTVVFPVS----YNEKFYKDVLEAGELAKLAYYNDIVIGAVCC---RIDPNNG 336
+ + L F V ++++ +LE G A+ + ++G + R++
Sbjct: 10 LDEFLELLEYAFQVEDSPAEIWEYFRPLLEEGR-VLGAFDDGKLVGQLALYPFRLNVPGK 68
Query: 337 RKL--YIMTLGCLSPYRRLGIGSMMLEHILNYVEKDGNFDSI-YLHVQLNNDVAIDFYKK 393
I + YR G+ +L L + + G + YL + Y++
Sbjct: 69 TYPAGGITGVATYPEYRGRGLMRKLLRRALAEMRERG--QPLSYLTP-----SSYPIYRR 121
Query: 394 FGFEIV 399
FG+EI
Sbjct: 122 FGYEIA 127
>gnl|CDD|117022 pfam08445, FR47, FR47-like protein. The members of this family are
similar to the C-terminal region of the D. melanogaster
hypothetical protein FR47. This protein has been found
to consist of two N-acyltransferase-like domains swapped
with the C-terminal strands.
Length = 86
Score = 32.3 bits (74), Expect = 0.072
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 180 YRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVET 231
+RR G+GS ++ + + + G + + V N + Y+K GF ++
Sbjct: 33 HRRRGLGSRLVAALARGIAERG--ITPFAVVVAGNTPSRRLYEKLGFRKIDE 82
Score = 32.3 bits (74), Expect = 0.072
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 350 YRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVET 401
+RR G+GS ++ + + + G + + V N + Y+K GF ++
Sbjct: 33 HRRRGLGSRLVAALARGIAERG--ITPFAVVVAGNTPSRRLYEKLGFRKIDE 82
>gnl|CDD|224584 COG1670, RimL, Acetyltransferases, including N-acetylases of
ribosomal proteins [Translation, ribosomal structure and
biogenesis].
Length = 187
Score = 34.2 bits (78), Expect = 0.082
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 180 YRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVET-KQHYYKR 238
Y G + L +L+Y ++ I V N+ +I Y+K GF + +QH + +
Sbjct: 107 YWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLEGELRQHEFIK 166
Query: 239 IEPADAYVLQKTLRN 253
D +
Sbjct: 167 GRWRDTVLYSLLRDE 181
Score = 34.2 bits (78), Expect = 0.082
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 350 YRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVET-KQHYYKR 408
Y G + L +L+Y ++ I V N+ +I Y+K GF + +QH + +
Sbjct: 107 YWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLEGELRQHEFIK 166
Query: 409 IEPADAYVLQKTLRN 423
D +
Sbjct: 167 GRWRDTVLYSLLRDE 181
>gnl|CDD|236715 PRK10562, PRK10562, putative acetyltransferase; Provisional.
Length = 145
Score = 33.5 bits (77), Expect = 0.084
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 179 PYRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVE 230
R GIG +++H+ + + L V N A++FY GF IV+
Sbjct: 79 KAVRRGIGKALMQHV------QQRYPHLSLEVYQKNQRAVNFYHAQGFRIVD 124
Score = 33.5 bits (77), Expect = 0.084
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 349 PYRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVE 400
R GIG +++H+ + + L V N A++FY GF IV+
Sbjct: 79 KAVRRGIGKALMQHV------QQRYPHLSLEVYQKNQRAVNFYHAQGFRIVD 124
>gnl|CDD|182510 PRK10514, PRK10514, putative acetyltransferase; Provisional.
Length = 145
Score = 33.1 bits (76), Expect = 0.10
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 18/55 (32%)
Query: 180 YRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDV------AIDFYKKFGFEI 228
R G+G M++EH L+ LH +L DV A+ FYKK GF++
Sbjct: 81 VRGCGVGRMLVEHALS------------LHPELTTDVNEQNEQAVGFYKKMGFKV 123
Score = 33.1 bits (76), Expect = 0.10
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 18/55 (32%)
Query: 350 YRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDV------AIDFYKKFGFEI 398
R G+G M++EH L+ LH +L DV A+ FYKK GF++
Sbjct: 81 VRGCGVGRMLVEHALS------------LHPELTTDVNEQNEQAVGFYKKMGFKV 123
>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. Alanine dehydrogenase catalyzes the
NAD-dependent reversible reductive amination of pyruvate
into alanine.
Length = 149
Score = 30.6 bits (70), Expect = 0.69
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 108 DVTPHNIKQLKRLNTVVFPVSYNEKFYKDVLEAGELAKLAYYNDIVIGAV 157
DV P ++QL+ L +F +A L + D+VIGAV
Sbjct: 50 DVRPARLRQLESL--------LGARFTTLYSQAELLEEAVKEADLVIGAV 91
Score = 30.6 bits (70), Expect = 0.69
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 278 DVTPHNIKQLKRLNTVVFPVSYNEKFYKDVLEAGELAKLAYYNDIVIGAV 327
DV P ++QL+ L +F +A L + D+VIGAV
Sbjct: 50 DVRPARLRQLESL--------LGARFTTLYSQAELLEEAVKEADLVIGAV 91
>gnl|CDD|225356 COG2764, PhnB, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 136
Score = 30.4 bits (69), Expect = 0.80
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 207 YLHVQLNNDVAIDFYKK-FGFEIVETKQHYYKRIEPADAYVLQKTLRNKVPNGEEHKDGN 265
YL N A+ FYK+ FG E E K+ + + + + ++ + E G+
Sbjct: 5 YLFFNGNAREALAFYKEVFGAE--ELKRVPFGDMPSSAG----EPPGGRIMHAELRIGGS 58
Query: 266 VFTM 269
+
Sbjct: 59 TIML 62
Score = 28.4 bits (64), Expect = 3.8
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 377 YLHVQLNNDVAIDFYKK-FGFEIVETKQHYYKRIEPADAYVLQKTL 421
YL N A+ FYK+ FG E E K+ + + + +
Sbjct: 5 YLFFNGNAREALAFYKEVFGAE--ELKRVPFGDMPSSAGEPPGGRI 48
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit
in neuron-specific adaptor protein (AP) complex AP-3.
AP complexes participate in the formation of
intracellular coated transport vesicles and select cargo
molecules for incorporation into the coated vesicles in
the late secretory and endocytic pathways. There are
four AP complexes, AP-1, AP-2, AP-3, and AP-4, described
in various eukaryotic organisms. Each AP complex
consists of four subunits: two large chains (one each of
gamma/alpha/delta/epsilon and beta1-4, respectively), a
medium mu chain (mu1-4), and a small sigma chain
(sigma1-4). Each of the four subunits from the different
AP complexes exhibits similarity with each other. This
subfamily corresponds to the C-terminal domain of
heterotetrameric adaptor protein complex 3 (AP-3) medium
mu3B subunit encoded by ap3m2 gene. Mu3B is specifically
expressed in neurons and neuroendocrine cells.
Neuron-specific AP-3 appears to be involved in synaptic
vesicle biogenesis from endosomes in neurons and plays
an important role in synaptic transmission in the
central nervous system. Unlike AP-1 and AP-2, which
function in conjunction with clathrin which is a
scaffolding protein participating in the formation of
coated vesicles, the nature of the outer shell of
neuron-specific AP-3 containing coats remains to be
elucidated. Membrane-anchored cargo molecules interact
with adaptors through short sorting signals in their
cytosolic segments. Tyrosine-based endocytotic signals
are one of the most important sorting signals. They are
of the form Y-X-X-Phi, where Y is tyrosine, X is any
amino acid and Phi is a bulky hydrophobic residue that
can be Leu, Ile, Met, Phe, or Val. These kinds of
sorting signals can be recognized by the C-terminal
domain of AP-3 mu3B subunit, also known as Y-X-X-Phi
signal-binding domain that contains two hydrophobic
pockets, one for the tyrosine-binding and one for the
bulky hydrophobic residue-binding.
Length = 254
Score = 31.2 bits (70), Expect = 0.84
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 191 EHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKK 223
E IL+++ DGNF + HV N VAI Y K
Sbjct: 81 ERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVK 113
Score = 31.2 bits (70), Expect = 0.84
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 361 EHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKK 393
E IL+++ DGNF + HV N VAI Y K
Sbjct: 81 ERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVK 113
>gnl|CDD|132489 TIGR03448, mycothiol_MshD, mycothiol synthase. Members of this
family are MshD, the acetyltransferase that catalyzes
the final step of mycothiol biosynthesis in various
members of the Actinomyctes, Mycothiol replaces
glutathione in these species [Biosynthesis of cofactors,
prosthetic groups, and carriers, Glutathione and
analogs].
Length = 292
Score = 30.8 bits (70), Expect = 1.2
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 174 LGCLSPYRRLGIGSMM----LEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIV 229
+G + G+G + L H+ ++ L+V+ +N+ A+ Y+K GF +
Sbjct: 232 VGVDPAAQGRGLGDALTLIGLHHLAARGLP-----AVMLYVEADNEAAVRTYEKLGFTVA 286
Query: 230 ETKQHY 235
E Y
Sbjct: 287 EVDVAY 292
Score = 30.8 bits (70), Expect = 1.2
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 344 LGCLSPYRRLGIGSMM----LEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIV 399
+G + G+G + L H+ ++ L+V+ +N+ A+ Y+K GF +
Sbjct: 232 VGVDPAAQGRGLGDALTLIGLHHLAARGLP-----AVMLYVEADNEAAVRTYEKLGFTVA 286
Query: 400 ETKQHY 405
E Y
Sbjct: 287 EVDVAY 292
>gnl|CDD|224167 COG1246, ArgA, N-acetylglutamate synthase and related
acetyltransferases [Amino acid transport and
metabolism].
Length = 153
Score = 30.0 bits (68), Expect = 1.3
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 153 VIGAVCCRIDPNNGRKLYIM-TLGCLSPYRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQ 211
VIG C + P L + +L YR G G +LE +L + G +++
Sbjct: 51 VIG--CAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELG-IKELFV--- 104
Query: 212 LNNDVAIDFYKKFGFEIVE 230
L + +F+ + GF V+
Sbjct: 105 LTTR-SPEFFAERGFTRVD 122
Score = 30.0 bits (68), Expect = 1.3
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 323 VIGAVCCRIDPNNGRKLYIM-TLGCLSPYRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQ 381
VIG C + P L + +L YR G G +LE +L + G +++
Sbjct: 51 VIG--CAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELG-IKELFV--- 104
Query: 382 LNNDVAIDFYKKFGFEIVE 400
L + +F+ + GF V+
Sbjct: 105 LTTR-SPEFFAERGFTRVD 122
>gnl|CDD|176699 cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of
the antitumor agent chartreusin (cha); and similar
proteins. ChaP is an enzyme involved in the
biosynthesis of the potent antitumor agent chartreusin
(cha). Cha is an aromatic polyketide glycoside produced
by Streptomyces chartreusis. ChaP may play a role as a
meta-cleavage dioxygenase in the oxidative rearrangement
of the anthracyclic polyketide. ChaP belongs to a
conserved domain superfamily that is found in a variety
of structurally related metalloproteins, including the
bleomycin resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases.
Length = 123
Score = 29.6 bits (67), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 207 YLHVQLNNDVAIDFYKKFGFEIVETKQHY 235
+ V+L+N V++DF + EI QHY
Sbjct: 37 FAVVKLDNGVSLDFA-QPDGEIPP--QHY 62
Score = 29.6 bits (67), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 377 YLHVQLNNDVAIDFYKKFGFEIVETKQHY 405
+ V+L+N V++DF + EI QHY
Sbjct: 37 FAVVKLDNGVSLDFA-QPDGEIPP--QHY 62
>gnl|CDD|182119 PRK09861, PRK09861, cytoplasmic membrane lipoprotein-28;
Provisional.
Length = 272
Score = 30.0 bits (67), Expect = 2.0
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 263 DGNVFTMTRPKIELGDVTPHNIKQLKRLNTVVFPVSYNEKFYKDVLEAGELAKLAYYND 321
D NVF RP +E D H K + NT VFP++ K K V + E A +A ND
Sbjct: 83 DANVF-QHRPFLE-QDNQAHGYKLVAVGNTFVFPMAGYSKKIKTVAQIKEGATVAIPND 139
>gnl|CDD|131883 TIGR02836, spore_IV_A, stage IV sporulation protein A. A
comparative genome analysis of all sequenced genomes of
shows a number of proteins conserved strictly among the
endospore-forming subset of the Firmicutes. This
protein, a member of this panel, is designated stage IV
sporulation protein A. It acts in the mother cell
compartment and plays a role in spore coat morphogenesis
[Cellular processes, Sporulation and germination].
Length = 492
Score = 30.1 bits (68), Expect = 2.4
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 24/110 (21%)
Query: 42 AGELAKKYDRENVILTFVLQREMVDFVSVRQEVGLQFPLR--------WKNSITRN---- 89
EL +KYD V+ V D +SV +EV +FP+ W + N
Sbjct: 201 RQELEEKYDVP-VLAMDVESMRESDILSVLEEVLYEFPILEINIDLPSWVEVLDENHWLK 259
Query: 90 ENVLFGMTKYDRPKIELGDVTPHNIKQLKRLNTVVFPVSYNEKFYKDVLE 139
EN T ++ +L+ ++ VV + NE L
Sbjct: 260 ENF-----------QSSVKETVKDVYRLRDVDNVVGQLKENEFIESVGLA 298
>gnl|CDD|223530 COG0454, WecD, Histone acetyltransferase HPA2 and related
acetyltransferases [Transcription / General function
prediction only].
Length = 156
Score = 29.4 bits (63), Expect = 2.5
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 180 YRRLGIGSMMLEHILNYVEKDGNFDSIYL------HVQLNNDVAIDFYKKFGFEIVE 230
YR GIGS +LE L + K G + + N A+ FY+K GF+
Sbjct: 93 YRGKGIGSALLEAALEWARKRGISLNRLALEVYEKNGFGGNGAAVRFYEKLGFKEAR 149
Score = 29.4 bits (63), Expect = 2.5
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 350 YRRLGIGSMMLEHILNYVEKDGNFDSIYL------HVQLNNDVAIDFYKKFGFEIVE 400
YR GIGS +LE L + K G + + N A+ FY+K GF+
Sbjct: 93 YRGKGIGSALLEAALEWARKRGISLNRLALEVYEKNGFGGNGAAVRFYEKLGFKEAR 149
>gnl|CDD|173133 PRK14670, uvrC, excinuclease ABC subunit C; Provisional.
Length = 574
Score = 29.9 bits (67), Expect = 3.1
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 197 VEKDGNFD-SIYLHVQLNNDVAIDFYKKFGFEIVETKQHYYKRIEPADAYVLQKTLRN 253
VEKD NFD SIY +L +Y IV K H +K+I+ + L L+N
Sbjct: 250 VEKDINFDESIYEEDELILQFITQYYTSINM-IVPDKIHIFKKIDTKNITKLINELKN 306
Score = 29.9 bits (67), Expect = 3.1
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 367 VEKDGNFD-SIYLHVQLNNDVAIDFYKKFGFEIVETKQHYYKRIEPADAYVLQKTLRN 423
VEKD NFD SIY +L +Y IV K H +K+I+ + L L+N
Sbjct: 250 VEKDINFDESIYEEDELILQFITQYYTSINM-IVPDKIHIFKKIDTKNITKLINELKN 306
>gnl|CDD|222034 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 136
Score = 28.4 bits (64), Expect = 3.6
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 153 VIGAVCCRIDPNNGRKLYIMTLG-CLSP-YRRLGIGSMMLEHILNYVEKDGNFDSIYLHV 210
IG + I + +G L P Y G + +L+Y ++ D I +
Sbjct: 66 FIGTIGLHIPDDEA------EIGYWLGPEYWGKGYATEAARALLDYAFEELGLDRIVARI 119
Query: 211 QLNNDVAIDFYKKFGFE 227
N + +K GF+
Sbjct: 120 DPENIASQRVLEKLGFK 136
Score = 28.4 bits (64), Expect = 3.6
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 323 VIGAVCCRIDPNNGRKLYIMTLG-CLSP-YRRLGIGSMMLEHILNYVEKDGNFDSIYLHV 380
IG + I + +G L P Y G + +L+Y ++ D I +
Sbjct: 66 FIGTIGLHIPDDEA------EIGYWLGPEYWGKGYATEAARALLDYAFEELGLDRIVARI 119
Query: 381 QLNNDVAIDFYKKFGFE 397
N + +K GF+
Sbjct: 120 DPENIASQRVLEKLGFK 136
>gnl|CDD|179740 PRK04101, PRK04101, fosfomycin resistance protein FosB;
Provisional.
Length = 139
Score = 28.0 bits (63), Expect = 4.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 116 QLKRLNTVVFPVSYNEK---FYKDVLEAGELAK---LAYYN 150
LK +N + F VS EK FY+ VL A L K AY++
Sbjct: 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGRKTAYFD 41
Score = 28.0 bits (63), Expect = 4.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 286 QLKRLNTVVFPVSYNEK---FYKDVLEAGELAK---LAYYN 320
LK +N + F VS EK FY+ VL A L K AY++
Sbjct: 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGRKTAYFD 41
>gnl|CDD|236088 PRK07757, PRK07757, acetyltransferase; Provisional.
Length = 152
Score = 28.2 bits (64), Expect = 4.7
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 24/93 (25%)
Query: 146 LAYYNDIVIGAVCCRIDPNNGRKLYIMT--------LGCLSPYRRLGIGSMMLEHILNYV 197
+A ++G CC L+I+ L YR GIG M++E L
Sbjct: 45 VAEEEGEIVG--CC--------ALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEA 94
Query: 198 EKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVE 230
+ G L Q +F++K GF V+
Sbjct: 95 RELGVKRVFALTYQ------PEFFEKLGFREVD 121
Score = 28.2 bits (64), Expect = 4.7
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 24/93 (25%)
Query: 316 LAYYNDIVIGAVCCRIDPNNGRKLYIMT--------LGCLSPYRRLGIGSMMLEHILNYV 367
+A ++G CC L+I+ L YR GIG M++E L
Sbjct: 45 VAEEEGEIVG--CC--------ALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEA 94
Query: 368 EKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVE 400
+ G L Q +F++K GF V+
Sbjct: 95 RELGVKRVFALTYQ------PEFFEKLGFREVD 121
>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain.
This model describes a conserved domain found in surface
proteins of a number of Firmutes. Many members have
LPXTG C-terminal anchoring motifs and a substantial
number have the KxYKxGKxW putative sorting signal at the
N-terminus. The tetracycline resistance plasmid pCF10 in
Enterococcus faecalis promotes conjugal plasmid transfer
in response to sex pheromones, but PgrA/Sec10 encoded by
that plasmid, a member of this family, specifically
inhibits the ability of cells to receive homologous
plasmids. The phenomenon is called surface exclusion.
Length = 356
Score = 28.9 bits (65), Expect = 5.9
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 113 NIKQLKRLNTVVFPVSYNEKFYKDVLEAGELAKLAYYNDIV 153
L +NT+ P YN K++ E+G+
Sbjct: 18 KANALAGVNTITLPAGYNIDALKNIYESGDFDNSDAAKAEA 58
Score = 28.9 bits (65), Expect = 5.9
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 283 NIKQLKRLNTVVFPVSYNEKFYKDVLEAGELAKLAYYNDIV 323
L +NT+ P YN K++ E+G+
Sbjct: 18 KANALAGVNTITLPAGYNIDALKNIYESGDFDNSDAAKAEA 58
>gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed.
Length = 970
Score = 29.0 bits (65), Expect = 6.0
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 125 FPVSYNEKFYKDVLEAGELAKLAYYNDIVIGAVCCRIDPNNGRKLYIMTLGCLSPY-RRL 183
FPV +++ + + + +A+ D++I A + + +
Sbjct: 803 FPVKLDDQELRRLGDTDAIAEKI--ADLLIEAFQVKFSSMVAEFTEAIGEAVDAQGICND 860
Query: 184 GIGSMMLEHI 193
+ S+M+ HI
Sbjct: 861 ILRSVMIMHI 870
Score = 29.0 bits (65), Expect = 6.0
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 295 FPVSYNEKFYKDVLEAGELAKLAYYNDIVIGAVCCRIDPNNGRKLYIMTLGCLSPY-RRL 353
FPV +++ + + + +A+ D++I A + + +
Sbjct: 803 FPVKLDDQELRRLGDTDAIAEKI--ADLLIEAFQVKFSSMVAEFTEAIGEAVDAQGICND 860
Query: 354 GIGSMMLEHI 363
+ S+M+ HI
Sbjct: 861 ILRSVMIMHI 870
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 29.1 bits (66), Expect = 6.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 203 FDSIYLHV----QLNNDVAIDFYKKFGFEIVE 230
F S+ L V +L +VA F +KFG I+E
Sbjct: 897 FASLRLVVAGAEKLKPEVADAFEEKFGIRILE 928
Score = 29.1 bits (66), Expect = 6.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 373 FDSIYLHV----QLNNDVAIDFYKKFGFEIVE 400
F S+ L V +L +VA F +KFG I+E
Sbjct: 897 FASLRLVVAGAEKLKPEVADAFEEKFGIRILE 928
>gnl|CDD|188595 TIGR04080, rSAM_pep_cyc, KxxxW cyclic peptide radical SAM maturase.
Members of this family are radical SAM enzymes that
appear to perform a cyclization on an adjacent cognate
peptide from family TIGR04079. Genomes with the complete
system include Streptococcus thermophilus LMD-9 and
Lactococcus lactis subsp. cremoris MG1363, among others.
The gene symbol assigned is kwcM, for KxxxW Cyclic
peptide Maturase [Protein fate, Protein modification and
repair].
Length = 440
Score = 28.8 bits (64), Expect = 6.7
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 23/116 (19%)
Query: 191 EHILNYVEKDG-------NFDSIYLHVQLNNDVAIDFY--KKFGFEIVETKQHYYKRIEP 241
+ L +EK G NFD I +L+ AI K+ GFEI + +
Sbjct: 6 DDFLFRLEKFGGILINKNNFDRI----ELDESEAIFLSLVKEHGFEIAFN---EFIKEFK 58
Query: 242 ADAYVLQKTLRNKVPNGEEHKDGNVFTMTRPKIELGDVTPHNIKQLKRLNTVVFPV 297
AD L+K L K+ ++DG + E+ + +I +LK+ N + FP+
Sbjct: 59 ADK--LEKILLEKI-----YRDGEIEEKGINPDEIINKAQKHIAELKKHNIISFPL 107
>gnl|CDD|235142 PRK03624, PRK03624, putative acetyltransferase; Provisional.
Length = 140
Score = 27.6 bits (62), Expect = 7.4
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 180 YRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVET 231
+R GIG ++ + + G I L V+ +ND + FY+ G+E +
Sbjct: 80 FRGRGIGRALVARLEKKLIARG-CPKINLQVREDNDAVLGFYEALGYEEQDR 130
Score = 27.6 bits (62), Expect = 7.4
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 350 YRRLGIGSMMLEHILNYVEKDGNFDSIYLHVQLNNDVAIDFYKKFGFEIVET 401
+R GIG ++ + + G I L V+ +ND + FY+ G+E +
Sbjct: 80 FRGRGIGRALVARLEKKLIARG-CPKINLQVREDNDAVLGFYEALGYEEQDR 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.141 0.415
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,186,172
Number of extensions: 2352852
Number of successful extensions: 2005
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1986
Number of HSP's successfully gapped: 92
Length of query: 435
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 335
Effective length of database: 6,502,202
Effective search space: 2178237670
Effective search space used: 2178237670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)