BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17028
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 216 SHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVSR 275
S P+ G LK+++ I K W+ RYF L L Y +ED + P + +
Sbjct: 6 SGPIKMGWLKKQR---SIVKNWQQRYFVLRAQQLYYYKDEEDTK--PQGCMYLPGCTIKE 60
Query: 276 GARNIPKA----FEIF--------TGDDSLILKPKNGKNAEQWVQCLSVVVA 315
A N +A FEI G DS +L + E+WV+ L V
Sbjct: 61 IATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG 112
>pdb|1U5G|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|B Chain B, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|C Chain C, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|D Chain D, Crystal Structure Of The Ph Domain Of Skap-Hom
Length = 122
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 237 WRTRYFTLSGAHLSYKGSKEDKQ---ETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSL 293
W+ R+ LS Y GS +DKQ E ID + +R R FEI D +
Sbjct: 37 WQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRI 96
Query: 294 I-LKPKNGKNAEQWVQCLSVVV 314
+ K+AE+WVQ L ++
Sbjct: 97 YQFTAASPKDAEEWVQQLKFIL 118
>pdb|1U5F|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom With 8
Vector-Derived N-Terminal Residues
Length = 148
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 237 WRTRYFTLSGAHLSYKGSKEDKQ---ETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSL 293
W+ R+ LS Y GS +DKQ E ID + +R R FEI D +
Sbjct: 37 WQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRI 96
Query: 294 I-LKPKNGKNAEQWVQCLSVVVAHSQAKEMP 323
+ K+AE+WVQ L ++ + +P
Sbjct: 97 YQFTAASPKDAEEWVQQLKFILQDLGSDVIP 127
>pdb|1U5E|A Chain A, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|1U5E|B Chain B, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|2OTX|A Chain A, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|2OTX|B Chain B, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
Length = 211
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 237 WRTRYFTLSGAHLSYKGSKEDKQ---ETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSL 293
W+ R+ LS Y GS +DKQ E ID + +R R FEI D +
Sbjct: 126 WQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRI 185
Query: 294 I-LKPKNGKNAEQWVQCLSVVV 314
+ K+AE+WVQ L ++
Sbjct: 186 YQFTAASPKDAEEWVQQLKFIL 207
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 5/125 (4%)
Query: 192 GGKEASWGCFLCN-HPERAVGFLQDSHPVIEGQLKEKKGRWKIFKR--WRTRYFTLSGAH 248
GG SW C E + F + +G L G R W+ R+F L +
Sbjct: 31 GGLMNSWKRRWCVLKDETFLWFRSKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSK 90
Query: 249 LSYKGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQ 308
L Y + D +E +RS K N +I D + L ++ ++A QW
Sbjct: 91 LMY--FENDSEEKLKGTVEVRSAKEIIDNTNKENGIDIIMADRTFHLIAESPEDASQWFS 148
Query: 309 CLSVV 313
LS V
Sbjct: 149 VLSQV 153
>pdb|2UZS|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain
Of Akt1 In Cancer (Akt1-Ph_e17k)
Length = 125
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 213 LQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTL--SGAHLSYKGSKE--DKQETPIDVHRI 268
+ D V EG L K+G K K WR RYF L G + YK + D++E P++ +
Sbjct: 3 MSDVAIVKEGWL-HKRG--KYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSV 59
Query: 269 RSVKVSRGARNIPKAFEI 286
++ + R P F I
Sbjct: 60 AQCQLMKTERPRPNTFII 77
>pdb|2UZR|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain
Of Akt1 In Cancer (Akt1-Ph_e17k)
Length = 124
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 213 LQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTL--SGAHLSYKGSKE--DKQETPIDVHRI 268
+ D V EG L K+G K K WR RYF L G + YK + D++E P++ +
Sbjct: 2 MSDVAIVKEGWL-HKRG--KYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSV 58
Query: 269 RSVKVSRGARNIPKAFEI 286
++ + R P F I
Sbjct: 59 AQCQLMKTERPRPNTFII 76
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 233 IFKRWRTRYFTLSGAHLSYKGSKEDKQETPI----DVHRIRSVKVSRGARNIPKAFEIFT 288
+ K W+ RYF L + Y S+ +K+ + +VH+++ K S FEI T
Sbjct: 26 VMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMR-DNLFEIVT 84
Query: 289 GDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMPTRGSS 328
+ ++ + + W++ +S + A+ P R +S
Sbjct: 85 TSRTFYVQADSPEEMHSWIKAVSGAIV---AQRGPGRSAS 121
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 219 VIEGQLKEKKGRWKIFKRWRTRYFTL--SGAHLSYKGSKE--DKQETPIDVHRIRSVKVS 274
V EG L K+G + K WR RYF L G + YK + D++E P++ + ++
Sbjct: 10 VKEGWL-HKRGEY--IKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLM 66
Query: 275 RGARNIPKAFEI----FTGDDSLILKPKNGKNAEQWVQCLSVV---VAHSQAKEMPTRGS 327
+ R P F I +T + + E+W + V + + +EM R
Sbjct: 67 KTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQEEEEMDFRSG 126
Query: 328 S 328
S
Sbjct: 127 S 127
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 219 VIEGQLKEKKGRWKIFKRWRTRYFTL--SGAHLSYKGSKE--DKQETPIDVHRIRSVKVS 274
V EG L K+G + K WR RYF L G + YK + D++E P++ + ++
Sbjct: 7 VKEGWL-HKRGEY--IKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLM 63
Query: 275 RGARNIPKAFEI----FTGDDSLILKPKNGKNAEQWVQCLSVV---VAHSQAKEMPTRGS 327
+ R P F I +T + + E+W + V + A EM R
Sbjct: 64 KTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQAAAEMDFRSG 123
Query: 328 S 328
S
Sbjct: 124 S 124
>pdb|1FAO|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1PHISH IN COMPLEX WITH INOSITOL 1,3,4,5-
Tetrakisphosphate
pdb|1FB8|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1/phish
Length = 126
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 221 EGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPI---DVHRIRSVKVSRGA 277
EG L ++ G + K W+TR+FTL L Y K+ PI D+ +V+
Sbjct: 21 EGYLTKQGG---LVKTWKTRWFTLHRNELKY--FKDQMSPEPIRILDLTECSAVQFDYSQ 75
Query: 278 RNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMPTRGSSLVR 331
+ F + + L K G A++W++ L + SQ ++ +G +R
Sbjct: 76 ERV-NCFCLVFPFRTFYLCAKTGVEADEWIKILRWKL--SQIRKQLNQGEGTIR 126
>pdb|1WI1|A Chain A, Solution Structure Of The Ph Domain Of Human Calcium-
Dependent Activator Protein For Secretion (Caps)
Length = 126
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 233 IFKRWRTRYFTL------SGAHLSYKGSKEDKQE-TPIDVHRIRSVKVSRGARNIPKAFE 285
++KRW+ R+F L + A SY+ K + QE +D + + G F
Sbjct: 21 VWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFN 80
Query: 286 IFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMPTR 325
D++I + ++ WVQ + S PT+
Sbjct: 81 AVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQ 120
>pdb|3GIU|A Chain A, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
pdb|3GIU|B Chain B, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
Length = 215
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 192 GGKEASWGCFLCNHPERAVGFLQDSH 217
G S G F+CNH +G+LQD H
Sbjct: 133 GALSNSAGTFVCNHTLYHLGYLQDKH 158
>pdb|1UNP|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of Pkb
Alpha
Length = 121
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 213 LQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTL--SGAHLSYKGSKE--DKQETPIDVHRI 268
+ D V EG L K+G + K WR RYF L G + YK + D++E P++ +
Sbjct: 1 MSDVAIVKEGWL-HKRGEY--IKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSV 57
Query: 269 RSVKVSRGARNIPKAFEI 286
++ + R P F I
Sbjct: 58 AQCQLMKTERPRPNTFII 75
>pdb|1UNR|A Chain A, Crystal Structure Of The Ph Domain Of Pkb Alpha In Complex
With A Sulfate Molecule
pdb|1UNQ|A Chain A, High Resolution Crystal Structure Of The Pleckstrin
Homology Domain Of Protein Kinase BAKT BOUND TO INS
(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 213 LQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTL--SGAHLSYKGSKE--DKQETPIDVHRI 268
+ D V EG L K+G + K WR RYF L G + YK + D++E P++ +
Sbjct: 3 MSDVAIVKEGWL-HKRGEY--IKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSV 59
Query: 269 RSVKVSRGARNIPKAFEI 286
++ + R P F I
Sbjct: 60 AQCQLMKTERPRPNTFII 77
>pdb|2UVM|A Chain A, Structure Of Pkbalpha Ph Domain In Complex With A Novel
Inositol Headgroup Surrogate, Benzene 1,2,3,4-
Tetrakisphosphate
Length = 123
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 213 LQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTL--SGAHLSYKGSKE--DKQETPIDVHRI 268
+ D V EG L K+G + K WR RYF L G + YK + D++E P++ +
Sbjct: 1 MSDVAIVKEGWL-HKRGEY--IKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSV 57
Query: 269 RSVKVSRGARNIPKAFEI 286
++ + R P F I
Sbjct: 58 AQCQLMKTERPRPNTFII 75
>pdb|1P6S|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Protein Kinase B Beta (PkbAKT)
Length = 111
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 221 EGQLKEKKGRWKIFKRWRTRYFTLS--GAHLSYKGSKEDKQET--PIDVHRIRSVKVSRG 276
EG L K+G + K WR RYF L G+ + YK E +T P++ + ++ +
Sbjct: 9 EGWL-HKRGEY--IKTWRPRYFLLKSDGSFIGYKERPEAPDQTLPPLNNFSVAECQLMKT 65
Query: 277 ARNIPKAFEI 286
R P F I
Sbjct: 66 ERPRPNTFVI 75
>pdb|1H10|A Chain A, High Resolution Structure Of The Pleckstrin Homology
Domain Of Protein Kinase BAKT BOUND TO
Ins(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 219 VIEGQLKEKKGRWKIFKRWRTRYFTL--SGAHLSYKGSKE--DKQETPIDVHRIRSVKVS 274
V EG L K+G + K WR RYF L G + YK + D++E P++ + ++
Sbjct: 9 VKEGWL-HKRGEY--IKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLX 65
Query: 275 RGARNIPKAFEI 286
+ R P F I
Sbjct: 66 KTERPRPNTFII 77
>pdb|2X18|A Chain A, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|B Chain B, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|C Chain C, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|D Chain D, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|E Chain E, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|F Chain F, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|G Chain G, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|H Chain H, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
Length = 119
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 213 LQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTL--SGAHLSYKGSKEDKQ-ETPIDVHRIR 269
+ D V EG + +K+G + K WR RYF L G+ + YK +D P++ +
Sbjct: 2 MSDVTIVKEGWV-QKRGEY--IKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVA 58
Query: 270 SVKVSRGARNIPKAFEI----FTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKE 321
++ + R P F I +T + E+W + + V Q +E
Sbjct: 59 KCQLMKTERPKPNTFIIRCLQWTTVIERTFHVDTPEEREEWTEAIQAVADRLQRQE 114
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 221 EGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVSRGA-RN 279
EG L + G K R R+ L L Y ++D + + + + KVSR
Sbjct: 247 EGTLXKVTG-----KNRRPRHLFLXNDVLLYTYPQKDGKYRLKNTLAVANXKVSRPVXEK 301
Query: 280 IPKAFEIFTGDDSLILKPKNGKNAEQWVQCLS 311
+P A +I T + L L + ++W CLS
Sbjct: 302 VPYALKIETSESCLXLSASSCAERDEWYGCLS 333
>pdb|3ECQ|A Chain A, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
pdb|3ECQ|B Chain B, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
Length = 1531
Score = 28.5 bits (62), Expect = 5.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 120 YPVLCTDKMLAEVWQCSRNRYNHTSTYWS 148
Y + TDK+ A VW S+N Y S W+
Sbjct: 463 YGFVSTDKLAAGVWSNSQNSYGGGSNDWT 491
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,125,192
Number of Sequences: 62578
Number of extensions: 405771
Number of successful extensions: 780
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 22
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)