Query psy17028
Match_columns 334
No_of_seqs 214 out of 1049
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 20:00:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3723|consensus 100.0 2.9E-57 6.4E-62 454.1 11.9 306 12-322 230-844 (851)
2 cd01264 PH_melted Melted pleck 99.9 2.7E-26 6E-31 188.9 10.7 96 219-314 1-101 (101)
3 cd01233 Unc104 Unc-104 pleckst 99.9 1.8E-22 3.9E-27 164.7 11.4 94 218-315 2-99 (100)
4 cd01251 PH_centaurin_alpha Cen 99.9 2.9E-22 6.3E-27 164.7 11.3 95 220-316 1-102 (103)
5 cd01236 PH_outspread Outspread 99.9 1.3E-21 2.8E-26 162.0 10.6 93 220-312 1-102 (104)
6 cd01260 PH_CNK Connector enhan 99.9 1.9E-21 4.2E-26 156.2 10.7 92 220-313 2-96 (96)
7 cd01238 PH_Tec Tec pleckstrin 99.9 2.2E-21 4.7E-26 160.2 11.2 95 219-313 1-106 (106)
8 cd01235 PH_SETbf Set binding f 99.9 7.1E-21 1.5E-25 153.2 11.7 92 220-314 1-101 (101)
9 cd01265 PH_PARIS-1 PARIS-1 ple 99.8 8.9E-21 1.9E-25 153.6 10.4 89 221-313 2-93 (95)
10 cd01266 PH_Gab Gab (Grb2-assoc 99.8 2E-20 4.3E-25 154.5 10.8 94 220-313 1-107 (108)
11 cd01257 PH_IRS Insulin recepto 99.8 4.9E-20 1.1E-24 151.8 11.4 88 217-312 1-100 (101)
12 cd01247 PH_GPBP Goodpasture an 99.8 8.5E-20 1.8E-24 147.2 10.8 86 220-312 1-90 (91)
13 cd01252 PH_cytohesin Cytohesin 99.8 1.2E-19 2.6E-24 153.2 11.7 99 219-322 1-121 (125)
14 cd01244 PH_RasGAP_CG9209 RAS_G 99.8 1.1E-19 2.4E-24 148.9 10.9 86 228-313 12-98 (98)
15 cd01250 PH_centaurin Centaurin 99.8 1.1E-18 2.4E-23 137.4 10.3 90 220-312 1-93 (94)
16 cd01246 PH_oxysterol_bp Oxyste 99.8 2.4E-18 5.1E-23 134.7 11.0 87 220-313 1-91 (91)
17 cd01241 PH_Akt Akt pleckstrin 99.8 4.3E-18 9.3E-23 139.6 11.0 92 218-314 1-102 (102)
18 cd01245 PH_RasGAP_CG5898 RAS G 99.7 7.6E-18 1.6E-22 138.1 9.3 88 221-312 2-97 (98)
19 PF00169 PH: PH domain; Inter 99.7 8.4E-17 1.8E-21 125.8 13.1 94 218-314 1-103 (104)
20 KOG0930|consensus 99.7 2.1E-16 4.5E-21 149.8 9.1 115 204-322 244-383 (395)
21 cd01263 PH_anillin Anillin Ple 99.6 5.3E-16 1.1E-20 131.9 8.6 94 219-313 2-122 (122)
22 cd01254 PH_PLD Phospholipase D 99.6 1.7E-15 3.8E-20 128.0 10.2 94 220-313 1-121 (121)
23 cd01253 PH_beta_spectrin Beta- 99.6 2.5E-15 5.5E-20 122.3 10.4 91 221-312 2-103 (104)
24 cd01219 PH_FGD FGD (faciogenit 99.6 7.2E-15 1.6E-19 120.3 10.8 93 218-315 2-100 (101)
25 PF15409 PH_8: Pleckstrin homo 99.6 2.6E-14 5.7E-19 115.3 10.1 85 222-313 1-88 (89)
26 cd01230 PH_EFA6 EFA6 Pleckstri 99.6 3.7E-14 8E-19 119.8 11.4 96 220-316 2-113 (117)
27 smart00233 PH Pleckstrin homol 99.5 1E-13 2.2E-18 106.1 12.4 94 218-314 1-101 (102)
28 PF15413 PH_11: Pleckstrin hom 99.5 6.7E-14 1.5E-18 116.8 9.7 92 220-313 1-112 (112)
29 cd01220 PH_CDEP Chondrocyte-de 99.5 5.5E-13 1.2E-17 109.4 11.6 93 218-315 2-98 (99)
30 cd00821 PH Pleckstrin homology 99.4 6.1E-13 1.3E-17 100.9 9.8 91 220-313 1-96 (96)
31 cd00900 PH-like Pleckstrin hom 99.4 4.1E-12 8.9E-17 97.0 11.1 92 221-313 2-99 (99)
32 cd01237 Unc112 Unc-112 pleckst 99.4 3E-12 6.5E-17 106.3 9.7 80 234-314 17-103 (106)
33 PF14593 PH_3: PH domain; PDB: 99.3 1.4E-11 3E-16 102.3 11.4 95 212-317 6-102 (104)
34 PF15410 PH_9: Pleckstrin homo 99.3 1.9E-11 4E-16 103.0 11.3 94 220-314 2-118 (119)
35 cd01256 PH_dynamin Dynamin ple 99.2 1.7E-10 3.6E-15 94.7 10.3 94 218-313 1-104 (110)
36 KOG1090|consensus 99.2 1.1E-11 2.3E-16 132.4 2.5 95 217-314 1633-1731(1732)
37 KOG0690|consensus 99.1 3.9E-11 8.4E-16 117.2 5.6 101 215-321 12-123 (516)
38 cd01239 PH_PKD Protein kinase 99.1 1.9E-10 4.2E-15 96.6 8.6 92 219-313 1-117 (117)
39 cd01218 PH_phafin2 Phafin2 Pl 99.0 2.2E-09 4.8E-14 89.1 10.9 94 218-317 4-101 (104)
40 cd01234 PH_CADPS CADPS (Ca2+-d 99.0 4.9E-10 1.1E-14 92.7 6.6 96 219-318 3-114 (117)
41 KOG2059|consensus 99.0 4.8E-10 1E-14 117.0 6.4 102 217-319 564-669 (800)
42 cd01242 PH_ROK Rok (Rho- assoc 98.9 2.9E-08 6.3E-13 83.0 11.2 95 220-314 2-110 (112)
43 cd01262 PH_PDK1 3-Phosphoinosi 98.8 4.4E-08 9.6E-13 79.1 8.9 86 218-314 1-88 (89)
44 cd01243 PH_MRCK MRCK (myotonic 98.7 1.6E-07 3.4E-12 79.7 11.6 93 219-313 3-118 (122)
45 cd01249 PH_oligophrenin Oligop 98.7 4.1E-08 8.8E-13 81.5 7.8 88 220-311 1-102 (104)
46 KOG0521|consensus 98.7 1.1E-08 2.3E-13 110.2 4.0 100 217-319 273-373 (785)
47 cd01259 PH_Apbb1ip Apbb1ip (Am 98.6 1.3E-07 2.9E-12 79.3 8.2 92 220-314 2-108 (114)
48 cd01261 PH_SOS Son of Sevenles 98.6 4.3E-07 9.3E-12 76.4 9.9 96 217-316 3-111 (112)
49 KOG3640|consensus 98.5 2E-07 4.4E-12 100.0 7.3 99 217-317 989-1109(1116)
50 PTZ00267 NIMA-related protein 98.4 5.7E-07 1.2E-11 91.2 8.1 95 217-315 376-477 (478)
51 cd01240 PH_beta-ARK Beta adren 98.4 3.7E-07 8E-12 76.2 4.6 100 217-318 2-102 (116)
52 cd01258 PH_syntrophin Syntroph 98.3 2.8E-06 6E-11 71.2 8.4 91 222-312 3-107 (108)
53 KOG0248|consensus 98.3 5.3E-07 1.2E-11 94.4 4.1 114 210-330 240-357 (936)
54 cd01222 PH_clg Clg (common-sit 98.1 5.1E-05 1.1E-09 62.3 10.4 89 216-314 2-95 (97)
55 KOG3751|consensus 98.0 1.4E-05 3E-10 82.0 7.5 99 212-314 310-424 (622)
56 PF12814 Mcp5_PH: Meiotic cell 98.0 9.4E-05 2E-09 62.8 10.7 81 235-315 28-122 (123)
57 PLN02866 phospholipase D 97.9 0.0001 2.2E-09 81.3 11.5 101 216-316 180-309 (1068)
58 PLN00188 enhanced disease resi 97.7 0.00018 3.8E-09 76.8 10.1 101 217-317 3-112 (719)
59 cd01226 PH_exo84 Exocyst compl 97.7 0.00039 8.4E-09 57.6 9.8 76 238-314 20-98 (100)
60 PTZ00283 serine/threonine prot 97.7 0.00011 2.5E-09 75.2 7.8 96 216-315 371-490 (496)
61 KOG0932|consensus 97.4 8.6E-05 1.9E-09 76.9 3.4 99 217-315 505-618 (774)
62 cd01224 PH_Collybistin Collybi 97.4 0.0018 3.9E-08 54.4 10.6 90 219-312 3-105 (109)
63 KOG1117|consensus 97.3 0.00018 4E-09 77.4 3.4 93 217-316 86-179 (1186)
64 KOG1739|consensus 97.2 0.00035 7.6E-09 71.4 4.9 91 218-315 24-117 (611)
65 KOG3723|consensus 97.2 0.00059 1.3E-08 71.1 6.2 125 13-137 194-341 (851)
66 cd01225 PH_Cool_Pix Cool (clon 97.1 0.0024 5.1E-08 53.8 7.9 76 237-313 28-108 (111)
67 cd01248 PH_PLC Phospholipase C 97.1 0.0031 6.8E-08 52.5 8.2 74 238-312 22-114 (115)
68 KOG0705|consensus 97.1 0.00039 8.4E-09 72.4 3.2 46 283-328 447-494 (749)
69 cd01232 PH_TRIO Trio pleckstri 97.0 0.0095 2.1E-07 50.4 10.8 52 261-315 57-113 (114)
70 KOG4424|consensus 96.9 0.0015 3.2E-08 68.1 5.8 100 212-316 265-371 (623)
71 PF15406 PH_6: Pleckstrin homo 96.9 0.0022 4.7E-08 53.9 5.7 65 242-311 44-110 (112)
72 cd01221 PH_ephexin Ephexin Ple 96.9 0.0037 8E-08 53.7 7.3 74 237-311 27-119 (125)
73 KOG3543|consensus 96.5 0.00069 1.5E-08 71.2 0.2 100 214-317 460-568 (1218)
74 KOG1451|consensus 96.5 0.0043 9.4E-08 64.9 5.8 138 163-313 220-366 (812)
75 cd01228 PH_BCR-related BCR (br 96.5 0.0087 1.9E-07 49.2 6.4 80 218-313 3-93 (96)
76 PF15408 PH_7: Pleckstrin homo 96.4 0.0012 2.5E-08 53.5 0.9 88 221-313 1-96 (104)
77 KOG1117|consensus 96.2 0.014 3.1E-07 63.4 7.8 78 236-313 517-600 (1186)
78 cd01223 PH_Vav Vav pleckstrin 96.2 0.033 7.2E-07 47.3 8.5 97 217-316 3-113 (116)
79 KOG3531|consensus 96.1 0.0018 3.9E-08 69.9 0.5 93 219-314 925-1019(1036)
80 KOG4236|consensus 96.1 0.0049 1.1E-07 64.5 3.5 95 217-315 412-524 (888)
81 cd01231 PH_Lnk LNK-family Plec 95.6 0.036 7.9E-07 46.1 6.2 78 235-312 19-106 (107)
82 KOG0248|consensus 95.5 0.0074 1.6E-07 64.2 2.4 88 219-313 260-347 (936)
83 cd01227 PH_Dbs Dbs (DBL's big 95.4 0.13 2.8E-06 44.7 9.2 38 279-316 78-117 (133)
84 PF15404 PH_4: Pleckstrin homo 95.1 0.13 2.8E-06 47.1 8.8 47 220-269 1-59 (185)
85 KOG0592|consensus 94.2 0.069 1.5E-06 56.0 5.3 86 217-313 450-536 (604)
86 KOG1737|consensus 92.9 0.064 1.4E-06 58.5 2.6 86 219-313 78-167 (799)
87 KOG4807|consensus 92.8 0.0016 3.4E-08 65.3 -9.0 78 235-314 33-114 (593)
88 KOG1738|consensus 89.9 0.047 1E-06 57.7 -2.2 70 217-287 561-631 (638)
89 cd01255 PH_TIAM TIAM Pleckstri 89.7 2.4 5.1E-05 37.6 8.5 39 281-319 113-159 (160)
90 KOG1170|consensus 89.5 0.021 4.6E-07 61.8 -5.2 90 219-313 3-93 (1099)
91 PF08458 PH_2: Plant pleckstri 88.7 1.1 2.4E-05 37.9 5.6 39 280-318 69-107 (110)
92 PF15411 PH_10: Pleckstrin hom 88.4 4.5 9.7E-05 34.3 9.1 88 216-310 5-116 (116)
93 KOG1264|consensus 88.2 0.66 1.4E-05 50.9 4.8 64 259-322 852-918 (1267)
94 KOG4047|consensus 87.8 0.41 9E-06 49.0 2.9 97 217-314 7-117 (429)
95 cd05134 RasGAP_RASA3 RASA3 (or 87.3 0.27 5.9E-06 48.4 1.3 33 214-246 276-310 (310)
96 cd05394 RasGAP_RASA2 RASA2 (or 86.9 0.23 5.1E-06 48.9 0.6 32 215-246 280-313 (313)
97 cd05128 RasGAP_GAP1_like The G 86.3 0.16 3.4E-06 50.0 -1.0 32 214-245 282-315 (315)
98 KOG3531|consensus 85.4 0.83 1.8E-05 50.2 3.8 97 217-320 749-850 (1036)
99 KOG3551|consensus 84.5 0.96 2.1E-05 45.9 3.5 92 217-311 291-398 (506)
100 KOG4424|consensus 83.3 1.3 2.8E-05 46.9 4.0 88 235-324 511-604 (623)
101 cd00020 ARM Armadillo/beta-cat 82.9 15 0.00032 28.7 9.3 83 19-101 8-103 (120)
102 PF01602 Adaptin_N: Adaptin N 82.3 5.5 0.00012 40.3 8.1 104 12-120 145-258 (526)
103 KOG3549|consensus 82.1 4.7 0.0001 40.6 7.2 132 163-316 243-388 (505)
104 PF15405 PH_5: Pleckstrin homo 79.6 2.8 6E-05 36.3 4.2 32 282-313 100-134 (135)
105 PF01602 Adaptin_N: Adaptin N 77.5 8.6 0.00019 39.0 7.7 111 14-126 263-377 (526)
106 PF14470 bPH_3: Bacterial PH d 77.3 31 0.00068 26.7 9.5 74 236-311 20-95 (96)
107 KOG3551|consensus 76.7 2.8 6.1E-05 42.7 3.8 56 260-315 215-272 (506)
108 PTZ00429 beta-adaptin; Provisi 74.1 20 0.00044 39.5 9.8 102 21-123 301-438 (746)
109 PF15277 Sec3-PIP2_bind: Exocy 72.1 20 0.00043 29.0 7.1 77 236-314 2-88 (91)
110 PF10274 ParcG: Parkin co-regu 71.8 4.4 9.6E-05 37.1 3.5 53 11-63 69-130 (183)
111 PF06017 Myosin_TH1: Myosin ta 71.0 52 0.0011 29.9 10.4 91 217-317 49-146 (199)
112 KOG2070|consensus 70.5 5.9 0.00013 41.5 4.5 92 216-312 308-404 (661)
113 cd05395 RasGAP_RASA4 Ras GTPas 69.8 1.4 3.1E-05 43.8 -0.1 29 217-245 300-331 (337)
114 KOG4407|consensus 68.2 0.32 6.8E-06 55.5 -5.5 97 217-314 922-1041(1973)
115 PF12717 Cnd1: non-SMC mitotic 63.9 40 0.00087 29.8 8.0 56 14-69 21-80 (178)
116 KOG0517|consensus 62.8 0.41 8.9E-06 56.2 -6.0 98 218-315 2299-2410(2473)
117 cd05135 RasGAP_RASAL Ras GTPas 62.8 3 6.6E-05 41.4 0.7 32 214-245 299-333 (333)
118 KOG1059|consensus 60.2 35 0.00076 37.6 8.0 72 13-84 176-251 (877)
119 KOG1242|consensus 53.4 17 0.00037 38.7 4.3 102 15-118 330-436 (569)
120 KOG3520|consensus 48.8 31 0.00068 39.6 5.6 57 261-321 668-728 (1167)
121 PF14844 PH_BEACH: PH domain a 48.2 47 0.001 26.8 5.3 52 257-309 52-104 (106)
122 KOG3727|consensus 47.5 4.5 9.8E-05 42.9 -1.0 80 234-314 372-458 (664)
123 PF13646 HEAT_2: HEAT repeats; 46.9 55 0.0012 24.5 5.3 70 20-100 1-73 (88)
124 PF12456 hSac2: Inositol phosp 43.8 1.8E+02 0.0039 24.3 8.3 62 213-274 25-90 (115)
125 KOG3523|consensus 43.1 26 0.00056 37.7 3.7 76 236-311 498-591 (695)
126 KOG1077|consensus 43.0 1.4E+02 0.0031 33.1 9.2 114 3-122 318-437 (938)
127 KOG2434|consensus 42.1 53 0.0011 34.7 5.7 99 28-137 86-184 (500)
128 KOG1060|consensus 41.6 1.3E+02 0.0028 33.8 8.6 84 19-102 323-442 (968)
129 PF06115 DUF956: Domain of unk 39.5 1.2E+02 0.0026 26.1 6.5 61 244-305 28-92 (118)
130 PTZ00429 beta-adaptin; Provisi 39.1 1.7E+02 0.0037 32.5 9.3 96 19-117 180-281 (746)
131 PF14784 ECIST_Cterm: C-termin 38.5 1.2E+02 0.0025 26.3 6.4 31 282-312 76-111 (126)
132 PF10508 Proteasom_PSMB: Prote 37.5 2.7E+02 0.0059 29.0 10.2 101 17-118 118-231 (503)
133 cd00864 PI3Ka Phosphoinositide 35.2 38 0.00082 29.8 3.0 36 13-48 100-136 (152)
134 PF04714 BCL_N: BCL7, N-termin 34.7 17 0.00036 26.8 0.5 19 234-252 27-46 (52)
135 KOG1729|consensus 34.6 20 0.00043 35.1 1.3 97 218-320 46-146 (288)
136 cd00688 ISOPREN_C2_like This g 34.2 89 0.0019 28.0 5.4 69 32-100 142-221 (300)
137 KOG1264|consensus 33.6 40 0.00086 37.8 3.4 35 217-254 474-508 (1267)
138 PF00613 PI3Ka: Phosphoinositi 33.0 49 0.0011 30.0 3.4 41 13-54 106-147 (184)
139 PF07560 DUF1539: Domain of Un 32.2 1.1E+02 0.0023 26.6 5.2 58 59-117 59-116 (126)
140 PF06685 DUF1186: Protein of u 31.3 64 0.0014 30.9 4.1 111 18-132 73-194 (249)
141 KOG0169|consensus 31.0 30 0.00065 38.0 2.0 81 238-318 33-126 (746)
142 PF12717 Cnd1: non-SMC mitotic 27.9 2E+02 0.0044 25.3 6.5 69 21-100 66-140 (178)
143 PF14676 FANCI_S2: FANCI solen 27.5 1.3E+02 0.0028 26.7 5.1 65 13-79 54-119 (158)
144 PF02831 gpW: gpW; InterPro: 27.2 1.2E+02 0.0025 23.5 4.1 40 284-323 24-63 (68)
145 KOG2171|consensus 26.2 1.8E+02 0.0039 33.6 6.9 116 19-135 119-252 (1075)
146 cd00020 ARM Armadillo/beta-cat 26.2 2E+02 0.0042 22.1 5.5 34 15-48 45-81 (120)
147 KOG2274|consensus 25.9 1.4E+02 0.0029 34.0 5.8 79 9-100 605-697 (1005)
148 PF07524 Bromo_TP: Bromodomain 25.8 2E+02 0.0043 21.9 5.3 66 14-80 6-72 (77)
149 COG4687 Uncharacterized protei 25.2 2E+02 0.0043 24.7 5.4 28 281-308 66-94 (122)
150 PF10882 bPH_5: Bacterial PH d 25.1 1.9E+02 0.0042 22.7 5.3 28 281-311 70-97 (100)
151 PF04147 Nop14: Nop14-like fam 25.0 1.5E+02 0.0033 33.1 6.2 118 4-121 453-606 (840)
152 KOG2137|consensus 24.4 2.6E+02 0.0056 30.8 7.5 112 9-121 304-421 (700)
153 PF12830 Nipped-B_C: Sister ch 24.2 64 0.0014 29.0 2.6 83 53-135 8-91 (187)
154 COG5173 SEC6 Exocyst complex s 23.9 2.4E+02 0.0052 30.6 7.0 47 79-125 643-689 (742)
155 PLN02204 diacylglycerol kinase 23.9 4.2E+02 0.0091 28.8 8.9 26 292-317 130-155 (601)
156 KOG0689|consensus 23.6 79 0.0017 32.9 3.4 36 280-315 322-361 (448)
157 smart00145 PI3Ka Phosphoinosit 23.4 70 0.0015 29.1 2.7 36 13-48 105-141 (184)
158 PF09384 UTP15_C: UTP15 C term 23.1 2.1E+02 0.0046 24.9 5.6 30 14-43 74-106 (148)
159 smart00576 BTP Bromodomain tra 22.7 2.5E+02 0.0053 21.6 5.3 65 14-79 6-71 (77)
160 PF13249 Prenyltrans_2: Prenyl 21.9 1.2E+02 0.0027 23.7 3.6 69 29-97 22-104 (113)
161 PF08253 Leader_Erm: Erm Leade 21.9 38 0.00082 19.9 0.4 7 3-9 12-18 (19)
162 PF07678 A2M_comp: A-macroglob 21.5 1.8E+02 0.004 27.0 5.2 39 60-100 126-164 (246)
163 KOG4095|consensus 20.8 40 0.00086 30.2 0.5 19 234-252 28-47 (165)
164 PF12460 MMS19_C: RNAPII trans 20.5 4E+02 0.0087 26.8 7.8 88 9-96 29-142 (415)
165 KOG2137|consensus 20.4 2.2E+02 0.0048 31.3 6.1 113 12-126 383-500 (700)
166 TIGR00074 hypC_hupF hydrogenas 20.3 57 0.0012 25.7 1.2 25 77-101 48-72 (76)
No 1
>KOG3723|consensus
Probab=100.00 E-value=2.9e-57 Score=454.12 Aligned_cols=306 Identities=38% Similarity=0.697 Sum_probs=264.9
Q ss_pred hHHHHHhhHHHHHhhccCchhhHHHHHHHHHHhhcCCchhhhchHHHHHhhhcCchhHHHHHHHHHhhccCChhhHHHHH
Q psy17028 12 GYKLLEASLPQLCEYLATNSTILATMQIFLHLAEKRPQLLVDYVPKLKQANEGNANTLCVTVQVVAAVGRLNKDKAQDAL 91 (334)
Q Consensus 12 ~~~~l~~~vp~L~~~L~~~~~~~~~l~il~~ia~~~p~~l~~~l~~~k~~~~~~p~~~~~~aki~gavG~~~~~~a~~~L 91 (334)
-+|+|+.|||+|++.|.|+++++.+++|+.+||.+.|.++.+|+.+++++++++|++.+++|+|+.++|++|+++||.||
T Consensus 230 ~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~l~~~~E~l~e~~~~~p~~~~~~a~i~T~~g~~d~e~a~~~l 309 (851)
T KOG3723|consen 230 QLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPVALNSFLEMLKEIGERFPYLTGQMARIYTAVGHVDEERARSCL 309 (851)
T ss_pred cHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCccchhhHHHHHHHHHHhCCCccHHHHHHHHHhcccchhhhcchH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcchhhhHHHHH-HHHhhccCCCcccccccceeecccc---------------------------------
Q psy17028 92 NFILAHLPKADRSSQSVLLRE-ATLLCSTYPVLCTDKMLAEVWQCSR--------------------------------- 137 (334)
Q Consensus 92 ~~l~~~L~~~d~~~~~~Ll~E-i~~l~~~~p~ll~~~~~~~~r~~~~--------------------------------- 137 (334)
+||++|+++++|+++|+|+.| |-+..+.+-+.++++ .|+.||+|+
T Consensus 310 ~~l~~q~a~~~~s~~~~l~~eriLA~~~~~Ns~l~~q-~Di~~~~n~~S~i~SlNS~~~~n~~~~~Gr~~i~t~i~~p~~ 388 (851)
T KOG3723|consen 310 TYLVSQLANMEHSFHHILLLERILAITDTFNSILGPQ-RDIFRMSNSFSAIASLNSRQLENTKAGSGRRKISTEIEFPEK 388 (851)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhCccccccchh-hHHHhhhhhHHHHHHhhccCcCCccCCCCcceeeecCCCCcc
Confidence 999999999999999999887 777888888888764 678887765
Q ss_pred -------------------ccc-------ccccc---------------------------c------------------
Q psy17028 138 -------------------NRY-------NHTST---------------------------Y------------------ 146 (334)
Q Consensus 138 -------------------~r~-------~~~~~---------------------------~------------------ 146 (334)
+|. -|++- .
T Consensus 389 l~e~~li~nT~~~~h~~~~~R~~~~~SR~~~ASntH~s~~r~hgpyS~g~~ske~~~iSn~~~nrsNv~la~~t~~ttkg 468 (851)
T KOG3723|consen 389 LEETKLIVNTENEDHEKLQVRIQAFESRINAASNTHGSIRRYHGPYSLGQVSKEERKISNIRFNRSNVSLAFHTMLTTKG 468 (851)
T ss_pred hhhcccccCCCChHHHHHHhhhhhhhcccCccccccccccccccCcccccccHHHHhhcccccccccceEEeeccCcccc
Confidence 111 11110 0
Q ss_pred --------c-----------------------------------------------------------------------
Q psy17028 147 --------W----------------------------------------------------------------------- 147 (334)
Q Consensus 147 --------~----------------------------------------------------------------------- 147 (334)
|
T Consensus 469 ~~qs~~~af~~~nr~~Ip~~~s~s~VRP~gqGn~~~~~~td~~~~~~GS~s~T~P~~~H~~s~~ls~~~~~N~~~E~p~t 548 (851)
T KOG3723|consen 469 VGQSDDGAFEDENRGDIPASISLSEVRPLGQGNDKLPFKTDTERSQLGSSSVTYPNIIHIDSENLSETVKENSQEETPET 548 (851)
T ss_pred cccCCCcccCcccccCcccccCccccccCCCCCccCccccchhhcccCcceeecccccccCCcchhHHHhhcccccCCcc
Confidence 0
Q ss_pred cCCc--cc----------ccee---------------------------------eecc------c--------------
Q psy17028 148 SATH--YQ----------LDLI---------------------------------RCQV------Y-------------- 162 (334)
Q Consensus 148 ~~~~--~~----------~~~i---------------------------------~c~~------~-------------- 162 (334)
|... || +.|| +||+ |
T Consensus 549 N~~p~eyqd~Vy~F~Ekn~NkIk~Y~~EV~~~~PvP~qCtiE~S~rsK~vaklHFsCQ~RgP~ClysK~~F~~~T~~P~~ 628 (851)
T KOG3723|consen 549 NASPIEYQDKVYLFLEKNLNKIKAYAMEVGKKIPVPDQCTIEDSVRSKCVAKLHFTCQLRGPYCLYSKSSFILITQEPQP 628 (851)
T ss_pred CCCchhhHHHHHHHHHHhHHHHHHHHHHhcccCCCCceeeEecccccceEEEEEEEeecCCceeEeecceeeeeccCCch
Confidence 0000 22 1222 8887 2
Q ss_pred ------------------------------------------------------cCChhHHHHHHHHHhhcCcccccccc
Q psy17028 163 ------------------------------------------------------LIDAQDQEAVLNELRHSGFCDVFEYG 188 (334)
Q Consensus 163 ------------------------------------------------------f~~~~d~~~~~~~L~~~~~f~~f~~~ 188 (334)
||++|||+++++||++++|||+|+++
T Consensus 629 WiH~MFLqfq~s~f~~~geVls~~s~~~q~L~~~W~~L~~~~~~Sf~t~miTs~FPq~KD~~~L~~EL~e~GFfdvF~~s 708 (851)
T KOG3723|consen 629 WIHIMFLQFQQSLFPEPGEVLSIQSHSVQFLRALWEKLQAGGAHSFETAMMTSTFPQQKDLDQLQLELEEVGFFDVFGFS 708 (851)
T ss_pred HHHHHHHHHHHHhcCCccceeecchHHHHHHHHHHHHccccccccchhhHhhhcCCCcccHHHHHHHHHhcCceEEEeec
Confidence 99999999999999999999999999
Q ss_pred ccCCCCCCcceeeeccCCcccccccCC-CCceEEEEeccccCCCcccCCceeEEEEEeCCeeEE-ec-CCCCCccceEEc
Q psy17028 189 VSGGGKEASWGCFLCNHPERAVGFLQD-SHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KG-SKEDKQETPIDV 265 (334)
Q Consensus 189 ~~~~g~~~~w~c~~c~~pe~a~~~~~~-g~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Y-k~-~~~~~p~g~I~L 265 (334)
+++ |+|.||+|+|||||..|+.. |+++.||.||+|+|+|+++|+|++|||+|.+.+|.| +. .+++.....|||
T Consensus 709 ~T~----N~W~Cf~CnnPeKa~yFvn~~gqp~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl 784 (851)
T KOG3723|consen 709 ETA----NAWQCFMCNNPEKATYFVNQDGQPLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSDDCPIDL 784 (851)
T ss_pred ccc----CccceeecCChHHeeeeecCCCCchhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCCCCCCCCccH
Confidence 984 59999999999999887654 589999999999999999999999999999999998 44 344445588999
Q ss_pred CCeeEEE-ec--CCCCCCCceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhccccC
Q psy17028 266 HRIRSVK-VS--RGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEM 322 (334)
Q Consensus 266 ~~~~sV~-~~--~~~~~k~~~F~I~T~~RTy~L~AdS~ee~~eWI~AI~~aIa~~~~ke~ 322 (334)
+++++|+ ++ +++++.|.+|+|+|.|+||.|+|+|++.++||+++|+.|++++++++.
T Consensus 785 ~~IRSVk~v~~kr~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~~r~~ 844 (851)
T KOG3723|consen 785 SKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHAKERES 844 (851)
T ss_pred HHhhhHHHHHhhhhhcccchhhheeecCceEEeecccccCHHHHHHHHHHHHHHHHHHHh
Confidence 9999998 54 455678899999999999999999999999999999999999777665
No 2
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.93 E-value=2.7e-26 Score=188.88 Aligned_cols=96 Identities=58% Similarity=1.044 Sum_probs=82.4
Q ss_pred eEEEEeccccCCCcccCCceeEEEEEeCCeeEEec-CCCCCc-cceEEcCCeeEEEecCCC---CCCCceEEEEeCCeEE
Q psy17028 219 VIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKG-SKEDKQ-ETPIDVHRIRSVKVSRGA---RNIPKAFEIFTGDDSL 293 (334)
Q Consensus 219 lkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~-~~~~~p-~g~I~L~~~~sV~~~~~~---~~k~~~F~I~T~~RTy 293 (334)
+.+|||++|+|+|+++|+|+||||+|+++.|+|++ .....| .|+|||+.+++|+.+.+. .+++++|+|.|++|||
T Consensus 1 ~~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~ 80 (101)
T cd01264 1 LIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTY 80 (101)
T ss_pred CcceEEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCCceE
Confidence 47999999999888899999999999999998655 434344 499999999999875432 2457999999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHHH
Q psy17028 294 ILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 294 ~L~AdS~ee~~eWI~AI~~aI 314 (334)
+|+|+|++++++||++|+.|+
T Consensus 81 ~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 81 ILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEeCCHHHHHHHHHHHHhhC
Confidence 999999999999999999874
No 3
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.88 E-value=1.8e-22 Score=164.70 Aligned_cols=94 Identities=18% Similarity=0.317 Sum_probs=77.5
Q ss_pred ceEEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCCCCCccceEEcCCeeEEEecCCC---CCCCceEEEEeCCeEE
Q psy17028 218 PVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKEDKQETPIDVHRIRSVKVSRGA---RNIPKAFEIFTGDDSL 293 (334)
Q Consensus 218 vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~~~p~g~I~L~~~~sV~~~~~~---~~k~~~F~I~T~~RTy 293 (334)
|+++|||.+|+| . .++|++|||||+++.|+ |+++++..+.|.|+|+.+ .|...++. .+++++|.|.|++|+|
T Consensus 2 v~k~G~L~Kkg~-~--~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~-~v~~~~~~~~~~~~~~~F~I~t~~rt~ 77 (100)
T cd01233 2 VSKKGYLNFPEE-T--NSGWTRRFVVVRRPYLHIYRSDKDPVERGVINLSTA-RVEHSEDQAAMVKGPNTFAVCTKHRGY 77 (100)
T ss_pred cceeEEEEeeCC-C--CCCcEEEEEEEECCEEEEEccCCCccEeeEEEeccc-EEEEccchhhhcCCCcEEEEECCCCEE
Confidence 679999955544 4 59999999999999998 666677789999999965 45443322 1367899999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHHHH
Q psy17028 294 ILKPKNGKNAEQWVQCLSVVVA 315 (334)
Q Consensus 294 ~L~AdS~ee~~eWI~AI~~aIa 315 (334)
+|+|+|++|+++||++|+..++
T Consensus 78 ~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 78 LFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred EEEcCCHHHHHHHHHHhhhhhc
Confidence 9999999999999999998764
No 4
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.88 E-value=2.9e-22 Score=164.67 Aligned_cols=95 Identities=15% Similarity=0.289 Sum_probs=73.9
Q ss_pred EEEEeccccCCCcccCCceeEEEEEeCCeeEEec-CCCCCccceEEcCCee---EEEe--cCC-CCCCCceEEEEeCCeE
Q psy17028 220 IEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKG-SKEDKQETPIDVHRIR---SVKV--SRG-ARNIPKAFEIFTGDDS 292 (334)
Q Consensus 220 keGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~-~~~~~p~g~I~L~~~~---sV~~--~~~-~~~k~~~F~I~T~~RT 292 (334)
+||||.|++|.. .++||+|||||+++.|+|++ ..+..|.|.|+|+.+. +|.. .++ .....++|.|.|++|+
T Consensus 1 KeG~L~K~g~~~--~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rt 78 (103)
T cd01251 1 KEGFMEKTGPKH--TEGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERK 78 (103)
T ss_pred CceeEEecCCCC--CCCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeCCeE
Confidence 689994444443 59999999999999998555 4566899999998754 2321 111 1223359999999999
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHHh
Q psy17028 293 LILKPKNGKNAEQWVQCLSVVVAH 316 (334)
Q Consensus 293 y~L~AdS~ee~~eWI~AI~~aIa~ 316 (334)
|+|+|+|++|+++||+||+.|+..
T Consensus 79 y~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 79 FLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred EEEECCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999854
No 5
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.86 E-value=1.3e-21 Score=161.99 Aligned_cols=93 Identities=22% Similarity=0.304 Sum_probs=76.4
Q ss_pred EEEEeccccCCCc------ccCCceeEEEEEeCCe-eEEe-cC-CCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCC
Q psy17028 220 IEGQLKEKKGRWK------IFKRWRTRYFTLSGAH-LSYK-GS-KEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGD 290 (334)
Q Consensus 220 keGwLkkK~G~~~------~~K~WKrRwFVL~~~~-L~Yk-~~-~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~ 290 (334)
++|||.++.++.. .+|+||||||||+++. |+|+ +. .+..|.|.|||+.|.+|..+.+..+.+++|.|.|++
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~ 80 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEARTGQKFSICILTPD 80 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecccccCCccEEEEECCC
Confidence 4799977766633 3699999999998654 5564 33 456899999999999887655445567899999999
Q ss_pred eEEEEEcCCHHHHHHHHHHHHH
Q psy17028 291 DSLILKPKNGKNAEQWVQCLSV 312 (334)
Q Consensus 291 RTy~L~AdS~ee~~eWI~AI~~ 312 (334)
|+|+|.|+|++|+++||++|+.
T Consensus 81 R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 81 KEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred ceEEEEeCCHHHHHHHHHHHHh
Confidence 9999999999999999999974
No 6
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.86 E-value=1.9e-21 Score=156.22 Aligned_cols=92 Identities=22% Similarity=0.397 Sum_probs=75.7
Q ss_pred EEEEeccccCCCc-ccCCceeEEEEEeCCeeE-EecCCCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCC-eEEEEE
Q psy17028 220 IEGQLKEKKGRWK-IFKRWRTRYFTLSGAHLS-YKGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGD-DSLILK 296 (334)
Q Consensus 220 keGwLkkK~G~~~-~~K~WKrRwFVL~~~~L~-Yk~~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~-RTy~L~ 296 (334)
++|||++|++..+ .+++|++|||||+++.|+ |+++.+..+.|.|+|++++ |....+. .++++|.|.+++ ++|+|+
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~-v~~~~~~-~k~~~F~I~~~~~~~~~f~ 79 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFT-IESAKEV-KKKYAFKVCHPVYKSFYFA 79 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccceEEEccCCE-EEEchhc-CCceEEEECCCCCcEEEEE
Confidence 6899977654332 368999999999999998 6667777899999999975 4433222 467899999999 999999
Q ss_pred cCCHHHHHHHHHHHHHH
Q psy17028 297 PKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 297 AdS~ee~~eWI~AI~~a 313 (334)
|+|++++++||.+|++|
T Consensus 80 a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 80 AETLDDLSQWVNHLITA 96 (96)
T ss_pred eCCHHHHHHHHHHHHhC
Confidence 99999999999999875
No 7
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.86 E-value=2.2e-21 Score=160.25 Aligned_cols=95 Identities=20% Similarity=0.403 Sum_probs=75.6
Q ss_pred eEEEEeccccCCCc--ccCCceeEEEEEeCCeeEEec-CCC--CCccceEEcCCeeEEEecCCCC------CCCceEEEE
Q psy17028 219 VIEGQLKEKKGRWK--IFKRWRTRYFTLSGAHLSYKG-SKE--DKQETPIDVHRIRSVKVSRGAR------NIPKAFEIF 287 (334)
Q Consensus 219 lkeGwLkkK~G~~~--~~K~WKrRwFVL~~~~L~Yk~-~~~--~~p~g~I~L~~~~sV~~~~~~~------~k~~~F~I~ 287 (334)
+++|||.||.+..+ ..++||+|||||+++.|+|++ +.+ ..+.|.|+|..+..|+...+.. ...++|+|+
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~ 80 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVV 80 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEE
Confidence 58999966643322 135999999999999998655 443 3699999999998887533322 246899999
Q ss_pred eCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy17028 288 TGDDSLILKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 288 T~~RTy~L~AdS~ee~~eWI~AI~~a 313 (334)
|++|+|+|.|+|++|+++||+||+.+
T Consensus 81 t~~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 81 HDEGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred eCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999864
No 8
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.85 E-value=7.1e-21 Score=153.24 Aligned_cols=92 Identities=23% Similarity=0.462 Sum_probs=74.1
Q ss_pred EEEEeccccCCCcccCCceeEEEEEeCC--eeEE-ecCCCCCccceEEcCCeeEEEecCCC------CCCCceEEEEeCC
Q psy17028 220 IEGQLKEKKGRWKIFKRWRTRYFTLSGA--HLSY-KGSKEDKQETPIDVHRIRSVKVSRGA------RNIPKAFEIFTGD 290 (334)
Q Consensus 220 keGwLkkK~G~~~~~K~WKrRwFVL~~~--~L~Y-k~~~~~~p~g~I~L~~~~sV~~~~~~------~~k~~~F~I~T~~ 290 (334)
.+||| .|+|.. +++||+|||||+++ .|.| +++.+..|.|.|+|+.+++|...... ....+.|+|.|++
T Consensus 1 ~~G~L-~K~g~~--~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~ 77 (101)
T cd01235 1 CEGYL-YKRGAL--LKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSK 77 (101)
T ss_pred CeEEE-EEcCCC--CCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCC
Confidence 38999 555554 79999999999954 7875 55666789999999998887652211 1245679999999
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHHH
Q psy17028 291 DSLILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 291 RTy~L~AdS~ee~~eWI~AI~~aI 314 (334)
|+|+|.|+|++|+++||+||+.+|
T Consensus 78 r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 78 RTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred ceEEEECCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999875
No 9
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.84 E-value=8.9e-21 Score=153.61 Aligned_cols=89 Identities=26% Similarity=0.363 Sum_probs=70.9
Q ss_pred EEEeccccCCCcccCCceeEEEEEeCC--eeEE-ecCCCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEEEEc
Q psy17028 221 EGQLKEKKGRWKIFKRWRTRYFTLSGA--HLSY-KGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKP 297 (334)
Q Consensus 221 eGwLkkK~G~~~~~K~WKrRwFVL~~~--~L~Y-k~~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~L~A 297 (334)
+||| .|.|..+.+|+||+|||||+++ .|+| +++.+.+|.|.|+|..+..+...+ ..++.|+|.|++|+|+|+|
T Consensus 2 ~GyL-~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~---~~~~~F~i~t~~r~y~l~A 77 (95)
T cd01265 2 CGYL-HKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPR---EEKGRFEIHSNNEVIALKA 77 (95)
T ss_pred cccE-EEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCC---CCCCEEEEEcCCcEEEEEC
Confidence 6999 5554422379999999999854 6874 555677899999999975443221 2368999999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy17028 298 KNGKNAEQWVQCLSVV 313 (334)
Q Consensus 298 dS~ee~~eWI~AI~~a 313 (334)
+|++|+++||++|+.+
T Consensus 78 ~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 78 SSDKQMNYWLQALQSK 93 (95)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999999975
No 10
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.83 E-value=2e-20 Score=154.55 Aligned_cols=94 Identities=30% Similarity=0.409 Sum_probs=72.4
Q ss_pred EEEEeccccCCCc-ccCCceeEEEEEeCCee-------E-EecCCCCCccceEEcCCeeEEEec----CCCCCCCceEEE
Q psy17028 220 IEGQLKEKKGRWK-IFKRWRTRYFTLSGAHL-------S-YKGSKEDKQETPIDVHRIRSVKVS----RGARNIPKAFEI 286 (334)
Q Consensus 220 keGwLkkK~G~~~-~~K~WKrRwFVL~~~~L-------~-Yk~~~~~~p~g~I~L~~~~sV~~~----~~~~~k~~~F~I 286 (334)
.||||+|+++..+ +.++||+|||||+++.| . |+++.+.+|.|.|+|+.+..|... .......+.|.|
T Consensus 1 ~eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i 80 (108)
T cd01266 1 LEGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDI 80 (108)
T ss_pred CceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEE
Confidence 3899955444322 24699999999998874 5 566667789999999998766432 111223467999
Q ss_pred EeCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy17028 287 FTGDDSLILKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 287 ~T~~RTy~L~AdS~ee~~eWI~AI~~a 313 (334)
.|++|+|+|.|+|++|+++||++|+.+
T Consensus 81 ~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 81 ETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 999999999999999999999999864
No 11
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.83 E-value=4.9e-20 Score=151.76 Aligned_cols=88 Identities=19% Similarity=0.353 Sum_probs=73.7
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCC------eeE-EecCCC-----CCccceEEcCCeeEEEecCCCCCCCceE
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGA------HLS-YKGSKE-----DKQETPIDVHRIRSVKVSRGARNIPKAF 284 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~------~L~-Yk~~~~-----~~p~g~I~L~~~~sV~~~~~~~~k~~~F 284 (334)
.|+++||| .|+ |+||||||||+++ .|. |++++. ..|.|+|+|+.|..|....+ ...+++|
T Consensus 1 ~v~k~GyL-~K~------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d-~k~~~~f 72 (101)
T cd01257 1 DVRKSGYL-RKQ------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD-AKHRHLI 72 (101)
T ss_pred CccEEEEE-eEe------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc-cccCeEE
Confidence 37899999 665 6799999999988 687 555543 57999999999998875333 2346899
Q ss_pred EEEeCCeEEEEEcCCHHHHHHHHHHHHH
Q psy17028 285 EIFTGDDSLILKPKNGKNAEQWVQCLSV 312 (334)
Q Consensus 285 ~I~T~~RTy~L~AdS~ee~~eWI~AI~~ 312 (334)
.|.|++++|+|.|+|++|+++||++|..
T Consensus 73 ~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 73 ALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999974
No 12
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.82 E-value=8.5e-20 Score=147.21 Aligned_cols=86 Identities=22% Similarity=0.382 Sum_probs=69.7
Q ss_pred EEEEeccccCCCcccCCceeEEEEEeCCeeEE-ecCCC--CCccceEEcCCeeEEEecCCCCCCCceEEEEeCC-eEEEE
Q psy17028 220 IEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKE--DKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGD-DSLIL 295 (334)
Q Consensus 220 keGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Y-k~~~~--~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~-RTy~L 295 (334)
.+||| .|.|+. +|+||+|||||+++.|+| ++..+ ..+.|.|+|+.+..+ ..+ ..++.|+|.++. ++|+|
T Consensus 1 ~~G~L-~K~~~~--~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~-~~~---~~~~~F~i~~~~~r~~~L 73 (91)
T cd01247 1 TNGVL-SKWTNY--INGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIA-AHE---FDENRFDISVNENVVWYL 73 (91)
T ss_pred CceEE-EEeccc--cCCCceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEE-cCC---CCCCEEEEEeCCCeEEEE
Confidence 37999 777777 899999999999999984 55433 347999999997533 222 235799997776 99999
Q ss_pred EcCCHHHHHHHHHHHHH
Q psy17028 296 KPKNGKNAEQWVQCLSV 312 (334)
Q Consensus 296 ~AdS~ee~~eWI~AI~~ 312 (334)
.|+|++|+++||+||+.
T Consensus 74 ~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 74 RAENSQSRLLWMDSVVR 90 (91)
T ss_pred EeCCHHHHHHHHHHHhh
Confidence 99999999999999975
No 13
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.81 E-value=1.2e-19 Score=153.20 Aligned_cols=99 Identities=20% Similarity=0.446 Sum_probs=78.9
Q ss_pred eEEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCCCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCC-------
Q psy17028 219 VIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGD------- 290 (334)
Q Consensus 219 lkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~------- 290 (334)
.++|||+ |+|+. +++||+|||||+++.|+ |+++.+.++.|.|+|+++. |...++ ..++++|+|.+++
T Consensus 1 ~k~G~L~-K~~~~--~~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~-v~~~~~-~~~~~~F~i~~~~~~~~i~~ 75 (125)
T cd01252 1 DREGWLL-KQGGR--VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENVS-IREVED-PSKPFCFELFSPSDKQQIKA 75 (125)
T ss_pred CcEEEEE-EeCCC--CCCeEeEEEEEECCEEEEEcCCCCCCceEEEECCCcE-EEEccc-CCCCeeEEEECCcccccccc
Confidence 4789995 45444 69999999999999998 5556667899999999764 443322 3567899998765
Q ss_pred --------------eEEEEEcCCHHHHHHHHHHHHHHHHhhccccC
Q psy17028 291 --------------DSLILKPKNGKNAEQWVQCLSVVVAHSQAKEM 322 (334)
Q Consensus 291 --------------RTy~L~AdS~ee~~eWI~AI~~aIa~~~~ke~ 322 (334)
++|+|+|+|++|+++||+||+.++..++.-++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~~~~~ 121 (125)
T cd01252 76 CKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNPFYEM 121 (125)
T ss_pred ccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCchHHH
Confidence 48999999999999999999999987665443
No 14
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.81 E-value=1.1e-19 Score=148.86 Aligned_cols=86 Identities=23% Similarity=0.381 Sum_probs=72.8
Q ss_pred cCCCcccCCceeEEEEEeCCeeEEecCCCCCccceEEcCCeeEEEe-cCCCCCCCceEEEEeCCeEEEEEcCCHHHHHHH
Q psy17028 228 KGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKV-SRGARNIPKAFEIFTGDDSLILKPKNGKNAEQW 306 (334)
Q Consensus 228 ~G~~~~~K~WKrRwFVL~~~~L~Yk~~~~~~p~g~I~L~~~~sV~~-~~~~~~k~~~F~I~T~~RTy~L~AdS~ee~~eW 306 (334)
+++.+..++||+|||+|+++.|+|++++...+.|+|||..+..|+. .++....+++|+|+|++|+|+|+|+|++|+++|
T Consensus 12 ~~~~~~~~n~KkRwF~Lt~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~W 91 (98)
T cd01244 12 RLAWKKVLHFKKRYFQLTTTHLSWAKDVQCKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDW 91 (98)
T ss_pred cCCCccCcCCceeEEEECCCEEEEECCCCCceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHH
Confidence 4555556899999999999999977766678999999999988874 333334568999999999999999999999999
Q ss_pred HHHHHHH
Q psy17028 307 VQCLSVV 313 (334)
Q Consensus 307 I~AI~~a 313 (334)
|+||+.+
T Consensus 92 i~al~k~ 98 (98)
T cd01244 92 LNALEKQ 98 (98)
T ss_pred HHHHhcC
Confidence 9999864
No 15
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.78 E-value=1.1e-18 Score=137.35 Aligned_cols=90 Identities=18% Similarity=0.415 Sum_probs=71.8
Q ss_pred EEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCCC--CCccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEEEE
Q psy17028 220 IEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKE--DKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLILK 296 (334)
Q Consensus 220 keGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~--~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~L~ 296 (334)
++|||.+|+++. .+.|++|||+|+++.|. |+++.+ ..+.+.|+|..++ |........++++|.|.|++++|+|+
T Consensus 1 k~G~L~kk~~~~--~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~-v~~~~~~~~~~~~f~i~~~~~~~~f~ 77 (94)
T cd01250 1 KQGYLYKRSSKS--NKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCT-VRHNGKQPDRRFCFEVISPTKTWHFQ 77 (94)
T ss_pred CcceEEEECCCc--CCCceEEEEEEeCCeEEEEcCCcccccccceEEeccceE-EecCccccCCceEEEEEcCCcEEEEE
Confidence 589996666553 58899999999999998 555544 4578999998764 44333222367899999999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q psy17028 297 PKNGKNAEQWVQCLSV 312 (334)
Q Consensus 297 AdS~ee~~eWI~AI~~ 312 (334)
|+|++++++||.||+.
T Consensus 78 a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 78 ADSEEERDDWISAIQE 93 (94)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999999975
No 16
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.77 E-value=2.4e-18 Score=134.72 Aligned_cols=87 Identities=28% Similarity=0.469 Sum_probs=72.0
Q ss_pred EEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCCCC--CccceEEcCCeeEEEecCCCCCCCceEEEEeCC-eEEEE
Q psy17028 220 IEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKED--KQETPIDVHRIRSVKVSRGARNIPKAFEIFTGD-DSLIL 295 (334)
Q Consensus 220 keGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~~--~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~-RTy~L 295 (334)
++|||++|++. .+.|++|||+|+++.|. |+++.+. .+.+.|+|++++ +.... ..+++|.|.+++ ++|+|
T Consensus 1 ~~G~L~k~~~~---~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~-~~~~~---~~~~~F~i~~~~~~~~~~ 73 (91)
T cd01246 1 VEGWLLKWTNY---LKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAV-ISEDD---SDDKCFTIDTGGDKTLHL 73 (91)
T ss_pred CeEEEEEeccc---CCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEE-EEECC---CCCcEEEEEcCCCCEEEE
Confidence 58999665554 59999999999999998 6666555 799999999974 44422 337899999998 99999
Q ss_pred EcCCHHHHHHHHHHHHHH
Q psy17028 296 KPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 296 ~AdS~ee~~eWI~AI~~a 313 (334)
+|+|.+|+++||.||+.|
T Consensus 74 ~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 74 RANSEEERQRWVDALELA 91 (91)
T ss_pred ECCCHHHHHHHHHHHHhC
Confidence 999999999999999874
No 17
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.76 E-value=4.3e-18 Score=139.60 Aligned_cols=92 Identities=26% Similarity=0.504 Sum_probs=66.9
Q ss_pred ceEEEEeccccCCCcccCCceeEEEEEe-CCeeE-EecCCCCCccceEEcCCeeE--EEecCCCCCCCceEEEE------
Q psy17028 218 PVIEGQLKEKKGRWKIFKRWRTRYFTLS-GAHLS-YKGSKEDKQETPIDVHRIRS--VKVSRGARNIPKAFEIF------ 287 (334)
Q Consensus 218 vlkeGwLkkK~G~~~~~K~WKrRwFVL~-~~~L~-Yk~~~~~~p~g~I~L~~~~s--V~~~~~~~~k~~~F~I~------ 287 (334)
++++||| .|+|.. +++|++|||+|+ ++.|. |++.+.+...+.|+|+..+. ..+...+..+++.|.|.
T Consensus 1 v~k~G~L-~K~g~~--~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~~ 77 (102)
T cd01241 1 VVKEGWL-HKRGEY--IKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPRPNTFIIRCLQWTT 77 (102)
T ss_pred CcEEEEE-EeecCC--CCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCCcceEEEEeccCCc
Confidence 5799999 555555 799999999999 66776 77765444557888877641 11112223567899997
Q ss_pred eCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy17028 288 TGDDSLILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 288 T~~RTy~L~AdS~ee~~eWI~AI~~aI 314 (334)
+++|+| +|+|++|+++||+||+.++
T Consensus 78 ~~~r~f--~a~s~ee~~eWi~ai~~v~ 102 (102)
T cd01241 78 VIERTF--HVESPEEREEWIHAIQTVA 102 (102)
T ss_pred ccCEEE--EeCCHHHHHHHHHHHHhhC
Confidence 345655 5999999999999999863
No 18
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.74 E-value=7.6e-18 Score=138.14 Aligned_cols=88 Identities=22% Similarity=0.348 Sum_probs=71.2
Q ss_pred EEEeccccCCCcccCCceeEEEEEeC----CeeEEe-cCCCCCccceEEcCCeeEEEecCCC-CCCCceEEEEeCCe--E
Q psy17028 221 EGQLKEKKGRWKIFKRWRTRYFTLSG----AHLSYK-GSKEDKQETPIDVHRIRSVKVSRGA-RNIPKAFEIFTGDD--S 292 (334)
Q Consensus 221 eGwLkkK~G~~~~~K~WKrRwFVL~~----~~L~Yk-~~~~~~p~g~I~L~~~~sV~~~~~~-~~k~~~F~I~T~~R--T 292 (334)
.|||.|++|. ..|+||+|||+|.+ ++|+|. +.++.+|.|.|+|..+ .|....+. .++|+||+|.++.+ +
T Consensus 2 ~G~l~K~g~~--~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~-~V~~v~ds~~~r~~cFel~~~~~~~~ 78 (98)
T cd01245 2 KGNLLKRTKS--VTKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA-YLYPVHDSLFGRPNCFQIVERALPTV 78 (98)
T ss_pred CCccccCCCC--cccccceeEEEEecCCCCceEEEEcCCCCCCccceeecccc-EEEEccccccCCCeEEEEecCCCCeE
Confidence 5999544444 25999999999986 899854 4667789999999998 56543332 36789999999986 8
Q ss_pred EEEEcCCHHHHHHHHHHHHH
Q psy17028 293 LILKPKNGKNAEQWVQCLSV 312 (334)
Q Consensus 293 y~L~AdS~ee~~eWI~AI~~ 312 (334)
|+++|++ +|+++||++|+.
T Consensus 79 y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 79 YYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred EEEeCCH-HHHHHHHHHHhc
Confidence 9999999 999999999985
No 19
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.73 E-value=8.4e-17 Score=125.79 Aligned_cols=94 Identities=26% Similarity=0.457 Sum_probs=76.7
Q ss_pred ceEEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCC---CCCccceEEcCCeeEEEecCCC----CCCCceEEEEeC
Q psy17028 218 PVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSK---EDKQETPIDVHRIRSVKVSRGA----RNIPKAFEIFTG 289 (334)
Q Consensus 218 vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~---~~~p~g~I~L~~~~sV~~~~~~----~~k~~~F~I~T~ 289 (334)
++++|||.++. .. .+.|++|||+|+++.|+ |+++. ...+.+.|+|.++......... ...+++|.|.++
T Consensus 1 ~~~~G~L~~~~-~~--~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 1 CIKEGWLLKKS-SS--RKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEEE-SS--SSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred CEEEEEEEEEC-CC--CCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeC
Confidence 47899995555 33 58999999999999998 66655 4579999999999444333321 356799999999
Q ss_pred Ce-EEEEEcCCHHHHHHHHHHHHHHH
Q psy17028 290 DD-SLILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 290 ~R-Ty~L~AdS~ee~~eWI~AI~~aI 314 (334)
++ +|+|+|+|++++++|+++|+.++
T Consensus 78 ~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 NGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 97 99999999999999999999986
No 20
>KOG0930|consensus
Probab=99.66 E-value=2.1e-16 Score=149.76 Aligned_cols=115 Identities=20% Similarity=0.404 Sum_probs=86.1
Q ss_pred cCCcccccccCCC--CceEEEEeccccCCCcccCCceeEEEEEeCCeeEEec-CCCCCccceEEcCCeeEEEecCCCCCC
Q psy17028 204 NHPERAVGFLQDS--HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKG-SKEDKQETPIDVHRIRSVKVSRGARNI 280 (334)
Q Consensus 204 ~~pe~a~~~~~~g--~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~-~~~~~p~g~I~L~~~~sV~~~~~~~~k 280 (334)
..||....-+..- ++..||||.|-+|+. .++||||||+|++|+|+|.+ ..++.|.|.|+|.....-++.+ ..+
T Consensus 244 kIPeddgndlthtffnpdREGWLlKlgg~r--vktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~Ved--P~k 319 (395)
T KOG0930|consen 244 KIPEDDGNDLTHTFFNPDREGWLLKLGGNR--VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVED--PKK 319 (395)
T ss_pred CCCcccCCcchhhccCccccceeeeecCCc--ccchhheeEEeecceeeeeeeccCCCCCcceeccccceeeccC--CCC
Confidence 4455544333332 678999995555544 79999999999999999887 5677899999998763333422 367
Q ss_pred CceEEEEeCC----------------------eEEEEEcCCHHHHHHHHHHHHHHHHhhccccC
Q psy17028 281 PKAFEIFTGD----------------------DSLILKPKNGKNAEQWVQCLSVVVAHSQAKEM 322 (334)
Q Consensus 281 ~~~F~I~T~~----------------------RTy~L~AdS~ee~~eWI~AI~~aIa~~~~ke~ 322 (334)
|+||+|..++ ..|.++|.+.+|+++||++|+.+|+.-+--++
T Consensus 320 P~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pfy~m 383 (395)
T KOG0930|consen 320 PNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPFYEM 383 (395)
T ss_pred CCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcHHHH
Confidence 9999997432 16999999999999999999999985444443
No 21
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.64 E-value=5.3e-16 Score=131.93 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=70.6
Q ss_pred eEEEEeccccCCCcccCCceeEEEEEeCCeeEEecC-CC---CCccceEEcCCeeEEEec---CCCCCCCceEEEEeCC-
Q psy17028 219 VIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGS-KE---DKQETPIDVHRIRSVKVS---RGARNIPKAFEIFTGD- 290 (334)
Q Consensus 219 lkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~-~~---~~p~g~I~L~~~~sV~~~---~~~~~k~~~F~I~T~~- 290 (334)
-..|||...+- .+.+|+|+||||+|+++.|+|++. .+ ..|.|.|+|..|+..++. ++...+++.|.|.+..
T Consensus 2 ~~~GfL~~~q~-~~~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~ 80 (122)
T cd01263 2 EYHGFLTMFED-TSGFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRP 80 (122)
T ss_pred ccceeEEEEec-cCCCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecc
Confidence 35799965441 123699999999999999986542 22 469999999998876652 2345788999996421
Q ss_pred ------------------eE-EEEEcCCHHHHHHHHHHHHHH
Q psy17028 291 ------------------DS-LILKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 291 ------------------RT-y~L~AdS~ee~~eWI~AI~~a 313 (334)
++ |+|+|||.+|+++|+.||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 81 KMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 33 679999999999999999863
No 22
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.63 E-value=1.7e-15 Score=128.02 Aligned_cols=94 Identities=20% Similarity=0.342 Sum_probs=75.3
Q ss_pred EEEEeccccCCCcc---------------cCCceeEEEEEeCCeeEEecC-CCCCccceEEcCCeeEEEecCCC------
Q psy17028 220 IEGQLKEKKGRWKI---------------FKRWRTRYFTLSGAHLSYKGS-KEDKQETPIDVHRIRSVKVSRGA------ 277 (334)
Q Consensus 220 keGwLkkK~G~~~~---------------~K~WKrRwFVL~~~~L~Yk~~-~~~~p~g~I~L~~~~sV~~~~~~------ 277 (334)
+|||+++|.|..+. ..+|++|||+|+++.|.|.++ .+..+.|.|.++....|......
T Consensus 1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~ 80 (121)
T cd01254 1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAV 80 (121)
T ss_pred CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccc
Confidence 57888766665322 127999999999999986654 44589999999887777753321
Q ss_pred -----CCCCceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy17028 278 -----RNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 278 -----~~k~~~F~I~T~~RTy~L~AdS~ee~~eWI~AI~~a 313 (334)
.++.+.|.|.|++|+|.|.|+|++++++||++|+.|
T Consensus 81 ~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 81 ELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred cccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 356789999999999999999999999999999864
No 23
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.62 E-value=2.5e-15 Score=122.33 Aligned_cols=91 Identities=24% Similarity=0.459 Sum_probs=67.3
Q ss_pred EEEecccc-----CCCcccCCceeEEEEEeCCeeE-EecCCCC--Cccc--eEEcCCeeEEEecCCCCCCCceEEEEeCC
Q psy17028 221 EGQLKEKK-----GRWKIFKRWRTRYFTLSGAHLS-YKGSKED--KQET--PIDVHRIRSVKVSRGARNIPKAFEIFTGD 290 (334)
Q Consensus 221 eGwLkkK~-----G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~~--~p~g--~I~L~~~~sV~~~~~~~~k~~~F~I~T~~ 290 (334)
||+|.+|+ |+....++|++|||+|+++.|+ |++++.. .+.+ .|++.++ .|.+..+...++++|.|.+++
T Consensus 2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~-~i~~~~~~~k~~~~F~l~~~~ 80 (104)
T cd01253 2 EGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGA-QCEVASDYTKKKHVFRLRLPD 80 (104)
T ss_pred CceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCC-EEEecCCcccCceEEEEEecC
Confidence 67775443 3433468999999999999997 7765432 3344 6777654 455544434567899997666
Q ss_pred -eEEEEEcCCHHHHHHHHHHHHH
Q psy17028 291 -DSLILKPKNGKNAEQWVQCLSV 312 (334)
Q Consensus 291 -RTy~L~AdS~ee~~eWI~AI~~ 312 (334)
++|+|+|+|++++++||++|+.
T Consensus 81 ~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 81 GAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc
Confidence 7999999999999999999985
No 24
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.60 E-value=7.2e-15 Score=120.29 Aligned_cols=93 Identities=22% Similarity=0.300 Sum_probs=74.1
Q ss_pred ceEEEEeccccCCCcccCCceeEEEEEeCCeeEEecCC----CC--CccceEEcCCeeEEEecCCCCCCCceEEEEeCCe
Q psy17028 218 PVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSK----ED--KQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDD 291 (334)
Q Consensus 218 vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~~----~~--~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~R 291 (334)
.++|||| .|.|+. .++|+.|||.|-++.|.|..++ +. .+.+.|+|++++..+. + +...+++|.|.+.+|
T Consensus 2 ~ikeG~L-~K~~~~--~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~-~-~~~~~~~F~I~~~~r 76 (101)
T cd01219 2 LLKEGSV-LKISST--TEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEG-D-NLERPHSFLVSGKQR 76 (101)
T ss_pred cccceEE-EEEecC--CCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeC-C-CCCcCceEEEecCCc
Confidence 4799999 666655 6899999999999988754421 11 3668899998754332 2 235689999999999
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHHH
Q psy17028 292 SLILKPKNGKNAEQWVQCLSVVVA 315 (334)
Q Consensus 292 Ty~L~AdS~ee~~eWI~AI~~aIa 315 (334)
+|+++|+|++|+++||.||+.||.
T Consensus 77 sf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 77 CLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEEEcCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999985
No 25
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.55 E-value=2.6e-14 Score=115.33 Aligned_cols=85 Identities=28% Similarity=0.521 Sum_probs=70.2
Q ss_pred EEeccccCCCcccCCceeEEEEE--eCCeeEE-ecCCCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEEEEcC
Q psy17028 222 GQLKEKKGRWKIFKRWRTRYFTL--SGAHLSY-KGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKPK 298 (334)
Q Consensus 222 GwLkkK~G~~~~~K~WKrRwFVL--~~~~L~Y-k~~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~L~Ad 298 (334)
|||.||+... ++.|++|||+| ..+.|.| +++.+....|+|+|... .|.+. .+...|.|.++++.|+|.|.
T Consensus 1 G~llKkrr~~--lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a-~is~~----~~~~~I~idsg~~i~hLKa~ 73 (89)
T PF15409_consen 1 GWLLKKRRKP--LQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLA-VISAN----KKSRRIDIDSGDEIWHLKAK 73 (89)
T ss_pred Ccceeecccc--CCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccce-EEEec----CCCCEEEEEcCCeEEEEEcC
Confidence 7887777766 89999999999 7888985 44555578899999876 34332 23468999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy17028 299 NGKNAEQWVQCLSVV 313 (334)
Q Consensus 299 S~ee~~eWI~AI~~a 313 (334)
|+++.+.|++||+.|
T Consensus 74 s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 74 SQEDFQRWVSALQKA 88 (89)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999999875
No 26
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.55 E-value=3.7e-14 Score=119.83 Aligned_cols=96 Identities=22% Similarity=0.359 Sum_probs=75.0
Q ss_pred EEEEecccc-----CCCcc--cCCceeEEEEEeCCeeE-EecCCC-------CCccceEEcCCeeEEEecCCCCCCCceE
Q psy17028 220 IEGQLKEKK-----GRWKI--FKRWRTRYFTLSGAHLS-YKGSKE-------DKQETPIDVHRIRSVKVSRGARNIPKAF 284 (334)
Q Consensus 220 keGwLkkK~-----G~~~~--~K~WKrRwFVL~~~~L~-Yk~~~~-------~~p~g~I~L~~~~sV~~~~~~~~k~~~F 284 (334)
+||+|.+|. |+... .+.|++||+||+++.|+ ||++.. ......|.|..++ +.+..+..++++.|
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~-~~ia~dy~Kr~~VF 80 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHAL-ATRASDYSKKPHVF 80 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccce-eEeeccccCCCcEE
Confidence 578886663 33211 37899999999999998 988743 3456889998875 23333445778999
Q ss_pred EEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHh
Q psy17028 285 EIFTGD-DSLILKPKNGKNAEQWVQCLSVVVAH 316 (334)
Q Consensus 285 ~I~T~~-RTy~L~AdS~ee~~eWI~AI~~aIa~ 316 (334)
.|.+++ +.|.|+|+|.+||++||++|+.+.+.
T Consensus 81 ~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 81 RLRTADWREFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred EEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999987 79999999999999999999998764
No 27
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.55 E-value=1e-13 Score=106.05 Aligned_cols=94 Identities=34% Similarity=0.566 Sum_probs=74.5
Q ss_pred ceEEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCCC---CCccceEEcCCeeEEEecCCC--CCCCceEEEEeCCe
Q psy17028 218 PVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKE---DKQETPIDVHRIRSVKVSRGA--RNIPKAFEIFTGDD 291 (334)
Q Consensus 218 vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~---~~p~g~I~L~~~~sV~~~~~~--~~k~~~F~I~T~~R 291 (334)
++++|||.++.+.. ...|++|||+|.++.|. |++... ..+.+.|+|.++ .|....+. ...+++|.|.++++
T Consensus 1 ~~~~G~l~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~ 77 (102)
T smart00233 1 VIKEGWLYKKSGGK--KKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADR 77 (102)
T ss_pred CceeEEEEEeCCCc--cCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCC
Confidence 36899996555422 47899999999999998 665443 467899999998 55443322 13578999999998
Q ss_pred -EEEEEcCCHHHHHHHHHHHHHHH
Q psy17028 292 -SLILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 292 -Ty~L~AdS~ee~~eWI~AI~~aI 314 (334)
+|+|.|+|++++++|+.+|+.++
T Consensus 78 ~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 28
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.52 E-value=6.7e-14 Score=116.83 Aligned_cols=92 Identities=25% Similarity=0.403 Sum_probs=54.8
Q ss_pred EEEEeccccCCCcccCCceeEEEEEe-CCeeEEecCCCC--------------CccceEEcC----CeeEEEe-cCCCCC
Q psy17028 220 IEGQLKEKKGRWKIFKRWRTRYFTLS-GAHLSYKGSKED--------------KQETPIDVH----RIRSVKV-SRGARN 279 (334)
Q Consensus 220 keGwLkkK~G~~~~~K~WKrRwFVL~-~~~L~Yk~~~~~--------------~p~g~I~L~----~~~sV~~-~~~~~~ 279 (334)
++|||.|+...+ .+.||+|||+|+ ++.|.|++.+.. ...+..... ....+.. ......
T Consensus 1 k~G~l~K~~~~~--~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLYKWGNKF--GKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEEE--TTS---S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEEEecCCC--CcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 689996666654 799999999999 999986655111 122222221 1111110 011112
Q ss_pred CCceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy17028 280 IPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 280 k~~~F~I~T~~RTy~L~AdS~ee~~eWI~AI~~a 313 (334)
....|.|.|+.++|+|.|+|.+|+.+||+||+.|
T Consensus 79 ~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 3468999999999999999999999999999875
No 29
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.47 E-value=5.5e-13 Score=109.43 Aligned_cols=93 Identities=19% Similarity=0.287 Sum_probs=68.2
Q ss_pred ceEEEEeccccCCCcccCCceeEEEEEeCCeeEEecC-CCC---CccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEE
Q psy17028 218 PVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGS-KED---KQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSL 293 (334)
Q Consensus 218 vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~-~~~---~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy 293 (334)
-++|||| .|.++. +.|+|+||.+.+.-|++... .+. .+.+.|+|.+++ |+..+++.+.+++|+|.+++++|
T Consensus 2 ~ikEG~L-~K~~~k---~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~~~~~~~F~I~~~~ks~ 76 (99)
T cd01220 2 FIRQGCL-LKLSKK---GLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGML-TEESEHEWGVPHCFTIFGGQCAI 76 (99)
T ss_pred eeeEEEE-EEEeCC---CCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceE-EeeccCCcCCceeEEEEcCCeEE
Confidence 3799999 555543 55776666665544443332 222 378999999986 44323323567999999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHHHH
Q psy17028 294 ILKPKNGKNAEQWVQCLSVVVA 315 (334)
Q Consensus 294 ~L~AdS~ee~~eWI~AI~~aIa 315 (334)
.|+|+|++|+++||++|+.+|.
T Consensus 77 ~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 77 TVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEECCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999985
No 30
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.45 E-value=6.1e-13 Score=100.86 Aligned_cols=91 Identities=30% Similarity=0.474 Sum_probs=71.5
Q ss_pred EEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCCC---CCccceEEcCCeeEEEecCCCCCCCceEEEEeCC-eEEE
Q psy17028 220 IEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKE---DKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGD-DSLI 294 (334)
Q Consensus 220 keGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~---~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~-RTy~ 294 (334)
++|||+++.+.. ...|++|||+|.++.|. |+...+ ..+.+.|+|.++ .|....+..+.+++|.|.+.+ ++|+
T Consensus 1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~f~i~~~~~~~~~ 77 (96)
T cd00821 1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGA-EVEESPDDSGRKNCFEIRTPDGRSYL 77 (96)
T ss_pred CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCC-EEEECCCcCCCCcEEEEecCCCcEEE
Confidence 479995555432 36799999999999997 666554 578999999994 454433322457899999988 8999
Q ss_pred EEcCCHHHHHHHHHHHHHH
Q psy17028 295 LKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 295 L~AdS~ee~~eWI~AI~~a 313 (334)
|+|+|++++++|+.+|+.+
T Consensus 78 ~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 78 LQAESEEEREEWIEALQSA 96 (96)
T ss_pred EEeCCHHHHHHHHHHHhcC
Confidence 9999999999999999863
No 31
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=99.39 E-value=4.1e-12 Score=97.04 Aligned_cols=92 Identities=25% Similarity=0.428 Sum_probs=69.9
Q ss_pred EEEeccccCCCc-ccCCceeEEEEEeCCeeE-EecCCCCCcc-ceEEcCCeeEEEecCCCCCCCceEEEEeC---CeEEE
Q psy17028 221 EGQLKEKKGRWK-IFKRWRTRYFTLSGAHLS-YKGSKEDKQE-TPIDVHRIRSVKVSRGARNIPKAFEIFTG---DDSLI 294 (334)
Q Consensus 221 eGwLkkK~G~~~-~~K~WKrRwFVL~~~~L~-Yk~~~~~~p~-g~I~L~~~~sV~~~~~~~~k~~~F~I~T~---~RTy~ 294 (334)
+|||+.+..... ..+.|++|||+|.++.|. |+++.+..+. +.+++..++ |....+..+.+++|.|.+. .+.|+
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~~~~~ 80 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGRRVFV 80 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCCCCCceEEEECCCCCcEEEE
Confidence 689955443320 026899999999999998 5555544444 689999987 6654332346789999998 68999
Q ss_pred EEcCCHHHHHHHHHHHHHH
Q psy17028 295 LKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 295 L~AdS~ee~~eWI~AI~~a 313 (334)
|+|+|+++++.|+.+|+.+
T Consensus 81 ~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 81 FQADSEEEAQEWVEALQQA 99 (99)
T ss_pred EEcCCHHHHHHHHHHHhcC
Confidence 9999999999999999864
No 32
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.37 E-value=3e-12 Score=106.33 Aligned_cols=80 Identities=14% Similarity=0.282 Sum_probs=58.8
Q ss_pred cCCceeEEEEEeCCeeEE-ecCCCCCccceEEc--CCeeEEEecCCCCCCCceEEEEeCC----eEEEEEcCCHHHHHHH
Q psy17028 234 FKRWRTRYFTLSGAHLSY-KGSKEDKQETPIDV--HRIRSVKVSRGARNIPKAFEIFTGD----DSLILKPKNGKNAEQW 306 (334)
Q Consensus 234 ~K~WKrRwFVL~~~~L~Y-k~~~~~~p~g~I~L--~~~~sV~~~~~~~~k~~~F~I~T~~----RTy~L~AdS~ee~~eW 306 (334)
+|.||+|||+|+++.|+| |+..+..+.+.|+| .+|. |........+.+.|.+.+|. |+|+|.|+|+++..+|
T Consensus 17 ~K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gce-v~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~W 95 (106)
T cd01237 17 LKGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCE-VTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKW 95 (106)
T ss_pred hhhheeEEEEEeCCEEEEEccchhcCCCCeEEEecCceE-EcccccccccceEEEEecCCccCCeEEEEECCCHHHHHHH
Confidence 589999999999999985 44443444555555 4543 32221112345888888887 8999999999999999
Q ss_pred HHHHHHHH
Q psy17028 307 VQCLSVVV 314 (334)
Q Consensus 307 I~AI~~aI 314 (334)
|.|++.|.
T Consensus 96 maa~rlas 103 (106)
T cd01237 96 MAACRLAS 103 (106)
T ss_pred HHHHHHhh
Confidence 99999874
No 33
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=99.33 E-value=1.4e-11 Score=102.27 Aligned_cols=95 Identities=28% Similarity=0.365 Sum_probs=71.8
Q ss_pred ccCCC-CceEEEEeccccCCCcccCCceeEEEEEeCC-eeEEecCCCCCccceEEcCCeeEEEecCCCCCCCceEEEEeC
Q psy17028 212 FLQDS-HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGA-HLSYKGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTG 289 (334)
Q Consensus 212 ~~~~g-~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~-~L~Yk~~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~ 289 (334)
++.+| .++++|.+.|++|- + +|+|||+|+++ .|+|-+......+|.|+++...+|++.. ...|.|.||
T Consensus 6 fl~~ge~Il~~g~v~K~kgl---~--~kkR~liLTd~PrL~Yvdp~~~~~KGeI~~~~~l~v~~k~-----~~~F~I~tp 75 (104)
T PF14593_consen 6 FLNPGELILKQGYVKKRKGL---F--AKKRQLILTDGPRLFYVDPKKMVLKGEIPWSKELSVEVKS-----FKTFFIHTP 75 (104)
T ss_dssp GTT-T--EEEEEEEEEEETT---E--EEEEEEEEETTTEEEEEETTTTEEEEEE--STT-EEEECS-----SSEEEEEET
T ss_pred hhcCCCeEEEEEEEEEeece---E--EEEEEEEEccCCEEEEEECCCCeECcEEecCCceEEEEcc-----CCEEEEECC
Confidence 44545 79999999665554 3 89999999998 7888887666778999999988887743 247999999
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy17028 290 DDSLILKPKNGKNAEQWVQCLSVVVAHS 317 (334)
Q Consensus 290 ~RTy~L~AdS~ee~~eWI~AI~~aIa~~ 317 (334)
+|+|+|.. ...++.+|+++|+.++.+.
T Consensus 76 ~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 76 KRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp TEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred CcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 99999988 5556899999999998763
No 34
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.31 E-value=1.9e-11 Score=103.01 Aligned_cols=94 Identities=21% Similarity=0.474 Sum_probs=62.2
Q ss_pred EEEEeccc-----cCCCc--ccCCceeEEEEEeCCeeE-EecCC--------------CCCccceEEcCCeeEEEecCCC
Q psy17028 220 IEGQLKEK-----KGRWK--IFKRWRTRYFTLSGAHLS-YKGSK--------------EDKQETPIDVHRIRSVKVSRGA 277 (334)
Q Consensus 220 keGwLkkK-----~G~~~--~~K~WKrRwFVL~~~~L~-Yk~~~--------------~~~p~g~I~L~~~~sV~~~~~~ 277 (334)
+||||.+| .|+.. .-+.|+.-|+||+++.|+ |++.. ..+|.+.|+|..+.. ....+.
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a-~~a~dY 80 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALA-EIASDY 80 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EE-EEETTB
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEE-EeCccc
Confidence 68888665 23322 357899999999999998 88721 113456799988643 345566
Q ss_pred CCCCceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHH
Q psy17028 278 RNIPKAFEIFTGD-DSLILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 278 ~~k~~~F~I~T~~-RTy~L~AdS~ee~~eWI~AI~~aI 314 (334)
+++++.|.+.|++ ..|.|+|.|++||++||++|+-+-
T Consensus 81 ~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 TKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 6789999999987 589999999999999999999763
No 35
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.19 E-value=1.7e-10 Score=94.72 Aligned_cols=94 Identities=19% Similarity=0.311 Sum_probs=69.7
Q ss_pred ceEEEEeccccCCCcccCC-ceeEEEEEeCCeeE-EecCCCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCC-----
Q psy17028 218 PVIEGQLKEKKGRWKIFKR-WRTRYFTLSGAHLS-YKGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGD----- 290 (334)
Q Consensus 218 vlkeGwLkkK~G~~~~~K~-WKrRwFVL~~~~L~-Yk~~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~----- 290 (334)
++..|||--..- +++|. =|+|||||+.+.|+ |+++.++++++.|+|.+...=++.++--+++++|++..++
T Consensus 1 virkgwl~~~n~--~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvy 78 (110)
T cd01256 1 VIRKGWLSISNV--GIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVY 78 (110)
T ss_pred CeeeeeEEeecc--ceecCCCcceEEEEecceeeeecccccccccceeeccccEEEeecccccCCCcEEEEEcCcccccc
Confidence 467888822211 11322 59999999999999 6777778899999999875433444445678999998765
Q ss_pred ---eEEEEEcCCHHHHHHHHHHHHHH
Q psy17028 291 ---DSLILKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 291 ---RTy~L~AdS~ee~~eWI~AI~~a 313 (334)
++..|+|+|+++++.|-..+-.|
T Consensus 79 kd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 79 KDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cchheeeecCCCHHHHHHHHHHHHhc
Confidence 36889999999999998876543
No 36
>KOG1090|consensus
Probab=99.16 E-value=1.1e-11 Score=132.36 Aligned_cols=95 Identities=26% Similarity=0.451 Sum_probs=78.4
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCC--eeEEec-CCCCCccceEEcCCeeEEEecC-CCCCCCceEEEEeCCeE
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGA--HLSYKG-SKEDKQETPIDVHRIRSVKVSR-GARNIPKAFEIFTGDDS 292 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~--~L~Yk~-~~~~~p~g~I~L~~~~sV~~~~-~~~~k~~~F~I~T~~RT 292 (334)
+.+.+|+| .|+|.. +|-||.|||||+.+ +|.|++ ..+++|+|.|||..+.+|.... ...+.+-.|++.|.+|+
T Consensus 1633 Nr~~eG~L-yKrGA~--lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~vdekgffdlktt~rv 1709 (1732)
T KOG1090|consen 1633 NRIPEGYL-YKRGAK--LKLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKTVDEKGFFDLKTTNRV 1709 (1732)
T ss_pred ccCcccch-hhcchh--hcccccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccccCccceeeeehhhHH
Confidence 45679999 666766 79999999999976 577666 4677899999999998887521 11234558999999999
Q ss_pred EEEEcCCHHHHHHHHHHHHHHH
Q psy17028 293 LILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 293 y~L~AdS~ee~~eWI~AI~~aI 314 (334)
|.|+|.|...+++|+.+|++++
T Consensus 1710 ynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1710 YNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred HHHHhccchHHHHHHHHHHHhh
Confidence 9999999999999999999986
No 37
>KOG0690|consensus
Probab=99.15 E-value=3.9e-11 Score=117.19 Aligned_cols=101 Identities=24% Similarity=0.430 Sum_probs=74.3
Q ss_pred CCCceEEEEeccccCCCcccCCceeEEEEEeCC-eeE-EecCCCC-----CccceEEcCCeeEEEecCCCCCCCceEEEE
Q psy17028 215 DSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGA-HLS-YKGSKED-----KQETPIDVHRIRSVKVSRGARNIPKAFEIF 287 (334)
Q Consensus 215 ~g~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~-~L~-Yk~~~~~-----~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~ 287 (334)
+-.+++|||| .|+|.. +|||+.|||+|..+ .|. |+..+.+ .|+.-+-+.+|..++. ++.+|+.|.|.
T Consensus 12 ~~~vvkEgWl-hKrGE~--IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~---erPrPntFiiR 85 (516)
T KOG0690|consen 12 QEDVVKEGWL-HKRGEH--IKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKT---ERPRPNTFIIR 85 (516)
T ss_pred hhhhHHhhhH-hhcchh--hhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhc---cCCCCceEEEE
Confidence 3479999999 667777 89999999999754 566 9875432 2344444445544433 35789999998
Q ss_pred eCCeE----EEEEcCCHHHHHHHHHHHHHHHHhhcccc
Q psy17028 288 TGDDS----LILKPKNGKNAEQWVQCLSVVVAHSQAKE 321 (334)
Q Consensus 288 T~~RT----y~L~AdS~ee~~eWI~AI~~aIa~~~~ke 321 (334)
+-..| -.|.++|++++++|+.||+.+.......|
T Consensus 86 cLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l~q~e 123 (516)
T KOG0690|consen 86 CLQWTTVIERTFYVESAEERQEWIEAIQAVSNRLKQEE 123 (516)
T ss_pred eeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhhhhhh
Confidence 87764 45789999999999999999876655444
No 38
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.14 E-value=1.9e-10 Score=96.60 Aligned_cols=92 Identities=21% Similarity=0.371 Sum_probs=73.5
Q ss_pred eEEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCCCCCccceEEcCCeeEEEecCCC----CCCCceEEEEeCCeEE
Q psy17028 219 VIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKEDKQETPIDVHRIRSVKVSRGA----RNIPKAFEIFTGDDSL 293 (334)
Q Consensus 219 lkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~~~p~g~I~L~~~~sV~~~~~~----~~k~~~F~I~T~~RTy 293 (334)
++||||.--...- +.|||+|++|+.+.+. |+++.+.++...|+|+.+.+|+...+. ...++||+|.|.+.+|
T Consensus 1 lkEGWmVHyT~~d---~~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~vY 77 (117)
T cd01239 1 LKEGWMVHYTSSD---NRRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTNVY 77 (117)
T ss_pred CccceEEEEecCc---cceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecCEEE
Confidence 5799993322222 7899999999999998 888888899999999999999854332 2467999999999999
Q ss_pred EEEcC--------------------CHHHHHHHHHHHHHH
Q psy17028 294 ILKPK--------------------NGKNAEQWVQCLSVV 313 (334)
Q Consensus 294 ~L~Ad--------------------S~ee~~eWI~AI~~a 313 (334)
+...+ ..+.+..|-+||++|
T Consensus 78 ~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 78 FVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 99775 245678999999864
No 39
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.04 E-value=2.2e-09 Score=89.06 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=73.8
Q ss_pred ceEEEEeccccCCCcccCCceeEEEEEeCCeeEEecC--CC--CCccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEE
Q psy17028 218 PVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGS--KE--DKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSL 293 (334)
Q Consensus 218 vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~--~~--~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy 293 (334)
-++||-| .|-.+ |.-+.|||.|=++.|.|-+. .. -...+.|+|.++..+.+.++ ...+++|.|.++.++|
T Consensus 4 li~eG~L-~K~~r----k~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~-~~~~n~f~I~~~~kSf 77 (104)
T cd01218 4 LVGEGVL-TKMCR----KKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDD-GIERNGWIIKTPTKSF 77 (104)
T ss_pred EEecCcE-EEeec----CCCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCc-ccccceEEEecCCeEE
Confidence 4789999 44432 55788999999999999542 11 13568899999865555432 3457899999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHhh
Q psy17028 294 ILKPKNGKNAEQWVQCLSVVVAHS 317 (334)
Q Consensus 294 ~L~AdS~ee~~eWI~AI~~aIa~~ 317 (334)
.++|+|++|+.+|+.+|+.||.+.
T Consensus 78 ~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 78 AVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874
No 40
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.03 E-value=4.9e-10 Score=92.70 Aligned_cols=96 Identities=19% Similarity=0.325 Sum_probs=70.1
Q ss_pred eEEEEeccccCCCcccCCceeEEEEEeCCe-----eE-EecCCCCCccceEEcCCeeEEEec---C-------CCCCCCc
Q psy17028 219 VIEGQLKEKKGRWKIFKRWRTRYFTLSGAH-----LS-YKGSKEDKQETPIDVHRIRSVKVS---R-------GARNIPK 282 (334)
Q Consensus 219 lkeGwLkkK~G~~~~~K~WKrRwFVL~~~~-----L~-Yk~~~~~~p~g~I~L~~~~sV~~~---~-------~~~~k~~ 282 (334)
.++|||.+.+|.. .|.||||||+|.+-. +. |+..+ ..|...|.|++-+ |.-. + +..+..+
T Consensus 3 k~sGyL~k~Gg~~--~KkWKKRwFvL~qvsQYtfamcsy~ekk-s~P~e~~qldGyT-vDy~~~~~~~~~~~~~~~gg~~ 78 (117)
T cd01234 3 KHCGYLYAIGKNV--WKKWKKRFFVLVQVSQYTFAMCSYREKK-AEPTEFIQLDGYT-VDYMPESDPDPNSELSLQGGRH 78 (117)
T ss_pred ceeEEEEeccchh--hhhhheeEEEEEchhHHHHHHHhhhhhc-CCchhheeecceE-EeccCCCCCCcccccccccchh
Confidence 4899995545424 699999999999642 23 55433 5688888888864 4421 1 1123456
Q ss_pred eEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q psy17028 283 AFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQ 318 (334)
Q Consensus 283 ~F~I~T~~RTy~L~AdS~ee~~eWI~AI~~aIa~~~ 318 (334)
.|..+-.+.+..|..+++.|+.-||+|+-.|-.|++
T Consensus 79 ff~avkegd~~~fa~~de~~r~lwvqa~yratgqsh 114 (117)
T cd01234 79 FFNAVKEGDELKFATDDENERHLWVQAMYRATGQSH 114 (117)
T ss_pred hhheeccCcEEEEeccchHHHHHHHHHHHHHcCccc
Confidence 788888888999999999999999999998876643
No 41
>KOG2059|consensus
Probab=99.00 E-value=4.8e-10 Score=116.97 Aligned_cols=102 Identities=27% Similarity=0.453 Sum_probs=82.3
Q ss_pred CceEEEEeccc--cCCCccc-CCceeEEEEEeCCeeEEecCCCCCccceEEcCCeeEEE-ecCCCCCCCceEEEEeCCeE
Q psy17028 217 HPVIEGQLKEK--KGRWKIF-KRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVK-VSRGARNIPKAFEIFTGDDS 292 (334)
Q Consensus 217 ~vlkeGwLkkK--~G~~~~~-K~WKrRwFVL~~~~L~Yk~~~~~~p~g~I~L~~~~sV~-~~~~~~~k~~~F~I~T~~RT 292 (334)
.+.++|.| .| +|+.++. ++.|+|||-|++..|+|.++++..|.++|+|..+..|+ +.+...+.+|+|+|++++|+
T Consensus 564 ~v~k~glm-~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~drt 642 (800)
T KOG2059|consen 564 VVLKEGLM-IKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTDRT 642 (800)
T ss_pred ceecccce-EeccccccchhhhhhhheEEEeccceeEEecCCccCcccceeHHHHHHHHHhhhhccCCCceEEEEecCcc
Confidence 34455555 44 3332223 78999999999999999998888999999999999887 43444467899999999999
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHHhhcc
Q psy17028 293 LILKPKNGKNAEQWVQCLSVVVAHSQA 319 (334)
Q Consensus 293 y~L~AdS~ee~~eWI~AI~~aIa~~~~ 319 (334)
.|++|.+-.|.++|+++|.++...++.
T Consensus 643 ly~Q~~n~vEandWldaL~kvs~~N~~ 669 (800)
T KOG2059|consen 643 LYVQAKNCVEANDWLDALRKVSCCNQN 669 (800)
T ss_pred eeEecCCchHHHHHHHHHHHHhccCcc
Confidence 999999999999999999998766543
No 42
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.86 E-value=2.9e-08 Score=83.03 Aligned_cols=95 Identities=21% Similarity=0.438 Sum_probs=69.8
Q ss_pred EEEEeccccC-CCcccCCceeEEEEEeCCeeE-EecCCC---CCccceEEcCCeeEEEe-------cCCCCCCCceEEEE
Q psy17028 220 IEGQLKEKKG-RWKIFKRWRTRYFTLSGAHLS-YKGSKE---DKQETPIDVHRIRSVKV-------SRGARNIPKAFEIF 287 (334)
Q Consensus 220 keGwLkkK~G-~~~~~K~WKrRwFVL~~~~L~-Yk~~~~---~~p~g~I~L~~~~sV~~-------~~~~~~k~~~F~I~ 287 (334)
+||||+..+. +.+--+.|+++|.||.+..|+ |..+.+ ..|...||++....|.. ..+.+..|+.|.|.
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~ 81 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQIL 81 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEEE
Confidence 6899954332 211125799999999999998 765543 34778899877544331 11234679999998
Q ss_pred eCC--eEEEEEcCCHHHHHHHHHHHHHHH
Q psy17028 288 TGD--DSLILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 288 T~~--RTy~L~AdS~ee~~eWI~AI~~aI 314 (334)
..+ ++.+|-|++++|.++|+.+|..-|
T Consensus 82 ~~~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 82 YANEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred eCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence 877 799999999999999999998755
No 43
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.77 E-value=4.4e-08 Score=79.10 Aligned_cols=86 Identities=19% Similarity=0.265 Sum_probs=69.7
Q ss_pred ceEEEEeccccCCCcccCCceeEEEEEeCC-eeEEecCCCCCccceEEcCC-eeEEEecCCCCCCCceEEEEeCCeEEEE
Q psy17028 218 PVIEGQLKEKKGRWKIFKRWRTRYFTLSGA-HLSYKGSKEDKQETPIDVHR-IRSVKVSRGARNIPKAFEIFTGDDSLIL 295 (334)
Q Consensus 218 vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~-~L~Yk~~~~~~p~g~I~L~~-~~sV~~~~~~~~k~~~F~I~T~~RTy~L 295 (334)
+++.|.+.+|+|-+ +|+|=++|++. .|+|-+......+|.|+++. ...|++.. +..|.|.||+|+|+|
T Consensus 1 Il~~g~v~Kr~glf-----~kkR~LiLTd~PrL~yvdp~~~~~KgeIp~s~~~l~v~~~~-----~~~F~I~Tp~rty~l 70 (89)
T cd01262 1 ILKIGAVKKRKGLF-----AKKRQLILTNGPRLIYVDPVKKVVKGEIPWSDVELRVEVKN-----SSHFFVHTPNKVYSF 70 (89)
T ss_pred Cceeeeeeehhccc-----cceeeEEEecCceEEEEcCCcCeEEeEecccccceEEEEec-----CccEEEECCCceEEE
Confidence 46889997777743 79999999986 56788876667889999999 66676543 257999999999999
Q ss_pred EcCCHHHHHHHHHHHHHHH
Q psy17028 296 KPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 296 ~AdS~ee~~eWI~AI~~aI 314 (334)
. |-...+.+|+++|..+.
T Consensus 71 e-D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 71 E-DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred E-CCCCCHHHHHHHHHHHh
Confidence 5 55689999999998763
No 44
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.73 E-value=1.6e-07 Score=79.74 Aligned_cols=93 Identities=22% Similarity=0.340 Sum_probs=66.2
Q ss_pred eEEEEeccc-cCCCcccCCceeEEEEEeCCeeE-EecCCC--C----CccceEEcC-CeeEEEe-------cCCCCCCCc
Q psy17028 219 VIEGQLKEK-KGRWKIFKRWRTRYFTLSGAHLS-YKGSKE--D----KQETPIDVH-RIRSVKV-------SRGARNIPK 282 (334)
Q Consensus 219 lkeGwLkkK-~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~--~----~p~g~I~L~-~~~sV~~-------~~~~~~k~~ 282 (334)
..||||+.. .|+. -|.|+|+|.||.+..|+ |..+.+ . .+.-.||++ ...+|.. ....+..|+
T Consensus 3 ~~EGwvkvP~~~~~--krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~ 80 (122)
T cd01243 3 AYEGHVKIPKPGGV--KKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPC 80 (122)
T ss_pred cceeeEeccCCCCc--ccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCe
Confidence 579999543 2232 37899999999999998 654432 2 244568884 4444431 112346799
Q ss_pred eEEEEeCC-------eEEEEEcCCHHHHHHHHHHHHHH
Q psy17028 283 AFEIFTGD-------DSLILKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 283 ~F~I~T~~-------RTy~L~AdS~ee~~eWI~AI~~a 313 (334)
.|.|.+.. .+.+|-|+|+.|.++|+.||...
T Consensus 81 If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 81 IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 99998643 68999999999999999999864
No 45
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.73 E-value=4.1e-08 Score=81.51 Aligned_cols=88 Identities=16% Similarity=0.336 Sum_probs=59.5
Q ss_pred EEEEeccccCCCcccC-CceeEEEEEeCC-eeE----EecC-----CCC-CccceEEcCCeeEEEecCCCCCCCceEEEE
Q psy17028 220 IEGQLKEKKGRWKIFK-RWRTRYFTLSGA-HLS----YKGS-----KED-KQETPIDVHRIRSVKVSRGARNIPKAFEIF 287 (334)
Q Consensus 220 keGwLkkK~G~~~~~K-~WKrRwFVL~~~-~L~----Yk~~-----~~~-~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~ 287 (334)
++|||..+.++. ++ +|.+.||...+. .++ +... ... .....|.|..| +++..+. ..+.+||+|.
T Consensus 1 k~GYLy~~~k~~--~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc-~~r~~~~-~dRRFCFei~ 76 (104)
T cd01249 1 KEGYLYMQEKSK--FGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSC-SRRKTES-IDKRFCFDVE 76 (104)
T ss_pred CCceEEEEcCCC--CCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeec-cccccCC-ccceeeEeee
Confidence 589996655443 44 899999998863 332 3221 111 11234566665 3443332 3567999999
Q ss_pred eCCe--EEEEEcCCHHHHHHHHHHHH
Q psy17028 288 TGDD--SLILKPKNGKNAEQWVQCLS 311 (334)
Q Consensus 288 T~~R--Ty~L~AdS~ee~~eWI~AI~ 311 (334)
++++ ++.|+|+|++++..||+|+.
T Consensus 77 ~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 77 VEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred ecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 8887 89999999999999999985
No 46
>KOG0521|consensus
Probab=98.68 E-value=1.1e-08 Score=110.21 Aligned_cols=100 Identities=24% Similarity=0.430 Sum_probs=78.5
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCCeeEEecCCCCCc-cceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEEE
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQ-ETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLIL 295 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~~~~~p-~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~L 295 (334)
....+|+|++|.+.. .+.|+||||-..++.+.|........ ....||..| +|+.....+.+.+||+|++++++|.|
T Consensus 273 ~~~~~~~l~~k~~~~--~~tw~r~~f~~q~~~l~~~~r~~~~~~~~~~dL~~c-svk~~~~~~drr~CF~iiS~tks~~l 349 (785)
T KOG0521|consen 273 GYRMEGYLRKKASNA--SKTWKRRWFSIQDGQLGYQHRGADAENVLIEDLRTC-SVKPDAEQRDRRFCFEIISPTKSYLL 349 (785)
T ss_pred hhhhhhhhhhhcccc--hhhHHhhhhhhhccccccccccccccccccccchhc-cccCCcccccceeeEEEecCCcceEE
Confidence 467889998888775 79999999999988887544322222 456666665 57765554467899999999999999
Q ss_pred EcCCHHHHHHHHHHHHHHHHhhcc
Q psy17028 296 KPKNGKNAEQWVQCLSVVVAHSQA 319 (334)
Q Consensus 296 ~AdS~ee~~eWI~AI~~aIa~~~~ 319 (334)
+|+|+.+.++||.+|+..|.....
T Consensus 350 QAes~~d~~~Wi~~i~nsi~s~l~ 373 (785)
T KOG0521|consen 350 QAESEKDCQDWISALQNSILSALN 373 (785)
T ss_pred ecCchhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999875443
No 47
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.63 E-value=1.3e-07 Score=79.31 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=60.6
Q ss_pred EEEEeccccCCCcccCCceeEEEEEeCCeeEEecCCC-CCc---cceEEcCCeeEEEecCCC----CCCCceEEEEeCC-
Q psy17028 220 IEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKE-DKQ---ETPIDVHRIRSVKVSRGA----RNIPKAFEIFTGD- 290 (334)
Q Consensus 220 keGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~~~-~~p---~g~I~L~~~~sV~~~~~~----~~k~~~F~I~T~~- 290 (334)
.||+|+-|.-+. |.||||||+|+.+.|+|..... ..+ ....++.+.-........ ...+++|.|..+.
T Consensus 2 ~~g~LylK~~gk---KsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~ 78 (114)
T cd01259 2 MEGPLYLKADGK---KSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD 78 (114)
T ss_pred ccceEEEccCCC---ccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence 589998886333 8999999999999999865322 222 223334333111111111 1346889986543
Q ss_pred -----e-EEEEEcCCHHHHHHHHHHHHHHH
Q psy17028 291 -----D-SLILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 291 -----R-Ty~L~AdS~ee~~eWI~AI~~aI 314 (334)
+ .-+|+|+|++.++.||.||+.+.
T Consensus 79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 1 47899999999999999999764
No 48
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.58 E-value=4.3e-07 Score=76.43 Aligned_cols=96 Identities=20% Similarity=0.281 Sum_probs=69.1
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCCeeEE-ecCCC-----------CCccceEEcCCeeEEEecCCCCCCCceE
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKE-----------DKQETPIDVHRIRSVKVSRGARNIPKAF 284 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Y-k~~~~-----------~~p~g~I~L~~~~sV~~~~~~~~k~~~F 284 (334)
.-++||-| .|-+.. .+.++.|+|-|=++.|.| |.... =...+.|+|..+..+...+. ...+++|
T Consensus 3 elI~EG~L-~ki~~~--~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~-~~~knaF 78 (112)
T cd01261 3 EFIMEGTL-TRVGPS--KKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDS-SEYKNAF 78 (112)
T ss_pred cccccCcE-EEEecc--cCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCC-cccCceE
Confidence 34778888 444322 266899999999999986 43221 11345688887654444332 2357899
Q ss_pred EEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q psy17028 285 EIFTG-DDSLILKPKNGKNAEQWVQCLSVVVAH 316 (334)
Q Consensus 285 ~I~T~-~RTy~L~AdS~ee~~eWI~AI~~aIa~ 316 (334)
.|.+. .++|.|+|.|++|.++||++|..++..
T Consensus 79 ~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 79 EIILKDGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred EEEcCCCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 99985 688999999999999999999988754
No 49
>KOG3640|consensus
Probab=98.50 E-value=2e-07 Score=100.03 Aligned_cols=99 Identities=18% Similarity=0.341 Sum_probs=73.1
Q ss_pred CceEEEEeccc-cCCCcccCCceeEEEEEeCCeeEE-ec---CCCCCccceEEcCCeeEEEe--cC-CCCCCCceEEEEe
Q psy17028 217 HPVIEGQLKEK-KGRWKIFKRWRTRYFTLSGAHLSY-KG---SKEDKQETPIDVHRIRSVKV--SR-GARNIPKAFEIFT 288 (334)
Q Consensus 217 ~vlkeGwLkkK-~G~~~~~K~WKrRwFVL~~~~L~Y-k~---~~~~~p~g~I~L~~~~sV~~--~~-~~~~k~~~F~I~T 288 (334)
.+-..|+|..= .|. .++.|+||||+|.++.+.| |. ++.+.|.|.|||+.|++-++ .. +-..+++.|.|.+
T Consensus 989 dVEYrGFLtmfed~s--gfGaWhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~ 1066 (1116)
T KOG3640|consen 989 DVEYRGFLTMFEDGS--GFGAWHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEV 1066 (1116)
T ss_pred ceeeeeeeeeeeccC--CCchhhhhhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeEEEe
Confidence 46677988332 222 2688999999999999974 33 33445999999999986543 22 2246788999982
Q ss_pred -------------CCe-EEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy17028 289 -------------GDD-SLILKPKNGKNAEQWVQCLSVVVAHS 317 (334)
Q Consensus 289 -------------~~R-Ty~L~AdS~ee~~eWI~AI~~aIa~~ 317 (334)
..| -..|.||+.++++.|+++|+.++.+.
T Consensus 1067 ~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~L 1109 (1116)
T KOG3640|consen 1067 WRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQL 1109 (1116)
T ss_pred ecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHHH
Confidence 113 47899999999999999999988763
No 50
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=98.42 E-value=5.7e-07 Score=91.15 Aligned_cols=95 Identities=17% Similarity=0.352 Sum_probs=65.9
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCCeeE--EecCCC--CCccceEEcCCeeEEEecC--CCCCCCceEEEEe-C
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS--YKGSKE--DKQETPIDVHRIRSVKVSR--GARNIPKAFEIFT-G 289 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~--Yk~~~~--~~p~g~I~L~~~~sV~~~~--~~~~k~~~F~I~T-~ 289 (334)
.+..+||+ .|.+.. + .|++|||.+.++.+. |+..++ ......+.+..+..|.+.. ...+++++|.|.| .
T Consensus 376 Dv~~~G~l-~k~~~~--~-~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~ 451 (478)
T PTZ00267 376 DVTHGGYL-YKYSSD--M-RWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVLWFNN 451 (478)
T ss_pred CcccceEE-eccCCC--c-chhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHHhcCCCCceEEEEecC
Confidence 57889999 666654 3 499999999998885 553322 2222344444444443221 1235688999977 4
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHH
Q psy17028 290 DDSLILKPKNGKNAEQWVQCLSVVVA 315 (334)
Q Consensus 290 ~RTy~L~AdS~ee~~eWI~AI~~aIa 315 (334)
.+.++|.|+|++++++||.+|+.++.
T Consensus 452 ~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 452 GQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred CcEEEEecCChHHHHHHHHHHHHHhC
Confidence 57899999999999999999999863
No 51
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=98.39 E-value=3.7e-07 Score=76.24 Aligned_cols=100 Identities=23% Similarity=0.387 Sum_probs=73.2
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCCeeEEecCCCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCC-eEEEE
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGD-DSLIL 295 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~-RTy~L 295 (334)
..+..|+++|=+|.+ +..|++|||.|.+|.|-++.+..+.....|.+.++..|.+.....+..+|..|...+ +.++|
T Consensus 2 DcIvhGyi~KLGGPF--ls~WQ~Ry~~LfPNRLE~~~~~~~~~~eLi~M~~i~~V~~e~~~iK~~~CI~ik~k~~~k~vl 79 (116)
T cd01240 2 DCIVHGYIKKLGGPF--LSQWQTRYFKLYPNRLELYGESEANKPELITMDQIEDVSVEFQQIKEENCILLKIRDEKKIVL 79 (116)
T ss_pred ceEEeeehhhhCCHH--HHHHHHHHheeCcceeeecccccccCCcEEEeehhhhcchhheeeccCceEEEEEcCCceEEE
Confidence 468899994445554 899999999999999974443333444677777777665321111335788887766 56999
Q ss_pred EcCCHHHHHHHHHHHHHHHHhhc
Q psy17028 296 KPKNGKNAEQWVQCLSVVVAHSQ 318 (334)
Q Consensus 296 ~AdS~ee~~eWI~AI~~aIa~~~ 318 (334)
.++|+-+..+|...|+.+-..+|
T Consensus 80 t~~d~i~l~qW~~elr~a~r~Sq 102 (116)
T cd01240 80 TNSDEIELKQWKKELRDAHRESQ 102 (116)
T ss_pred ecCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876543
No 52
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.32 E-value=2.8e-06 Score=71.15 Aligned_cols=91 Identities=23% Similarity=0.384 Sum_probs=66.1
Q ss_pred EEeccc-cCCCcccCCceeEEEEEeCCeeE-EecCCC-----CCccceEEcC--CeeEEEecCCCC---CCCceEEEEeC
Q psy17028 222 GQLKEK-KGRWKIFKRWRTRYFTLSGAHLS-YKGSKE-----DKQETPIDVH--RIRSVKVSRGAR---NIPKAFEIFTG 289 (334)
Q Consensus 222 GwLkkK-~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~-----~~p~g~I~L~--~~~sV~~~~~~~---~k~~~F~I~T~ 289 (334)
||+-++ .|.--..++||.||++|++..|+ |+..+- ..|....+|- ..+.+....... +++++|.|.|+
T Consensus 3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg 82 (108)
T cd01258 3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTG 82 (108)
T ss_pred eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcC
Confidence 888555 22110258999999999999987 877442 2467777776 333344333333 67899999999
Q ss_pred Ce--EEEEEcCCHHHHHHHHHHHHH
Q psy17028 290 DD--SLILKPKNGKNAEQWVQCLSV 312 (334)
Q Consensus 290 ~R--Ty~L~AdS~ee~~eWI~AI~~ 312 (334)
.+ +.+|..++..|+..|..||+.
T Consensus 83 ~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 83 TQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CceeeEEEEecCHHHHHHHHHHHhc
Confidence 84 899999999999999999974
No 53
>KOG0248|consensus
Probab=98.29 E-value=5.3e-07 Score=94.36 Aligned_cols=114 Identities=17% Similarity=0.380 Sum_probs=88.6
Q ss_pred ccccCCC-CceEEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCC--CCCccceEEcCCeeEEEecCCCCCCCceEE
Q psy17028 210 VGFLQDS-HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSK--EDKQETPIDVHRIRSVKVSRGARNIPKAFE 285 (334)
Q Consensus 210 ~~~~~~g-~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~--~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~ 285 (334)
++..+++ .--++|++ +|-+.. +|.|||||||++++++. |+... ...|.+.||+.+.+.+... +-...|+
T Consensus 240 tsys~~~e~~ekSgy~-~~~~s~--~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~----~~s~~fq 312 (936)
T KOG0248|consen 240 TSLIPSRETMEKSGYW-TQLTSR--IKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQ----GAAYAFQ 312 (936)
T ss_pred ccccCCcchhhcccch-hcchHH--HHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeecc----chhHHhh
Confidence 3444454 34577888 555544 79999999999999997 65532 3468999999987655432 2346899
Q ss_pred EEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhccccCCCCCCCcc
Q psy17028 286 IFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMPTRGSSLV 330 (334)
Q Consensus 286 I~T~~RTy~L~AdS~ee~~eWI~AI~~aIa~~~~ke~~~R~~~l~ 330 (334)
+++...+|+|.++++--..+|+..|+.+|.-.+.+++..+.++++
T Consensus 313 li~~t~~~~~~~~s~~lt~dw~~iL~~~iKv~~~~~~a~~~~p~~ 357 (936)
T KOG0248|consen 313 LITSTDKMNFMTESERTTHDWVTILSAAIKATTLREMASRVTPID 357 (936)
T ss_pred hhhhceeEEEeccChhhhhhhHHHHHHHHHHHhccchhhhcCCCC
Confidence 999999999999999999999999999998877888877766654
No 54
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.05 E-value=5.1e-05 Score=62.34 Aligned_cols=89 Identities=20% Similarity=0.313 Sum_probs=62.9
Q ss_pred CCceEEEEeccccCCCcccCCceeEEEEEeCCeeEEecCCCC--CccceEEcCCeeEEEecCCCCCCCceEEEEeCC---
Q psy17028 216 SHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKED--KQETPIDVHRIRSVKVSRGARNIPKAFEIFTGD--- 290 (334)
Q Consensus 216 g~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~~~~--~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~--- 290 (334)
|+-++||.+. -.+. =+.|+.-|=+..|.|-+..+. .-+..|.++....++..+ +.|++|.|...+
T Consensus 2 geLlleg~l~-~~~~------~~eR~vFLFe~~ll~~K~~~~~y~~K~~i~~~~l~i~e~~~---~d~~~F~v~~~~~p~ 71 (97)
T cd01222 2 GDLLLEGRFR-EHGG------GKPRLLFLFQTMLLIAKPRGDKYQFKAYIPCKNLMLVEHLP---GEPLCFRVIPFDDPK 71 (97)
T ss_pred CceeeeceEE-eecC------CCceEEEEecccEEEEEecCCeeEEEEEEEecceEEecCCC---CCCcEEEEEecCCCc
Confidence 4568889883 2222 256888887777776443322 355678877765444322 337999996654
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHHH
Q psy17028 291 DSLILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 291 RTy~L~AdS~ee~~eWI~AI~~aI 314 (334)
++|.|+|.|.++.+.|+++|+.+|
T Consensus 72 ~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 72 GALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred eEEEEEecCHHHHHHHHHHHHHHh
Confidence 699999999999999999999886
No 55
>KOG3751|consensus
Probab=98.00 E-value=1.4e-05 Score=81.95 Aligned_cols=99 Identities=23% Similarity=0.384 Sum_probs=65.1
Q ss_pred ccCCC-CceEEEEeccccCCCcccCCceeEEEEEeCCeeEEecC-CCCCccc---eEEcCCeeEEEecCC--C---CCCC
Q psy17028 212 FLQDS-HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGS-KEDKQET---PIDVHRIRSVKVSRG--A---RNIP 281 (334)
Q Consensus 212 ~~~~g-~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~-~~~~p~g---~I~L~~~~sV~~~~~--~---~~k~ 281 (334)
|+..+ .+-++|+|+.|.-+. |.|||-||+|+..+|+|... +.+.+.. .-++.+- .|=+..+ . ...+
T Consensus 310 Fl~s~~~pei~GfL~~K~dgk---KsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~s-nVYt~i~~rKkyksPTd 385 (622)
T KOG3751|consen 310 FLSSSSPPEIQGFLYLKEDGK---KSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSS-NVYTGIGGRKKYKSPTD 385 (622)
T ss_pred HHhcCCCccccceeeeccccc---ccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccC-ceEEeecchhccCCCCC
Confidence 44444 688999998887664 99999999999999998653 2222221 2223322 1211111 1 1235
Q ss_pred ceEEEEeCC-----e-EEEEEcCCHHHHHHHHHHHHHHH
Q psy17028 282 KAFEIFTGD-----D-SLILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 282 ~~F~I~T~~-----R-Ty~L~AdS~ee~~eWI~AI~~aI 314 (334)
++|.|.... | -=+|||+|+..+..|+.||+.+.
T Consensus 386 ~~f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 386 YGFCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred ceEEeeeccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 788886432 2 35799999999999999998763
No 56
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.96 E-value=9.4e-05 Score=62.81 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=59.6
Q ss_pred CCceeEEEEEeCCee--EEecC-CC-C----CccceEEcCCeeEEEecCCC-C-----CCCceEEEEeCCeEEEEEcCCH
Q psy17028 235 KRWRTRYFTLSGAHL--SYKGS-KE-D----KQETPIDVHRIRSVKVSRGA-R-----NIPKAFEIFTGDDSLILKPKNG 300 (334)
Q Consensus 235 K~WKrRwFVL~~~~L--~Yk~~-~~-~----~p~g~I~L~~~~sV~~~~~~-~-----~k~~~F~I~T~~RTy~L~AdS~ 300 (334)
+..++|||-|..+.. ++.+. +. + ...+.|.|.++..|...... . ...++|.|.|++|+.-|.|+|.
T Consensus 28 ~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~t~~R~L~l~a~s~ 107 (123)
T PF12814_consen 28 EKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIIIVTPDRSLDLTAPSR 107 (123)
T ss_pred CCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEEEcCCeEEEEEeCCH
Confidence 578999999998755 44442 21 1 13357888888887642111 1 1346889999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy17028 301 KNAEQWVQCLSVVVA 315 (334)
Q Consensus 301 ee~~eWI~AI~~aIa 315 (334)
++.+-|+++|+-.+.
T Consensus 108 ~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 108 ERHEIWFNALRYLLQ 122 (123)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998653
No 57
>PLN02866 phospholipase D
Probab=97.85 E-value=0.0001 Score=81.26 Aligned_cols=101 Identities=15% Similarity=0.241 Sum_probs=71.2
Q ss_pred CCceEEEEeccc-----cC-CCc--c---------cCCceeEEEEEeCCeeEEe-cCCCCCccceEEcCCe--------e
Q psy17028 216 SHPVIEGQLKEK-----KG-RWK--I---------FKRWRTRYFTLSGAHLSYK-GSKEDKQETPIDVHRI--------R 269 (334)
Q Consensus 216 g~vlkeGwLkkK-----~G-~~~--~---------~K~WKrRwFVL~~~~L~Yk-~~~~~~p~g~I~L~~~--------~ 269 (334)
|.-.+||++++| .| ..+ . --+|.||||+|+++.|.|- +..+.++...|-.+.. .
T Consensus 180 g~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~~v~lfD~~~~~~~~~~~ 259 (1068)
T PLN02866 180 GPKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKPLDIIVFDVLPASNGNGEG 259 (1068)
T ss_pred CCCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCceeEEEEEecccccccCCCc
Confidence 456889999666 22 111 0 1479999999999999875 4444556655544421 1
Q ss_pred EEEecCCC---CCCCceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q psy17028 270 SVKVSRGA---RNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAH 316 (334)
Q Consensus 270 sV~~~~~~---~~k~~~F~I~T~~RTy~L~AdS~ee~~eWI~AI~~aIa~ 316 (334)
.+.++.+. ....+.|.|.+.+|+..|.+.|...+.+|+.+|+.+..+
T Consensus 260 ~~~~~~~~k~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 260 QISLAKEIKERNPLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGLR 309 (1068)
T ss_pred ceeecccccccCCCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 22222221 244689999999999999999999999999999998644
No 58
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.71 E-value=0.00018 Score=76.77 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=67.8
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCC--CCCccceEEcCCeeEEEe-cCCCC-C-CCceEEEEeC-
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSK--EDKQETPIDVHRIRSVKV-SRGAR-N-IPKAFEIFTG- 289 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~--~~~p~g~I~L~~~~sV~~-~~~~~-~-k~~~F~I~T~- 289 (334)
.+.+||||..=+.+.-....-++|||||.++.|. ||..+ ...|..+..++..+.|+- +.... + .-+.|.|...
T Consensus 3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~ 82 (719)
T PLN00188 3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 82 (719)
T ss_pred cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEecCC
Confidence 5679999943332221124469999999999997 77643 234667777777666652 22111 1 1245555432
Q ss_pred --CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy17028 290 --DDSLILKPKNGKNAEQWVQCLSVVVAHS 317 (334)
Q Consensus 290 --~RTy~L~AdS~ee~~eWI~AI~~aIa~~ 317 (334)
++...|.|-|.+|+.+|++||+.|+.+.
T Consensus 83 ~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 83 EKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred CccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 3579999999999999999999999863
No 59
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.69 E-value=0.00039 Score=57.58 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=58.5
Q ss_pred eeEEEEEeCCeeEEec---CCCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy17028 238 RTRYFTLSGAHLSYKG---SKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 238 KrRwFVL~~~~L~Yk~---~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~L~AdS~ee~~eWI~AI~~aI 314 (334)
++..|-|=++.|.|-. .+.-.-..+++|.++..+.+.+.. .-+++|.|.|+.+++.++|+|+++..+|+..|+.+.
T Consensus 20 ~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~ni~D~~-~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 20 QRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVVNVKDRE-NAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred ceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEEecCCCc-CcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHh
Confidence 4565666677776433 221235678999998777765543 457899999999999999999999999999999986
No 60
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=97.66 E-value=0.00011 Score=75.20 Aligned_cols=96 Identities=17% Similarity=0.321 Sum_probs=60.3
Q ss_pred CCceEEEEeccccCCCcccCCceeEEEEEeCCeeE-Eec----C-------------CCCCccceE--EcCCeeEEEecC
Q psy17028 216 SHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKG----S-------------KEDKQETPI--DVHRIRSVKVSR 275 (334)
Q Consensus 216 g~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~----~-------------~~~~p~g~I--~L~~~~sV~~~~ 275 (334)
+..+.+|.+ +|++.. ..||+||+.+++.-.- +-. . ++......| +++..+.|-+..
T Consensus 371 ~~~~~~g~~-~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (496)
T PTZ00283 371 GLTLYEGIV-KKQSSD---LSWKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPVP 446 (496)
T ss_pred CceeeeeEE-ecccCC---cccceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhccccccc
Confidence 367899999 555543 4499999999853221 111 0 000011122 344444333211
Q ss_pred ---CCCCCCceEEEEe-CCeEEEEEcCCHHHHHHHHHHHHHHHH
Q psy17028 276 ---GARNIPKAFEIFT-GDDSLILKPKNGKNAEQWVQCLSVVVA 315 (334)
Q Consensus 276 ---~~~~k~~~F~I~T-~~RTy~L~AdS~ee~~eWI~AI~~aIa 315 (334)
...+.++.|.+.+ ++|.|.|+|.++++++.||.+||.++.
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 447 SKYTGSNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred HHhhCCCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 1124578999854 568999999999999999999999875
No 61
>KOG0932|consensus
Probab=97.45 E-value=8.6e-05 Score=76.89 Aligned_cols=99 Identities=22% Similarity=0.373 Sum_probs=70.0
Q ss_pred CceEEEEecccc-----CCC--cccCCceeEEEEEeCCeeEE-ecC-CCCCccceEEcCCeeEEE-----ecCCCCCCCc
Q psy17028 217 HPVIEGQLKEKK-----GRW--KIFKRWRTRYFTLSGAHLSY-KGS-KEDKQETPIDVHRIRSVK-----VSRGARNIPK 282 (334)
Q Consensus 217 ~vlkeGwLkkK~-----G~~--~~~K~WKrRwFVL~~~~L~Y-k~~-~~~~p~g~I~L~~~~sV~-----~~~~~~~k~~ 282 (334)
.+.+.|+|.+|- |+. +..+.||.-|-+|+|..|++ |++ +..+.+-.=+|....+|. ...+..++++
T Consensus 505 ~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt~AtdY~KKp~ 584 (774)
T KOG0932|consen 505 ATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALATPATDYSKKPH 584 (774)
T ss_pred hhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcCCCcccccCCc
Confidence 356889996662 221 11367999999999999985 443 222333333454444443 2345567899
Q ss_pred eEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHH
Q psy17028 283 AFEIFTGD-DSLILKPKNGKNAEQWVQCLSVVVA 315 (334)
Q Consensus 283 ~F~I~T~~-RTy~L~AdS~ee~~eWI~AI~~aIa 315 (334)
.|.+.|.+ |.|.|+|.+.+||+.||..|+-|.+
T Consensus 585 Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA 618 (774)
T KOG0932|consen 585 VFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA 618 (774)
T ss_pred eEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999 7999999999999999999998755
No 62
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.44 E-value=0.0018 Score=54.44 Aligned_cols=90 Identities=18% Similarity=0.435 Sum_probs=64.5
Q ss_pred eEEEEeccccCCCcccCCc-eeEEEEEeCCeeEE-ecC--CCC--CccceEEcCCeeEEEecCCCC-----CCCceEEEE
Q psy17028 219 VIEGQLKEKKGRWKIFKRW-RTRYFTLSGAHLSY-KGS--KED--KQETPIDVHRIRSVKVSRGAR-----NIPKAFEIF 287 (334)
Q Consensus 219 lkeGwLkkK~G~~~~~K~W-KrRwFVL~~~~L~Y-k~~--~~~--~p~g~I~L~~~~sV~~~~~~~-----~k~~~F~I~ 287 (334)
+.+|-| ++.+.. +.| +.|+|-|=++.|.| |.+ +.. .-+|.|+|+.+..+...++.. .-.++|.|.
T Consensus 3 i~~Gel-~~~s~~---~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~ 78 (109)
T cd01224 3 FLQGEA-TRQKQN---KGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY 78 (109)
T ss_pred eEeeeE-EEEecc---cCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence 567777 443321 222 67999999999984 643 111 257899999987776644421 236899998
Q ss_pred eCC--eEEEEEcCCHHHHHHHHHHHHH
Q psy17028 288 TGD--DSLILKPKNGKNAEQWVQCLSV 312 (334)
Q Consensus 288 T~~--RTy~L~AdS~ee~~eWI~AI~~ 312 (334)
..+ ..|.|+|.|+++..+|++|+..
T Consensus 79 ~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 79 SESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 766 5799999999999999999864
No 63
>KOG1117|consensus
Probab=97.26 E-value=0.00018 Score=77.41 Aligned_cols=93 Identities=20% Similarity=0.312 Sum_probs=72.4
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCCeeEEecC-CCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEEE
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGS-KEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLIL 295 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~-~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~L 295 (334)
.+++.|||.|-...+ -.-..+||..+.+..+.|.++ ++.-..|.|++..+..|.. ...+-|++.|.+|+|.|
T Consensus 86 p~~~~gwldk~~pqg--~~~~qkr~vkf~~~s~~yf~~~k~py~k~~i~va~is~v~~-----~gd~kfevitn~r~fvf 158 (1186)
T KOG1117|consen 86 PVIKSGWLDKLSPQG--EYPFQKRWVKFDGSSLEYFLSPKDPYSKGPIPVAAISAVRN-----FGDNKFEVITNQRTFVF 158 (1186)
T ss_pred chhhcchhhccCcCc--ccccCccceecCCCCccccCCCCCCCCCCceeeehhhhhhh-----ccCceEEEEecceEEEE
Confidence 378999994322222 233689999999999997774 4445778999988766643 12357999999999999
Q ss_pred EcCCHHHHHHHHHHHHHHHHh
Q psy17028 296 KPKNGKNAEQWVQCLSVVVAH 316 (334)
Q Consensus 296 ~AdS~ee~~eWI~AI~~aIa~ 316 (334)
.++++.++..|++.+++++..
T Consensus 159 r~e~~~~r~~w~s~l~s~~~~ 179 (1186)
T KOG1117|consen 159 RQESEGERFIWVSPLQSALKE 179 (1186)
T ss_pred ecCCcccceeeechhhhcchh
Confidence 999999999999999998754
No 64
>KOG1739|consensus
Probab=97.24 E-value=0.00035 Score=71.40 Aligned_cols=91 Identities=22% Similarity=0.370 Sum_probs=66.2
Q ss_pred ceEEEEeccccCCCcccCCceeEEEEEeCCeeEE-ecC--CCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEE
Q psy17028 218 PVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGS--KEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLI 294 (334)
Q Consensus 218 vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Y-k~~--~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~ 294 (334)
+-..|+| .|--.+ +..|.-|||+|+.+.|.| +.+ .+-...|.|-|+... +..-+ ...+.|.|.+.....+
T Consensus 24 ~e~~G~l-skwtny--i~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~-i~ahE---fDe~rfdIsvn~nv~~ 96 (611)
T KOG1739|consen 24 VERCGVL-SKWTNY--IHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAV-ITAHE---FDECRFDISVNDNVWY 96 (611)
T ss_pred hhhccee-eeeecc--cccccceEEEEcccchhhhhhhhhhhcccceeeEeccCC-ccccc---chhheeeeEeccceee
Confidence 3344555 333333 567999999999999985 443 223478899987753 21111 2357899999999999
Q ss_pred EEcCCHHHHHHHHHHHHHHHH
Q psy17028 295 LKPKNGKNAEQWVQCLSVVVA 315 (334)
Q Consensus 295 L~AdS~ee~~eWI~AI~~aIa 315 (334)
+.|.+.+..+.|+.+|...-.
T Consensus 97 lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 97 LRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred ehhcCcHHHHHHHHHHHHHhh
Confidence 999999999999999987654
No 65
>KOG3723|consensus
Probab=97.21 E-value=0.00059 Score=71.08 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=99.1
Q ss_pred HHHHHhhHHHHHhhccCch-hhHHHH-HHHHHHhhcCCchhhhchHHHHHhhhc--CchhHHHHHHHHHhhccCChhhHH
Q psy17028 13 YKLLEASLPQLCEYLATNS-TILATM-QIFLHLAEKRPQLLVDYVPKLKQANEG--NANTLCVTVQVVAAVGRLNKDKAQ 88 (334)
Q Consensus 13 ~~~l~~~vp~L~~~L~~~~-~~~~~l-~il~~ia~~~p~~l~~~l~~~k~~~~~--~p~~~~~~aki~gavG~~~~~~a~ 88 (334)
|+++-+++|.|..||..+. -..++| +..+=|.+..|..|..++|.|+-..+. +-...-++.|+++.+|++.---+-
T Consensus 194 P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~l~~~~ 273 (851)
T KOG3723|consen 194 PQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPVALNSFL 273 (851)
T ss_pred CCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCccchhhHH
Confidence 5667789999999998655 444444 445678999999999999999988764 456778899999999999887777
Q ss_pred HHHHHHHhhC----------------CCCcchhhhHHH---HHHHHhhccCCCcccccccceeecccc
Q psy17028 89 DALNFILAHL----------------PKADRSSQSVLL---REATLLCSTYPVLCTDKMLAEVWQCSR 137 (334)
Q Consensus 89 ~~L~~l~~~L----------------~~~d~~~~~~Ll---~Ei~~l~~~~p~ll~~~~~~~~r~~~~ 137 (334)
++|+-+++-- ...|.+.|++=+ +|+..+|+.||++|++++++++|+.||
T Consensus 274 E~l~e~~~~~p~~~~~~a~i~T~~g~~d~e~a~~~l~~l~~q~a~~~~s~~~~l~~eriLA~~~~~Ns 341 (851)
T KOG3723|consen 274 EMLKEIGERFPYLTGQMARIYTAVGHVDEERARSCLTYLVSQLANMEHSFHHILLLERILAITDTFNS 341 (851)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHhcccchhhhcchHHHHHHHHHHHHhcccHHHHHHHHHHHhCcccc
Confidence 7776665432 234556665533 899999999999999999999999999
No 66
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.12 E-value=0.0024 Score=53.79 Aligned_cols=76 Identities=21% Similarity=0.314 Sum_probs=58.2
Q ss_pred ceeEEEEEeCCeeE-EecCC--CC-CccceEEcCCeeEEEecCCCCCCCceEEEEeCC-eEEEEEcCCHHHHHHHHHHHH
Q psy17028 237 WRTRYFTLSGAHLS-YKGSK--ED-KQETPIDVHRIRSVKVSRGARNIPKAFEIFTGD-DSLILKPKNGKNAEQWVQCLS 311 (334)
Q Consensus 237 WKrRwFVL~~~~L~-Yk~~~--~~-~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~-RTy~L~AdS~ee~~eWI~AI~ 311 (334)
=+.||++|-++.|. ...++ .. .-.|.++|++++..++. +..+.+++|+|.-+. .+..+.+.+++|.++|+..|+
T Consensus 28 ~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lE-d~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~ 106 (111)
T cd01225 28 KRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLE-DTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLN 106 (111)
T ss_pred cceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechH-hccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHH
Confidence 37899999999997 44433 11 25689999998654443 333567899998666 688999999999999999998
Q ss_pred HH
Q psy17028 312 VV 313 (334)
Q Consensus 312 ~a 313 (334)
.-
T Consensus 107 ~~ 108 (111)
T cd01225 107 AN 108 (111)
T ss_pred hh
Confidence 74
No 67
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.06 E-value=0.0031 Score=52.47 Aligned_cols=74 Identities=26% Similarity=0.442 Sum_probs=53.1
Q ss_pred eeEEEEEeCCe--eEEecCCCCCccceEEcCCeeEEEecCCC-------------CCCCceEEEEeCC----eEEEEEcC
Q psy17028 238 RTRYFTLSGAH--LSYKGSKEDKQETPIDVHRIRSVKVSRGA-------------RNIPKAFEIFTGD----DSLILKPK 298 (334)
Q Consensus 238 KrRwFVL~~~~--L~Yk~~~~~~p~g~I~L~~~~sV~~~~~~-------------~~k~~~F~I~T~~----RTy~L~Ad 298 (334)
++|.|.|+.+. |+|+++. +...+.|+|+.+..|..+... ...+.+|.|+-.. ++..|.|+
T Consensus 22 ~~~~f~ld~~~~~l~W~~~~-~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~~~~k~L~lVA~ 100 (115)
T cd01248 22 RRRLFRLDEKGFFLYWKDEG-KKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTDLNLKSLDLVAP 100 (115)
T ss_pred eeEEEEEcCCCcEEEEeCCC-CccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCCCCeeEEEEEEC
Confidence 56889997643 3455543 225678999999888753211 1334789987554 48999999
Q ss_pred CHHHHHHHHHHHHH
Q psy17028 299 NGKNAEQWVQCLSV 312 (334)
Q Consensus 299 S~ee~~eWI~AI~~ 312 (334)
|.++++.|++.|+.
T Consensus 101 s~~~a~~W~~gL~~ 114 (115)
T cd01248 101 SEEEAKTWVSGLRK 114 (115)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999874
No 68
>KOG0705|consensus
Probab=97.06 E-value=0.00039 Score=72.37 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=36.5
Q ss_pred eEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHH-hhccccCCCCCCC
Q psy17028 283 AFEIFTGD-DSLILKPKNGKNAEQWVQCLSVVVA-HSQAKEMPTRGSS 328 (334)
Q Consensus 283 ~F~I~T~~-RTy~L~AdS~ee~~eWI~AI~~aIa-~~~~ke~~~R~~~ 328 (334)
+|+|+... .+++|.|.+.||++.||+||+.-|- ..|..|..+-.+.
T Consensus 447 ~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq~cessk~Ks~ 494 (749)
T KOG0705|consen 447 CFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQSCESSKSKSR 494 (749)
T ss_pred eEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHhhhhhhcchhc
Confidence 89988665 6999999999999999999998664 4477776554433
No 69
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.03 E-value=0.0095 Score=50.36 Aligned_cols=52 Identities=21% Similarity=0.546 Sum_probs=38.8
Q ss_pred ceEEcCCeeEEEecCCCCCCCceEEEEeCC-----eEEEEEcCCHHHHHHHHHHHHHHHH
Q psy17028 261 TPIDVHRIRSVKVSRGARNIPKAFEIFTGD-----DSLILKPKNGKNAEQWVQCLSVVVA 315 (334)
Q Consensus 261 g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~-----RTy~L~AdS~ee~~eWI~AI~~aIa 315 (334)
..|.++.+.-.+..++ .++.|+|...+ .+|.++|.|.++.+.|+..|+.++.
T Consensus 57 ~~ikls~l~l~e~v~g---d~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 57 SKLQVSKMGLTEHVEG---DPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred cceeeeeeEeEEccCC---CCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 6677776643333333 36778885443 5899999999999999999999875
No 70
>KOG4424|consensus
Probab=96.90 E-value=0.0015 Score=68.07 Aligned_cols=100 Identities=17% Similarity=0.294 Sum_probs=68.8
Q ss_pred ccCCC-CceEEEEeccccCCCcccCCceeEEEEEeCCeeEEecCCCCC------ccceEEcCCeeEEEecCCCCCCCceE
Q psy17028 212 FLQDS-HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDK------QETPIDVHRIRSVKVSRGARNIPKAF 284 (334)
Q Consensus 212 ~~~~g-~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~~~~~------p~g~I~L~~~~sV~~~~~~~~k~~~F 284 (334)
++.++ ..+|||-+ -|-... ..+-..||+.|=++.+.|-...-.. +.-.+.+..+... .++....++.|
T Consensus 265 IV~PsreLiKEG~l-~Kis~k--~~~~qeRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~--~~~~~~~~~tF 339 (623)
T KOG4424|consen 265 IVSPSRELIKEGQL-QKISAK--NGTTQERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQ--EDDNEELPHTF 339 (623)
T ss_pred ccCcHHHHhhccce-eeeecc--CCCcceeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhc--ccccccCCceE
Confidence 34555 67899999 443332 3667999999999988774322111 2233333333211 12222568899
Q ss_pred EEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q psy17028 285 EIFTGDDSLILKPKNGKNAEQWVQCLSVVVAH 316 (334)
Q Consensus 285 ~I~T~~RTy~L~AdS~ee~~eWI~AI~~aIa~ 316 (334)
.+..++|+..|+|.|+++.++||++|+.+|..
T Consensus 340 ~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 340 ILTGKKRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred EEecccceEEeecCchhhHHHHHHHHHHHHHH
Confidence 99888999999999999999999999999963
No 71
>PF15406 PH_6: Pleckstrin homology domain
Probab=96.89 E-value=0.0022 Score=53.88 Aligned_cols=65 Identities=12% Similarity=0.252 Sum_probs=49.6
Q ss_pred EEEeCCeeE-EecCC-CCCccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEEEEcCCHHHHHHHHHHHH
Q psy17028 242 FTLSGAHLS-YKGSK-EDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLS 311 (334)
Q Consensus 242 FVL~~~~L~-Yk~~~-~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~L~AdS~ee~~eWI~AI~ 311 (334)
=.=+|..|. |.+.. ...|.|.|+|.+++.+.. ++ .+-|.+...+....|+|.|..|++.||.+|.
T Consensus 44 AsqTGKGLLF~~K~~dka~P~GiinLadase~~~-~g----~~kF~f~~~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 44 ASQTGKGLLFFSKAEDKASPSGIINLADASEPEK-DG----SNKFHFKIKGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred hhccCceEEEEeccccccCCcceEehhhcccccc-CC----CceEEEEeCCceeeeecCCHHHhccHHHHhh
Confidence 345677776 65432 236999999999877644 22 3568887888899999999999999999986
No 72
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.89 E-value=0.0037 Score=53.74 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=44.6
Q ss_pred ceeEEEEEeCCeeEEecCCCCCccceEE---cCCeeEEEecCCC----------CCCCceEEEE------eCCeEEEEEc
Q psy17028 237 WRTRYFTLSGAHLSYKGSKEDKQETPID---VHRIRSVKVSRGA----------RNIPKAFEIF------TGDDSLILKP 297 (334)
Q Consensus 237 WKrRwFVL~~~~L~Yk~~~~~~p~g~I~---L~~~~sV~~~~~~----------~~k~~~F~I~------T~~RTy~L~A 297 (334)
-+.||+-|=++-|.|-+.+.+.--..+| .+.+ .|+..+.. ...++.|.|. -..+.+.|+|
T Consensus 27 ~~~vylfLFnDlLl~tkkK~~~~f~V~dy~~r~~l-~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~el~L~a 105 (125)
T cd01221 27 ARTIYLFLFNDLLLITKKKLGSTFVVFDYAPRSFL-RVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAELLLSA 105 (125)
T ss_pred CCcEEEEEecceEEEEEecCCCeEEEEeeccccce-EEeecccccccccccccccCCCceEEEEeeccCCCCEEEEEEEC
Confidence 3678999999998874322221111211 1111 12211110 1357899985 2224799999
Q ss_pred CCHHHHHHHHHHHH
Q psy17028 298 KNGKNAEQWVQCLS 311 (334)
Q Consensus 298 dS~ee~~eWI~AI~ 311 (334)
+|+.|+.+||+||.
T Consensus 106 ~S~sdr~rWi~Al~ 119 (125)
T cd01221 106 DSQSDRERWLSALA 119 (125)
T ss_pred CCHHHHHHHHHhcC
Confidence 99999999999984
No 73
>KOG3543|consensus
Probab=96.51 E-value=0.00069 Score=71.19 Aligned_cols=100 Identities=21% Similarity=0.391 Sum_probs=70.9
Q ss_pred CCCCceEEEEeccccCCCcccCCceeEEEEEeCCe---e--E-EecCCCCCccceEEcCCeeEEEe---cCCCCCCCceE
Q psy17028 214 QDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAH---L--S-YKGSKEDKQETPIDVHRIRSVKV---SRGARNIPKAF 284 (334)
Q Consensus 214 ~~g~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~---L--~-Yk~~~~~~p~g~I~L~~~~sV~~---~~~~~~k~~~F 284 (334)
++.+.-..|||+--+.+. .|.||+|||+|-.-. + + |+..+ ..|...|.|.+.+ |.- .++..+..+.|
T Consensus 460 kp~nmkhsgylyaig~nv--wkrwkkrffvlvqvsqytfamcsyrekk-aepqel~qldgyt-vdytdp~pglqgg~~ff 535 (1218)
T KOG3543|consen 460 KPPNMKHSGYLYAIGRNV--WKRWKKRFFVLVQVSQYTFAMCSYREKK-AEPQELIQLDGYT-VDYTDPSPGLQGGKHFF 535 (1218)
T ss_pred CCCccccceeehhhhhHH--HHHhHhhEEEEEEhhhhhhHhhhhhhcc-cChHHHhhccCee-eccCCCCCccccchHHH
Confidence 344566789995433332 499999999997542 2 3 55433 5677888888864 442 22333445678
Q ss_pred EEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy17028 285 EIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHS 317 (334)
Q Consensus 285 ~I~T~~RTy~L~AdS~ee~~eWI~AI~~aIa~~ 317 (334)
.-+-.+.+..|..|++.++.-|++|+-.|-.++
T Consensus 536 navkegdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 536 NAVKEGDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred HHhccCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 877788899999999999999999999987664
No 74
>KOG1451|consensus
Probab=96.49 E-value=0.0043 Score=64.94 Aligned_cols=138 Identities=13% Similarity=0.144 Sum_probs=86.7
Q ss_pred cCChhHHHHHHHHHhhcCccccccccccCCCCCCcceeeeccCCcccccccCCCCceEEEEeccccCCCcccCCceeEEE
Q psy17028 163 LIDAQDQEAVLNELRHSGFCDVFEYGVSGGGKEASWGCFLCNHPERAVGFLQDSHPVIEGQLKEKKGRWKIFKRWRTRYF 242 (334)
Q Consensus 163 f~~~~d~~~~~~~L~~~~~f~~f~~~~~~~g~~~~w~c~~c~~pe~a~~~~~~g~vlkeGwLkkK~G~~~~~K~WKrRwF 242 (334)
|...|||-++-.+=..++|-..=+-. ..-..-|-..|- .--.++...+||||+. |-++.+-+.|-+-||
T Consensus 220 F~pfk~qlq~s~QnTrn~f~~Tr~E~-------EeLkKkmke~p~---e~k~p~p~t~eGYlY~-QEK~~~g~sWvKyYC 288 (812)
T KOG1451|consen 220 FKPFKDQLQTSVQNTRNNFNATRAEA-------EELKKKMKESPT---EDKRPTPSTKEGYLYM-QEKSKIGKSWVKYYC 288 (812)
T ss_pred hhhHHHHHHHHHHHhhhcccchHHHH-------HHHHHHHhhCcc---cccCCCCcccceeeee-hhhhhccchhhhhee
Confidence 77778877655555555552211111 122333333332 2224567899999954 445545689999999
Q ss_pred EEeCCe--eE--EecC---CCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCCe--EEEEEcCCHHHHHHHHHHHHHH
Q psy17028 243 TLSGAH--LS--YKGS---KEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDD--SLILKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 243 VL~~~~--L~--Yk~~---~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~R--Ty~L~AdS~ee~~eWI~AI~~a 313 (334)
+..... +. =.+. .+..+..++-|..|..-+. +...+.+||.|.+.+| +..++|-|++++..||.|+..+
T Consensus 289 ~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRkt--dSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 289 VYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKT--DSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred EeecccceEEEeecccCCCCcCCCcceEEehhhccCcc--cccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 998653 22 1121 1223556677777643322 2235679999999987 7999999999999999998765
No 75
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.48 E-value=0.0087 Score=49.16 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=53.5
Q ss_pred ceEEEEeccc--cCCCcccCCceeEEEEEeCCeeE---EecCCCC-----CccceEEcCCeeEEEecCCCCCCCceEEE-
Q psy17028 218 PVIEGQLKEK--KGRWKIFKRWRTRYFTLSGAHLS---YKGSKED-----KQETPIDVHRIRSVKVSRGARNIPKAFEI- 286 (334)
Q Consensus 218 vlkeGwLkkK--~G~~~~~K~WKrRwFVL~~~~L~---Yk~~~~~-----~p~g~I~L~~~~sV~~~~~~~~k~~~F~I- 286 (334)
.+.+|.| .| +|.. |.|-|-|=++.|. |+..... +..-.|||.++.-..+ + |.+
T Consensus 3 Lv~eg~l-vel~~~~r------K~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-------~--~~~~ 66 (96)
T cd01228 3 LVKDSFL-VELVEGSR------KLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-------P--FRIH 66 (96)
T ss_pred cccccee-eeehhCCC------cceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch-------h--hhcc
Confidence 4678888 43 3332 6677777778775 5432111 2345788887642211 1 444
Q ss_pred EeCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy17028 287 FTGDDSLILKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 287 ~T~~RTy~L~AdS~ee~~eWI~AI~~a 313 (334)
.|+.++|.+.|.|..|+.+|+.+|+..
T Consensus 67 ~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 67 NKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred ccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 567899999999999999999999764
No 76
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.41 E-value=0.0012 Score=53.49 Aligned_cols=88 Identities=15% Similarity=0.262 Sum_probs=58.1
Q ss_pred EEEeccccCCCcccCCceeEEEEEeCCeeEEecCCCCCccceEEcCCee-EEEecCCCCCCC----ceEEE--EeCC-eE
Q psy17028 221 EGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIR-SVKVSRGARNIP----KAFEI--FTGD-DS 292 (334)
Q Consensus 221 eGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~~~~~p~g~I~L~~~~-sV~~~~~~~~k~----~~F~I--~T~~-RT 292 (334)
||||+.-.- ..-+|||.+|++..+.++.+++.+-..++.|+... ++........-+ ++|-| ..++ +-
T Consensus 1 EGYLY~~E~-----~si~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~~~ 75 (104)
T PF15408_consen 1 EGYLYRDED-----SSIQRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSRRH 75 (104)
T ss_pred CCeEEEecc-----chHHHHHHhhhhceeEEecccCCceeeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCcch
Confidence 578843221 12489999999999987777767777888887642 222222221112 34544 4455 45
Q ss_pred EEEEcCCHHHHHHHHHHHHHH
Q psy17028 293 LILKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 293 y~L~AdS~ee~~eWI~AI~~a 313 (334)
.-+-|+|.+-++.||+++++-
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~ 96 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSP 96 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcCh
Confidence 778899999999999999764
No 77
>KOG1117|consensus
Probab=96.19 E-value=0.014 Score=63.45 Aligned_cols=78 Identities=17% Similarity=0.339 Sum_probs=61.7
Q ss_pred CceeEEEEEeCCeeEE-ecCCCCCccceEEcCCeeEEEecCCC----CCCCceEEEEeCC-eEEEEEcCCHHHHHHHHHH
Q psy17028 236 RWRTRYFTLSGAHLSY-KGSKEDKQETPIDVHRIRSVKVSRGA----RNIPKAFEIFTGD-DSLILKPKNGKNAEQWVQC 309 (334)
Q Consensus 236 ~WKrRwFVL~~~~L~Y-k~~~~~~p~g~I~L~~~~sV~~~~~~----~~k~~~F~I~T~~-RTy~L~AdS~ee~~eWI~A 309 (334)
--.++||||-++-|+| .+++...|.|.|.+..+.-+-+...+ .+..+.|+|.++. |.|.|.+++.++...|..|
T Consensus 517 e~nr~wcVlg~g~ls~fen~~S~tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~a 596 (1186)
T KOG1117|consen 517 ETNRKWCVLGGGFLSYFENEKSTTPNGLININEIVCLAVHPPDTYPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEA 596 (1186)
T ss_pred cCCCceEEcCcchhhhhhhcCCCCCCceeeccceEEEeecCCCCCCCcCceeEEEEeecccceEEeecccHHHHHHHHHH
Confidence 3578999999999985 45677789999999987654432222 2456789998775 7999999999999999999
Q ss_pred HHHH
Q psy17028 310 LSVV 313 (334)
Q Consensus 310 I~~a 313 (334)
|-+.
T Consensus 597 iaKh 600 (1186)
T KOG1117|consen 597 IAKH 600 (1186)
T ss_pred HHHh
Confidence 8654
No 78
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.17 E-value=0.033 Score=47.34 Aligned_cols=97 Identities=12% Similarity=0.233 Sum_probs=58.8
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCCCC------CccceEEcCCeeEEEec--CCC---CCCCceE
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKED------KQETPIDVHRIRSVKVS--RGA---RNIPKAF 284 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~~------~p~g~I~L~~~~sV~~~--~~~---~~k~~~F 284 (334)
.+...|-|+.|.-.. +.=+.||.-|-+..+. .|...+. .-+..+.|......... +.+ +.-.++|
T Consensus 3 R~~~DGelk~k~~~~---~k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f 79 (116)
T cd01223 3 RPLLDGEVRIKASED---QKTKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGF 79 (116)
T ss_pred ccccCCceEEeEecc---CCCceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEE
Confidence 344555555554321 2236787777776665 6643221 12345556654332211 111 1235789
Q ss_pred EEEeCC--eEEEEEcCCHHHHHHHHHHHHHHHHh
Q psy17028 285 EIFTGD--DSLILKPKNGKNAEQWVQCLSVVVAH 316 (334)
Q Consensus 285 ~I~T~~--RTy~L~AdS~ee~~eWI~AI~~aIa~ 316 (334)
.|...+ ..|.|.|.|+++.+.|+.+|..|+..
T Consensus 80 ~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 80 YLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred EEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 887766 36999999999999999999988754
No 79
>KOG3531|consensus
Probab=96.08 E-value=0.0018 Score=69.89 Aligned_cols=93 Identities=11% Similarity=0.197 Sum_probs=73.2
Q ss_pred eEEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCCCCCccceEEcCCeeEEEecC-CCCCCCceEEEEeCCeEEEEE
Q psy17028 219 VIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKEDKQETPIDVHRIRSVKVSR-GARNIPKAFEIFTGDDSLILK 296 (334)
Q Consensus 219 lkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~~~p~g~I~L~~~~sV~~~~-~~~~k~~~F~I~T~~RTy~L~ 296 (334)
...|+|..|=-.. ..|.|-|.|.+.-.|+ ||..+|+.+.-+.+|-+.+.-.+.. +...+.+.|.+.-.+-.|+|.
T Consensus 925 qLsg~Llrkfkns---sgwqkLwvvft~fcl~fyKS~qD~~~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffr 1001 (1036)
T KOG3531|consen 925 QLSGYLLRKFKNS---SGWQKLWVVFTNFCLFFYKSHQDSEPLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFR 1001 (1036)
T ss_pred hhhHHHHHHhhcc---ccceeeeeeecceeeEeecccccccccccccccccccCCCCCCCCcchhheeeeehhhhHHHHh
Confidence 4678885543332 4699999999999997 8888888899999988753222222 223567899999999999999
Q ss_pred cCCHHHHHHHHHHHHHHH
Q psy17028 297 PKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 297 AdS~ee~~eWI~AI~~aI 314 (334)
|++.-.-++|+..|+.+-
T Consensus 1002 aes~yt~~rw~evi~~a~ 1019 (1036)
T KOG3531|consen 1002 AESYYTFERWMEVITDAP 1019 (1036)
T ss_pred hhhhhhhhhHHHHhhcCC
Confidence 999999999999999863
No 80
>KOG4236|consensus
Probab=96.07 E-value=0.0049 Score=64.48 Aligned_cols=95 Identities=18% Similarity=0.297 Sum_probs=68.3
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCCCCCccceEEcCCeeEEEecC-----CCCCCCceEEEEeCC
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKEDKQETPIDVHRIRSVKVSR-----GARNIPKAFEIFTGD 290 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~~~p~g~I~L~~~~sV~~~~-----~~~~k~~~F~I~T~~ 290 (334)
..++|||+..-..+- ..=||-|..|+.+.+. |.++....-...|+|+.+.+|+... .+...|+||+|.|..
T Consensus 412 t~~kEGWmvHyt~~d---~lRkrHYWrldsk~itlfqn~s~~ryYkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~ 488 (888)
T KOG4236|consen 412 TKLKEGWMVHYTSKD---NLRKRHYWRLDSKCITLFQNESTNRYYKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTAT 488 (888)
T ss_pred hhhhcceEEEEechh---hhhhhhhheeccceeEeeecCCCceeEEeecHHHhheeeccCCcccCCCCCCCceEEEEeee
Confidence 468899982211110 1126667789999997 8887777788999999998887543 223458999999998
Q ss_pred eEEEEEcCC------------HHHHHHHHHHHHHHHH
Q psy17028 291 DSLILKPKN------------GKNAEQWVQCLSVVVA 315 (334)
Q Consensus 291 RTy~L~AdS------------~ee~~eWI~AI~~aIa 315 (334)
+.||..++ .+-++.|-.||+.++-
T Consensus 489 -~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alM 524 (888)
T KOG4236|consen 489 -TVYFVGENPSSTPGGESGVGLDAAQGWETAIQQALM 524 (888)
T ss_pred -EEEEecCCCCCCccccccccchhhccCchhhhhccc
Confidence 44455555 4558999999998864
No 81
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=95.61 E-value=0.036 Score=46.13 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=51.8
Q ss_pred CCceeEEEEEeC----CeeE-Eec--CCCCCccceEEcCCeeEEEecC--CCCCCCceEEEEeCCe-EEEEEcCCHHHHH
Q psy17028 235 KRWRTRYFTLSG----AHLS-YKG--SKEDKQETPIDVHRIRSVKVSR--GARNIPKAFEIFTGDD-SLILKPKNGKNAE 304 (334)
Q Consensus 235 K~WKrRwFVL~~----~~L~-Yk~--~~~~~p~g~I~L~~~~sV~~~~--~~~~k~~~F~I~T~~R-Ty~L~AdS~ee~~ 304 (334)
..|.|.=.+|+. ..|. |.- .+..+|+-.|....++.|.... +-..+.+.|.+...+. .|+|.|.|.++++
T Consensus 19 ~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~ 98 (107)
T cd01231 19 ARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQLN 98 (107)
T ss_pred cccceeeEEEEecCCCceEEEEccCCCCCCCCccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHHHHH
Confidence 347665556652 2233 443 4556777777766665554211 1113468999987776 6999999999999
Q ss_pred HHHHHHHH
Q psy17028 305 QWVQCLSV 312 (334)
Q Consensus 305 eWI~AI~~ 312 (334)
.|+..|+.
T Consensus 99 SWla~Ir~ 106 (107)
T cd01231 99 SWLAELRY 106 (107)
T ss_pred HHHHHHhc
Confidence 99999975
No 82
>KOG0248|consensus
Probab=95.53 E-value=0.0074 Score=64.17 Aligned_cols=88 Identities=9% Similarity=-0.091 Sum_probs=64.8
Q ss_pred eEEEEeccccCCCcccCCceeEEEEEeCCeeEEecCCCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEEEEcC
Q psy17028 219 VIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKPK 298 (334)
Q Consensus 219 lkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~L~Ad 298 (334)
-+.|+|++.-+. +|+|++|||++.++.+.|...+.+.+.+.|.+.+..++.-.... -.-+..+...+|++.+|
T Consensus 260 s~~k~lkrr~~v---~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~~~s~~fqli~----~t~~~~~~~~s~~lt~d 332 (936)
T KOG0248|consen 260 SRIKSLKRRYVV---FKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQGAAYAFQLIT----STDKMNFMTESERTTHD 332 (936)
T ss_pred HHHHHHHhHhee---eccceEEEEEcCCCccccccCcccccccceeeccchhHHhhhhh----hceeEEEeccChhhhhh
Confidence 455788443443 69999999999999998666555778899998876555321111 12234455679999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy17028 299 NGKNAEQWVQCLSVV 313 (334)
Q Consensus 299 S~ee~~eWI~AI~~a 313 (334)
...-.++||++.+..
T Consensus 333 w~~iL~~~iKv~~~~ 347 (936)
T KOG0248|consen 333 WVTILSAAIKATTLR 347 (936)
T ss_pred hHHHHHHHHHHHhcc
Confidence 999999999999875
No 83
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.38 E-value=0.13 Score=44.70 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=32.6
Q ss_pred CCCceEEEEeCCe--EEEEEcCCHHHHHHHHHHHHHHHHh
Q psy17028 279 NIPKAFEIFTGDD--SLILKPKNGKNAEQWVQCLSVVVAH 316 (334)
Q Consensus 279 ~k~~~F~I~T~~R--Ty~L~AdS~ee~~eWI~AI~~aIa~ 316 (334)
+.++.|+|.+.++ +|.++|.|.+..+.|++.|+.++.+
T Consensus 78 gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~ 117 (133)
T cd01227 78 GDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTS 117 (133)
T ss_pred CCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 3468899987764 8999999999999999999998753
No 84
>PF15404 PH_4: Pleckstrin homology domain
Probab=95.14 E-value=0.13 Score=47.10 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=33.7
Q ss_pred EEEEeccccCCCcccCCceeEEEEEeCCeeE-EecC---CCC--------CccceEEcCCee
Q psy17028 220 IEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGS---KED--------KQETPIDVHRIR 269 (334)
Q Consensus 220 keGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~---~~~--------~p~g~I~L~~~~ 269 (334)
++|.|..|.++. ..|+++|+||.++.|. |... ... .-..+|+|.+|=
T Consensus 1 ~sG~LY~K~~kh---s~F~~~~vvL~~G~Li~f~~~~Rs~tG~~~~~~~~~~~~tI~L~dcY 59 (185)
T PF15404_consen 1 MSGYLYQKPRKH---STFKKYFVVLIPGFLILFQLFKRSRTGFAKPTVHYEHYLTIPLRDCY 59 (185)
T ss_pred CCceeeecCCCC---CCceEEEEEEeCCEEEEEEEEeeccCCcccceEEeEeeeeeccCCce
Confidence 469998898876 7789999999999986 6541 111 123578877763
No 85
>KOG0592|consensus
Probab=94.22 E-value=0.069 Score=55.96 Aligned_cols=86 Identities=21% Similarity=0.307 Sum_probs=66.7
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCC-eeEEecCCCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEEE
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGA-HLSYKGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLIL 295 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~-~L~Yk~~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~L 295 (334)
.++++|.|.+++|-+ =++|.|.|+.+ .+.|.+.......|.|+++.+..++... ...|-|.||+++|+|
T Consensus 450 ~i~k~~~l~k~~~lf-----~rkr~lllTn~~rll~~~~~~~~lk~eip~~~~~~~e~~n-----~~~~~i~TP~k~~~l 519 (604)
T KOG0592|consen 450 LILKEGALEKRQGLF-----ARKRMLLLTNGPRLLYVDPQNLVLKGEIPWSPDLRVELKN-----SSTFFIHTPNKVYYL 519 (604)
T ss_pred hHHhHHHHHhhhhhh-----hceeEEEecCCCeEEEEecccceeccccccCcccceeecc-----CcceEEECCccceec
Confidence 467888886666654 37899999976 4568887766788999999876665532 357999999999998
Q ss_pred EcCCHHHHHHHHHHHHHH
Q psy17028 296 KPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 296 ~AdS~ee~~eWI~AI~~a 313 (334)
.- =+..+..|-.+|..+
T Consensus 520 ~d-~~~~as~w~~ai~~~ 536 (604)
T KOG0592|consen 520 ED-PEQRASVWCKAIETV 536 (604)
T ss_pred cC-cccchhHHHHhhhhh
Confidence 75 456788999999988
No 86
>KOG1737|consensus
Probab=92.95 E-value=0.064 Score=58.50 Aligned_cols=86 Identities=19% Similarity=0.265 Sum_probs=57.6
Q ss_pred eEEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCC--CCCccceEEcCCeeEEEecCCCCCCCceEEEE-eCCeEEE
Q psy17028 219 VIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSK--EDKQETPIDVHRIRSVKVSRGARNIPKAFEIF-TGDDSLI 294 (334)
Q Consensus 219 lkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~--~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~-T~~RTy~ 294 (334)
-.+|||.+..+. .+.|.+|||+|.++.+. |++.. ...+.|.|++.... +. .+ ....+.+. -..++|+
T Consensus 78 ~~~g~l~k~~n~---~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~-i~--~~---~~~~~~~~~~~~q~~~ 148 (799)
T KOG1737|consen 78 SLEGILLKWRNY---SKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAW-IQ--NG---ERMDICSVDGSCQIYL 148 (799)
T ss_pred cccceeeccccc---cCCcccceEEecCcceeeeccCCccccCCCCcccccccc-cc--cC---CCcccchhhcccchhh
Confidence 467999555554 59999999999966666 44533 23467778775431 11 11 11123322 2257899
Q ss_pred EEcCCHHHHHHHHHHHHHH
Q psy17028 295 LKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 295 L~AdS~ee~~eWI~AI~~a 313 (334)
..+-+..+...|+.+++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 149 VELSKKLQRQGWLHALELA 167 (799)
T ss_pred hhhhHHHhhcchhhhhhhc
Confidence 9999999999999999876
No 87
>KOG4807|consensus
Probab=92.77 E-value=0.0016 Score=65.32 Aligned_cols=78 Identities=24% Similarity=0.460 Sum_probs=62.7
Q ss_pred CCceeEEEEEeCCeeE-EecCC---CCCccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEEEEcCCHHHHHHHHHHH
Q psy17028 235 KRWRTRYFTLSGAHLS-YKGSK---EDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCL 310 (334)
Q Consensus 235 K~WKrRwFVL~~~~L~-Yk~~~---~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~L~AdS~ee~~eWI~AI 310 (334)
-.|++-||++++..+. |.++. .+...|.|+|.+|+.|... ...+.+.|.|.|.+..|.|.|-+.--...||.|+
T Consensus 33 ~~~~k~~~~~~~~~~~~~~d~~A~~~~~L~~~~~LR~C~~v~e~--a~q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A~ 110 (593)
T KOG4807|consen 33 SQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEY--AVQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEAL 110 (593)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcccCCccccHHHHHHHHHH--HHHhccceeecccchhhhhHHHHHHHHHHHHHHH
Confidence 3499999999999996 66642 2356799999999765311 1245689999999999999999999999999999
Q ss_pred HHHH
Q psy17028 311 SVVV 314 (334)
Q Consensus 311 ~~aI 314 (334)
+..+
T Consensus 111 ~kT~ 114 (593)
T KOG4807|consen 111 RKTV 114 (593)
T ss_pred Hhcc
Confidence 8654
No 88
>KOG1738|consensus
Probab=89.85 E-value=0.047 Score=57.70 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=46.6
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCCCCCccceEEcCCeeEEEecCCCCCCCceEEEE
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIF 287 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~ 287 (334)
....+||+.+++-...+-..|++=||||.++.|+ |.......+.+.|.|-..+ |.+..+..+++..|...
T Consensus 561 ~G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~~e~~i~l~~~~-i~~a~e~~~~~~~~~~~ 631 (638)
T KOG1738|consen 561 RGDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRAAESVIKLPLFT-ISVAEEVLGKPELTGEK 631 (638)
T ss_pred cchhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhchhheeeccchh-hhhHHHhccCHhhhccc
Confidence 3456788844332232346799999999999998 9888878899999987753 43333334444444443
No 89
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=89.73 E-value=2.4 Score=37.64 Aligned_cols=39 Identities=8% Similarity=0.217 Sum_probs=32.3
Q ss_pred CceEEEEe--------CCeEEEEEcCCHHHHHHHHHHHHHHHHhhcc
Q psy17028 281 PKAFEIFT--------GDDSLILKPKNGKNAEQWVQCLSVVVAHSQA 319 (334)
Q Consensus 281 ~~~F~I~T--------~~RTy~L~AdS~ee~~eWI~AI~~aIa~~~~ 319 (334)
.+.++|+. |+++|.|++.+.|.++..++.|++++..+++
T Consensus 113 ~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre~~r 159 (160)
T cd01255 113 NFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRESVR 159 (160)
T ss_pred ceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence 46788753 4568999999999999999999999977543
No 90
>KOG1170|consensus
Probab=89.47 E-value=0.021 Score=61.80 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=61.7
Q ss_pred eEEEEeccccCCCcccCCceeEEEEEeCCe-eEEecCCCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEEEEc
Q psy17028 219 VIEGQLKEKKGRWKIFKRWRTRYFTLSGAH-LSYKGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKP 297 (334)
Q Consensus 219 lkeGwLkkK~G~~~~~K~WKrRwFVL~~~~-L~Yk~~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~L~A 297 (334)
+..|-. +++... ...||+|+|.+++.. +.|-+......-..+++++....+... ++.++.|.|.|+-|+..++|
T Consensus 3 ~~rgl~-~~~~ne--~Ea~k~r~~~~k~~~~~~vakTa~g~~~~~~d~t~a~~~eSs~--~n~~~sf~vi~~~rk~r~~a 77 (1099)
T KOG1170|consen 3 VTRGLD-NDVDNE--REAWKQSILRAKDRMPEKVAKTASGPLFALLDLTSAHVAESST--NNPRPSFCVITPVRKHRLCA 77 (1099)
T ss_pred cccccc-cccccH--HHHHHHHHHHHHHHHHHHHHhccCCccHHHHhccccccccccc--CCCCCCeeEecccHHhhhhc
Confidence 455666 444333 477999999988876 334332222333456666654333222 34567899999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy17028 298 KNGKNAEQWVQCLSVV 313 (334)
Q Consensus 298 dS~ee~~eWI~AI~~a 313 (334)
|+..+|++||.+++..
T Consensus 78 dn~ke~e~wi~~~kt~ 93 (1099)
T KOG1170|consen 78 DNRKEMEKWINQSKTP 93 (1099)
T ss_pred cchhHHHHhhccccch
Confidence 9999999999999875
No 91
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=88.74 E-value=1.1 Score=37.86 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=35.0
Q ss_pred CCceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q psy17028 280 IPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQ 318 (334)
Q Consensus 280 k~~~F~I~T~~RTy~L~AdS~ee~~eWI~AI~~aIa~~~ 318 (334)
..+.|.|.|..+...|.++|..+.+.|++.|+..+....
T Consensus 69 ~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~~~~ 107 (110)
T PF08458_consen 69 ERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLSQVA 107 (110)
T ss_pred eEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHHHhh
Confidence 346799999999999999999999999999999987753
No 92
>PF15411 PH_10: Pleckstrin homology domain
Probab=88.43 E-value=4.5 Score=34.28 Aligned_cols=88 Identities=24% Similarity=0.279 Sum_probs=56.8
Q ss_pred CCceEEEEeccccCCCcccCCceeEEEEEeCCeeE-EecCC---C-------------C---CccceEEcCCeeEEEecC
Q psy17028 216 SHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSK---E-------------D---KQETPIDVHRIRSVKVSR 275 (334)
Q Consensus 216 g~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~---~-------------~---~p~g~I~L~~~~sV~~~~ 275 (334)
|.-+.-|-+..+++ ..|+..++-|=+..|. .|+.+ . . ..+|.|.++.++.|....
T Consensus 5 G~Lll~g~~~V~k~-----~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s 79 (116)
T PF15411_consen 5 GELLLHGTLTVGKD-----DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSS 79 (116)
T ss_pred cceEEccEEEEEeC-----CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccC
Confidence 34445555544443 3378888777777665 55421 0 0 146888888877775432
Q ss_pred CCCCCCceEEEEe-CC---eEEEEEcCCHHHHHHHHHHH
Q psy17028 276 GARNIPKAFEIFT-GD---DSLILKPKNGKNAEQWVQCL 310 (334)
Q Consensus 276 ~~~~k~~~F~I~T-~~---RTy~L~AdS~ee~~eWI~AI 310 (334)
....+...|.- ++ ..|.|...|++.++.|-++|
T Consensus 80 --~~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 80 --KPGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred --CCCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 23346777865 22 47999999999999998875
No 93
>KOG1264|consensus
Probab=88.17 E-value=0.66 Score=50.92 Aligned_cols=64 Identities=14% Similarity=0.256 Sum_probs=43.9
Q ss_pred ccceEEcCCeeEEEecCCCCCCCceEEEE---eCCeEEEEEcCCHHHHHHHHHHHHHHHHhhccccC
Q psy17028 259 QETPIDVHRIRSVKVSRGARNIPKAFEIF---TGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEM 322 (334)
Q Consensus 259 p~g~I~L~~~~sV~~~~~~~~k~~~F~I~---T~~RTy~L~AdS~ee~~eWI~AI~~aIa~~~~ke~ 322 (334)
..|..|+.....|....+.+.+.+.|.|. +....|.|.|++.||+.+|+++|+.+-...-.+++
T Consensus 852 ~rgi~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a~tk~s 918 (1267)
T KOG1264|consen 852 CRGILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKADTKES 918 (1267)
T ss_pred hhccccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHhhhhhh
Confidence 34456666665565555555566778774 33457999999999999999999987543334443
No 94
>KOG4047|consensus
Probab=87.80 E-value=0.41 Score=49.02 Aligned_cols=97 Identities=11% Similarity=0.136 Sum_probs=63.0
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCCee-------EEe--c-CCCC----CccceEEcCCeeEEEecCCCCCCCc
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHL-------SYK--G-SKED----KQETPIDVHRIRSVKVSRGARNIPK 282 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L-------~Yk--~-~~~~----~p~g~I~L~~~~sV~~~~~~~~k~~ 282 (334)
.++|.|++..++-++ ..|+|.++|.+|..+.. .|. + ++.. -....|.|+.+.+|+....+...+-
T Consensus 7 ~~~k~g~~~~~~~r~-~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~ls~~~S~e~~~~~~~~~~ 85 (429)
T KOG4047|consen 7 CLVKDGVPDNHRNKF-KVKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYLSNLFSFESGRRCQTGPG 85 (429)
T ss_pred cccccCccchhhhhh-ccccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEeeccceeeecccccccCCC
Confidence 467888886666554 23699999999998743 232 2 2111 1237889999999886555443333
Q ss_pred eEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy17028 283 AFEIFTGDDSLILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 283 ~F~I~T~~RTy~L~AdS~ee~~eWI~AI~~aI 314 (334)
.|..++.+-.=+|-+++.-+...|+++|..-.
T Consensus 86 i~~~f~~~a~e~~~~~q~l~~~~w~~~i~~~~ 117 (429)
T KOG4047|consen 86 ITAFFCDRAEELFNMLQDLMQANWINAIEEPA 117 (429)
T ss_pred ceEEEecchHHHHHHHHHHHhhhhhhhhhhcc
Confidence 33333333111888889999999999997643
No 95
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=87.34 E-value=0.27 Score=48.38 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCCCceEEEEecc-ccCCCc-ccCCceeEEEEEeC
Q psy17028 214 QDSHPVIEGQLKE-KKGRWK-IFKRWRTRYFTLSG 246 (334)
Q Consensus 214 ~~g~vlkeGwLkk-K~G~~~-~~K~WKrRwFVL~~ 246 (334)
+.+.+++||.+.+ ++|+.+ ..|+||||||.|++
T Consensus 276 ~~~~~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt~ 310 (310)
T cd05134 276 EQPILLKEGFMIKRAQGRKRFGMKNFKKRWFRLTN 310 (310)
T ss_pred CCcchhhhhhHHHhcccCCcccccchhheeeecCC
Confidence 4456899999954 345433 24789999999974
No 96
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=86.90 E-value=0.23 Score=48.89 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=22.4
Q ss_pred CCCceEEEEeccc-cCCCc-ccCCceeEEEEEeC
Q psy17028 215 DSHPVIEGQLKEK-KGRWK-IFKRWRTRYFTLSG 246 (334)
Q Consensus 215 ~g~vlkeGwLkkK-~G~~~-~~K~WKrRwFVL~~ 246 (334)
.+.+++||.|.++ +|+.+ .+|+||+|||.|+.
T Consensus 280 ~~~~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~~ 313 (313)
T cd05394 280 EPVHLKEGEMYKRAQGRTRIGKKNFKKRWFCLTS 313 (313)
T ss_pred CchhhHHHHHHhhccCCCccccccchhheeecCC
Confidence 3467999999443 34432 24789999999974
No 97
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=86.28 E-value=0.16 Score=50.04 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=22.9
Q ss_pred CCCCceEEEEecccc-CCCc-ccCCceeEEEEEe
Q psy17028 214 QDSHPVIEGQLKEKK-GRWK-IFKRWRTRYFTLS 245 (334)
Q Consensus 214 ~~g~vlkeGwLkkK~-G~~~-~~K~WKrRwFVL~ 245 (334)
+...++|||.+.++. |+.+ ..++||||||.|+
T Consensus 282 ~~~~~~k~g~~~~~~~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 282 LEPVVLKEGFMIKRAQGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred CCchhhhhhhhHhhcccCCCccccchhheeeecC
Confidence 344689999995543 4432 3579999999985
No 98
>KOG3531|consensus
Probab=85.43 E-value=0.83 Score=50.17 Aligned_cols=97 Identities=15% Similarity=0.264 Sum_probs=70.0
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCCeeEEecCC-C-C---CccceEEcCCeeEEEecCCCCCCCceEEEEeCCe
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSK-E-D---KQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDD 291 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~~-~-~---~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~R 291 (334)
..+.+|-| .|-.+ |.-++|-|-|-.+-|.|.... + . ...|-|++. ..++-.+.+-+.|++|.|.+..+
T Consensus 749 E~ir~g~l-lK~sk----kgLqqrmfFLfsdillytsk~~~~~~~fri~g~lP~~--l~~en~en~~s~p~~~ti~~~qk 821 (1036)
T KOG3531|consen 749 EFIRSGCL-LKLSK----KGLQQRMFFLFSDILLYTSKGPDVQKCFRINGDLPLT--LTMENSENEWSVPHCFTISGAQK 821 (1036)
T ss_pred hhhhcCCc-hhhcc----ccchhhhhhhhhhhheeccCCCChhheeEeccCCceE--eeeecccccccCCceEEEeccce
Confidence 56777877 33322 234777788888888785532 1 1 356777777 33444455557899999999999
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHHHhhccc
Q psy17028 292 SLILKPKNGKNAEQWVQCLSVVVAHSQAK 320 (334)
Q Consensus 292 Ty~L~AdS~ee~~eWI~AI~~aIa~~~~k 320 (334)
+.+..|.+.++.+.|...++.+|.-...+
T Consensus 822 ~i~vsast~~~sk~~~~~r~~~i~~~~k~ 850 (1036)
T KOG3531|consen 822 QIYVSASTRRESKKWEFDRRKAIDLAPKK 850 (1036)
T ss_pred EEEEeccchhhhhhhhhccchhhhhcccc
Confidence 99999999999999999999998654444
No 99
>KOG3551|consensus
Probab=84.54 E-value=0.96 Score=45.93 Aligned_cols=92 Identities=18% Similarity=0.376 Sum_probs=65.6
Q ss_pred CceEEEEeccc--cCCCcccCCceeEEEEEeCCeeE-EecCC---C--CCccceEEcCCeeEEEecCCCC----CCCceE
Q psy17028 217 HPVIEGQLKEK--KGRWKIFKRWRTRYFTLSGAHLS-YKGSK---E--DKQETPIDVHRIRSVKVSRGAR----NIPKAF 284 (334)
Q Consensus 217 ~vlkeGwLkkK--~G~~~~~K~WKrRwFVL~~~~L~-Yk~~~---~--~~p~g~I~L~~~~sV~~~~~~~----~k~~~F 284 (334)
++-.=|||-++ .|+ .+.|+.-+.+|++..|. |..-+ + ..|..+.+|-..+-|....+.. +..-.|
T Consensus 291 evkHiGWLaeq~~~~G---~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsF 367 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGG---ISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSF 367 (506)
T ss_pred chhhhhhHHhhccCCC---hhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEE
Confidence 45556999433 233 58899999999999987 65422 1 2477888887766665433321 222468
Q ss_pred EEEeCCe----EEEEEcCCHHHHHHHHHHHH
Q psy17028 285 EIFTGDD----SLILKPKNGKNAEQWVQCLS 311 (334)
Q Consensus 285 ~I~T~~R----Ty~L~AdS~ee~~eWI~AI~ 311 (334)
...|..| +|.|.+++..|+..|...|=
T Consensus 368 a~RtGTrqGV~thlfrvEThrdLa~WtRslV 398 (506)
T KOG3551|consen 368 ATRTGTRQGVETHLFRVETHRELAAWTRSLV 398 (506)
T ss_pred EEecccccceEEEEEEeccHHHHHHHHHHHH
Confidence 8888774 89999999999999999883
No 100
>KOG4424|consensus
Probab=83.26 E-value=1.3 Score=46.90 Aligned_cols=88 Identities=15% Similarity=0.255 Sum_probs=61.9
Q ss_pred CCceeEEEEEeC-Ce--eE-EecCCCCCccceEEcCCeeEEEecCCC--CCCCceEEEEeCCeEEEEEcCCHHHHHHHHH
Q psy17028 235 KRWRTRYFTLSG-AH--LS-YKGSKEDKQETPIDVHRIRSVKVSRGA--RNIPKAFEIFTGDDSLILKPKNGKNAEQWVQ 308 (334)
Q Consensus 235 K~WKrRwFVL~~-~~--L~-Yk~~~~~~p~g~I~L~~~~sV~~~~~~--~~k~~~F~I~T~~RTy~L~AdS~ee~~eWI~ 308 (334)
+.|+.-|++.-. +. ++ |..+.+.....+|+|.++. |.+.+.. ....+.|.++-....++|.|+|++-.++|+.
T Consensus 511 ~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~~~iPl~~~~-v~~pe~~~~~D~~~~~k~~~s~~~~~~~a~~~q~qq~wl~ 589 (623)
T KOG4424|consen 511 KTGILAWSVVPKSDPLVDYSYGSPQDVRAQATIPLPGVE-VTIPEFVRREDLFHVFKLVQSHLSWHLAADDEQLQQRWLE 589 (623)
T ss_pred ccceeeeeeccCCCCccccccCCccccccccccccCccc-cCCCcccccchhcchhhhhhhcceeeeccCCHHHHHHHHH
Confidence 679999998853 33 34 6667777788999999874 3221111 1335667777777799999999999999999
Q ss_pred HHHHHHHhhccccCCC
Q psy17028 309 CLSVVVAHSQAKEMPT 324 (334)
Q Consensus 309 AI~~aIa~~~~ke~~~ 324 (334)
.+..|... ..++.+.
T Consensus 590 ~l~~A~~~-d~~~~~~ 604 (623)
T KOG4424|consen 590 VLLLAVSG-DLKEKPN 604 (623)
T ss_pred HHHhhhcc-cccCCCC
Confidence 99988653 2444433
No 101
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=82.93 E-value=15 Score=28.70 Aligned_cols=83 Identities=12% Similarity=0.126 Sum_probs=57.6
Q ss_pred hHHHHHhhccCc--hhhHHHHHHHHHHhhcCCchhh-----hchHHHHHhh-hcCchhHHHHHHHHHhhccCChhhHHH-
Q psy17028 19 SLPQLCEYLATN--STILATMQIFLHLAEKRPQLLV-----DYVPKLKQAN-EGNANTLCVTVQVVAAVGRLNKDKAQD- 89 (334)
Q Consensus 19 ~vp~L~~~L~~~--~~~~~~l~il~~ia~~~p~~l~-----~~l~~~k~~~-~~~p~~~~~~aki~gavG~~~~~~a~~- 89 (334)
.||.|++.|.++ .....++..|.+++...|.... +.+|.+.+.- ..+|.+...++.+++.+....++....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 788899999877 5556688889999887544333 3344444433 357899999999999998877654333
Q ss_pred ----HHHHHHhhCCCC
Q psy17028 90 ----ALNFILAHLPKA 101 (334)
Q Consensus 90 ----~L~~l~~~L~~~ 101 (334)
.+..|++.|...
T Consensus 88 ~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 88 LEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHCCChHHHHHHHhcC
Confidence 366777777654
No 102
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=82.29 E-value=5.5 Score=40.34 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=75.2
Q ss_pred hHHHHHh-hHHHHHhhccCch--hhHHHHHHHHHHhhcCCch----hhhchHHHHHh-hhcCchhHHHHHHHHHhhccCC
Q psy17028 12 GYKLLEA-SLPQLCEYLATNS--TILATMQIFLHLAEKRPQL----LVDYVPKLKQA-NEGNANTLCVTVQVVAAVGRLN 83 (334)
Q Consensus 12 ~~~~l~~-~vp~L~~~L~~~~--~~~~~l~il~~ia~~~p~~----l~~~l~~~k~~-~~~~p~~~~~~aki~gavG~~~ 83 (334)
.|+.++. .+|.|...|.|+. -...++.++.++ .+.|.. +..+.+.+... +...|.....+.++++..+..+
T Consensus 145 ~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 145 DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS
T ss_pred CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC
Confidence 3556666 5888888888554 445678888888 444443 45556666655 8899999999999999999999
Q ss_pred hhhH--HHHHHHHHhhCCCCcchhhhHHHHHHHHhhccC
Q psy17028 84 KDKA--QDALNFILAHLPKADRSSQSVLLREATLLCSTY 120 (334)
Q Consensus 84 ~~~a--~~~L~~l~~~L~~~d~~~~~~Ll~Ei~~l~~~~ 120 (334)
.+.+ ...++.+.+.|. +.-..++.|+-++.-..
T Consensus 224 ~~~~~~~~~i~~l~~~l~----s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 224 PEDADKNRIIEPLLNLLQ----SSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhh----ccccHHHHHHHHHHHHh
Confidence 9888 778888888887 44555566666655543
No 103
>KOG3549|consensus
Probab=82.13 E-value=4.7 Score=40.64 Aligned_cols=132 Identities=12% Similarity=0.115 Sum_probs=84.0
Q ss_pred cCChhHHHHHHHHHhhcCccccccccccCCCCCCcceeeeccCCcccccccCCCCceEEEEeccc-cCCCcccCCceeEE
Q psy17028 163 LIDAQDQEAVLNELRHSGFCDVFEYGVSGGGKEASWGCFLCNHPERAVGFLQDSHPVIEGQLKEK-KGRWKIFKRWRTRY 241 (334)
Q Consensus 163 f~~~~d~~~~~~~L~~~~~f~~f~~~~~~~g~~~~w~c~~c~~pe~a~~~~~~g~vlkeGwLkkK-~G~~~~~K~WKrRw 241 (334)
|+..+|.-.|++.+.++----.-.-++- .-..|. ...+++.-||...+ ++.. .-..++.||
T Consensus 243 c~~a~d~~dWL~ait~Ni~~LT~~nmK~--------~Nrnf~---------v~~qivyMGWvne~~q~~~-s~q~y~P~F 304 (505)
T KOG3549|consen 243 CDEAADLSDWLKAITDNIVGLTHLNMKL--------YNRNFA---------VGEQIVYMGWVNEGVQNNI-SWQSYKPRF 304 (505)
T ss_pred EhhhhHHHHHHHHHHHHHHHHHHHHHHH--------HhcCCC---------ccceEEEeeeccccccCcc-cccccCcee
Confidence 8899999999888877643111111221 001111 22378899999544 3321 126679999
Q ss_pred EEEeCCeeE-EecCCCCCccceEEcCCee-----------EEEecCCCCCCCceEEEEeCC-eEEEEEcCCHHHHHHHHH
Q psy17028 242 FTLSGAHLS-YKGSKEDKQETPIDVHRIR-----------SVKVSRGARNIPKAFEIFTGD-DSLILKPKNGKNAEQWVQ 308 (334)
Q Consensus 242 FVL~~~~L~-Yk~~~~~~p~g~I~L~~~~-----------sV~~~~~~~~k~~~F~I~T~~-RTy~L~AdS~ee~~eWI~ 308 (334)
..|+|..++ |... |..+.|..... .++-.+....+++||.|.... +..+|..+...|.-+|=+
T Consensus 305 LaLkG~~~y~F~tP----Pv~t~dw~rAe~ty~vye~mfki~Kdsd~~D~R~~CF~~qs~~ge~~yfsVEl~seLa~wE~ 380 (505)
T KOG3549|consen 305 LALKGTEVYLFETP----PVNTADWSRAEVTYKVYETMFKIVKDSDTVDSRQHCFLLQSSGGEPRYFSVELRSELARWEN 380 (505)
T ss_pred EEecCcEEEEEcCC----CcchhhhhhhhhhHHHHHHHHHHhccccccccccceEEEEcCCCCceEEEEehhhHHHHHHH
Confidence 999999998 6543 33333333221 112122224678999998776 689999999999999999
Q ss_pred HHHHHHHh
Q psy17028 309 CLSVVVAH 316 (334)
Q Consensus 309 AI~~aIa~ 316 (334)
+.+.|+-.
T Consensus 381 sfq~Atf~ 388 (505)
T KOG3549|consen 381 SFQAATFT 388 (505)
T ss_pred HHhhHHhH
Confidence 99988654
No 104
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=79.63 E-value=2.8 Score=36.32 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=22.7
Q ss_pred ceEEEEeCCe---EEEEEcCCHHHHHHHHHHHHHH
Q psy17028 282 KAFEIFTGDD---SLILKPKNGKNAEQWVQCLSVV 313 (334)
Q Consensus 282 ~~F~I~T~~R---Ty~L~AdS~ee~~eWI~AI~~a 313 (334)
+.|.|.--++ +|.|.|+|..++++|+++|..+
T Consensus 100 yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 100 YPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 4566654443 6899999999999999999764
No 105
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=77.47 E-value=8.6 Score=38.96 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=81.9
Q ss_pred HHHHhhHHHHHhhccCch--hhHHHHHHHHHHhhcCCchhhhchHHHHHhh-hcCchhHHHHHHHHHhhccCChhhHHHH
Q psy17028 14 KLLEASLPQLCEYLATNS--TILATMQIFLHLAEKRPQLLVDYVPKLKQAN-EGNANTLCVTVQVVAAVGRLNKDKAQDA 90 (334)
Q Consensus 14 ~~l~~~vp~L~~~L~~~~--~~~~~l~il~~ia~~~p~~l~~~l~~~k~~~-~~~p~~~~~~aki~gavG~~~~~~a~~~ 90 (334)
.+++.+++.|+..|.++. ....+|+.|..++...|..+......+-..- +..+++--.+..++..+ ++++-+++-
T Consensus 263 ~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l--~~~~n~~~I 340 (526)
T PF01602_consen 263 ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKL--ANESNVKEI 340 (526)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhc--ccccchhhH
Confidence 378999999999999554 4667999999999999655553333444444 56666665565665555 478899999
Q ss_pred HHHHHhhC-CCCcchhhhHHHHHHHHhhccCCCcccc
Q psy17028 91 LNFILAHL-PKADRSSQSVLLREATLLCSTYPVLCTD 126 (334)
Q Consensus 91 L~~l~~~L-~~~d~~~~~~Ll~Ei~~l~~~~p~ll~~ 126 (334)
++-|.+++ ...|...+..++.-|..++.+||.-...
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~ 377 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEW 377 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHH
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHH
Confidence 99999999 4558889999999999999999864433
No 106
>PF14470 bPH_3: Bacterial PH domain
Probab=77.29 E-value=31 Score=26.66 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=56.5
Q ss_pred CceeEEEEEeCCeeE-EecC-CCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEEEEcCCHHHHHHHHHHHH
Q psy17028 236 RWRTRYFTLSGAHLS-YKGS-KEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLS 311 (334)
Q Consensus 236 ~WKrRwFVL~~~~L~-Yk~~-~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~L~AdS~ee~~eWI~AI~ 311 (334)
.++.=++++++..|. |... ........|+++.+.+|+...+- ....+.|.++++.+.+..=+..+.++=+..|+
T Consensus 20 ~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~--~~~~i~i~~~~~~~~i~~i~k~~~~~~~~~i~ 95 (96)
T PF14470_consen 20 TSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI--LGGKITIETNGEKIKIDNIQKGDVKEFYEYIK 95 (96)
T ss_pred cCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc--cccEEEEEECCEEEEEEEcCHHHHHHHHHHHh
Confidence 356778999999987 5443 22356689999999999875432 23569999999999998888888888877775
No 107
>KOG3551|consensus
Probab=76.70 E-value=2.8 Score=42.68 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=39.6
Q ss_pred cceEEcCCeeEEEecCCCCCCCceEEEEeCCe--EEEEEcCCHHHHHHHHHHHHHHHH
Q psy17028 260 ETPIDVHRIRSVKVSRGARNIPKAFEIFTGDD--SLILKPKNGKNAEQWVQCLSVVVA 315 (334)
Q Consensus 260 ~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~R--Ty~L~AdS~ee~~eWI~AI~~aIa 315 (334)
...|+|.-+-..+-.......+.+|+|..++. |..|.|.|..+++.|..||..++.
T Consensus 215 ~k~IpLKm~yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~ 272 (506)
T KOG3551|consen 215 RKTIPLKMAYVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVN 272 (506)
T ss_pred ccccchhhHHHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHh
Confidence 45666665432221112223456899999984 899999999999999999988764
No 108
>PTZ00429 beta-adaptin; Provisional
Probab=74.07 E-value=20 Score=39.47 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=63.6
Q ss_pred HHHHhhcc-CchhhHHHHHHHHHHhhcCCchhhhchHH----------------------------------HHHhh-hc
Q psy17028 21 PQLCEYLA-TNSTILATMQIFLHLAEKRPQLLVDYVPK----------------------------------LKQAN-EG 64 (334)
Q Consensus 21 p~L~~~L~-~~~~~~~~l~il~~ia~~~p~~l~~~l~~----------------------------------~k~~~-~~ 64 (334)
+-|+..+. +|....++|.-+..|+..+|..|..++.. |++-+ +.
T Consensus 301 ~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~ 380 (746)
T PTZ00429 301 TALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGV 380 (746)
T ss_pred HHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcC
Confidence 44444443 56677777777777777778777776522 33322 23
Q ss_pred CchhHHHHHHHHHhhccCChhhHHHHHHHHHhhCCCCcchhhhHHHHHHHHhhccCCCc
Q psy17028 65 NANTLCVTVQVVAAVGRLNKDKAQDALNFILAHLPKADRSSQSVLLREATLLCSTYPVL 123 (334)
Q Consensus 65 ~p~~~~~~aki~gavG~~~~~~a~~~L~~l~~~L~~~d~~~~~~Ll~Ei~~l~~~~p~l 123 (334)
.+.+.-.+.+-+|.+..--+..|..|+++|++.|.+-..- ..-.+.-++.|...||..
T Consensus 381 D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~-v~e~i~vik~IlrkyP~~ 438 (746)
T PTZ00429 381 DMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPEL-LPQVVTAAKDIVRKYPEL 438 (746)
T ss_pred CHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHCccH
Confidence 3444444445555555444578999999999998763222 223456788888899974
No 109
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=72.15 E-value=20 Score=28.98 Aligned_cols=77 Identities=13% Similarity=0.255 Sum_probs=49.3
Q ss_pred CceeEEEEEe--CCe---eE-Eec--CCCC--CccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEEEEEcCCHHHHHH
Q psy17028 236 RWRTRYFTLS--GAH---LS-YKG--SKED--KQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQ 305 (334)
Q Consensus 236 ~WKrRwFVL~--~~~---L~-Yk~--~~~~--~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy~L~AdS~ee~~e 305 (334)
+-|.||..|. .+. .. ++- +.+. ....+=+|.+.+.|+...+.. ....|.+.. +++|+..|+|.+|++.
T Consensus 2 ~kK~r~Lclsv~~~~~~~v~l~k~K~~~~g~f~i~ktW~L~eL~~I~~~~~~~-~~~~F~l~~-~k~y~W~a~s~~Ek~~ 79 (91)
T PF15277_consen 2 KKKPRYLCLSVTNSPRIQVRLHKVKQNDNGSFQIGKTWDLDELKAIDGINPDK-DTPEFDLTF-DKPYYWEASSAKEKNT 79 (91)
T ss_dssp GEEEEEEEEEEETTETTEEEEEEEEE-CCS-EEEEEEEEGGG--EEEE-SSS---TTEEEEES-SSEEEEEESSHHHHHH
T ss_pred CcccEEEEEEEecCCceEEEEEEEEecCCCcEEEeeEEehhhceeeeeecCCC-CCcCEEEEE-CCCcEEEeCCHHHHHH
Confidence 3477887774 222 33 433 2222 245677888888887644332 234899866 6699999999999999
Q ss_pred HHHHHHHHH
Q psy17028 306 WVQCLSVVV 314 (334)
Q Consensus 306 WI~AI~~aI 314 (334)
.|.+|-...
T Consensus 80 Fi~~L~k~~ 88 (91)
T PF15277_consen 80 FIRSLWKLY 88 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999997654
No 110
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=71.80 E-value=4.4 Score=37.11 Aligned_cols=53 Identities=26% Similarity=0.306 Sum_probs=42.0
Q ss_pred chHHHHHhhHHHHHhhcc------CchhhHHHHHHHHHH---hhcCCchhhhchHHHHHhhh
Q psy17028 11 GGYKLLEASLPQLCEYLA------TNSTILATMQIFLHL---AEKRPQLLVDYVPKLKQANE 63 (334)
Q Consensus 11 ~~~~~l~~~vp~L~~~L~------~~~~~~~~l~il~~i---a~~~p~~l~~~l~~~k~~~~ 63 (334)
||.+.+-++||||+.-|+ |+....++|.+|..+ +..=..+|+.|+++|--+-.
T Consensus 69 ~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 69 GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 566688899999998765 777778899999888 77777899999777654444
No 111
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=71.05 E-value=52 Score=29.87 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=63.0
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCCeeE-Ee-----cCCCCCccceEEcCCeeEEEecCCCCCCCceEEEEeCC
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YK-----GSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGD 290 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~-Yk-----~~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~ 290 (334)
.++.+... .|=++. ..=.+|.++|++..++ .. +.........|+|.++++|.+.... ...|.|..++
T Consensus 49 ~vlFs~~v-~K~nr~---~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~~---D~~~vihv~~ 121 (199)
T PF06017_consen 49 KVLFSDRV-QKYNRR---NKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPLS---DNFFVIHVPG 121 (199)
T ss_pred ceEEEEEE-EEecCC---CCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccCC---CCEEEEEECC
Confidence 68888887 554432 1238999999999998 53 3233457889999999998875432 3467777655
Q ss_pred -eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy17028 291 -DSLILKPKNGKNAEQWVQCLSVVVAHS 317 (334)
Q Consensus 291 -RTy~L~AdS~ee~~eWI~AI~~aIa~~ 317 (334)
.-+.|+++.. .|=+..|..+....
T Consensus 122 ~~D~il~~~~k---~Elv~~L~~~~~~~ 146 (199)
T PF06017_consen 122 EGDLILESDFK---TELVTILCKAYKKA 146 (199)
T ss_pred CCCEEEEeCcH---HHHHHHHHHHHHHH
Confidence 4688888876 55677777666543
No 112
>KOG2070|consensus
Probab=70.48 E-value=5.9 Score=41.53 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=60.7
Q ss_pred CCceEEEEeccccCCCcccCCceeEEEEEeCCeeEEec-CCCC---CccceEEcCCeeEEEecCCCCCCCceEEEEeCC-
Q psy17028 216 SHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKG-SKED---KQETPIDVHRIRSVKVSRGARNIPKAFEIFTGD- 290 (334)
Q Consensus 216 g~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~-~~~~---~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~- 290 (334)
|+++.-|.....-++ -.=+.|||+|-.+.|.|.. +++- --.|.+++++...-+..+.+ ...++|+|..+.
T Consensus 308 G~iiymg~v~Vqy~~----ad~~dRy~~LF~~~llflsvs~rMs~fIyegKlp~tG~iV~klEdte-~~~nafeis~~ti 382 (661)
T KOG2070|consen 308 GNIIYMGQVLVQYAG----ADEKDRYLLLFPNVLLFLSVSPRMSGFIYEGKLPTTGMIVTKLEDTE-NHRNAFEISGSTI 382 (661)
T ss_pred cceEeeeehhhhhcC----cchhhheeeeccceeeeeEeccccchhhhccccccceeEEeehhhhh-cccccccccccch
Confidence 567777776443222 1136999999999987433 3321 14578888886544443322 345789986544
Q ss_pred eEEEEEcCCHHHHHHHHHHHHH
Q psy17028 291 DSLILKPKNGKNAEQWVQCLSV 312 (334)
Q Consensus 291 RTy~L~AdS~ee~~eWI~AI~~ 312 (334)
.-....++++.+.++|+.+++.
T Consensus 383 ~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 383 ERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred hheeeccCChHHHHHHHHHhhh
Confidence 3466789999999999999985
No 113
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=69.84 E-value=1.4 Score=43.84 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=19.9
Q ss_pred CceEEEEec--cccCCCcc-cCCceeEEEEEe
Q psy17028 217 HPVIEGQLK--EKKGRWKI-FKRWRTRYFTLS 245 (334)
Q Consensus 217 ~vlkeGwLk--kK~G~~~~-~K~WKrRwFVL~ 245 (334)
.++++|.+. +++|+.+. .++||+|||.|+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 331 (337)
T cd05395 300 TMVKEGFLFLHRTKGKGPLMTSPFKKLYFTLT 331 (337)
T ss_pred hHHHHHHHHHHhccCCCCccccchhhheeeee
Confidence 445777763 34455432 489999999998
No 114
>KOG4407|consensus
Probab=68.20 E-value=0.32 Score=55.48 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=62.5
Q ss_pred CceEEEEeccc-----cCC--CcccCCceeEEEEEeCCeeE-EecCCC--CCc------------cceEEcCCeeEEEec
Q psy17028 217 HPVIEGQLKEK-----KGR--WKIFKRWRTRYFTLSGAHLS-YKGSKE--DKQ------------ETPIDVHRIRSVKVS 274 (334)
Q Consensus 217 ~vlkeGwLkkK-----~G~--~~~~K~WKrRwFVL~~~~L~-Yk~~~~--~~p------------~g~I~L~~~~sV~~~ 274 (334)
+.-++|||+.+ .|+ -+.++.||+-|-.|.++.|+ |++..+ ..+ .-.+-++.|- +++.
T Consensus 922 d~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscl-tdI~ 1000 (1973)
T KOG4407|consen 922 DSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCL-TDIQ 1000 (1973)
T ss_pred hhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccch-hhhh
Confidence 45677887433 221 01278999999999999987 876432 111 1223333331 1111
Q ss_pred CCCCCCCceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHH
Q psy17028 275 RGARNIPKAFEIFTGD-DSLILKPKNGKNAEQWVQCLSVVV 314 (334)
Q Consensus 275 ~~~~~k~~~F~I~T~~-RTy~L~AdS~ee~~eWI~AI~~aI 314 (334)
-..+++.+.|.+.|.+ -.+.|+|++.++|-.|++-+++-.
T Consensus 1001 ysetkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~St 1041 (1973)
T KOG4407|consen 1001 YSETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSST 1041 (1973)
T ss_pred hhhhhhhhHHHhHHHHHHhHhhccCccccccchhhhhhhcc
Confidence 1123456789998888 579999999999999999987654
No 115
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=63.89 E-value=40 Score=29.85 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=39.9
Q ss_pred HHHHhhHHHHHhhccCc--hhhHHHHHHHHHHhhcCCchhhhch--HHHHHhhhcCchhH
Q psy17028 14 KLLEASLPQLCEYLATN--STILATMQIFLHLAEKRPQLLVDYV--PKLKQANEGNANTL 69 (334)
Q Consensus 14 ~~l~~~vp~L~~~L~~~--~~~~~~l~il~~ia~~~p~~l~~~l--~~~k~~~~~~p~~~ 69 (334)
.+++..+|.+...|.|+ .-...++.+|.++.......+-+.+ .-++...+.+|..-
T Consensus 21 ~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 21 NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 47889999999999977 5566799999999888777766664 33344444444433
No 116
>KOG0517|consensus
Probab=62.79 E-value=0.41 Score=56.18 Aligned_cols=98 Identities=20% Similarity=0.289 Sum_probs=67.0
Q ss_pred ceEEEEeccccC-----CCcccCCceeEEEEEeCCeeE-EecCCCCC------ccceEEcCCe-eEEEecCCCCCCCceE
Q psy17028 218 PVIEGQLKEKKG-----RWKIFKRWRTRYFTLSGAHLS-YKGSKEDK------QETPIDVHRI-RSVKVSRGARNIPKAF 284 (334)
Q Consensus 218 vlkeGwLkkK~G-----~~~~~K~WKrRwFVL~~~~L~-Yk~~~~~~------p~g~I~L~~~-~sV~~~~~~~~k~~~F 284 (334)
..++|+|..|.- ..-+.+.|..-|+++..+.+. |++.+... ..|.-+|.-. ..|++..+...+.+.|
T Consensus 2299 ~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~dy~kkk~v~ 2378 (2473)
T KOG0517|consen 2299 RQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVASDYHKKKHVF 2378 (2473)
T ss_pred HHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHHHHHHHHhHhh
Confidence 367899966641 111248899999999999986 77754322 2233333321 1233333445667889
Q ss_pred EEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHH
Q psy17028 285 EIFTGD-DSLILKPKNGKNAEQWVQCLSVVVA 315 (334)
Q Consensus 285 ~I~T~~-RTy~L~AdS~ee~~eWI~AI~~aIa 315 (334)
.+..++ ..|.|+|.++++|+.|++++...++
T Consensus 2379 ~l~~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2379 LLQLPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred hhcCCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 998776 5799999999999999999988775
No 117
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=62.76 E-value=3 Score=41.42 Aligned_cols=32 Identities=34% Similarity=0.371 Sum_probs=20.4
Q ss_pred CCCCceEEEEeccccC-C--CcccCCceeEEEEEe
Q psy17028 214 QDSHPVIEGQLKEKKG-R--WKIFKRWRTRYFTLS 245 (334)
Q Consensus 214 ~~g~vlkeGwLkkK~G-~--~~~~K~WKrRwFVL~ 245 (334)
++.-+++||.+.++.. + ......||+|||.|+
T Consensus 299 ~~~~~~~eg~~~~r~~~~~~~~~~~~fkk~~f~l~ 333 (333)
T cd05135 299 LPSVTVKEGYLHKRKTEGPQLLTRFAFKKRYFWLS 333 (333)
T ss_pred CCCchhhhhHhhhccccCCCCcccccccceeeecC
Confidence 4456789999954431 1 111235999999885
No 118
>KOG1059|consensus
Probab=60.24 E-value=35 Score=37.58 Aligned_cols=72 Identities=24% Similarity=0.312 Sum_probs=60.1
Q ss_pred HHHHHhhHHHHHhhccCchhh--HHHHHHHHHHhhcCCchhhhchHHHHHh--hhcCchhHHHHHHHHHhhccCCh
Q psy17028 13 YKLLEASLPQLCEYLATNSTI--LATMQIFLHLAEKRPQLLVDYVPKLKQA--NEGNANTLCVTVQVVAAVGRLNK 84 (334)
Q Consensus 13 ~~~l~~~vp~L~~~L~~~~~~--~~~l~il~~ia~~~p~~l~~~l~~~k~~--~~~~p~~~~~~aki~gavG~~~~ 84 (334)
|+.|.+|.|-|++-|-||..+ .++.+|+-|+|...|.....+-|-+=+. -.+|-+.+-...|++||.--+..
T Consensus 176 PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP 251 (877)
T KOG1059|consen 176 PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP 251 (877)
T ss_pred hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCc
Confidence 689999999999999976654 6799999999999999988887776554 35677888889999999866554
No 119
>KOG1242|consensus
Probab=53.40 E-value=17 Score=38.72 Aligned_cols=102 Identities=21% Similarity=0.233 Sum_probs=83.5
Q ss_pred HHHhhHHHHHhhccCch-hhHHHHHHHHH---HhhcCCchhhhchHHHH-HhhhcCchhHHHHHHHHHhhccCChhhHHH
Q psy17028 15 LLEASLPQLCEYLATNS-TILATMQIFLH---LAEKRPQLLVDYVPKLK-QANEGNANTLCVTVQVVAAVGRLNKDKAQD 89 (334)
Q Consensus 15 ~l~~~vp~L~~~L~~~~-~~~~~l~il~~---ia~~~p~~l~~~l~~~k-~~~~~~p~~~~~~aki~gavG~~~~~~a~~ 89 (334)
.+++.||.|++.+.||+ ..+..+..|.. |+.-.|..|+-..|-++ ...++.-.+-=++|+|++..-.+=||. ++
T Consensus 330 dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp-~~ 408 (569)
T KOG1242|consen 330 DIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP-KD 408 (569)
T ss_pred HHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH-HH
Confidence 47889999999999999 88888877765 56677888888888775 457888888899999999887776654 45
Q ss_pred HHHHHHhhCCCCcchhhhHHHHHHHHhhc
Q psy17028 90 ALNFILAHLPKADRSSQSVLLREATLLCS 118 (334)
Q Consensus 90 ~L~~l~~~L~~~d~~~~~~Ll~Ei~~l~~ 118 (334)
.-.||=+.++..+++.... +-|++.+..
T Consensus 409 lapfl~~Llp~lk~~~~d~-~PEvR~vaa 436 (569)
T KOG1242|consen 409 LAPFLPSLLPGLKENLDDA-VPEVRAVAA 436 (569)
T ss_pred HhhhHHHHhhHHHHHhcCC-ChhHHHHHH
Confidence 5689999999999998888 888877654
No 120
>KOG3520|consensus
Probab=48.84 E-value=31 Score=39.65 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=40.9
Q ss_pred ceEEcCCeeEEE-ecCCCCCCCceEEEEeCC---eEEEEEcCCHHHHHHHHHHHHHHHHhhcccc
Q psy17028 261 TPIDVHRIRSVK-VSRGARNIPKAFEIFTGD---DSLILKPKNGKNAEQWVQCLSVVVAHSQAKE 321 (334)
Q Consensus 261 g~I~L~~~~sV~-~~~~~~~k~~~F~I~T~~---RTy~L~AdS~ee~~eWI~AI~~aIa~~~~ke 321 (334)
..|.|... .|. ++ +.+.-.|.|.+.. .-|.|.|.|.+|++-||+.|+.++......+
T Consensus 668 pVisL~~l-ivRevA---td~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~~ 728 (1167)
T KOG3520|consen 668 PVISLQKL-IVREVA---TDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRNE 728 (1167)
T ss_pred CceehHHH-HHHHHh---ccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCccc
Confidence 56666654 121 22 2334578888874 4699999999999999999999998764444
No 121
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=48.22 E-value=47 Score=26.76 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=36.1
Q ss_pred CCccceEEcCCeeEEEecCCCCCCCceEEEEeCC-eEEEEEcCCHHHHHHHHHH
Q psy17028 257 DKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGD-DSLILKPKNGKNAEQWVQC 309 (334)
Q Consensus 257 ~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~-RTy~L~AdS~ee~~eWI~A 309 (334)
......+++++++.|.. +..--++.+.+|.+.+ ++|+|.-+|.+++++=+++
T Consensus 52 ~~~~~~w~~~~I~~v~~-RRyllr~~AlEiF~~dg~s~f~~F~~~~~R~~v~~~ 104 (106)
T PF14844_consen 52 KPKSKRWPLSDIKEVHK-RRYLLRDTALEIFFSDGRSYFFNFESKKERDEVYNK 104 (106)
T ss_dssp --TCEEEEGGGEEEEEE-EEETTEEEEEEEEETTS-EEEEE-SSHHHHHHHHCC
T ss_pred CCceEEEEHHHhHHHHH-HHhcCcceEEEEEEcCCcEEEEEcCCHHHHHHHHHh
Confidence 34667899999988764 2222346789999866 6999999999999875543
No 122
>KOG3727|consensus
Probab=47.51 E-value=4.5 Score=42.87 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=52.7
Q ss_pred cCCceeEEEEEeCCee----EEecCCCCCccceEEcCCeeEEEecCCCCCCCceEEEEeC---CeEEEEEcCCHHHHHHH
Q psy17028 234 FKRWRTRYFTLSGAHL----SYKGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTG---DDSLILKPKNGKNAEQW 306 (334)
Q Consensus 234 ~K~WKrRwFVL~~~~L----~Yk~~~~~~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~---~RTy~L~AdS~ee~~eW 306 (334)
+|..||-||..++-.+ .|.+++ ..|...|++.+|....+....+.+-.-|-|+.. ...+++.+++++.--+|
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~-~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~W 450 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSR-GAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARW 450 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhc-CCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHH
Confidence 3556666666665554 344444 678899999988654432332333334544433 24799999999999999
Q ss_pred HHHHHHHH
Q psy17028 307 VQCLSVVV 314 (334)
Q Consensus 307 I~AI~~aI 314 (334)
+.|-+-|.
T Consensus 451 MAaCrLAS 458 (664)
T KOG3727|consen 451 MAACRLAS 458 (664)
T ss_pred HHHhhHhh
Confidence 99988774
No 123
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=46.95 E-value=55 Score=24.47 Aligned_cols=70 Identities=11% Similarity=0.187 Sum_probs=39.9
Q ss_pred HHHHHhhc-cC--chhhHHHHHHHHHHhhcCCchhhhchHHHHHhhhcCchhHHHHHHHHHhhccCChhhHHHHHHHHHh
Q psy17028 20 LPQLCEYL-AT--NSTILATMQIFLHLAEKRPQLLVDYVPKLKQANEGNANTLCVTVQVVAAVGRLNKDKAQDALNFILA 96 (334)
Q Consensus 20 vp~L~~~L-~~--~~~~~~~l~il~~ia~~~p~~l~~~l~~~k~~~~~~p~~~~~~aki~gavG~~~~~~a~~~L~~l~~ 96 (334)
||.|+..| .| +.....+..+|.++ ......+.|-.+ ..+.+|.+--.++..+|.+| . .+++..|.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~---~~~~~~~~L~~~--l~d~~~~vr~~a~~aL~~i~---~---~~~~~~L~~ 69 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL---GDPEAIPALIEL--LKDEDPMVRRAAARALGRIG---D---PEAIPALIK 69 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC---THHHHHHHHHHH--HTSSSHHHHHHHHHHHHCCH---H---HHTHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHhHHHHHHHH--HcCCCHHHHHHHHHHHHHhC---C---HHHHHHHHH
Confidence 68899999 43 34444556665544 322333333222 25667777777777777665 3 445566666
Q ss_pred hCCC
Q psy17028 97 HLPK 100 (334)
Q Consensus 97 ~L~~ 100 (334)
.+.+
T Consensus 70 ~l~~ 73 (88)
T PF13646_consen 70 LLQD 73 (88)
T ss_dssp HHTC
T ss_pred HHcC
Confidence 5555
No 124
>PF12456 hSac2: Inositol phosphatase ; InterPro: IPR022158 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF02383 from PFAM. hSac2 functions as an inositol polyphosphate 5-phosphatase.
Probab=43.82 E-value=1.8e+02 Score=24.34 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=41.9
Q ss_pred cCCCCceEEEEeccccCCCcccCCceeEEEEEeCCeeE--Eec-CCCC-CccceEEcCCeeEEEec
Q psy17028 213 LQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS--YKG-SKED-KQETPIDVHRIRSVKVS 274 (334)
Q Consensus 213 ~~~g~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~--Yk~-~~~~-~p~g~I~L~~~~sV~~~ 274 (334)
+.++..+..||+...-..+..--+=+.|-..|++..|+ .++ ..++ ..-..|+|..+..|..+
T Consensus 25 ~~~~e~~i~gW~L~~~~~~~~~~~e~E~vlLLTd~alyi~~YD~~~~kv~~~~ri~L~~I~~I~~G 90 (115)
T PF12456_consen 25 IPDDEEFIGGWLLTEPDHWNKTENEEERVLLLTDKALYICKYDFIMEKVSQFQRIPLNDIDKIQIG 90 (115)
T ss_pred cCCCCcEEEEEEEEecCcccCCCcccceEEEEecCEEEEEEecCCCccEEEEEEEecccCcEEEEe
Confidence 34456788999966555541001458999999999986 444 3322 34578999999888864
No 125
>KOG3523|consensus
Probab=43.10 E-value=26 Score=37.75 Aligned_cols=76 Identities=20% Similarity=0.330 Sum_probs=46.0
Q ss_pred CceeEEEEEeCCeeE-Eec-CCC------CCccceEEcCCeeE-EEecCC---CCCCCceEEEE----eCCe--EEEEEc
Q psy17028 236 RWRTRYFTLSGAHLS-YKG-SKE------DKQETPIDVHRIRS-VKVSRG---ARNIPKAFEIF----TGDD--SLILKP 297 (334)
Q Consensus 236 ~WKrRwFVL~~~~L~-Yk~-~~~------~~p~g~I~L~~~~s-V~~~~~---~~~k~~~F~I~----T~~R--Ty~L~A 297 (334)
.-|.-|+-|-++.|. -|. +.+ -.+...|.+..+.. -+...+ ..+.++.|.+. +.++ .|.|.|
T Consensus 498 ~~~~vylfLFnD~Llitk~k~~~~f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL~a 577 (695)
T KOG3523|consen 498 LSKTVYLFLFNDLLLITKKKSEGSFQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTELLLSA 577 (695)
T ss_pred ccceeeeeeecceeeEeeecCCCceEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceeeeecC
Confidence 345778888888775 333 221 12444454444432 111111 12456788874 3344 699999
Q ss_pred CCHHHHHHHHHHHH
Q psy17028 298 KNGKNAEQWVQCLS 311 (334)
Q Consensus 298 dS~ee~~eWI~AI~ 311 (334)
+|+-|+++||+|+.
T Consensus 578 ~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 578 ESQSDRQRWISALR 591 (695)
T ss_pred CchHHHHHHHHhcC
Confidence 99999999999986
No 126
>KOG1077|consensus
Probab=43.02 E-value=1.4e+02 Score=33.12 Aligned_cols=114 Identities=16% Similarity=0.216 Sum_probs=80.3
Q ss_pred ccccCCCcchHHHHHhhHHHHHhhccC--chhhHHHHHHHHHHhhcCCch--hhhchHHHHHhhhcCc--hhHHHHHHHH
Q psy17028 3 IHYHPNLCGGYKLLEASLPQLCEYLAT--NSTILATMQIFLHLAEKRPQL--LVDYVPKLKQANEGNA--NTLCVTVQVV 76 (334)
Q Consensus 3 ~~~~~~~~~~~~~l~~~vp~L~~~L~~--~~~~~~~l~il~~ia~~~p~~--l~~~l~~~k~~~~~~p--~~~~~~aki~ 76 (334)
||+.| -+++++.|+.+|+.+|.+ +.....+|--+..++...++. +-.|.+++-..-.+-+ .+.-.+.-.+
T Consensus 318 ~h~D~----e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLL 393 (938)
T KOG1077|consen 318 IHLDS----EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLL 393 (938)
T ss_pred HHcCC----cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 45554 479999999999999984 666788999999999988764 4445444333322222 1111122221
Q ss_pred HhhccCChhhHHHHHHHHHhhCCCCcchhhhHHHHHHHHhhccCCC
Q psy17028 77 AAVGRLNKDKAQDALNFILAHLPKADRSSQSVLLREATLLCSTYPV 122 (334)
Q Consensus 77 gavG~~~~~~a~~~L~~l~~~L~~~d~~~~~~Ll~Ei~~l~~~~p~ 122 (334)
-+-.|++-|.+-..=|++.|.++|-+...-+...|.=|..+|-.
T Consensus 394 --Y~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 394 --YAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred --HHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 13467778888888888889999999999999999999998864
No 127
>KOG2434|consensus
Probab=42.07 E-value=53 Score=34.65 Aligned_cols=99 Identities=15% Similarity=0.073 Sum_probs=71.6
Q ss_pred cCchhhHHHHHHHHHHhhcCCchhhhchHHHHHhhhcCchhHHHHHHHHHhhccCChhhHHHHHHHHHhhCCCCcchhhh
Q psy17028 28 ATNSTILATMQIFLHLAEKRPQLLVDYVPKLKQANEGNANTLCVTVQVVAAVGRLNKDKAQDALNFILAHLPKADRSSQS 107 (334)
Q Consensus 28 ~~~~~~~~~l~il~~ia~~~p~~l~~~l~~~k~~~~~~p~~~~~~aki~gavG~~~~~~a~~~L~~l~~~L~~~d~~~~~ 107 (334)
.+|+..++.++.+..++..++--|.+++.++..-- ..|....+ ...-+++..||.|+....+.+-+..-+
T Consensus 86 ~~~sv~~~~~~~l~~l~~~~~~~l~~c~~~lv~~~-~~~~v~~~---------~~~fe~~H~al~~v~r~vP~~~~~l~~ 155 (500)
T KOG2434|consen 86 HRGSVIEALLNLLISLAVTSGKFLSPCLSMLVSNL-SQPSVTEQ---------IEHFERAHAALKYILRLVPLAPSFLLP 155 (500)
T ss_pred CCchHHHHHHHHHHHHHHhCCchHHHHHHHHHHhC-Ccchhhhh---------HHHHHHHHHHHHHHHHHccCchhhHHH
Confidence 47888999999999999999999999999988777 56655541 233389999999998888887777777
Q ss_pred HHHHHHHHhhccCCCcccccccceeecccc
Q psy17028 108 VLLREATLLCSTYPVLCTDKMLAEVWQCSR 137 (334)
Q Consensus 108 ~Ll~Ei~~l~~~~p~ll~~~~~~~~r~~~~ 137 (334)
+|..+.-.+.+.++. +-.++....|++++
T Consensus 156 ~L~~~~p~~~k~~~~-~~~YvsNll~l~~y 184 (500)
T KOG2434|consen 156 ILAQVMPKKDKKDRT-LVTYVSNLLKLENY 184 (500)
T ss_pred HHHHHccccccchhh-HHHHHhHHHHHHhh
Confidence 777666665555543 22334444444444
No 128
>KOG1060|consensus
Probab=41.56 E-value=1.3e+02 Score=33.81 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=52.8
Q ss_pred hHHHHHhhcc-CchhhHHHHHHHHHHhhcCCchhhhch----------------------------------HHHHHhhh
Q psy17028 19 SLPQLCEYLA-TNSTILATMQIFLHLAEKRPQLLVDYV----------------------------------PKLKQANE 63 (334)
Q Consensus 19 ~vp~L~~~L~-~~~~~~~~l~il~~ia~~~p~~l~~~l----------------------------------~~~k~~~~ 63 (334)
.+-.|+..|. .+-.-+++|+-+.-||...|..|..|+ +.++--..
T Consensus 323 i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~ 402 (968)
T KOG1060|consen 323 IAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIK 402 (968)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHh
Confidence 4445555555 333445677777777777777777663 33332222
Q ss_pred cCc-hhHHHHHHHHHhhccCChhhHHHHHHHHHhhCCCCc
Q psy17028 64 GNA-NTLCVTVQVVAAVGRLNKDKAQDALNFILAHLPKAD 102 (334)
Q Consensus 64 ~~p-~~~~~~aki~gavG~~~~~~a~~~L~~l~~~L~~~d 102 (334)
..+ .+++.+.|.+|.-|.-..+.+-.||+.||..|.+-|
T Consensus 403 s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshd 442 (968)
T KOG1060|consen 403 SSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHD 442 (968)
T ss_pred cCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhccc
Confidence 223 245555555555555666899999999999999844
No 129
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=39.46 E-value=1.2e+02 Score=26.09 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=35.7
Q ss_pred EeCC-eeEEecCCCCCccceEEcCCeeEEE--ecCCCCCCCceEEEEeCC-eEEEEEcCCHHHHHH
Q psy17028 244 LSGA-HLSYKGSKEDKQETPIDVHRIRSVK--VSRGARNIPKAFEIFTGD-DSLILKPKNGKNAEQ 305 (334)
Q Consensus 244 L~~~-~L~Yk~~~~~~p~g~I~L~~~~sV~--~~~~~~~k~~~F~I~T~~-RTy~L~AdS~ee~~e 305 (334)
|-|+ .+-|+++..-..--.||=+.+..|. +.-..+..+ +|.|.|.+ .+|.|.+.+....-+
T Consensus 28 miGDkaFEFyn~~n~~dyIQIPW~eI~~V~a~V~fkgk~I~-RF~I~Tk~~G~f~Fsskd~k~~Lk 92 (118)
T PF06115_consen 28 MIGDKAFEFYNDRNVEDYIQIPWEEIDYVIASVSFKGKWIP-RFAIFTKKNGKFTFSSKDSKKVLK 92 (118)
T ss_pred EEcccceEeecCCChhhcEEeChhheeEEEEEEEECCCEEe-eEEEEECCCCEEEEEECChHHHHH
Confidence 4444 4546655433333445555555443 221112334 59999998 799999999887643
No 130
>PTZ00429 beta-adaptin; Provisional
Probab=39.12 E-value=1.7e+02 Score=32.46 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=43.7
Q ss_pred hHHHHHhhccC--chhhHHHHHHHHHHhhcCCchh---hhchHHH-HHhhhcCchhHHHHHHHHHhhccCChhhHHHHHH
Q psy17028 19 SLPQLCEYLAT--NSTILATMQIFLHLAEKRPQLL---VDYVPKL-KQANEGNANTLCVTVQVVAAVGRLNKDKAQDALN 92 (334)
Q Consensus 19 ~vp~L~~~L~~--~~~~~~~l~il~~ia~~~p~~l---~~~l~~~-k~~~~~~p~~~~~~aki~gavG~~~~~~a~~~L~ 92 (334)
.+|.|.+.|.| |+....++.+|.+|....|..+ ..++.++ ..+.+.+++.-..+-+++..-.-.+++.+.+.|+
T Consensus 180 ~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~ 259 (746)
T PTZ00429 180 FKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLT 259 (746)
T ss_pred hHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 34555555543 2333445555556655555422 2222221 1223344444443333333322334556666666
Q ss_pred HHHhhCCCCcchhhhHHHHHHHHhh
Q psy17028 93 FILAHLPKADRSSQSVLLREATLLC 117 (334)
Q Consensus 93 ~l~~~L~~~d~~~~~~Ll~Ei~~l~ 117 (334)
.+..+|.+ +.-+++|-=+|.++
T Consensus 260 ~l~~~Lq~---~N~AVVl~Aik~il 281 (746)
T PTZ00429 260 RVLPRMSH---QNPAVVMGAIKVVA 281 (746)
T ss_pred HHHHHhcC---CCHHHHHHHHHHHH
Confidence 66666554 33444444445444
No 131
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=38.45 E-value=1.2e+02 Score=26.32 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=21.6
Q ss_pred ceEEEEeCC-e-EEEEEc---CCHHHHHHHHHHHHH
Q psy17028 282 KAFEIFTGD-D-SLILKP---KNGKNAEQWVQCLSV 312 (334)
Q Consensus 282 ~~F~I~T~~-R-Ty~L~A---dS~ee~~eWI~AI~~ 312 (334)
..|.|.-.+ . .|-++| .|...+.+||+.|+.
T Consensus 76 ~~~~vheq~dGti~Amc~tg~~~~~sL~~WI~~Lq~ 111 (126)
T PF14784_consen 76 KKFSVHEQEDGTIFAMCMTGTSDKDSLLSWIRGLQE 111 (126)
T ss_pred CCcceeEeccceEEEEEeccCCCHHHHHHHHHHHHh
Confidence 456664433 3 465665 488899999999987
No 132
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=37.52 E-value=2.7e+02 Score=29.01 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=73.8
Q ss_pred HhhHHHHHhhccCchh--hHHHHHHHHHHhhcCCchhhhc-----hHHHHHhhhc-CchhHHHHHHHHHhhccCChhhHH
Q psy17028 17 EASLPQLCEYLATNST--ILATMQIFLHLAEKRPQLLVDY-----VPKLKQANEG-NANTLCVTVQVVAAVGRLNKDKAQ 88 (334)
Q Consensus 17 ~~~vp~L~~~L~~~~~--~~~~l~il~~ia~~~p~~l~~~-----l~~~k~~~~~-~p~~~~~~aki~gavG~~~~~~a~ 88 (334)
...+|.++.+|.++.. ...+.++|.+++.+.+.. ... ++.|+....+ +...-..+-.++..|+..|++-+.
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3578999999997755 556999999999876654 223 7788887777 777778888888889999998777
Q ss_pred HH-----HHHHHhhCCCCcchhhhHHHHHHHHhhc
Q psy17028 89 DA-----LNFILAHLPKADRSSQSVLLREATLLCS 118 (334)
Q Consensus 89 ~~-----L~~l~~~L~~~d~~~~~~Ll~Ei~~l~~ 118 (334)
.| |+.++..|.+=|--.+-.-+.=++.|+.
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 66 4566777777554445444444666665
No 133
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=35.20 E-value=38 Score=29.80 Aligned_cols=36 Identities=25% Similarity=0.087 Sum_probs=24.9
Q ss_pred HHHHHhhHHHHHhhcc-CchhhHHHHHHHHHHhhcCC
Q psy17028 13 YKLLEASLPQLCEYLA-TNSTILATMQIFLHLAEKRP 48 (334)
Q Consensus 13 ~~~l~~~vp~L~~~L~-~~~~~~~~l~il~~ia~~~p 48 (334)
.+-|..++||||..|+ ++.+...+-..|++-|..+|
T Consensus 100 ~~~l~~ylpQLVQaLkye~~~~~~L~~fLl~ra~~s~ 136 (152)
T cd00864 100 DDELLLYLPQLVQALKYEPYLDSYLARFLLERALKSQ 136 (152)
T ss_pred HHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCH
Confidence 4567778888888888 44445666667777777666
No 134
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=34.68 E-value=17 Score=26.80 Aligned_cols=19 Identities=26% Similarity=0.826 Sum_probs=16.7
Q ss_pred cCCceeEEEEEeCCeeE-Ee
Q psy17028 234 FKRWRTRYFTLSGAHLS-YK 252 (334)
Q Consensus 234 ~K~WKrRwFVL~~~~L~-Yk 252 (334)
++.|.++|.++.++.|. ||
T Consensus 27 Vr~wEKKWVtv~dtslriyK 46 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYK 46 (52)
T ss_pred HHHHhhceEEeccceEEEEE
Confidence 47899999999999996 76
No 135
>KOG1729|consensus
Probab=34.58 E-value=20 Score=35.12 Aligned_cols=97 Identities=19% Similarity=0.304 Sum_probs=60.7
Q ss_pred ceEEEEeccccCCCcccCCceeEEEEEeCCeeEEecCCCC----CccceEEcCCeeEEEecCCCCCCCceEEEEeCCeEE
Q psy17028 218 PVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKED----KQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSL 293 (334)
Q Consensus 218 vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~~~~----~p~g~I~L~~~~sV~~~~~~~~k~~~F~I~T~~RTy 293 (334)
.+.+|-+ .|..+ |.=+.|+|.|.++.+.|-..-.. .....+++..+ +.+...++...+++-.|.+..+.+
T Consensus 46 ~~~q~~~-~k~~r----k~~q~r~~~l~~D~~~~~~~~~~~~~~~~~~~~~le~~-~~~~~~~~~~~~~~~~~~S~~ks~ 119 (288)
T KOG1729|consen 46 LCRQGTL-VKRCR----KKLQSRSFFLFNDILVYGNIVSDNKLLNKNHIIPLEGV-SQESRSDNERVRNGWQILSALKSF 119 (288)
T ss_pred hhhhhhh-HHHHh----cccccccccccccchhhcccccCHHHHhHHhcccccch-hhhhhccccccccchhhhcccchh
Confidence 3556666 44433 22589999999998876553111 12233444222 122111222334478889999999
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHhhccc
Q psy17028 294 ILKPKNGKNAEQWVQCLSVVVAHSQAK 320 (334)
Q Consensus 294 ~L~AdS~ee~~eWI~AI~~aIa~~~~k 320 (334)
.+.|.+..++.+|+..|..++...-.+
T Consensus 120 ~~~~as~~ek~e~~~~i~~~~~~~l~~ 146 (288)
T KOG1729|consen 120 TVLAASQTEKNEWQNHITECVEDLLSK 146 (288)
T ss_pred hhhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887654333
No 136
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=34.20 E-value=89 Score=27.95 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHhhc----CCchhhhchHHHHHh-------hhcCchhHHHHHHHHHhhccCChhhHHHHHHHHHhhCCC
Q psy17028 32 TILATMQIFLHLAEK----RPQLLVDYVPKLKQA-------NEGNANTLCVTVQVVAAVGRLNKDKAQDALNFILAHLPK 100 (334)
Q Consensus 32 ~~~~~l~il~~ia~~----~p~~l~~~l~~~k~~-------~~~~p~~~~~~aki~gavG~~~~~~a~~~L~~l~~~L~~ 100 (334)
....+|.+|...... ......+||-+.+.. .+..++..+.++..+...|..+.+.++.++.||.+....
T Consensus 142 ~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~ 221 (300)
T cd00688 142 LTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGFGPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRP 221 (300)
T ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCcCCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCC
Confidence 344466666554433 224555666555442 246788888889999999988788999999999976544
No 137
>KOG1264|consensus
Probab=33.64 E-value=40 Score=37.80 Aligned_cols=35 Identities=34% Similarity=0.547 Sum_probs=30.7
Q ss_pred CceEEEEeccccCCCcccCCceeEEEEEeCCeeEEecC
Q psy17028 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGS 254 (334)
Q Consensus 217 ~vlkeGwLkkK~G~~~~~K~WKrRwFVL~~~~L~Yk~~ 254 (334)
+.+++|.|+.|...- +.|.+-||||.+..|+|.++
T Consensus 474 nsvk~GiLy~kd~vd---heWt~h~fvlt~~kl~ys~e 508 (1267)
T KOG1264|consen 474 NSVKQGILYMKDPVD---HEWTRHYFVLTDAKLSYSDE 508 (1267)
T ss_pred hhhhcceEEEecCCC---CceeeeEEEEecceeEeehh
Confidence 568999998888664 88999999999999999874
No 138
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=33.03 E-value=49 Score=30.02 Aligned_cols=41 Identities=24% Similarity=0.160 Sum_probs=31.8
Q ss_pred HHHHHhhHHHHHhhcc-CchhhHHHHHHHHHHhhcCCchhhhc
Q psy17028 13 YKLLEASLPQLCEYLA-TNSTILATMQIFLHLAEKRPQLLVDY 54 (334)
Q Consensus 13 ~~~l~~~vp~L~~~L~-~~~~~~~~l~il~~ia~~~p~~l~~~ 54 (334)
.+.|..++||||..|+ ++.+...+-..|++-|..+| .++-+
T Consensus 106 d~~l~~yLpQLVQaLr~e~~~~s~L~~fLl~ra~~s~-~ia~~ 147 (184)
T PF00613_consen 106 DEELLFYLPQLVQALRYEPYHDSPLARFLLRRALKSP-RIAHQ 147 (184)
T ss_dssp HHHHHHHHHHHHHHGGGSSSSS-HHHHHHHHHHHHSH-HHHHH
T ss_pred chHHHHHHHHHHHHheeccccccHHHHHHHHHHHhCH-HHHHH
Confidence 4678889999999998 77777888888888888888 44444
No 139
>PF07560 DUF1539: Domain of Unknown Function (DUF1539); InterPro: IPR011436 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR013044 from INTERPRO.
Probab=32.19 E-value=1.1e+02 Score=26.62 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=49.2
Q ss_pred HHhhhcCchhHHHHHHHHHhhccCChhhHHHHHHHHHhhCCCCcchhhhHHHHHHHHhh
Q psy17028 59 KQANEGNANTLCVTVQVVAAVGRLNKDKAQDALNFILAHLPKADRSSQSVLLREATLLC 117 (334)
Q Consensus 59 k~~~~~~p~~~~~~aki~gavG~~~~~~a~~~L~~l~~~L~~~d~~~~~~Ll~Ei~~l~ 117 (334)
...++++|.++-+.-+++- =..+++||=+++|.|+.++-..+-..+.-+.-+|+..|-
T Consensus 59 ~~~~~l~~~~m~~l~~aL~-dp~Is~erK~~~l~yIaSya~~c~pTW~evi~rel~~iy 116 (126)
T PF07560_consen 59 HPDQSLFRSTMHQLIKALQ-DPTISKERKREALNYIASYADACPPTWVEVIFRELNAIY 116 (126)
T ss_pred ChhHHHHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 4567788888877766665 468899999999999999999999999999999987764
No 140
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=31.31 E-value=64 Score=30.94 Aligned_cols=111 Identities=10% Similarity=0.163 Sum_probs=70.4
Q ss_pred hhHHHHHhhccCch----------hhHHHHHHHHHHhhcCCchhhhchHHHHHhhhcCchhHHHHHHHHHhhccCChhhH
Q psy17028 18 ASLPQLCEYLATNS----------TILATMQIFLHLAEKRPQLLVDYVPKLKQANEGNANTLCVTVQVVAAVGRLNKDKA 87 (334)
Q Consensus 18 ~~vp~L~~~L~~~~----------~~~~~l~il~~ia~~~p~~l~~~l~~~k~~~~~~p~~~~~~aki~gavG~~~~~~a 87 (334)
.+.|.++..++-+. ....+-.||.-+++.+++.+.+++-. ...+.+.=+.|.+.++.+.+.++.+=
T Consensus 73 ~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~----~~~~~yvR~aa~~aL~~l~~~~~~~R 148 (249)
T PF06685_consen 73 RALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGDIEPLKELIED----PDADEYVRMAAISALAFLVHEGPISR 148 (249)
T ss_pred hhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 36777777775332 33446678889999999999888532 34466666777777777766666655
Q ss_pred HHHHHHHHhhCCC-CcchhhhHHHHHHHHhhccCCCccccccccee
Q psy17028 88 QDALNFILAHLPK-ADRSSQSVLLREATLLCSTYPVLCTDKMLAEV 132 (334)
Q Consensus 88 ~~~L~~l~~~L~~-~d~~~~~~Ll~Ei~~l~~~~p~ll~~~~~~~~ 132 (334)
.++..|+-+.+.. .+..-..+.=.=|-++||=||.=+-+.++..|
T Consensus 149 e~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f 194 (249)
T PF06685_consen 149 EEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAF 194 (249)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHH
Confidence 6666666555544 22222222222246889989986666666555
No 141
>KOG0169|consensus
Probab=31.01 E-value=30 Score=38.02 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=52.7
Q ss_pred eeEEEEEeCCeeE-EecC-CCCCccceEEcCCeeEEEec---C------CCCCCCceEEEEeCCe--EEEEEcCCHHHHH
Q psy17028 238 RTRYFTLSGAHLS-YKGS-KEDKQETPIDVHRIRSVKVS---R------GARNIPKAFEIFTGDD--SLILKPKNGKNAE 304 (334)
Q Consensus 238 KrRwFVL~~~~L~-Yk~~-~~~~p~g~I~L~~~~sV~~~---~------~~~~k~~~F~I~T~~R--Ty~L~AdS~ee~~ 304 (334)
..|+|.|..+.+. +... ......-.+.+..+..|... + ++.....+|.|.+.++ +.-+.|.+.++++
T Consensus 33 ~~r~~~l~~d~~~~r~~~~~~~~~~~~~~i~~i~~vr~g~~t~~lr~~~~~~~~~~~fsi~~~~~~e~ldl~a~s~~~a~ 112 (746)
T KOG0169|consen 33 FNRLFKLDNDGSTVRWSRTNRDPNKAKVSISEIEEVRSGKQTENLRSLARDLPEDRCFSIIFKDRYESLDLIANSKEDAN 112 (746)
T ss_pred HHhhhhhhhccceEEeccccCCchhcccchhhhHHHhccccchhhHHHHHhcCcceeEEEEeccccccccccCCCHHHHH
Confidence 4688899888775 4432 21111122666555444321 1 1123457899988764 7889999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy17028 305 QWVQCLSVVVAHSQ 318 (334)
Q Consensus 305 eWI~AI~~aIa~~~ 318 (334)
.||.-|+..+..+.
T Consensus 113 ~wV~gl~~l~s~~~ 126 (746)
T KOG0169|consen 113 IWVSGLRKLISRSK 126 (746)
T ss_pred HHhhhHHHHHhccc
Confidence 99999999887643
No 142
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=27.87 E-value=2e+02 Score=25.33 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=54.1
Q ss_pred HHHHhhccCc--hhhHHHHHHHHHHhhc-CCchhhhchHHHHHhhhcC---chhHHHHHHHHHhhccCChhhHHHHHHHH
Q psy17028 21 PQLCEYLATN--STILATMQIFLHLAEK-RPQLLVDYVPKLKQANEGN---ANTLCVTVQVVAAVGRLNKDKAQDALNFI 94 (334)
Q Consensus 21 p~L~~~L~~~--~~~~~~l~il~~ia~~-~p~~l~~~l~~~k~~~~~~---p~~~~~~aki~gavG~~~~~~a~~~L~~l 94 (334)
..++..|.|+ .-...+-..|.+++.. .|..+..++|.+=-.-... |.. |..++++=+.-+.||
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~-----------~~~~~~~~~~I~~fl 134 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVY-----------GPLSREKRKKIYKFL 134 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccc-----------cccCHHHHHHHHHHH
Confidence 6677777766 5778899999999999 8999988887765543332 222 778899999999999
Q ss_pred HhhCCC
Q psy17028 95 LAHLPK 100 (334)
Q Consensus 95 ~~~L~~ 100 (334)
++.+.+
T Consensus 135 l~~i~~ 140 (178)
T PF12717_consen 135 LDFIDK 140 (178)
T ss_pred HHHcCc
Confidence 999998
No 143
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=27.50 E-value=1.3e+02 Score=26.74 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=43.7
Q ss_pred HHHHHhhHHHHHhhccCchhhHHHHHHHHHHhhcCCchhhhchHHHHHhhhcCchhHHHHH-HHHHhh
Q psy17028 13 YKLLEASLPQLCEYLATNSTILATMQIFLHLAEKRPQLLVDYVPKLKQANEGNANTLCVTV-QVVAAV 79 (334)
Q Consensus 13 ~~~l~~~vp~L~~~L~~~~~~~~~l~il~~ia~~~p~~l~~~l~~~k~~~~~~p~~~~~~a-ki~gav 79 (334)
.++|+.++..++..-..|++ ...-.|.+|..+.|..+.++..++++.-+-.+.+=+.+| +++.||
T Consensus 54 ~~Ile~l~~rI~~~s~~~~~--~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al 119 (158)
T PF14676_consen 54 SEILEQLLNRIVTKSSSPSS--QYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRAL 119 (158)
T ss_dssp HHHHHHHHHHHHH--SS--H--HHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchh--HHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46788888888887777554 457889999999999999999999999888776655443 344444
No 144
>PF02831 gpW: gpW; InterPro: IPR004174 GpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking GpW contain DNA-filled heads, and active tails, but no infectious virions. GpW is required for the addition of GpFII to the head, which is, in turn, required for the attachment of tails. Since GpFII and tails are known to be attached at the connector, GpW is also likely to assemble at this site. The addition of GpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that GpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in GpW (its calculated pI is 10.8) is consistent with a role in DNA interaction [].; GO: 0019067 viral assembly, maturation, egress, and release; PDB: 2L6Q_A 2L6R_A 1HYW_A.
Probab=27.19 E-value=1.2e+02 Score=23.54 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=30.3
Q ss_pred EEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhccccCC
Q psy17028 284 FEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMP 323 (334)
Q Consensus 284 F~I~T~~RTy~L~AdS~ee~~eWI~AI~~aIa~~~~ke~~ 323 (334)
-.+.-++|+..+.+.|..+...||..|+..+.....+..|
T Consensus 24 vsv~~dgrsV~Yt~a~i~~L~~yI~~L~~~Lg~~~rrR~p 63 (68)
T PF02831_consen 24 VSVQGDGRSVTYTQANIGDLRAYIQQLEAQLGIVGRRRRP 63 (68)
T ss_dssp EEEEETTEEEEEEGGGHHHHHHHHHHHHHHTTST-SS---
T ss_pred eEeecCCeEEEEecCCHHHHHHHHHHHHHHhCcCCCCCCC
Confidence 3466677999999999999999999999998765433333
No 145
>KOG2171|consensus
Probab=26.21 E-value=1.8e+02 Score=33.57 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=81.8
Q ss_pred hHHHHHhhcc--CchhhHHHHHHHHHHhhcCCchhhhchHHHHHhhhc------CchhHHHHHHHHHhhccCCh---h--
Q psy17028 19 SLPQLCEYLA--TNSTILATMQIFLHLAEKRPQLLVDYVPKLKQANEG------NANTLCVTVQVVAAVGRLNK---D-- 85 (334)
Q Consensus 19 ~vp~L~~~L~--~~~~~~~~l~il~~ia~~~p~~l~~~l~~~k~~~~~------~p~~~~~~aki~gavG~~~~---~-- 85 (334)
-+|+|+..++ +++++++++-||--+.+.-+..+..|++.++....+ .| +-..+++.+||+-...+ +
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~ 197 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEV 197 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHH
Confidence 4677888887 678899999999999999999999999888876543 34 66677888888777664 2
Q ss_pred -hHHHHH----HHHHhhCCCCcchhhhHHHHHHHHhhccCCCcccccccceeecc
Q psy17028 86 -KAQDAL----NFILAHLPKADRSSQSVLLREATLLCSTYPVLCTDKMLAEVWQC 135 (334)
Q Consensus 86 -~a~~~L----~~l~~~L~~~d~~~~~~Ll~Ei~~l~~~~p~ll~~~~~~~~r~~ 135 (334)
+.+.-| +-+.+-+..-|-..---.|.....|....|.+|++.+.++.--+
T Consensus 198 ~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~ 252 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFS 252 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 333322 22223333333323345667788899999999999988765433
No 146
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=26.18 E-value=2e+02 Score=22.12 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=26.8
Q ss_pred HHH-hhHHHHHhhccC--chhhHHHHHHHHHHhhcCC
Q psy17028 15 LLE-ASLPQLCEYLAT--NSTILATMQIFLHLAEKRP 48 (334)
Q Consensus 15 ~l~-~~vp~L~~~L~~--~~~~~~~l~il~~ia~~~p 48 (334)
+++ ..+|.|+.+|.| +.....++.+|-+++...|
T Consensus 45 ~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 45 VVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 444 688899999986 4666678999999998776
No 147
>KOG2274|consensus
Probab=25.94 E-value=1.4e+02 Score=33.98 Aligned_cols=79 Identities=14% Similarity=0.189 Sum_probs=57.3
Q ss_pred CcchHHHHHhhHHHHHhhccCch------hhHHHHHHHHHHhhcCCchhhhchHHHHHhhhcCchhHHHHHHHHHhhccC
Q psy17028 9 LCGGYKLLEASLPQLCEYLATNS------TILATMQIFLHLAEKRPQLLVDYVPKLKQANEGNANTLCVTVQVVAAVGRL 82 (334)
Q Consensus 9 ~~~~~~~l~~~vp~L~~~L~~~~------~~~~~l~il~~ia~~~p~~l~~~l~~~k~~~~~~p~~~~~~aki~gavG~~ 82 (334)
-|-|| +-+.|||.|++-|.-+. ...+++-+|.-+-.+.|..|..-+ +...||. +|||. =|.
T Consensus 605 ~~~g~-m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l-----~~~~Fpa----Vak~t---lHs 671 (1005)
T KOG2274|consen 605 ANYGP-MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLL-----ICYAFPA----VAKIT---LHS 671 (1005)
T ss_pred Hhhcc-hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHH-----HHHHhHH----hHhhe---eec
Confidence 47788 78999999999887544 566788888888899999866544 3444554 45665 455
Q ss_pred Ch----hhHHHHHHHHHhh----CCC
Q psy17028 83 NK----DKAQDALNFILAH----LPK 100 (334)
Q Consensus 83 ~~----~~a~~~L~~l~~~----L~~ 100 (334)
+. .-|.+||.++++. +.+
T Consensus 672 dD~~tlQ~~~EcLra~Is~~~eq~~t 697 (1005)
T KOG2274|consen 672 DDHETLQNATECLRALISVTLEQLLT 697 (1005)
T ss_pred CChHHHHhHHHHHHHHHhcCHHHHHh
Confidence 55 3689999998854 665
No 148
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=25.76 E-value=2e+02 Score=21.93 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=43.3
Q ss_pred HHHHhhHHHHHhhccCchhhHHHHHHHHHHhhcCCchhhhchHHHHHh-hhcCchhHHHHHHHHHhhc
Q psy17028 14 KLLEASLPQLCEYLATNSTILATMQIFLHLAEKRPQLLVDYVPKLKQA-NEGNANTLCVTVQVVAAVG 80 (334)
Q Consensus 14 ~~l~~~vp~L~~~L~~~~~~~~~l~il~~ia~~~p~~l~~~l~~~k~~-~~~~p~~~~~~aki~gavG 80 (334)
++|+..|=+++..-+=....+.+|++|.+++..+=..+..-+-...+. +.+.|. +..+...+--.|
T Consensus 6 ~~l~~~va~il~~~GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~-~~Dv~~al~~~g 72 (77)
T PF07524_consen 6 SLLRRSVAQILKHAGFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPN-LQDVEQALEEMG 72 (77)
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHhC
Confidence 578889999999999888888999999999877655544444333332 233343 444444444444
No 149
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.21 E-value=2e+02 Score=24.72 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=23.7
Q ss_pred CceEEEEeC-CeEEEEEcCCHHHHHHHHH
Q psy17028 281 PKAFEIFTG-DDSLILKPKNGKNAEQWVQ 308 (334)
Q Consensus 281 ~~~F~I~T~-~RTy~L~AdS~ee~~eWI~ 308 (334)
...|+|.|. +.+|.|...+....-+|+.
T Consensus 66 ~~~f~i~td~~gk~~FaSkdsg~iLk~ir 94 (122)
T COG4687 66 GRQFSIFTDTQGKVRFASKDSGKILKKIR 94 (122)
T ss_pred cceEEEEEcCCceEEEEeCCchhHHHHHH
Confidence 347999999 5699999999999888875
No 150
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=25.12 E-value=1.9e+02 Score=22.73 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=21.0
Q ss_pred CceEEEEeCCeEEEEEcCCHHHHHHHHHHHH
Q psy17028 281 PKAFEIFTGDDSLILKPKNGKNAEQWVQCLS 311 (334)
Q Consensus 281 ~~~F~I~T~~RTy~L~AdS~ee~~eWI~AI~ 311 (334)
.....|.|.+++|+|..+++++ .+++|+
T Consensus 70 ~~~i~I~t~~~~y~isp~~~~~---fi~~l~ 97 (100)
T PF10882_consen 70 KNVILIKTKDKTYVISPEDPEE---FIEALK 97 (100)
T ss_pred CCEEEEEECCceEEEcCCCHHH---HHHHHH
Confidence 4688999999999997777655 455554
No 151
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=24.97 E-value=1.5e+02 Score=33.12 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=73.6
Q ss_pred cccCCCcchH-HHHHhhHHHHHhhccCchh---------hHHHHHHHHHHhhcCCchhhhchH-HHHHhh----------
Q psy17028 4 HYHPNLCGGY-KLLEASLPQLCEYLATNST---------ILATMQIFLHLAEKRPQLLVDYVP-KLKQAN---------- 62 (334)
Q Consensus 4 ~~~~~~~~~~-~~l~~~vp~L~~~L~~~~~---------~~~~l~il~~ia~~~p~~l~~~l~-~~k~~~---------- 62 (334)
-|||.|-.|- +-|......|+.|+.+-.. -+.++..|.+||+..|...+.++- .|+++.
T Consensus 453 ~~hpsLa~~NK~Kl~~f~~vLlq~i~~la~~~~~~~~~~ld~L~~~L~~Laq~~p~~~a~~~r~~L~~~~~~~~~~~l~~ 532 (840)
T PF04147_consen 453 CYHPSLAEGNKEKLQVFFGVLLQHILYLASQDSPPPFEVLDSLIPHLYDLAQKYPEEAAECFREVLKEMQKRFRKGALKP 532 (840)
T ss_pred hCCCCCCcchHHHHHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 5999997665 7788888888777653222 245778888999999998888732 233331
Q ss_pred --hcCchhHHH-HHHHHHhhccCChhhH---HHHHHHHHhhCCCC---------cchhhhHHHHHHHHhhccCC
Q psy17028 63 --EGNANTLCV-TVQVVAAVGRLNKDKA---QDALNFILAHLPKA---------DRSSQSVLLREATLLCSTYP 121 (334)
Q Consensus 63 --~~~p~~~~~-~aki~gavG~~~~~~a---~~~L~~l~~~L~~~---------d~~~~~~Ll~Ei~~l~~~~p 121 (334)
.++|.+=-+ .=+++|.|=-+|-=+= -=||.|+-+.|..+ -..+...|++|..++..+|-
T Consensus 533 ~~~~~P~l~~Lvllklv~~lFPTSD~~HpVVTPalllm~~~L~q~~v~s~~di~~GlfL~~l~l~y~~~SKR~v 606 (840)
T PF04147_consen 533 KERSWPSLSDLVLLKLVGTLFPTSDFRHPVVTPALLLMSEYLSQCRVRSLRDIASGLFLCTLLLEYQSLSKRFV 606 (840)
T ss_pred cCCCCCChhHHHHHHHHHHhcCcccccCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 123433222 2355555544444322 22577877877753 23456678888888888875
No 152
>KOG2137|consensus
Probab=24.38 E-value=2.6e+02 Score=30.85 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=87.7
Q ss_pred CcchHHHHHhhHHHHHhhccCchhhHHHHHHHHHHhhcCCchh--hhchHHHHHhhhc-Cc--hhHHHHHHHHHhhccCC
Q psy17028 9 LCGGYKLLEASLPQLCEYLATNSTILATMQIFLHLAEKRPQLL--VDYVPKLKQANEG-NA--NTLCVTVQVVAAVGRLN 83 (334)
Q Consensus 9 ~~~~~~~l~~~vp~L~~~L~~~~~~~~~l~il~~ia~~~p~~l--~~~l~~~k~~~~~-~p--~~~~~~aki~gavG~~~ 83 (334)
+--+. ...+.+|-|++.|.+...-+.+|.+++.|++..+..= -..+|.|+-+..+ -| .+++..=+.--..-++.
T Consensus 304 fp~rv-~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~ 382 (700)
T KOG2137|consen 304 FPARV-LFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP 382 (700)
T ss_pred CCHHH-HHHhhhhHHHHHhccccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC
Confidence 33344 6678999999999999999999999999999999883 3448999988884 22 24555556656667777
Q ss_pred hh-hHHHHHHHHHhhCCCCcchhhhHHHHHHHHhhccCC
Q psy17028 84 KD-KAQDALNFILAHLPKADRSSQSVLLREATLLCSTYP 121 (334)
Q Consensus 84 ~~-~a~~~L~~l~~~L~~~d~~~~~~Ll~Ei~~l~~~~p 121 (334)
.| .=..+|..|...+.+-|..-|...|.-+..+-+--+
T Consensus 383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD 421 (700)
T KOG2137|consen 383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID 421 (700)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc
Confidence 75 667789999999999999999999988777665443
No 153
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=24.24 E-value=64 Score=29.02 Aligned_cols=83 Identities=11% Similarity=0.079 Sum_probs=54.5
Q ss_pred hchHHHHHhhh-cCchhHHHHHHHHHhhccCChhhHHHHHHHHHhhCCCCcchhhhHHHHHHHHhhccCCCcccccccce
Q psy17028 53 DYVPKLKQANE-GNANTLCVTVQVVAAVGRLNKDKAQDALNFILAHLPKADRSSQSVLLREATLLCSTYPVLCTDKMLAE 131 (334)
Q Consensus 53 ~~l~~~k~~~~-~~p~~~~~~aki~gavG~~~~~~a~~~L~~l~~~L~~~d~~~~~~Ll~Ei~~l~~~~p~ll~~~~~~~ 131 (334)
.||+.+-+... .++..=-.|.++++.|=+-+=-.+.+|+-+|+...+..+-.-.+.-...-+.|+++||+++..+..+.
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~g 87 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEG 87 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555444443 33444444556666665555556677888888877777777777777788888888888877776665
Q ss_pred eecc
Q psy17028 132 VWQC 135 (334)
Q Consensus 132 ~r~~ 135 (334)
+|+.
T Consensus 88 i~~a 91 (187)
T PF12830_consen 88 IRLA 91 (187)
T ss_pred HHHH
Confidence 5444
No 154
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=23.93 E-value=2.4e+02 Score=30.57 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=41.8
Q ss_pred hccCChhhHHHHHHHHHhhCCCCcchhhhHHHHHHHHhhccCCCccc
Q psy17028 79 VGRLNKDKAQDALNFILAHLPKADRSSQSVLLREATLLCSTYPVLCT 125 (334)
Q Consensus 79 vG~~~~~~a~~~L~~l~~~L~~~d~~~~~~Ll~Ei~~l~~~~p~ll~ 125 (334)
+|..+.+.-++||.-+.+-+.-|+-.-.-+.+-|.++|-..|+-+--
T Consensus 643 ~~y~d~e~~k~tl~pI~k~~~~m~~~~~d~~~~~~~~lkeiYwD~~~ 689 (742)
T COG5173 643 SGYGDPEDVKTTLSPILKIIPLMDTRNDDLFIVEVKSLKEIYWDIKK 689 (742)
T ss_pred HhhCCHHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHhccchH
Confidence 56678899999999999999999999999999999999999996433
No 155
>PLN02204 diacylglycerol kinase
Probab=23.88 E-value=4.2e+02 Score=28.80 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=23.6
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy17028 292 SLILKPKNGKNAEQWVQCLSVVVAHS 317 (334)
Q Consensus 292 Ty~L~AdS~ee~~eWI~AI~~aIa~~ 317 (334)
.|.|...+....+.|++.|+..+...
T Consensus 130 ~~~f~~~d~~~~~~w~~~l~~~l~~~ 155 (601)
T PLN02204 130 VYTFGHKDLQTCQSWVDRLNASLNKE 155 (601)
T ss_pred EEeecCCCHHHHHHHHHHHHHHHhhc
Confidence 49999999999999999999988753
No 156
>KOG0689|consensus
Probab=23.59 E-value=79 Score=32.94 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=29.1
Q ss_pred CCceEEEEeCCe----EEEEEcCCHHHHHHHHHHHHHHHH
Q psy17028 280 IPKAFEIFTGDD----SLILKPKNGKNAEQWVQCLSVVVA 315 (334)
Q Consensus 280 k~~~F~I~T~~R----Ty~L~AdS~ee~~eWI~AI~~aIa 315 (334)
-+..|.|....+ +|.++|.|.++..+|+++|...+-
T Consensus 322 s~~rF~i~~r~~~~~~~~vlqa~s~~~k~~W~~~i~~~l~ 361 (448)
T KOG0689|consen 322 SASRFEIWFRGRKKREAYVLQAGSKEIKYAWTRAISSLLW 361 (448)
T ss_pred CCcchhhhhhcccccceeEEeeCCHHHHHHHHHHHHHHHH
Confidence 356788865554 699999999999999999977653
No 157
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=23.40 E-value=70 Score=29.13 Aligned_cols=36 Identities=25% Similarity=0.050 Sum_probs=27.1
Q ss_pred HHHHHhhHHHHHhhcc-CchhhHHHHHHHHHHhhcCC
Q psy17028 13 YKLLEASLPQLCEYLA-TNSTILATMQIFLHLAEKRP 48 (334)
Q Consensus 13 ~~~l~~~vp~L~~~L~-~~~~~~~~l~il~~ia~~~p 48 (334)
.+.|..++||||..|+ ++.+...+-..|++-|..+|
T Consensus 105 d~~l~~yLpQLVQaLr~E~~~~~~L~~fLl~ra~~s~ 141 (184)
T smart00145 105 DEELLLYLLQLVQALKYEPYLDSALARFLLERALKNQ 141 (184)
T ss_pred HHHHHHHHHHHHHHHHcccccccHHHHHHHHHHhhCH
Confidence 4567778888888888 55566667777788877776
No 158
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=23.11 E-value=2.1e+02 Score=24.88 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=23.4
Q ss_pred HHHHhhHHHHHhhccCchhhHHHH---HHHHHH
Q psy17028 14 KLLEASLPQLCEYLATNSTILATM---QIFLHL 43 (334)
Q Consensus 14 ~~l~~~vp~L~~~L~~~~~~~~~l---~il~~i 43 (334)
+-|++.+-+++.|+.||.+....+ ++++|+
T Consensus 74 ~~L~piL~Fl~k~i~~pr~~~~l~~v~~~ildi 106 (148)
T PF09384_consen 74 ESLEPILKFLIKNITDPRYTRILVDVANIILDI 106 (148)
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHH
Confidence 467888999999999999998844 444554
No 159
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=22.68 E-value=2.5e+02 Score=21.61 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=45.3
Q ss_pred HHHHhhHHHHHhhccCchhhHHHHHHHHHHhhcCCchhhhchHHHHHhh-hcCchhHHHHHHHHHhh
Q psy17028 14 KLLEASLPQLCEYLATNSTILATMQIFLHLAEKRPQLLVDYVPKLKQAN-EGNANTLCVTVQVVAAV 79 (334)
Q Consensus 14 ~~l~~~vp~L~~~L~~~~~~~~~l~il~~ia~~~p~~l~~~l~~~k~~~-~~~p~~~~~~aki~gav 79 (334)
.+|+..|=+++..-+=...++.++..|.++.+.+-..+..-.-..-+.+ .+.|. +..+-+.+.-.
T Consensus 6 ~ll~~~Vaqil~~~Gf~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~-~~Dv~~Al~~~ 71 (77)
T smart00576 6 ALLRIAVAQILESAGFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPN-LGDVVLALENL 71 (77)
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHh
Confidence 5788899999999998889999999999999887766666655544433 33333 44444443333
No 160
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=21.89 E-value=1.2e+02 Score=23.67 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=42.4
Q ss_pred CchhhHHHHHHHHHHhhcCC-chh--hhchHHHHHhh----------hcCchhHHHHHHHHHhhccCCh-hhHHHHHHHH
Q psy17028 29 TNSTILATMQIFLHLAEKRP-QLL--VDYVPKLKQAN----------EGNANTLCVTVQVVAAVGRLNK-DKAQDALNFI 94 (334)
Q Consensus 29 ~~~~~~~~l~il~~ia~~~p-~~l--~~~l~~~k~~~----------~~~p~~~~~~aki~gavG~~~~-~~a~~~L~~l 94 (334)
++.....++..|..+-...+ ... ++||-..+..- ..+.+....+...+.+.|.-.. +..+.+++||
T Consensus 22 ~~~~T~~al~aL~~~g~~~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~~~~~~~~a~~~l 101 (113)
T PF13249_consen 22 DVWDTAFALLALAALGEEPDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRPDDEEAVRKAVDWL 101 (113)
T ss_dssp EHHHHHHHHHHHHHHTSHHCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GGCHTTHCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 34445566777776655555 446 78887766621 1223344556666777777774 7789999999
Q ss_pred Hhh
Q psy17028 95 LAH 97 (334)
Q Consensus 95 ~~~ 97 (334)
+++
T Consensus 102 ~~~ 104 (113)
T PF13249_consen 102 LSC 104 (113)
T ss_dssp HHT
T ss_pred HHh
Confidence 973
No 161
>PF08253 Leader_Erm: Erm Leader peptide ; InterPro: IPR013204 These short proteins are leader peptides (15-19 amino acids) of erm genes that code for resistance determinants in Staphylococcus aureus [].
Probab=21.86 E-value=38 Score=19.93 Aligned_cols=7 Identities=57% Similarity=1.326 Sum_probs=5.6
Q ss_pred ccccCCC
Q psy17028 3 IHYHPNL 9 (334)
Q Consensus 3 ~~~~~~~ 9 (334)
.||+||-
T Consensus 12 vhYqpN~ 18 (19)
T PF08253_consen 12 VHYQPNQ 18 (19)
T ss_pred eccCCCC
Confidence 5999983
No 162
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=21.46 E-value=1.8e+02 Score=27.02 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=32.2
Q ss_pred HhhhcCchhHHHHHHHHHhhccCChhhHHHHHHHHHhhCCC
Q psy17028 60 QANEGNANTLCVTVQVVAAVGRLNKDKAQDALNFILAHLPK 100 (334)
Q Consensus 60 ~~~~~~p~~~~~~aki~gavG~~~~~~a~~~L~~l~~~L~~ 100 (334)
....+.|+.++.+|=.+...| +.++++++|+-|.+....
T Consensus 126 ~~~~~~~Y~lAl~aYAL~la~--~~~~~~~~~~~L~~~a~~ 164 (246)
T PF07678_consen 126 LDNIQDPYTLALVAYALALAG--DSPQASKLLNKLNSMATT 164 (246)
T ss_dssp HGCTSSHHHHHHHHHHHHHTT--TCHHHHHHHHHHHCHCEE
T ss_pred ccccCCHHHHHHHHHHHHhhc--ccchHHHHHHHHHHhhhh
Confidence 345779999999999999999 788999999888766543
No 163
>KOG4095|consensus
Probab=20.85 E-value=40 Score=30.20 Aligned_cols=19 Identities=32% Similarity=0.861 Sum_probs=16.7
Q ss_pred cCCceeEEEEEeCCeeE-Ee
Q psy17028 234 FKRWRTRYFTLSGAHLS-YK 252 (334)
Q Consensus 234 ~K~WKrRwFVL~~~~L~-Yk 252 (334)
++.|-++|.++.+..|. ||
T Consensus 28 VRrWEKKwVtvgDTslRIyK 47 (165)
T KOG4095|consen 28 VRRWEKKWVTVGDTSLRIYK 47 (165)
T ss_pred HHHHhhheEeecccceEEEE
Confidence 47799999999999996 87
No 164
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=20.52 E-value=4e+02 Score=26.79 Aligned_cols=88 Identities=20% Similarity=0.243 Sum_probs=0.0
Q ss_pred CcchHHHHHhhHHHHHhhcc-------CchhhHHHHHHHHHHhhcCCchh--------hh--chHHHHHhhhcC------
Q psy17028 9 LCGGYKLLEASLPQLCEYLA-------TNSTILATMQIFLHLAEKRPQLL--------VD--YVPKLKQANEGN------ 65 (334)
Q Consensus 9 ~~~~~~~l~~~vp~L~~~L~-------~~~~~~~~l~il~~ia~~~p~~l--------~~--~l~~~k~~~~~~------ 65 (334)
+|-.+++++.-+|.|+.-|. ++.+...+++.|..+........ .+ .+|.+-+..-..
T Consensus 29 ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~ 108 (415)
T PF12460_consen 29 LSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD 108 (415)
T ss_pred HHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc
Q ss_pred --chhHHHHHHHHH-hhccCChhhHHHHHHHHHh
Q psy17028 66 --ANTLCVTVQVVA-AVGRLNKDKAQDALNFILA 96 (334)
Q Consensus 66 --p~~~~~~aki~g-avG~~~~~~a~~~L~~l~~ 96 (334)
+..+..+++|++ .|..+++++.++.++-+++
T Consensus 109 ~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~ 142 (415)
T PF12460_consen 109 LDDRVLELLSRLINLIVRSLSPEKQQEILDELYS 142 (415)
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 165
>KOG2137|consensus
Probab=20.40 E-value=2.2e+02 Score=31.34 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=70.9
Q ss_pred hHHHHHhhHHHHHhhccCchhh--HHHHHHHHHHhhcCCchhhhc--hHHHHHhhhcCchhHHHHHHHHHhhccCChh-h
Q psy17028 12 GYKLLEASLPQLCEYLATNSTI--LATMQIFLHLAEKRPQLLVDY--VPKLKQANEGNANTLCVTVQVVAAVGRLNKD-K 86 (334)
Q Consensus 12 ~~~~l~~~vp~L~~~L~~~~~~--~~~l~il~~ia~~~p~~l~~~--l~~~k~~~~~~p~~~~~~aki~gavG~~~~~-~ 86 (334)
-.++++.++|.|...++|.+.. +.+|+++-.++++-+..++.- ||+++..+. .=.-+.-.--++-++|.+-+- .
T Consensus 383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~-~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAF-KTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchh-cccchHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999977765 569999999999998888765 999998843 222222233344445544431 2
Q ss_pred HHHHHHHHHhhCCCCcchhhhHHHHHHHHhhccCCCcccc
Q psy17028 87 AQDALNFILAHLPKADRSSQSVLLREATLLCSTYPVLCTD 126 (334)
Q Consensus 87 a~~~L~~l~~~L~~~d~~~~~~Ll~Ei~~l~~~~p~ll~~ 126 (334)
+=.+++-+.-.+.+ -.+-++.+++=...|..+-+.+-+.
T Consensus 462 ~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 462 KAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhccc
Confidence 22234444433333 2344566666666666665554444
No 166
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=20.27 E-value=57 Score=25.73 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=20.4
Q ss_pred HhhccCChhhHHHHHHHHHhhCCCC
Q psy17028 77 AAVGRLNKDKAQDALNFILAHLPKA 101 (334)
Q Consensus 77 gavG~~~~~~a~~~L~~l~~~L~~~ 101 (334)
-|+-++|+++|++.|.++-+-+.-+
T Consensus 48 ~Ai~~ide~eA~e~l~~l~el~~~~ 72 (76)
T TIGR00074 48 FAISVLDEEEARETLDALQELFDAV 72 (76)
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999988765543
Done!