RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17028
(334 letters)
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 67.8 bits (166), Expect = 3e-14
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 5/125 (4%)
Query: 204 NHPERAVGFLQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKEDKQETP 262
E + S EG L K+G + K W+TR+FTL L Y K +
Sbjct: 4 GRTEDDLVPTAPSLGTKEGYLT-KQG--GLVKTWKTRWFTLHRNELKYFKDQMSPEPIRI 60
Query: 263 IDVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEM 322
+D+ +V+ ++ F + + L K G A++W++ L ++ + +
Sbjct: 61 LDLTECSAVQFD-YSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLN 119
Query: 323 PTRGS 327
G+
Sbjct: 120 QGEGT 124
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 64.7 bits (158), Expect = 2e-13
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 5/112 (4%)
Query: 214 QDSHPVI-EGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKEDKQETPIDVHRIRSV 271
S V+ +G + KKG K W R+F L +SY ++ I + V
Sbjct: 3 SGSSGVLKQGYM-MKKG--HRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCV 59
Query: 272 KVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMP 323
+ F + D + + + K ++W+Q + + +
Sbjct: 60 ESLPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKLGSSG 111
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 61.7 bits (150), Expect = 4e-12
Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Query: 214 QDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKEDKQETPIDVHRIRSVK 272
QDS + G K+G + K W+ RYF L + Y K E + I + + V+
Sbjct: 10 QDSAVIKAGYCV-KQG--AVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQ 66
Query: 273 VSRGARNIPK--AFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMPTR 325
+ + + + FEI T + ++ + + W++ +S + +
Sbjct: 67 ECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSAS 121
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 60.5 bits (147), Expect = 7e-12
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 214 QDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKEDKQETPIDVHRIRSVK 272
S V G L +K + + ++ R+ G +SY KE + I + I +V+
Sbjct: 4 GSSGKVKSGWL-DKLSP-QGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVR 61
Query: 273 VSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMPTRGSS 328
V FE+ T + + + + + W+ L + SQ+ ++ S
Sbjct: 62 VQG-----DNKFEVVTTQRTFVFRVEKEEERNDWISILLNALK-SQSLTSQSQASG 111
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 61.3 bits (148), Expect = 1e-11
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 221 EGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQET-PIDVHRIRSVKVSRGARN 279
EG L K ++ + + L G L + K+ +D+ + +
Sbjct: 21 EGFL-LIKR--SGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEK 77
Query: 280 IPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHS 317
F + + + LK +N ++ E+W + V S
Sbjct: 78 NCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELS 115
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 59.9 bits (145), Expect = 3e-11
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
Query: 216 SHPVIEGQL-KEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQET---PIDVHRIRSV 271
+ G L K +K + W+ R+ LS Y GS +DKQ+ ID + +R
Sbjct: 15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMN 74
Query: 272 KVSRGARNIPKAFEIFTGDD-SLILKPKNGKNAEQWVQCLSVVVAHSQAKEMPTR 325
R FEI D + K+AE+WVQ L ++ + +P
Sbjct: 75 NTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGSDVIPED 129
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 59.0 bits (143), Expect = 3e-11
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 215 DSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSG--AHLSYKGSKEDKQETPIDVHRIRSVK 272
S + G L K G + W++R+F L Y + +D P+D + S
Sbjct: 5 SSGKKLCGYLS-KFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDA--NPLDSIDLSSAV 61
Query: 273 VSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVV 313
A FEI T + LK + W+Q L +
Sbjct: 62 FDCKADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMK 102
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 57.4 bits (139), Expect = 5e-11
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 221 EGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVSRGARNI 280
G L K W+ R+ L LSY S+++ + + ++ +
Sbjct: 4 CGVLS-KWTN--YIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFD- 59
Query: 281 PKAFEIFTGDDSLILKPKNGKNAEQWVQCL 310
F+I D L+ ++ + +QW+ +
Sbjct: 60 ECRFDISVNDSVWYLRAQDPDHRQQWIDAI 89
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 57.9 bits (140), Expect = 6e-11
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 5/107 (4%)
Query: 220 IEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVSRGARN 279
+EG L K + W+ R+F L LSY S++D + ++ ++
Sbjct: 1 MEGVLY-KWTNY--LTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKV-HSA 56
Query: 280 IPKAFEI-FTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMPTR 325
E+ G+ +K N ++W+ L A + R
Sbjct: 57 DNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKASLTDTRLVPR 103
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 59.6 bits (144), Expect = 1e-10
Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 10/152 (6%)
Query: 176 LRHSGFCDVFE-YGVSGGGKEASWGCFLCNHPERAVGFLQDSHPVI-EGQLKEKKG---R 230
L F + GG SW C + + + + +G L G
Sbjct: 14 LFQGPGSPYFHSFLYMNGGLMNSWKRRWCVLKDETFLWFRSKQEALKQGWL-HNNGGGSS 72
Query: 231 WKIFKRWRTRYFTLSGAHLSY-KGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTG 289
+ W+ R+F L + L Y + E+K + ++V + + + N +I
Sbjct: 73 TLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNTNKEN---GIDIIMA 129
Query: 290 DDSLILKPKNGKNAEQWVQCLSVVVAHSQAKE 321
D + L ++ ++A QW LS V + + +
Sbjct: 130 DRTFHLIAESPEDASQWFSVLSQVHSSTDQEI 161
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 55.9 bits (135), Expect = 4e-10
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 214 QDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKEDKQETPIDVHRIRSVK 272
S P+ G LK K+ I K W+ RYF L L Y K ++ K + + + +
Sbjct: 4 GSSGPIKMGWLK-KQR--SIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKE 60
Query: 273 VSRGARNIPK-AFEIFT--------GDDSLILKPKNGKNAEQWVQCLSVVVAHSQA 319
++ K FEI G DS +L + E+WV+ L V +
Sbjct: 61 IATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 55.7 bits (134), Expect = 5e-10
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 11/117 (9%)
Query: 213 LQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTL--SGAHLSYKGSKEDKQ--ETPIDVHRI 268
+ D V EG L K+G + K WR RYF L G + YK +D E P++ +
Sbjct: 3 MSDVAIVKEGWLH-KRG--EYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSV 59
Query: 269 RSVKVSRGARNIPKAFEIFTGDDS----LILKPKNGKNAEQWVQCLSVVVAHSQAKE 321
++ + R P F I + + + E+W + V + +E
Sbjct: 60 AQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQE 116
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 57.4 bits (138), Expect = 5e-10
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 195 EASWGCFLCNHPERAVGFLQDSHPVIEGQLKEKKGRWKIF-KRWRTRYFTLSGAHLSYKG 253
+ + + + G L++++ W+ R+ LS Y G
Sbjct: 83 DKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYG 142
Query: 254 SKEDKQET---PIDVHRIRSVKVSRGARNIPKAFEIFTGDD-SLILKPKNGKNAEQWVQC 309
S +DKQ+ ID + +R R FEI D + K+AE+WVQ
Sbjct: 143 SDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQ 202
Query: 310 LSVVV 314
L ++
Sbjct: 203 LKFIL 207
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 54.8 bits (132), Expect = 7e-10
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 8/103 (7%)
Query: 221 EGQLKEKKGRWKIF-KRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVSRGARN 279
EG L K G + + W+T + LS L + D P+ + + R
Sbjct: 3 EGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVI--PLLSVNMGGEQCGGCRRA 60
Query: 280 I----PKAFEI-FTGDDSLILKPKNGKNAEQWVQCLSVVVAHS 317
P AF++ + L L ++ +W+Q L V+
Sbjct: 61 NTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKG 103
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 54.7 bits (132), Expect = 9e-10
Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 218 PVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKEDKQETPIDVHRIRSVKVSRG 276
+ EG L KKG +F W+ + L + + K ++ + I + +
Sbjct: 5 RIREGYL-VKKG--SVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQD 61
Query: 277 ARNIPKAFEIFTGDD-SLILKPKNGKNAEQWVQCLSVVVAHSQAKEM 322
F+I T + + + WV+ ++ + + E
Sbjct: 62 FGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCIEGLEH 108
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 54.1 bits (130), Expect = 2e-09
Identities = 13/96 (13%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 227 KKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEI 286
KK I K W+ R ++ L+ + ++Q +++ VK + + +F++
Sbjct: 18 KKSD-GIRKVWQRRKCSVKNGILTISHATSNRQPAKLNL-LTCQVKPNAEDKK---SFDL 72
Query: 287 FTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEM 322
+ + + + ++ ++ W+ L+ +
Sbjct: 73 ISHNRTYHFQAEDEQDYVAWISVLTNSKEEALTMAF 108
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 53.6 bits (129), Expect = 2e-09
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 12/115 (10%)
Query: 214 QDSHPVIEGQLKEKKGRWKIFKRWRTRYFTL--SGAHLSYKGSKEDKQET-PIDVHRIRS 270
S EG L KKG K W+ R+F L + L Y + D + ID+ + +
Sbjct: 4 GSSGRSYEGIL-YKKGA--FMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEA 60
Query: 271 VKVSRGARNIPKA------FEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQA 319
V PK F++ T ++ +A+QWV + ++ +
Sbjct: 61 VAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSSGPS 115
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 53.2 bits (128), Expect = 2e-09
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 218 PVIEGQL-KEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQET---PIDVHRIRSVKV 273
+ +G L K+ K W+ R+ +S Y +++ KQ I + +R
Sbjct: 3 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPH 62
Query: 274 SRGARNIPKAFEIFTGDD-SLILKPKNGKNAEQWVQCLSVVV 314
R FE+ + D + + A WV +S ++
Sbjct: 63 LRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLL 104
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 53.6 bits (129), Expect = 3e-09
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 8/115 (6%)
Query: 215 DSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQET---PIDVHRIRSV 271
+ I G L K+ + W+ R+F LSG L Y ++ + + IR
Sbjct: 8 NLPVHIRGWLH-KQDS-SGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPD 65
Query: 272 KVSRGARNIPKAFEIFT-GDDSLILKPKNGKNAEQWVQCLS-VVVAHSQAKEMPT 324
R F G + +L ++ W++ L A P
Sbjct: 66 GPGA-PRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRAEGDDYGQPR 119
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 53.6 bits (129), Expect = 3e-09
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 11/117 (9%)
Query: 215 DSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKEDKQETPIDVHRIRSVKV 273
++ V G L K+ K W+ R+F LS L Y + KE+ I + + +
Sbjct: 18 NAPVVRRGWL-YKQDS-TGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALL 75
Query: 274 SRGAR-NIPKAFEIFTGDD-SLILKPKNGKNAEQWVQCLSVVVAHSQAKEMPTRGSS 328
+ N AF+ + + GK E W++ + A + T G S
Sbjct: 76 TSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAM------LDAALVQTSGPS 126
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 53.4 bits (128), Expect = 3e-09
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 12/115 (10%)
Query: 215 DSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAH---LSYKGSKEDKQETPIDVHRIR-- 269
D I G L + + ++ RYF L L Y + ++ V ++
Sbjct: 12 DRQNRICGFLDIEDN--ENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLT 69
Query: 270 -----SVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQA 319
S+ + P F I L+ + K+ + WV+ L+ +
Sbjct: 70 YISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKSGPS 124
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 53.2 bits (128), Expect = 4e-09
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 215 DSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKEDKQETPIDVHRIRSVKV 273
++ G L ++ K+W R+F L L Y K KE+ I + R V
Sbjct: 19 NAPVTKAGWLFKQASSG--VKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAV 76
Query: 274 SRGAR-NIPKAFEI-FTGDDSLILKPKNGKNAEQWVQCLSVVV 314
+ F+ G + ++ + E W+Q +
Sbjct: 77 QPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 119
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 52.0 bits (125), Expect = 6e-09
Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 214 QDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKEDKQETPIDVHRIRSVK 272
S + G L + K W+ +F + L S++ + +V
Sbjct: 4 GSSGSTMSGYLY-RSK--GSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGF-TVT 59
Query: 273 VSRGARNIPKAFEI-FTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQA 319
+ + + K F++ G + K + + ++W+ +
Sbjct: 60 LVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSGPS 107
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 53.2 bits (127), Expect = 8e-09
Identities = 20/113 (17%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 215 DSHPVIEGQL-KEKKGRWKIF-KRWRTRYFTLSGAHLSYKGSKEDKQET--PIDVHRIRS 270
+ + ++E L K + + K ++ R F L+ + L+Y + +K+ IDV +I+
Sbjct: 12 NFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKC 71
Query: 271 VKVSRGARNIPK-----AFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQ 318
V++ + + F++ ++L + + ++ + WV+ L + ++
Sbjct: 72 VEIVKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKNNN 124
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 51.6 bits (124), Expect = 1e-08
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 5/108 (4%)
Query: 215 DSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKEDKQETPIDVHRIRSVKV 273
++ G L ++ K+W R+F L L Y K KE+ I + R V
Sbjct: 8 NAPVTKAGWLFKQASSG--VKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAV 65
Query: 274 SRGAR-NIPKAFEIFT-GDDSLILKPKNGKNAEQWVQCLSVVVAHSQA 319
+ F+ G + ++ + E W+Q +
Sbjct: 66 QPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQSG 113
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 51.5 bits (123), Expect = 1e-08
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 215 DSHPVIEGQLKEKKGRWKIFKRWRTRYFTL------SGAHLSYKGSKEDKQET-PIDVHR 267
S G L G+ ++KRW+ R+F L + A SY+ K + QE +D +
Sbjct: 5 SSGMKHSGYLW-AIGK-NVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYT 62
Query: 268 IRSVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMPTRGS 327
+ G F D++I + ++ WVQ + S PT+
Sbjct: 63 VDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQSG 122
Query: 328 S 328
Sbjct: 123 P 123
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 51.9 bits (124), Expect = 2e-08
Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 218 PVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVSRGA 277
P ++ L+ + R K +R + LSY S+++ PI ++ +V
Sbjct: 9 PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDV 68
Query: 278 RNIPKAFEIFT------GDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMP 323
+ F I G + L+ ++ + +W+ + S+ + M
Sbjct: 69 NVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRL---ASKGRTMA 117
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 50.3 bits (120), Expect = 4e-08
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 8/118 (6%)
Query: 214 QDSHPVIEGQLKEKKGRWKIFKRWRTRYFTL--SGAHLSYKGSKEDKQETPIDVHRIRSV 271
S + G L K + W+ R+F L L Y +++ + + P ++
Sbjct: 4 GSSGENVYGYLM-KYT--NLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGA 60
Query: 272 KVSRGARNIPKAFEIFTGD-DSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMPTRGSS 328
+S + F + + L+ + K + WV L + H + + S
Sbjct: 61 VISPSDED-SHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQH-HTEAIGKNNSG 116
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 50.6 bits (120), Expect = 7e-08
Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 10/126 (7%)
Query: 211 GFLQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKEDKQ----ETPIDV 265
G+L V + + + W+ Y L G L YK +E E PI V
Sbjct: 7 GWLHFRPLVTDKGKRVGGSI----RPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISV 62
Query: 266 HRIRSVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMPTR 325
+ + +S F + T D + + ++ + W++ + ++ T
Sbjct: 63 NAC-LIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGVTN 121
Query: 326 GSSLVR 331
+ R
Sbjct: 122 RDLISR 127
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 49.6 bits (118), Expect = 7e-08
Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 21/122 (17%)
Query: 214 QDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKEDKQETP---------- 262
+ G L E++ K K + Y+ L+ L +K + K P
Sbjct: 2 HPFTEIKSGFL-ERRS--KFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECT 58
Query: 263 IDVHRIRSVKVSRGARNIPKAFEI-------FTGDDSLILKPKNGKNAEQWVQCLSVVVA 315
+ H ++ S + F + + + K + ++ W L ++ +
Sbjct: 59 VTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTS 118
Query: 316 HS 317
S
Sbjct: 119 TS 120
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 1e-07
Identities = 54/340 (15%), Positives = 95/340 (27%), Gaps = 99/340 (29%)
Query: 8 NLCGGYKLLEASLPQLCEYLATNSTILATMQIFL--HLAEKRPQ--LLV-DYV--PKLKQ 60
L ++ + ++ + + ++Q L L K + LLV V K
Sbjct: 204 KLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 61 ANEGNANTLCVT--VQVVAAVGR--------------LNKDKAQD----ALNFILAHLPK 100
A + L T QV + L D+ + L+ LP
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP- 319
Query: 101 ADRSSQSVLLREATLLCSTYPVLCTDKMLAEVWQCSRNRYNHTSTYWSATHYQLD-LIRC 159
RE +T P ++AE + ++ W H D L
Sbjct: 320 ----------REV---LTTNPRRL--SIIAESIRDGLATWD----NWK--HVNCDKLTTI 358
Query: 160 QVYLIDAQDQEAVLNELRHSGF--CDVFEYGVSGGGKEASWGCFLCNHPERAVGFL--QD 215
++ + E R F VF + P + +
Sbjct: 359 IESSLNVLEP----AEYRKM-FDRLSVFPPSA--------------HIPTILLSLIWFDV 399
Query: 216 SHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVSR 275
+ + + + K+ + ++ +L K E++ +HR V
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA----LHR-SIVD--- 451
Query: 276 GARNIPKAFEIFTGDDSLILKPKNG----------KNAEQ 305
NIPK F+ D LI + KN E
Sbjct: 452 -HYNIPKTFD----SDDLIPPYLDQYFYSHIGHHLKNIEH 486
Score = 36.0 bits (82), Expect = 0.019
Identities = 50/231 (21%), Positives = 81/231 (35%), Gaps = 62/231 (26%)
Query: 116 LCSTYPVLCTDK-MLAEVWQCSRNR-YNHTSTYWSATHYQLDLIRCQVYLIDAQDQEAVL 173
L S M+ ++ R+R YN + + ++ R Q YL + ++A L
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-----AKYNVSRLQPYL---KLRQA-L 144
Query: 174 NELRHSGFCDVFEYGVSGGGKEASWGCFLCNHPERAVGFLQDSHPVIEGQLKEKKGRWKI 233
ELR + V GV G GK +W + A+ + V + K +KI
Sbjct: 145 LELRPAKN--VLIDGVLGSGK--TW---V------ALDVCLS-YKV------QCKMDFKI 184
Query: 234 FKRWRTRYFTLSGAHLSYKGSKEDKQETPIDV-HRIRSVKVSR--GARNIPKAFEIFTGD 290
F W L S E E + ++I SR + NI +
Sbjct: 185 F--WLN---------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 291 DSLILKPKNGKNAEQWVQCLSVV--VAHSQAKE---------MPTRGSSLV 330
+LK K +N CL V+ V +++A + TR +
Sbjct: 234 LRRLLKSKPYEN------CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Score = 34.4 bits (78), Expect = 0.060
Identities = 32/153 (20%), Positives = 51/153 (33%), Gaps = 35/153 (22%)
Query: 43 LAEKRPQLLVDYVP------KLKQANEGNANTLCVTVQVVAAVGRLNKDKAQDAL----- 91
L EK+P+ +P K+K NE + V + D L
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFY 474
Query: 92 NFILAHLPKADRSSQSVLLREATLLCSTYPVLCTD-KMLAEVWQCSRNRYNHTSTYWSAT 150
+ I HL + + L R L D + L + H ST W+A+
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFL----------DFRFL-------EQKIRHDSTAWNAS 517
Query: 151 HYQLD-LIRCQVYL--IDAQDQ--EAVLNELRH 178
L+ L + + Y I D E ++N +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 49.0 bits (117), Expect = 1e-07
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 214 QDSHPVI-EGQLKEKKGRWKIFKRWRTRYFTLSG--AHLSYKGSKEDKQET---PIDVHR 267
+ +I +G L K+G K W+ R F L A+L Y + +
Sbjct: 13 EFRGVIIKQGCL-LKQGH--RRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCV 69
Query: 268 IRSVKVSRGARNIPK--AFEIFTGDD-SLILKPKNGKNAEQWVQCLSVVV 314
+ SV+ + R + FEI T D+ L+ K +W++ + +
Sbjct: 70 VTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 119
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 48.2 bits (115), Expect = 1e-07
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 214 QDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSG--AHLSYKGSKEDKQET---PIDVHRI 268
+ +G L K+G K W+ R F L A+L Y + + +
Sbjct: 3 FTGVIIKQGCL-LKQG--HRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVV 59
Query: 269 RSVKVSRGARNIPK--AFEIFTGDD-SLILKPKNGKNAEQWVQCLSVV 313
SV+ + R + FEI T D+ L+ K +W++ + +
Sbjct: 60 TSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 107
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 49.2 bits (117), Expect = 2e-07
Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 19/132 (14%)
Query: 214 QDSHPVIEGQLKEKKG----RWKIFKRWRTRYFTLSGAH------LSYKGSKEDKQETP- 262
Q G L K + ++ R+F L YK K K+ P
Sbjct: 14 QKGGITKHGWL-YKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKE--PK 70
Query: 263 --IDVHRIRSVKVSRGARNIPKAFEIFTGDD-SLILKPKNGKNAEQWVQCLSVVVAHSQA 319
I + V + R AFE+ D S +L + E+W+ L+ ++ +
Sbjct: 71 GSIFLDSCMGVVQNNKVRRF--AFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFE 128
Query: 320 KEMPTRGSSLVR 331
M + +
Sbjct: 129 AAMQEKRNGDSH 140
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 46.9 bits (111), Expect = 6e-07
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 28/129 (21%)
Query: 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKEDKQETPIDVHRIRSVKVSR 275
+P EG L K G K W+ R+F L+ L Y + + + + I + + +V
Sbjct: 4 NPDREGWLL-KLG--GRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLD 60
Query: 276 GARNIPKAFEIFTGDDSLILKPKNGKN----------------------AEQWVQCLSVV 313
+ P FE++ + E+W++ +
Sbjct: 61 PRK--PNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKAS 118
Query: 314 VAHSQAKEM 322
++ +M
Sbjct: 119 ISRDPFYDM 127
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 46.1 bits (109), Expect = 1e-06
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 16/116 (13%)
Query: 213 LQDSHPVI-EGQLKEKKGRWKIFKRWRTRYFTLSGAHLS---YKGSKEDKQET-PIDVHR 267
++ S V+ +G L K+G K W+ R F L Y SKE+ + +
Sbjct: 12 VELSGTVVKQGYL-AKQGH--KRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRG 68
Query: 268 IRSVKVSRGARNIPK-------AFEIFTGDD-SLILKPKNGKNAEQWVQCLSVVVA 315
+ F++ T DD ++ + +W++ + + +
Sbjct: 69 SLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS 124
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 46.3 bits (109), Expect = 3e-06
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 7/108 (6%)
Query: 204 NHPERAVGFLQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPI 263
+G + P + +K K + K ++ + T +S SKE+ TP
Sbjct: 34 GKTSTILGDITSI-PELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPA 92
Query: 264 DVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLS 311
+R +V+ + F I +L P E W++C +
Sbjct: 93 HQMNLRGCEVTPDVNISGQKFNI------KLLIPVAEGMNEIWLRCDN 134
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 45.0 bits (106), Expect = 3e-06
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 14/117 (11%)
Query: 218 PVIEGQLK----EKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKV 273
P +EG L+ K+GR W + LSGA L Y G+K + KV
Sbjct: 1 PTMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKV 60
Query: 274 SRGARNI--------PKAFEIFTGD--DSLILKPKNGKNAEQWVQCLSVVVAHSQAK 320
S + P F++ D + + + +A W + L S+ +
Sbjct: 61 SIVGWMVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSSRPQ 117
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 44.1 bits (104), Expect = 4e-06
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 215 DSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVS 274
S L +W++R+ ++ HL + + + + +V
Sbjct: 5 SSGLETSSYLNVLVN-----SQWKSRWCSVRDNHLHFYQDRNR-SKVAQQPLSLVGCEVV 58
Query: 275 RGARNI-PKAFEIFT-GDDSLILKPKNGKNAEQWVQCL 310
+F I G++ L+ K+ + W+ L
Sbjct: 59 PDPSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLL 96
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 44.2 bits (104), Expect = 6e-06
Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 22/131 (16%)
Query: 216 SHPVI-EGQLKEKKGRWKIFKRWRTRYFTL-SGAHLSYKGSKEDKQET-----PIDVHRI 268
S ++ G L ++ I +RW+ +F L L Y + + E +V I
Sbjct: 5 SSGLVRGGWLW-RQS--SILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDI 61
Query: 269 RSVK-----VSRGARNIPKAFEIFTGDD-SLILKPKNGKNAEQWVQCLSVVVAHSQAKEM 322
+ + R+ + + L L + +A W L +A
Sbjct: 62 KVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTAL------MEANST 115
Query: 323 PTRGSSLVRTA 333
P + V +
Sbjct: 116 PAPAGATVPSG 126
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 43.3 bits (102), Expect = 1e-05
Identities = 23/119 (19%), Positives = 36/119 (30%), Gaps = 18/119 (15%)
Query: 215 DSHPVI-EGQLKEKK----GRWKIFKRWRTRYFTLSGAHLS-YKGSKEDKQETPIDVHRI 268
SH V G L K GR K+ K W + L+G L Y+ +
Sbjct: 8 GSHEVEKSGLLNMTKIAQGGR-KLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGS 66
Query: 269 R----------SVKVSRGARNIPKAFEIFTGDDS-LILKPKNGKNAEQWVQCLSVVVAH 316
R ++ R + I T +L+ + W + L V+
Sbjct: 67 RPESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIER 125
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 44.2 bits (103), Expect = 1e-05
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 32/132 (24%)
Query: 219 VIEGQL-KEKKGRWKIF-KRWRTRYFTLSGAHLSYKGSKEDKQETP-----IDVHRIRSV 271
++E K + + K ++ F L+ LSY ++ IDV +I V
Sbjct: 4 ILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCV 63
Query: 272 KVSRGARNIPK-------------------------AFEIFTGDDSLILKPKNGKNAEQW 306
+ +N P F++ + L + + ++W
Sbjct: 64 ETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRW 123
Query: 307 VQCLSVVVAHSQ 318
+ L V+ ++
Sbjct: 124 IHQLKNVIRYNS 135
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 42.2 bits (99), Expect = 2e-05
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 221 EGQLKEKKGRWKIFKRWRTRYFTL-SGAHLSYKGSKEDKQ--------ETPIDVHRIRSV 271
G L ++ I KRW+ +F L S HL Y + + I++ +
Sbjct: 8 SGWLL-RQS--TILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQEC 64
Query: 272 KVSRGARNIPK--AFEIFTGDD-SLILKPKNGKNAEQWVQCLSVV 313
+ ++ K +I D ++ L ++ + W L
Sbjct: 65 RDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 42.3 bits (99), Expect = 3e-05
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 27/117 (23%)
Query: 227 KKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETP----IDVHRIRSVKV---SRGARN 279
F W R+ LSG +SY +D++ I++ S ++ +R
Sbjct: 13 IFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCA 72
Query: 280 IPKAFEIFTGD-------DSLILKPKNGKNA-------------EQWVQCLSVVVAH 316
FE+ T ++L+ + ++ + W+Q L+ V+
Sbjct: 73 RRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVD 129
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 42.0 bits (98), Expect = 3e-05
Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 36/137 (26%)
Query: 215 DSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVS 274
S V+ LK +G K W + L L K K + + + ++
Sbjct: 5 SSGIVMADWLK-IRGTLK---SWTKLWCVLKPGVLLI--YKTQKNGQWVGTVLLNACEII 58
Query: 275 -RGARNIPKAFEIFTGDDSLILKPKNGKN------------------------AEQWVQC 309
R ++ F++F + I K K W+
Sbjct: 59 ERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDA 118
Query: 310 LSVVVAHSQAKEMPTRG 326
L + + K P+ G
Sbjct: 119 LELAL-----KSGPSSG 130
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 41.8 bits (98), Expect = 3e-05
Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 215 DSHPVI-EGQLKEKK----GRWKIFKR-WRTRYFTLSGAHLS-YKGSKE---------DK 258
+ + G L K G+ ++ K+ W + L G L+ +K SK K
Sbjct: 4 RTKTLDKAGVLHRTKTADKGK-RLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSK 62
Query: 259 QETPIDVHRIRSVKVSRGARNIPK---AFEIFTGD-DSLILKPKNGKNAEQWVQCLSVVV 314
TP +R +S ++ E+ + D +++ + W + ++ +
Sbjct: 63 FSTPEYTVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGI 122
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 43.4 bits (101), Expect = 5e-05
Identities = 18/124 (14%), Positives = 44/124 (35%), Gaps = 9/124 (7%)
Query: 211 GFLQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY----KGSKEDKQETPIDVH 266
G L + ++ + K+ + + ++W+ + +L G L + S D P
Sbjct: 15 GALAVKNFLVHKKNKKVESATR--RKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAV 72
Query: 267 RIRSVKVSRGARNIPK--AFEIFTGD-DSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMP 323
+ + V + K F + D+ + + + E W+ + A + A+
Sbjct: 73 WVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAVARHHH 132
Query: 324 TRGS 327
+
Sbjct: 133 KEDT 136
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 43.0 bits (100), Expect = 6e-05
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
Query: 211 GFLQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKEDKQETPIDVHRIR 269
G+L V KE+K ++W+ + TL G L Y+ ++ E
Sbjct: 15 GWLFFKPLVTLQ--KERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCAL 72
Query: 270 SVK---VSRGARNIPK--AFEIFTGD-DSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMP 323
+ V + K F + D + + + + E WV + A AK+
Sbjct: 73 FAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFAKKHG 132
Query: 324 TRGSS 328
+
Sbjct: 133 KEDTV 137
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 42.9 bits (100), Expect = 6e-05
Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 14/107 (13%)
Query: 235 KRWRTRYFTLSG-------AHLSYKGSKEDKQETP------IDVHRIRSVKVSRGARNIP 281
K R+F L A L Y +++ + I + ++ ++N
Sbjct: 20 KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKN-K 78
Query: 282 KAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQAKEMPTRGSS 328
++T D+ + + + W Q L + ++
Sbjct: 79 HLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRAKGHHDGAAALG 125
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 41.0 bits (95), Expect = 8e-05
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 218 PVIEGQLKEKKGRWKIFKRWRTRYFTL-SGAHLSYKGSKEDKQE-TPIDVHRIRSVKVSR 275
P+ + L K+ + K W+ +Y TL S L Y S D T + V
Sbjct: 4 PIKQSFLL-KRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKV 62
Query: 276 GARNIPKAFEIFTGDDSLILKPKNGKNAEQ 305
+ P+A F S +N E
Sbjct: 63 PGKRPPRAISAFGPSASGSAGQAEEENFEF 92
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 42.4 bits (99), Expect = 1e-04
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 10/118 (8%)
Query: 206 PERAVGFLQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSY-KGSKEDKQETPID 264
+ + + + EG + EK G K + +R R+FT+ L Y K + +
Sbjct: 257 SDADLVPKLSRNYLKEGYM-EKTGP-KQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVF 314
Query: 265 VHR-------IRSVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVA 315
+ + S + P I T D + + + +WV V
Sbjct: 315 IGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVD 372
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 41.1 bits (95), Expect = 3e-04
Identities = 28/245 (11%), Positives = 70/245 (28%), Gaps = 12/245 (4%)
Query: 81 RLNKDKAQDALNFILAHLPKADRSSQSVLLREATLLCSTYPVLCTDKMLAEVWQCSRNRY 140
RL+K + D + + + R Q + + K + +
Sbjct: 149 RLSKKRENDKVKYEVTEDVYTSRKKQ----HQTMMHYFCALNTLQYKKKIALLEPLLGYM 204
Query: 141 NHTSTYWSATHYQLDLIRCQVYLIDAQDQEAVLNELRHSGFCDVFEYGVSGGGKEASWGC 200
+++ +L + + + + +
Sbjct: 205 QAQISFFKMGS--ENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDPLY 262
Query: 201 FLCNHPERAVGFLQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQE 260
P + + + K G + W +++ G +L + +
Sbjct: 263 VPDPDPTKFPVNRNLTRKAGYLNARNKTG--LVSSTWDRQFYFTQGGNLMSQARGDVAGG 320
Query: 261 TPIDVHRIRSVKVSRGARNIPKAFEIFTGDD--SLILKPKNGKNAEQWVQCLSVVVAHSQ 318
+D+ + V R F+I + D S IL+ ++ K+ E+W+ ++ +
Sbjct: 321 LAMDIDNCSVMAVDCEDR--RYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQIY 378
Query: 319 AKEMP 323
E P
Sbjct: 379 LSENP 383
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 36.9 bits (85), Expect = 0.001
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 12/104 (11%)
Query: 220 IEGQLKEKKGRWKIFKR-----WRTRYFTLSGAHLS-YKGSKEDKQETPIDVHRIRSVK- 272
+EG L K K+ W Y ++ + YK +K P S+K
Sbjct: 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKE 60
Query: 273 -VSRGARNIPK---AFEIFTGD-DSLILKPKNGKNAEQWVQCLS 311
+ A + K F++ D + + + K+ + W+Q +S
Sbjct: 61 AICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAIS 104
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 38.2 bits (88), Expect = 0.002
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 14/106 (13%)
Query: 212 FLQDSHPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRS- 270
S P I+G L K+ K W+ Y L + L S + P + +
Sbjct: 126 LNSSSSPEIQGFLHVKELGKK---SWKKLYVCLRRSGLYC--STKGTSAAPRHLQLLADL 180
Query: 271 ----VKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSV 312
+ R A L +KP +N + ++ L
Sbjct: 181 EDSNIFSLIAGRKQYNAPTDHG----LCIKPNKVRNETKELRLLCA 222
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 36.6 bits (84), Expect = 0.003
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 214 QDSHPVI-EGQLKEKKGRWKIFKRWRTRYFTLSGAHLS-YKGSKEDKQETPIDVHRIRSV 271
QD VI +G L + +F L+ +LS YK +E +++ + V ++
Sbjct: 7 QDEILVIRKGWLTINNIGIMK-GGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLR 65
Query: 272 KVSRGARNIPKAFEIFTGD--------DSLILKPKNGKNAEQWVQCL 310
V +G + F +F + L L + + + W
Sbjct: 66 DVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASF 112
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 36.1 bits (83), Expect = 0.003
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 14/113 (12%)
Query: 220 IEGQLKEK-----KGRWKIFKRWRTRYFTLSGAHLSY-------KGSKEDKQETPIDVHR 267
+EG L K G+ + W+ Y L L + E P+ + R
Sbjct: 10 MEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLAR 69
Query: 268 IRSVKVSRGARNIPKAFEIFTGD-DSLILKPKNGKNAEQWVQCLSVVVAHSQA 319
V+ R F++ D + + K+ W++ ++ +A +
Sbjct: 70 A-QGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 127
Score = 35.9 bits (82), Expect = 0.004
Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 16/111 (14%)
Query: 218 PVIEGQLKEKKGRWKIFKRWRTRYFTL------SGAHLSY-----KGSKEDKQETPI--- 263
V +G L + + K+WR +L + A L K + + I
Sbjct: 12 AVKQGFL-YLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLS 70
Query: 264 DVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVV 314
D R+ + AF + T + +L + WVQ + ++
Sbjct: 71 DCLRVAEAGGEASSPRDTSAFFLETKERLYLLAAPAAE-RGDWVQAICLLA 120
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 35.5 bits (82), Expect = 0.021
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 219 VIEGQLKEKKGRWKIFKRWRTRYFTL--SGAHLSYKGSKEDKQ--ETPIDVHRIRSVKVS 274
V EG L K+G + K WR RYF L G + YK +D E P++ + ++
Sbjct: 7 VKEGWLH-KRG--EYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLM 63
Query: 275 RGARNIPKAFEI 286
+ R P F I
Sbjct: 64 KTERPRPNTFII 75
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.022
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 14 KLLEASL----PQLCEYLATNSTI 33
K L+ASL LA +T+
Sbjct: 23 KKLQASLKLYADDSAPALAIKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.030
Identities = 55/364 (15%), Positives = 91/364 (25%), Gaps = 168/364 (46%)
Query: 15 LLEA--SLP-----QLCEYLAT---------------------NSTILA--------TMQ 38
LL S P QL Y+ T + ++ + +
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 39 IFLHLAEK---------------------RPQLLVDYVPKLKQANEGNANT-LCVT---- 72
F K P +L D + + NEG + L ++
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL----ENNEGVPSPMLSISNLTQ 346
Query: 73 VQVVAAVGRLNKDKAQD-----AL-----NFILAHLPKADRSSQSVLLREATLLCSTYPV 122
QV V + N +L N +++ P++ L
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS--------------LYGLNLT 392
Query: 123 LCTDKMLAEVWQCSR-----------NRYN------HTSTYWSATHYQL-DL-------- 156
L K + + Q SR NR+ H+ A+ DL
Sbjct: 393 LRKAKAPSGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 157 ---IRCQVYLI-DAQDQEAVLNELRHSGFCDVFEYGVSGGGKEASWGCFLCNHP---ERA 209
I+ VY D D + + D + P E
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISER-IVDC-----------------IIRLPVKWETT 493
Query: 210 VGFLQDSHPVIE---------GQL--KEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKED- 257
F + +H +++ G L + K G R + L +D
Sbjct: 494 TQF-KATH-ILDFGPGGASGLGVLTHRNKDGTG-------VR--VIVAGTLD-INPDDDY 541
Query: 258 --KQ 259
KQ
Sbjct: 542 GFKQ 545
Score = 30.8 bits (69), Expect = 0.81
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 31/113 (27%)
Query: 237 WRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDD----- 291
+ TR TLS H GS E P I S + + +P+ E F DD
Sbjct: 4 YSTRPLTLS--H----GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 292 -SLILK-------PKNGKNAEQWVQCLSVVVA------------HSQAKEMPT 324
L+ K Q+ Q L++ + H+ A ++
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 33.0 bits (75), Expect = 0.037
Identities = 13/99 (13%), Positives = 36/99 (36%), Gaps = 11/99 (11%)
Query: 219 VIEGQLKEKKGRWKIFKRWRTRYFTLSGAH---LSYKGSKEDKQ---ETPIDVHRIRSVK 272
++ G L+ + + W + + + L +G +D + P+ ++
Sbjct: 9 LLCGPLRLSESG----ETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPD 64
Query: 273 VSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLS 311
+ +++ S L + + +QW++ LS
Sbjct: 65 PEERLDS-GHVWKLQWAKQSWYLSASSAELQQQWLETLS 102
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 33.0 bits (75), Expect = 0.040
Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 16/106 (15%)
Query: 221 EGQLKEKKGRWKIFKR-----WRTRYFTLSGAHLSY---------KGSKEDKQETPIDVH 266
EG + K K+ W Y +S+ + E D+
Sbjct: 11 EGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQ 70
Query: 267 RIRSVKVSRGARNIPKAFEIFTGD-DSLILKPKNGKNAEQWVQCLS 311
+++++ + + +L+ + QWV L
Sbjct: 71 NA-AIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLK 115
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 32.7 bits (74), Expect = 0.046
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 17/109 (15%)
Query: 220 IEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETP----------IDVHRIR 269
+EG L W +Y +S + + S++DK+++ V +
Sbjct: 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVT 62
Query: 270 SVKVSRGARN-IPKAFEIFTGD------DSLILKPKNGKNAEQWVQCLS 311
V R IP+ F+I + +L+L + + ++WV L
Sbjct: 63 QTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLV 111
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 28.3 bits (63), Expect = 1.7
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 258 KQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHS 317
P+D + +VK + ++ F++ +S I + +N K +W++ L
Sbjct: 53 NALYPLDRLAVVNVKDNPPMKD---MFKLLMFPESRIFQAENAKIKREWLEVLEETKRAL 109
Query: 318 QAKE 321
K
Sbjct: 110 SDKR 113
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM
barrel, NYSGXRC, PSI2, structural genomics; 1.87A
{Rhodopseudomonas palustris}
Length = 313
Score = 29.1 bits (66), Expect = 1.9
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 258 KQETPIDVHRIRSVKVSRGARNIPKAFEIFTGDDSLIL 295
K E + +I +++ + ++ I G+ L L
Sbjct: 169 KHEDWPGLEKITTLRGFQKDGSLRP-LSILCGNGGLFL 205
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family,
PFL_5859, structural genomics, PSI-2, structure
initiative; 1.90A {Pseudomonas fluorescens}
Length = 434
Score = 28.4 bits (64), Expect = 3.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 75 VVAAVGRLNKDKAQDALNFILAHLPKA 101
V+A VG L++ A+ + A LPK
Sbjct: 198 VIALVGDLSRSDAEAIAAQVSAALPKG 224
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 28.5 bits (63), Expect = 3.8
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 217 HPVIEGQLKEKKGRWKIFKRWRTRYFTLSGAHLSYKGSKEDKQETPIDVHRIRSVKVSRG 276
+P EG L + GR K W+ R+F L+ L Y DK+ P + + ++ +
Sbjct: 212 NPDREGWLLKLGGRVK---TWKRRWFILTDNCLYYFEYTTDKE--PRGIIPLENLSIREV 266
Query: 277 A-RNIPKAFEIFTGDDSLILKPKNGKNAEQWVQCLSVVVAHSQA 319
P FE++ + A+ V + VV A
Sbjct: 267 EDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISA 310
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI
biosynthesis, schiff base, cytoplasm, diaminopimelate
biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Length = 311
Score = 27.5 bits (62), Expect = 6.4
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 264 DVHRIRSVK-------VSRGARNIPKAFEIFTGDDSLIL 295
D I VK ++ + P+ F I+TG+D
Sbjct: 160 DHPNIIGVKECTSLANMAYLIEHKPEEFLIYTGEDGDAF 198
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis,
pyruvate, TIM barrel, NYSGXRC, PSI2., structural
genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris}
Length = 300
Score = 27.5 bits (62), Expect = 6.4
Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 8/40 (20%)
Query: 264 DVHRIRSVK--------VSRGARNIPKAFEIFTGDDSLIL 295
+ RIR +K + A ++F+ +
Sbjct: 156 EHPRIRYIKDASTNTGRLLSIINRCGDALQVFSASAHIPA 195
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 27.6 bits (61), Expect = 6.9
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 106 QSVLLREATLLCSTYPVLCTDKMLAEVWQCSRNRYNHTSTYWS------ATHYQLDLIRC 159
VLL +LLC P +A +++ R +YN + W+ + Y ++
Sbjct: 102 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGGSAYDEAIMAQ 161
Query: 160 QVYLIDAQDQEAVLNELRHSGFCDVFEY 187
Q + + L R EY
Sbjct: 162 QDRIQQEIAVQNPLVSERLELSVLYKEY 189
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding,
hydrolase; 3.00A {Sphingomonas}
Length = 424
Score = 27.6 bits (62), Expect = 7.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 75 VVAAVGRLNKDKAQDALNFILAHLPKA 101
VV VG + + +A+ + A LP
Sbjct: 191 VVTLVGDITRAEAETIAQQLTADLPAG 217
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A
{Pseudomonas aeruginosa}
Length = 315
Score = 27.1 bits (61), Expect = 8.7
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 8/40 (20%)
Query: 264 DVHRIRSVK--------VSRGARNIPKAFEIFTGDDSLIL 295
+V + VK + + + G + L L
Sbjct: 177 EVDNVTMVKESTGDIQRMHKLRLLGEGRVPFYNGCNPLAL 216
>1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase; 1.0A
{Aspergillus oryzae} SCOP: d.92.1.12
Length = 177
Score = 26.6 bits (58), Expect = 9.2
Identities = 22/114 (19%), Positives = 32/114 (28%), Gaps = 14/114 (12%)
Query: 84 KDKAQDALNFILAHLPKADRSSQSVLLREATLLCSTYPVLCTDKMLAEVWQCSRNRYNHT 143
K Q + L + + S T C+ C +LA S+N +
Sbjct: 45 KTTDQQTRTTVAERLRAVAKEAGSTSGGSTTYHCNDPYGYCEPNVLAYTLP-SKNEIANC 103
Query: 144 STYWSATHYQLDLIRCQVYLIDAQDQEAV-LNELRH-----SGFCDVFEYGVSG 191
Y+S AQDQ L+E H + YG
Sbjct: 104 DIYYSELPPLAQ-------KCHAQDQATTTLHEFTHAPGVYQPGTEDLGYGYDA 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.411
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,989,414
Number of extensions: 284336
Number of successful extensions: 606
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 79
Length of query: 334
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 240
Effective length of database: 4,077,219
Effective search space: 978532560
Effective search space used: 978532560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)