BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17030
         (108 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
 pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
          Length = 520

 Score = 26.2 bits (56), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 15  LIGLSGQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIPDL 59
           L+G   ++ R    + +T+  +L+  L H M+  +++IS + P L
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL 268


>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
           Rasagiline
 pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
           Rasagiline
 pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
           Isatin
 pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
           Isatin
          Length = 520

 Score = 26.2 bits (56), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 15  LIGLSGQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIPDL 59
           L+G   ++ R    + +T+  +L+  L H M+  +++IS + P L
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL 268


>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
 pdb|1GOS|B Chain B, Human Monoamine Oxidase B
 pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
           1,4-Diphenyl-2-Butene
 pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
           1,4-Diphenyl-2-Butene
 pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
 pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
 pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
           N-(2-Aminoethyl)-P-Chlorobenzamide
 pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
           N-(2-Aminoethyl)-P-Chlorobenzamide
 pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
           Lauryldimethylamine-N-Oxide (Ldao)
 pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
           N-Propargyl-1(R)-Aminoindan (Rasagiline)
 pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
           N-Propargyl-1(R)-Aminoindan (Rasagiline)
 pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
           N-propargyl-1(s)- Aminoindan
 pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
           N-propargyl-1(s)- Aminoindan
 pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
           Propargyl-1(R)-Aminoindan
 pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
           Propargyl-1(R)-Aminoindan
 pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
           Propargyl-1(R)-Aminoindan
 pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
           Propargyl-1(R)-Aminoindan
 pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
 pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
 pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
 pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
 pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
 pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
 pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
 pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
 pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
 pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
 pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
 pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
 pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
 pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
 pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
           Inhibitor Safinamide
 pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
           Inhibitor Safinamide
 pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
           Inhibitor
           7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
 pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
           Inhibitor
           7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
 pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
           Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
           Coumarin
 pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
           Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
           Coumarin
 pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
 pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
 pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
           Phenyethylhydrazine
 pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
           Phenyethylhydrazine
 pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
 pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
 pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
           Complex With 2-(2-Benzofuranyl)-2-Imidazoline
 pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
           Complex With 2-(2-Benzofuranyl)-2-Imidazoline
 pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
           2-(2-Benzofuranyl) -2-Imidazoline
 pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
           2-(2-Benzofuranyl) -2-Imidazoline
 pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
           2-(2-Benzofuranyl)-2-Imidazoline
 pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
           2-(2-Benzofuranyl)-2-Imidazoline
 pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
           With 2-(2-Benzofuranyl)-2-Imidazoline
 pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
           With 2-(2-Benzofuranyl)-2-Imidazoline
 pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
 pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
 pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
           Complex With Pioglitazone
 pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
           Complex With Pioglitazone
 pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
           Complex With Rosiglitazone
 pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
           Complex With Rosiglitazone
          Length = 520

 Score = 26.2 bits (56), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 15  LIGLSGQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIPDL 59
           L+G   ++ R    + +T+  +L+  L H M+  +++IS + P L
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL 268


>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
           With Methylene Blue And Bearing The Double Mutation
           I199a- Y326a
 pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
           With Methylene Blue And Bearing The Double Mutation
           I199a- Y326a
          Length = 519

 Score = 26.2 bits (56), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 15  LIGLSGQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIPDL 59
           L+G   ++ R    + +T+  +L+  L H M+  +++IS + P L
Sbjct: 223 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL 267


>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
           Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
           Imidazoline
 pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
           Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
           Imidazoline
          Length = 520

 Score = 26.2 bits (56), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 15  LIGLSGQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIPDL 59
           L+G   ++ R    + +T+  +L+  L H M+  +++IS + P L
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL 268


>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
 pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
          Length = 519

 Score = 26.2 bits (56), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 15  LIGLSGQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIPDL 59
           L+G   ++ R    + +T+  +L+  L H M+  +++IS + P L
Sbjct: 223 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL 267


>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
 pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
          Length = 520

 Score = 26.2 bits (56), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 15  LIGLSGQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIPDL 59
           L+G   ++ R    + +T+  +L+  L H M+  +++IS + P L
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL 268


>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
 pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
          Length = 520

 Score = 26.2 bits (56), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 15  LIGLSGQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIPDL 59
           L+G   ++ R    + +T+  +L+  L H M+  +++IS + P L
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL 268


>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
 pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
           Oxidase B: Structures And Catalytic Properties Of Tyr435
           Mutant Proteins
          Length = 520

 Score = 25.8 bits (55), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 15  LIGLSGQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIPDL 59
           L+G   ++ R    + +T+  +L+  L H M+  +++IS + P L
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL 268


>pdb|3NUG|A Chain A, Crystal Structure Of Wild Type Tetrameric Pyridoxal
           4-Dehydrogenase From Mesorhizobium Loti
 pdb|3NUG|B Chain B, Crystal Structure Of Wild Type Tetrameric Pyridoxal
           4-Dehydrogenase From Mesorhizobium Loti
 pdb|3NUG|C Chain C, Crystal Structure Of Wild Type Tetrameric Pyridoxal
           4-Dehydrogenase From Mesorhizobium Loti
 pdb|3NUG|D Chain D, Crystal Structure Of Wild Type Tetrameric Pyridoxal
           4-Dehydrogenase From Mesorhizobium Loti
 pdb|3RWB|A Chain A, Crystal Structure Of Complex Of 4pal (4-Pyridoxolactone)
           And Pldh (Tetrameric Pyridoxal 4-Dehydrogenase) From
           Mesorhizobium Loti
 pdb|3RWB|B Chain B, Crystal Structure Of Complex Of 4pal (4-Pyridoxolactone)
           And Pldh (Tetrameric Pyridoxal 4-Dehydrogenase) From
           Mesorhizobium Loti
 pdb|3RWB|C Chain C, Crystal Structure Of Complex Of 4pal (4-Pyridoxolactone)
           And Pldh (Tetrameric Pyridoxal 4-Dehydrogenase) From
           Mesorhizobium Loti
 pdb|3RWB|D Chain D, Crystal Structure Of Complex Of 4pal (4-Pyridoxolactone)
           And Pldh (Tetrameric Pyridoxal 4-Dehydrogenase) From
           Mesorhizobium Loti
          Length = 247

 Score = 25.8 bits (55), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 57  PDLPDWVATEMAKVEFARREALS----RISSTAVTPGLADNGGTGDSP 100
           P++  +VA +   + F R  A       I++ AVTPGL ++ G   SP
Sbjct: 148 PNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASP 195


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,703,719
Number of Sequences: 62578
Number of extensions: 79411
Number of successful extensions: 235
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 13
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)