Query psy17030
Match_columns 108
No_of_seqs 106 out of 139
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 20:03:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2513|consensus 99.8 3.9E-20 8.4E-25 160.3 8.3 83 1-83 538-620 (647)
2 PF04547 Anoctamin: Calcium-ac 99.7 3.5E-17 7.6E-22 134.8 7.0 72 1-72 379-452 (452)
3 KOG2514|consensus 98.7 3.7E-08 8E-13 88.6 6.4 48 33-80 762-809 (861)
4 COG5415 Predicted integral mem 65.9 30 0.00064 27.9 6.6 54 16-70 55-108 (251)
5 cd07223 Pat_PNPLA5-mammals Pat 51.9 39 0.00084 29.1 5.4 29 38-67 349-377 (405)
6 TIGR00887 2A0109 phosphate:H+ 40.8 63 0.0014 26.6 4.9 23 47-69 215-237 (502)
7 KOG0569|consensus 35.2 1.9E+02 0.004 25.3 7.1 35 36-70 184-218 (485)
8 PF14899 DUF4492: Domain of un 34.9 81 0.0017 20.6 3.7 52 26-78 12-63 (64)
9 COG4657 RnfA Predicted NADH:ub 31.1 49 0.0011 25.8 2.6 10 9-18 110-119 (193)
10 PF12349 Sterol-sensing: Stero 27.3 1.5E+02 0.0032 21.4 4.5 25 34-58 44-68 (153)
11 COG3851 UhpB Signal transducti 27.0 2.1E+02 0.0046 25.2 6.0 23 5-28 227-249 (497)
12 PRK12456 Na(+)-translocating N 26.2 37 0.00081 26.4 1.3 11 9-19 117-127 (199)
13 PF02845 CUE: CUE domain; Int 25.3 69 0.0015 18.1 2.0 13 20-32 6-18 (42)
14 PRK02830 Na(+)-translocating N 24.9 41 0.00088 26.2 1.2 11 9-19 120-130 (202)
15 TIGR01940 nqrE NADH:ubiquinone 24.5 42 0.00091 26.2 1.2 11 9-19 119-129 (200)
16 PRK12274 serine/threonine prot 24.0 3.1E+02 0.0067 21.5 6.0 61 39-100 152-218 (218)
17 COG3202 ATP/ADP translocase [E 23.9 1.7E+02 0.0038 26.0 5.0 61 3-63 185-255 (509)
18 TIGR01201 HU_rel DNA-binding p 23.0 21 0.00045 25.8 -0.7 18 84-101 128-145 (145)
19 PRK05151 electron transport co 22.7 48 0.001 25.6 1.3 11 9-19 110-120 (193)
20 TIGR01943 rnfA electron transp 22.4 49 0.0011 25.5 1.3 12 9-20 109-120 (190)
21 PRK01061 Na(+)-translocating N 21.7 51 0.0011 26.6 1.2 11 9-19 129-139 (244)
22 PRK09292 Na(+)-translocating N 21.1 54 0.0012 25.7 1.3 12 9-20 108-119 (209)
No 1
>KOG2513|consensus
Probab=99.81 E-value=3.9e-20 Score=160.30 Aligned_cols=83 Identities=45% Similarity=0.841 Sum_probs=79.9
Q ss_pred CchhhhHHHHHhhHHHHhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHh
Q psy17030 1 MEVMSLVSVLVNCALIGLSGQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIPDLPDWVATEMAKVEFARREALSR 80 (108)
Q Consensus 1 ~E~msviAVvtNCaLIg~S~q~~~lfp~~s~~~~il~vVvvEHvll~vK~il~~~IPD~P~wV~~~~ar~ey~~~eaL~~ 80 (108)
||+||++|++|||+|+||++|+++.||..|+.+.++++|++||+.+++||+++++|||.|.||+..++|.+|+++|+++|
T Consensus 538 l~~lSvls~vtncaLi~~~~~~~~~~~~~s~~~~il~~V~~EH~~l~Lkflis~vipe~p~wva~~~~k~~~~~~e~~~k 617 (647)
T KOG2513|consen 538 LELLSVLSCVTNCALIGMYPQVNKLWPLLSPENAILIIVILEHVLLLLKFLISSVIPESPRWVAAGIAKAEFQAREAFKK 617 (647)
T ss_pred HHHHHHHHHHHhHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhH
Confidence 58999999999999999999999999988999999999999999999999999999999999999999999999999997
Q ss_pred hcC
Q psy17030 81 ISS 83 (108)
Q Consensus 81 ~s~ 83 (108)
+.+
T Consensus 618 q~~ 620 (647)
T KOG2513|consen 618 QLQ 620 (647)
T ss_pred HHh
Confidence 543
No 2
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=99.69 E-value=3.5e-17 Score=134.79 Aligned_cols=72 Identities=36% Similarity=0.831 Sum_probs=69.0
Q ss_pred CchhhhHHHHHhhHHHHhh--hhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy17030 1 MEVMSLVSVLVNCALIGLS--GQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIPDLPDWVATEMAKVEF 72 (108)
Q Consensus 1 ~E~msviAVvtNCaLIg~S--~q~~~lfp~~s~~~~il~vVvvEHvll~vK~il~~~IPD~P~wV~~~~ar~ey 72 (108)
||+|+++||+|||++++++ +++++++++.+...++++++++||+++++|++++++|||+|.||+.+++|++|
T Consensus 379 l~~i~~lav~tN~~li~~~s~~~~~~~~~~~~~~~~~~~~l~~eh~~~~~~~~i~~~ipd~P~~v~~~~~r~~Y 452 (452)
T PF04547_consen 379 LEIISWLAVITNAALIAFTSDGQLQGYFPDSSLAQRLLFFLVFEHVVFFLKYLISWLIPDVPKWVRIQIQREEY 452 (452)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcC
Confidence 5789999999999999997 78999999988899999999999999999999999999999999999999987
No 3
>KOG2514|consensus
Probab=98.67 E-value=3.7e-08 Score=88.59 Aligned_cols=48 Identities=17% Similarity=0.504 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHh
Q psy17030 33 QTILLIVALEHIMFAVRFIISCVIPDLPDWVATEMAKVEFARREALSR 80 (108)
Q Consensus 33 ~~il~vVvvEHvll~vK~il~~~IPD~P~wV~~~~ar~ey~~~eaL~~ 80 (108)
.++++++++||+++.+|.+++|+|||+|..+++||+||+|+.+|++.+
T Consensus 762 arLaFiiVfehlV~~ik~~i~~~IPDvPk~l~dqi~REkyL~~e~~~e 809 (861)
T KOG2514|consen 762 ARLAFVIVFENLVFEIKELVSWTIPDVPKDLKDQIRREKYLAQELFYE 809 (861)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999988765
No 4
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=65.94 E-value=30 Score=27.91 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=34.6
Q ss_pred HHhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy17030 16 IGLSGQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIPDLPDWVATEMAKV 70 (108)
Q Consensus 16 Ig~S~q~~~lfp~~s~~~~il~vVvvEHvll~vK~il~~~IPD~P~wV~~~~ar~ 70 (108)
||||.-..+ .|.+++..+|..+++---.++.+|+.+.|+---.-...+..+++.
T Consensus 55 l~~S~iy~~-~~~y~~~~~It~~llgs~slymfrwal~~lye~r~~r~~~~L~kL 108 (251)
T COG5415 55 LALSYIYWE-YHGYRPYLVITALLLGSGSLYMFRWALTKLYEFRNNRRLRKLAKL 108 (251)
T ss_pred HHHHHHHhh-ccccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 556654332 366788888888887778888999999886543333333333333
No 5
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5. PNPLA5, also known as GS2L (GS2-like), plays a role in regulation of adipocyte differentiation. PNPLA5 is expressed in brain tissue in high mRNA levels and low levels in liver tissue. There is no concrete evidence in support of the enzymatic activity of GS2L. This family includes patatin-like proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like phospholipase domain-containing protein 5) reported exclusively in mammals.
Probab=51.88 E-value=39 Score=29.14 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q psy17030 38 IVALEHIMFAVRFIISCVIPDLPDWVATEM 67 (108)
Q Consensus 38 vVvvEHvll~vK~il~~~IPD~P~wV~~~~ 67 (108)
-+=+|-+....+.+++| +||+|.++++-.
T Consensus 349 tlp~e~~~~~~~r~~~w-lpd~p~d~~w~~ 377 (405)
T cd07223 349 TLPFEYIYFRSRRLVAW-LPDVPADLWWMQ 377 (405)
T ss_pred CchHHHHHHHHHHHHHH-cCCChHHHHHHH
Confidence 34578899999999998 799999776543
No 6
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=40.75 E-value=63 Score=26.58 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=16.0
Q ss_pred HHHHHHHhhcCCCChHHHHHHHH
Q psy17030 47 AVRFIISCVIPDLPDWVATEMAK 69 (108)
Q Consensus 47 ~vK~il~~~IPD~P~wV~~~~ar 69 (108)
++-++..+.+||.|+|.-.+-++
T Consensus 215 ~i~~~~~~~lpESpr~l~~~~~~ 237 (502)
T TIGR00887 215 LLALYFRLTIPETPRYTADVAKD 237 (502)
T ss_pred HHHHHHHHhCCCCHHHHHHhCcc
Confidence 44555668899999997654443
No 7
>KOG0569|consensus
Probab=35.23 E-value=1.9e+02 Score=25.26 Aligned_cols=35 Identities=11% Similarity=0.256 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy17030 36 LLIVALEHIMFAVRFIISCVIPDLPDWVATEMAKV 70 (108)
Q Consensus 36 l~vVvvEHvll~vK~il~~~IPD~P~wV~~~~ar~ 70 (108)
..+.+++-+...+-.++-...||.|+|.-.+..|+
T Consensus 184 ~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~ 218 (485)
T KOG0569|consen 184 PYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDE 218 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCH
Confidence 44556666777788889999999999998754444
No 8
>PF14899 DUF4492: Domain of unknown function (DUF4492)
Probab=34.89 E-value=81 Score=20.60 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=31.4
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHH
Q psy17030 26 FPEMSRTQTILLIVALEHIMFAVRFIISCVIPDLPDWVATEMAKVEFARREAL 78 (108)
Q Consensus 26 fp~~s~~~~il~vVvvEHvll~vK~il~~~IPD~P~wV~~~~ar~ey~~~eaL 78 (108)
|.+|+-...+|.++++- +++.+-.+=-..-|+.=..-...-+|.+|-.+|+.
T Consensus 12 Fr~MtlGktLW~IIliK-LfImF~vLK~FfFp~~l~~~~~~~~k~~~V~~~L~ 63 (64)
T PF14899_consen 12 FRNMTLGKTLWLIILIK-LFIMFAVLKLFFFPNFLNTKKTDEEKSDFVSKELI 63 (64)
T ss_pred hccCcHHHHHHHHHHHH-HHHHHHHHHHHHCcchhccCCCchHHHHHHHHHhc
Confidence 55677666777776665 33222223334466665555667778888887764
No 9
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=31.11 E-value=49 Score=25.77 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=8.3
Q ss_pred HHHhhHHHHh
Q psy17030 9 VLVNCALIGL 18 (108)
Q Consensus 9 VvtNCaLIg~ 18 (108)
+-|||+.+|.
T Consensus 110 ITTNCaVLgv 119 (193)
T COG4657 110 ITTNCAVLGV 119 (193)
T ss_pred HhhchHHHHH
Confidence 4589999996
No 10
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=27.30 E-value=1.5e+02 Score=21.36 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC
Q psy17030 34 TILLIVALEHIMFAVRFIISCVIPD 58 (108)
Q Consensus 34 ~il~vVvvEHvll~vK~il~~~IPD 58 (108)
.+.+.+.+||.+.+.+.+.+.--..
T Consensus 44 Flvl~iG~dn~f~l~~~~~~~~~~~ 68 (153)
T PF12349_consen 44 FLVLGIGVDNMFVLARAVRRTPSSL 68 (153)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcccc
Confidence 4567889999999999887654433
No 11
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=26.99 E-value=2.1e+02 Score=25.15 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=18.8
Q ss_pred hhHHHHHhhHHHHhhhhhhhhccC
Q psy17030 5 SLVSVLVNCALIGLSGQVHRMFPE 28 (108)
Q Consensus 5 sviAVvtNCaLIg~S~q~~~lfp~ 28 (108)
+++|-.-||..+..+.|..+ |-+
T Consensus 227 ~llasllnsi~l~~arQ~~~-fs~ 249 (497)
T COG3851 227 ALLASLLNSIALTIARQTWR-FSH 249 (497)
T ss_pred HHHHHHHHHHHHHHHHHHcc-cCC
Confidence 57888899999999988777 654
No 12
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=26.18 E-value=37 Score=26.38 Aligned_cols=11 Identities=27% Similarity=0.890 Sum_probs=9.3
Q ss_pred HHHhhHHHHhh
Q psy17030 9 VLVNCALIGLS 19 (108)
Q Consensus 9 VvtNCaLIg~S 19 (108)
++|||+++|-+
T Consensus 117 I~tNCaVLG~a 127 (199)
T PRK12456 117 LTIHCAIFGAT 127 (199)
T ss_pred HHHHHHHHHHH
Confidence 57999999965
No 13
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=25.29 E-value=69 Score=18.11 Aligned_cols=13 Identities=38% Similarity=0.887 Sum_probs=8.8
Q ss_pred hhhhhhccCCchH
Q psy17030 20 GQVHRMFPEMSRT 32 (108)
Q Consensus 20 ~q~~~lfp~~s~~ 32 (108)
.+++++||+++..
T Consensus 6 ~~L~~mFP~~~~~ 18 (42)
T PF02845_consen 6 QQLQEMFPDLDRE 18 (42)
T ss_dssp HHHHHHSSSS-HH
T ss_pred HHHHHHCCCCCHH
Confidence 3578899997644
No 14
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=24.89 E-value=41 Score=26.23 Aligned_cols=11 Identities=45% Similarity=0.845 Sum_probs=9.1
Q ss_pred HHHhhHHHHhh
Q psy17030 9 VLVNCALIGLS 19 (108)
Q Consensus 9 VvtNCaLIg~S 19 (108)
+.|||+++|-.
T Consensus 120 I~~NCaVLG~a 130 (202)
T PRK02830 120 ITVNCAIFGGV 130 (202)
T ss_pred HHHHHHHHHHH
Confidence 57999999963
No 15
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=24.49 E-value=42 Score=26.15 Aligned_cols=11 Identities=45% Similarity=0.845 Sum_probs=9.2
Q ss_pred HHHhhHHHHhh
Q psy17030 9 VLVNCALIGLS 19 (108)
Q Consensus 9 VvtNCaLIg~S 19 (108)
+.|||+++|-.
T Consensus 119 I~tNCaVLG~a 129 (200)
T TIGR01940 119 ITVNCAIFGGV 129 (200)
T ss_pred HHHHHHHHHHH
Confidence 57999999964
No 16
>PRK12274 serine/threonine protein kinase; Provisional
Probab=24.03 E-value=3.1e+02 Score=21.53 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH-HHHHHHHHHh---hcC--CCcccccCCCCCCCCcc
Q psy17030 39 VALEHIMFAVRFIISCVIPDLPDWVATEMAKV-EFARREALSR---ISS--TAVTPGLADNGGTGDSP 100 (108)
Q Consensus 39 VvvEHvll~vK~il~~~IPD~P~wV~~~~ar~-ey~~~eaL~~---~s~--~~~~~~~~~~~~~~~~~ 100 (108)
+.-|.+--++|+.-. .-|+.+...+.++-+. ...++--+-. .+. |.-+..-.||||+|+.|
T Consensus 152 L~~rDl~~llk~~~~-y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
T PRK12274 152 LAREDLRHLLKHKRM-YCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWEDNEGQGPKP 218 (218)
T ss_pred HHHHHHHHHHHHHHh-cCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccccCCCCCCCC
Confidence 334777777888655 6788777777665533 2222222211 111 66778889999999976
No 17
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=23.88 E-value=1.7e+02 Score=25.98 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=37.7
Q ss_pred hhhhHHHHHhhHHHH-------hhhhhhhhccCCch--H-HHHHHHHHHHHHHHHHHHHHHhhcCCCChHH
Q psy17030 3 VMSLVSVLVNCALIG-------LSGQVHRMFPEMSR--T-QTILLIVALEHIMFAVRFIISCVIPDLPDWV 63 (108)
Q Consensus 3 ~msviAVvtNCaLIg-------~S~q~~~lfp~~s~--~-~~il~vVvvEHvll~vK~il~~~IPD~P~wV 63 (108)
+++.+++..|..++. ++.+..++.++..+ . ..+.+++..--+.++++..++..+++.|.-.
T Consensus 185 Fy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~ 255 (509)
T COG3202 185 FYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFY 255 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh
Confidence 467788888988764 12223333333222 2 2333344444677888999999999999865
No 18
>TIGR01201 HU_rel DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe.
Probab=23.00 E-value=21 Score=25.85 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=16.7
Q ss_pred CCcccccCCCCCCCCcch
Q psy17030 84 TAVTPGLADNGGTGDSPS 101 (108)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~ 101 (108)
+.|+--+.|.||..||||
T Consensus 128 ~~~~~~~~~~~~~~~~~~ 145 (145)
T TIGR01201 128 NRYLKKPDDAGGAPNSPS 145 (145)
T ss_pred cccccccccccCCCCCCC
Confidence 889999999999999997
No 19
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=22.65 E-value=48 Score=25.63 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=9.1
Q ss_pred HHHhhHHHHhh
Q psy17030 9 VLVNCALIGLS 19 (108)
Q Consensus 9 VvtNCaLIg~S 19 (108)
+.|||+.+|-.
T Consensus 110 I~tNCaVLG~a 120 (193)
T PRK05151 110 ITTNCAVLGVA 120 (193)
T ss_pred HHHHHHHHHHH
Confidence 46999999964
No 20
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=22.43 E-value=49 Score=25.50 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=9.8
Q ss_pred HHHhhHHHHhhh
Q psy17030 9 VLVNCALIGLSG 20 (108)
Q Consensus 9 VvtNCaLIg~S~ 20 (108)
+.|||+++|-+.
T Consensus 109 I~tNCaVLG~a~ 120 (190)
T TIGR01943 109 ITTNCAVLGVAL 120 (190)
T ss_pred HHHHHHHHHHHH
Confidence 579999999654
No 21
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=21.71 E-value=51 Score=26.58 Aligned_cols=11 Identities=45% Similarity=0.902 Sum_probs=9.3
Q ss_pred HHHhhHHHHhh
Q psy17030 9 VLVNCALIGLS 19 (108)
Q Consensus 9 VvtNCaLIg~S 19 (108)
+.|||+++|-.
T Consensus 129 IttNCaVLG~a 139 (244)
T PRK01061 129 IAVNCAILGGV 139 (244)
T ss_pred HHHHHHHHHHH
Confidence 57999999965
No 22
>PRK09292 Na(+)-translocating NADH-quinone reductase subunit D; Validated
Probab=21.08 E-value=54 Score=25.72 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=9.9
Q ss_pred HHHhhHHHHhhh
Q psy17030 9 VLVNCALIGLSG 20 (108)
Q Consensus 9 VvtNCaLIg~S~ 20 (108)
++|||+++|-+.
T Consensus 108 IvtNC~VLGrae 119 (209)
T PRK09292 108 IITNCIVMGRAE 119 (209)
T ss_pred HHHHHHHHHHHH
Confidence 579999999754
Done!