Query psy17030
Match_columns 108
No_of_seqs 106 out of 139
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 20:03:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kwh_A RAla-binding protein 1; 84.2 1.1 3.9E-05 27.7 3.4 27 57-83 2-28 (56)
2 3kny_A Hypothetical protein BT 25.3 12 0.0004 28.1 -0.6 18 56-73 27-44 (218)
3 2dhy_A CUE domain-containing p 23.2 95 0.0032 19.1 3.5 40 21-60 24-64 (67)
4 3sz7_A HSC70 cochaperone (SGT) 18.3 1.9E+02 0.0064 18.0 6.3 59 47-106 101-162 (164)
5 1jb0_J Photosystem 1 reaction 15.6 1.2E+02 0.0042 17.3 2.5 12 17-28 24-35 (41)
6 2ejs_A Autocrine motility fact 14.7 83 0.0028 19.1 1.7 20 12-31 10-29 (58)
7 4g3o_A E3 ubiquitin-protein li 14.4 1.4E+02 0.0048 18.1 2.7 18 14-31 16-33 (58)
8 2z73_A Rhodopsin; visual pigme 14.1 2.7E+02 0.0091 20.7 4.8 43 3-48 43-85 (448)
9 2f6m_A Suppressor protein STP2 13.8 2.5E+02 0.0085 17.3 5.1 44 39-82 16-61 (65)
10 2ekf_A Ancient ubiquitous prot 13.7 1.2E+02 0.0042 18.5 2.3 17 15-31 13-29 (61)
No 1
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=84.19 E-value=1.1 Score=27.69 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=24.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhcC
Q psy17030 57 PDLPDWVATEMAKVEFARREALSRISS 83 (108)
Q Consensus 57 PD~P~wV~~~~ar~ey~~~eaL~~~s~ 83 (108)
||.|.+++.+++|.++.-.++-.+++.
T Consensus 2 p~~~e~I~~El~kQe~lL~~LH~e~~a 28 (56)
T 2kwh_A 2 SETQAGIKEEIRRQEFLLNSLHRDLQG 28 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 899999999999999998888777765
No 2
>3kny_A Hypothetical protein BT_3535; structural genomics, joint center for structural genomics, J protein structure initiative; 2.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.33 E-value=12 Score=28.14 Aligned_cols=18 Identities=28% Similarity=0.840 Sum_probs=14.7
Q ss_pred cCCCChHHHHHHHHHHHH
Q psy17030 56 IPDLPDWVATEMAKVEFA 73 (108)
Q Consensus 56 IPD~P~wV~~~~ar~ey~ 73 (108)
...+|.||+++...+||+
T Consensus 27 LdsVPeWVKeKvT~kEYE 44 (218)
T 3kny_A 27 LNTIPDWVSEKVTPKEYE 44 (218)
T ss_dssp TTCCCGGGGGSSCHHHHH
T ss_pred cccchHHHhccCCHHHHH
Confidence 357899999988888875
No 3
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.25 E-value=95 Score=19.13 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=21.3
Q ss_pred hhhhhccCCchHHHHHHHHHHH-HHHHHHHHHHHhhcCCCC
Q psy17030 21 QVHRMFPEMSRTQTILLIVALE-HIMFAVRFIISCVIPDLP 60 (108)
Q Consensus 21 q~~~lfp~~s~~~~il~vVvvE-Hvll~vK~il~~~IPD~P 60 (108)
+++++||++.....-..+..-. ++--.++.++...-|+.|
T Consensus 24 ~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~~ 64 (67)
T 2dhy_A 24 DFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESGP 64 (67)
T ss_dssp HHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCC
Confidence 4778899875433222222222 445566666666555544
No 4
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=18.28 E-value=1.9e+02 Score=18.02 Aligned_cols=59 Identities=20% Similarity=0.126 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCCC-hHHHHHHHHHHHHHHHHHHhhcC--CCcccccCCCCCCCCcchhhhhh
Q psy17030 47 AVRFIISCVIPDLP-DWVATEMAKVEFARREALSRISS--TAVTPGLADNGGTGDSPSLLSLL 106 (108)
Q Consensus 47 ~vK~il~~~IPD~P-~wV~~~~ar~ey~~~eaL~~~s~--~~~~~~~~~~~~~~~~~~~~~~~ 106 (108)
.++-.+..- |+.+ .|....+.+.+-...+...+.+. ...-..+.+..++|..|.+-+++
T Consensus 101 ~~~~al~~~-p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~pd~~~~~ 162 (164)
T 3sz7_A 101 AYEKGIEAE-GNGGSDAMKRGLETTKRKIEEANRGAEPPADDVDDAAGASRGAGGMPDLSSLA 162 (164)
T ss_dssp HHHHHHHHH-SSSCCHHHHHHHHHHHHHHHHHHHCSSCCCCCCCCSCGGGGC-----------
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCccCCCCcchhhhh
Confidence 334444443 5555 47777777665555555444322 23333444455567777766654
No 5
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=15.64 E-value=1.2e+02 Score=17.28 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=8.7
Q ss_pred HhhhhhhhhccC
Q psy17030 17 GLSGQVHRMFPE 28 (108)
Q Consensus 17 g~S~q~~~lfp~ 28 (108)
|+-=+++|+|||
T Consensus 24 g~lIEiNRffPD 35 (41)
T 1jb0_J 24 GILIEFNRFYPD 35 (41)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHhCcc
Confidence 444568899998
No 6
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.68 E-value=83 Score=19.06 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=13.5
Q ss_pred hhHHHHhhhhhhhhccCCch
Q psy17030 12 NCALIGLSGQVHRMFPEMSR 31 (108)
Q Consensus 12 NCaLIg~S~q~~~lfp~~s~ 31 (108)
|--+-.|..+++++||+++.
T Consensus 10 ~~q~~~mv~~V~~mfP~vp~ 29 (58)
T 2ejs_A 10 NSQLNAMAHQIQEMFPQVPY 29 (58)
T ss_dssp CCHHHHHHHHHHHHCCSSCH
T ss_pred hHHHHHHHHHHHHHcCCCCH
Confidence 33455567788888888653
No 7
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=14.45 E-value=1.4e+02 Score=18.14 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=12.6
Q ss_pred HHHHhhhhhhhhccCCch
Q psy17030 14 ALIGLSGQVHRMFPEMSR 31 (108)
Q Consensus 14 aLIg~S~q~~~lfp~~s~ 31 (108)
-+-.|..+++++||+++.
T Consensus 16 ql~~Mve~V~~mFPqv~~ 33 (58)
T 4g3o_A 16 QLNAMAHQIQEMFPQVPY 33 (58)
T ss_dssp HHHHHHHHHHHHCTTSCH
T ss_pred HHHHHHHHHHHHcCCCCH
Confidence 344566778899998754
No 8
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=14.13 E-value=2.7e+02 Score=20.75 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=24.9
Q ss_pred hhhhHHHHHhhHHHHhhhhhhhhccCCchHHHHHHHHHHHHHHHHH
Q psy17030 3 VMSLVSVLVNCALIGLSGQVHRMFPEMSRTQTILLIVALEHIMFAV 48 (108)
Q Consensus 3 ~msviAVvtNCaLIg~S~q~~~lfp~~s~~~~il~vVvvEHvll~v 48 (108)
++++++++.|+.++..--.-+++ -+..+.+++-+++=.+++.+
T Consensus 43 ii~i~gi~gN~lvi~vi~~~~~~---~~~~~~ll~~LaiaDll~~~ 85 (448)
T 2z73_A 43 ICGIIGCGGNGIVIYLFTKTKSL---QTPANMFIINLAFSDFTFSL 85 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTT---CSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHhhhhhhhcccc---CCccchHHHHHHHHHHHHHH
Confidence 35778999999988753221222 13455566555555555443
No 9
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=13.75 E-value=2.5e+02 Score=17.27 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHH--HHHHHHHHHHHHHHHhhc
Q psy17030 39 VALEHIMFAVRFIISCVIPDLPDWVA--TEMAKVEFARREALSRIS 82 (108)
Q Consensus 39 VvvEHvll~vK~il~~~IPD~P~wV~--~~~ar~ey~~~eaL~~~s 82 (108)
-++|-++..+--.+..-.-|...|++ ..++|+.|..|..++|..
T Consensus 16 ~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQF~~Rali~Ki~ 61 (65)
T 2f6m_A 16 YALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRIT 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777778887 688999999998888753
No 10
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=13.71 E-value=1.2e+02 Score=18.50 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=12.0
Q ss_pred HHHhhhhhhhhccCCch
Q psy17030 15 LIGLSGQVHRMFPEMSR 31 (108)
Q Consensus 15 LIg~S~q~~~lfp~~s~ 31 (108)
+-.|..+++++||+++.
T Consensus 13 l~~mv~~V~~mfP~vp~ 29 (61)
T 2ekf_A 13 LATLAQRVKEVLPHVPL 29 (61)
T ss_dssp HHHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHHHcCCCCH
Confidence 44567778888888653
Done!