Query psy17030
Match_columns 108
No_of_seqs 106 out of 139
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 20:04:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17030.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17030hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f6ma1 a.2.17.1 (A:322-385) V 15.0 1.1E+02 0.0078 17.5 5.2 45 39-83 15-61 (64)
2 d1jb0j_ f.23.18.1 (J:) Subunit 10.0 1.1E+02 0.008 16.1 2.5 11 18-28 25-35 (41)
3 d1doka_ d.9.1.1 (A:) Monocyte 9.2 68 0.005 18.1 1.6 14 58-71 56-69 (72)
4 d1bo0a_ d.9.1.1 (A:) Monocyte 9.0 69 0.005 18.1 1.6 13 58-70 55-67 (76)
5 d1mbya_ d.223.1.1 (A:) Serine/ 8.6 79 0.0057 18.7 1.7 12 57-68 53-64 (75)
6 d1x2ia1 a.60.2.5 (A:2-69) ATP- 8.5 1E+02 0.0075 16.8 2.2 27 55-82 14-40 (68)
7 d2ogqa1 d.223.1.2 (A:371-494) 8.0 1.3E+02 0.0093 18.9 2.7 30 55-84 94-123 (124)
8 d1huna_ d.9.1.1 (A:) Macrophag 7.4 90 0.0066 17.4 1.6 14 58-71 54-67 (69)
9 d2es9a1 a.247.1.1 (A:11-107) H 7.2 1.4E+02 0.01 18.1 2.5 24 47-70 31-54 (97)
10 d1u19a_ f.13.1.2 (A:) Rhodopsi 6.8 3.1E+02 0.023 17.5 5.7 40 4-46 47-86 (348)
No 1
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.00 E-value=1.1e+02 Score=17.47 Aligned_cols=45 Identities=27% Similarity=0.300 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHH--HHHHHHHHHHHHHHHhhcC
Q psy17030 39 VALEHIMFAVRFIISCVIPDLPDWVA--TEMAKVEFARREALSRISS 83 (108)
Q Consensus 39 VvvEHvll~vK~il~~~IPD~P~wV~--~~~ar~ey~~~eaL~~~s~ 83 (108)
-++|-++..+--.+..-.=|...|+| ..++|+.|..|-.+.|...
T Consensus 15 ~AieDaiy~L~~aL~~G~I~~d~ylK~vR~LaReQF~~RAl~~KI~~ 61 (64)
T d2f6ma1 15 YALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666778888 6889999999998888643
No 2
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=9.99 E-value=1.1e+02 Score=16.12 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=8.1
Q ss_pred hhhhhhhhccC
Q psy17030 18 LSGQVHRMFPE 28 (108)
Q Consensus 18 ~S~q~~~lfp~ 28 (108)
+-=+++|+|||
T Consensus 25 ~lIEiNRFfPD 35 (41)
T d1jb0j_ 25 ILIEFNRFYPD 35 (41)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHhhCch
Confidence 33468899998
No 3
>d1doka_ d.9.1.1 (A:) Monocyte chemoattractant protein-1 (MCP-1, MCAF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.16 E-value=68 Score=18.06 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=9.8
Q ss_pred CCChHHHHHHHHHH
Q psy17030 58 DLPDWVATEMAKVE 71 (108)
Q Consensus 58 D~P~wV~~~~ar~e 71 (108)
..-.||++-|++.+
T Consensus 56 P~~~WVk~~i~~ld 69 (72)
T d1doka_ 56 PKQKWVQDSMDHLD 69 (72)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH
Confidence 33459998888764
No 4
>d1bo0a_ d.9.1.1 (A:) Monocyte chemoattractant protein-3 (MCP-3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.02 E-value=69 Score=18.10 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=8.8
Q ss_pred CCChHHHHHHHHH
Q psy17030 58 DLPDWVATEMAKV 70 (108)
Q Consensus 58 D~P~wV~~~~ar~ 70 (108)
..-.||+.-+++.
T Consensus 55 P~~~WVk~~i~~l 67 (76)
T d1bo0a_ 55 PTQKWVQDFMKHL 67 (76)
T ss_dssp TTSHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 3345998777765
No 5
>d1mbya_ d.223.1.1 (A:) Serine/threonine-protein kinase Sak C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.61 E-value=79 Score=18.69 Aligned_cols=12 Identities=17% Similarity=0.692 Sum_probs=9.2
Q ss_pred CCCChHHHHHHH
Q psy17030 57 PDLPDWVATEMA 68 (108)
Q Consensus 57 PD~P~wV~~~~a 68 (108)
.+.|.|||+|+.
T Consensus 53 d~LP~~vreKL~ 64 (75)
T d1mbya_ 53 EKLPEYIKQKLQ 64 (75)
T ss_dssp SCCCHHHHHHHT
T ss_pred ccccHHHHHHHh
Confidence 468999988764
No 6
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=8.54 E-value=1e+02 Score=16.85 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.6
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHhhc
Q psy17030 55 VIPDLPDWVATEMAKVEFARREALSRIS 82 (108)
Q Consensus 55 ~IPD~P~wV~~~~ar~ey~~~eaL~~~s 82 (108)
.||.++.-...++.+. |.+.+.+.+.+
T Consensus 14 ~I~gIG~~~a~~L~~~-f~s~~~i~~As 40 (68)
T d1x2ia1 14 GLPHVSATLARRLLKH-FGSVERVFTAS 40 (68)
T ss_dssp TSTTCCHHHHHHHHHH-HCSHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHH-cCCHHHHHHhH
Confidence 6999999999999887 88888887643
No 7
>d2ogqa1 d.223.1.2 (A:371-494) Serine/threonine-protein kinase plk C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.04 E-value=1.3e+02 Score=18.90 Aligned_cols=30 Identities=7% Similarity=0.218 Sum_probs=25.0
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHhhcCC
Q psy17030 55 VIPDLPDWVATEMAKVEFARREALSRISST 84 (108)
Q Consensus 55 ~IPD~P~wV~~~~ar~ey~~~eaL~~~s~~ 84 (108)
.+.+.|..++.++.-.+|.+..+...+.++
T Consensus 94 ~~~~~P~~l~kKv~ll~~F~~Ym~~~L~~~ 123 (124)
T d2ogqa1 94 TVSSHPNSLMKKITLLKYFRNYMSEHLLKA 123 (124)
T ss_dssp EGGGCCTTTHHHHHHHHHHHHHHHHHCCCC
T ss_pred EcccCCHHHhhHhHHHHHHHHHHHHHHhhc
Confidence 456788999999999999999988887665
No 8
>d1huna_ d.9.1.1 (A:) Macrophage inflammatory protein, MIP {Human (Homo sapiens), 1-beta [TaxId: 9606]}
Probab=7.42 E-value=90 Score=17.37 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=9.6
Q ss_pred CCChHHHHHHHHHH
Q psy17030 58 DLPDWVATEMAKVE 71 (108)
Q Consensus 58 D~P~wV~~~~ar~e 71 (108)
..-.||+.-|++.+
T Consensus 54 P~~~WVq~~i~~l~ 67 (69)
T d1huna_ 54 PSESWVQEYVYDLE 67 (69)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHh
Confidence 34459988887764
No 9
>d2es9a1 a.247.1.1 (A:11-107) Hypothetical protein YoaC {Salmonella typhimurium [TaxId: 90371]}
Probab=7.23 E-value=1.4e+02 Score=18.10 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=21.9
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHH
Q psy17030 47 AVRFIISCVIPDLPDWVATEMAKV 70 (108)
Q Consensus 47 ~vK~il~~~IPD~P~wV~~~~ar~ 70 (108)
.+||+=..-+|..|.+|..+..++
T Consensus 31 ifKyLkelGVPas~~dv~aRg~qe 54 (97)
T d2es9a1 31 ILKYLHDLGVPVSPEVVVARGEQE 54 (97)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHhcccc
Confidence 468999999999999999999888
No 10
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.83 E-value=3.1e+02 Score=17.45 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=22.9
Q ss_pred hhhHHHHHhhHHHHhhhhhhhhccCCchHHHHHHHHHHHHHHH
Q psy17030 4 MSLVSVLVNCALIGLSGQVHRMFPEMSRTQTILLIVALEHIMF 46 (108)
Q Consensus 4 msviAVvtNCaLIg~S~q~~~lfp~~s~~~~il~vVvvEHvll 46 (108)
++++|++.|+.+|..--+-+++ -++.+.+++-.++=+++.
T Consensus 47 i~v~gi~gN~lvi~vi~~~k~l---r~~~~~~l~nLaiaDll~ 86 (348)
T d1u19a_ 47 LIMLGFPINFLTLYVTVQHKKL---RTPLNYILLNLAVADLFM 86 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTC---CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHeehhhhccCCC---CCHhHHHHHHHHHHHHHH
Confidence 5678999999988753221221 145555555555554444
Done!