RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17030
         (108 letters)



>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel.  The
           family carries eight putative transmembrane domains,
           and, although it has no similarity to other known
           channel proteins, it is clearly a calcium-activated
           ionic channel. It is expressed in various secretory
           epithelia, the retina and sensory neurons, and mediates
           receptor-activated chloride currents in diverse
           physiological processes.
          Length = 449

 Score = 79.2 bits (196), Expect = 1e-18
 Identities = 20/74 (27%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 1   MEVMSLVSVLVNCALIGLS--GQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIPD 58
           +E++S +SV+ N  LI  +  G +     +      +L  + LEH++  ++F+I+ +IPD
Sbjct: 376 LELLSWLSVITNAGLIAFTSTGTLKGYLNDHLLAARLLFFLILEHVVLLLKFLIAWLIPD 435

Query: 59  LPDWVATEMAKVEF 72
           +P+WV  ++ + ++
Sbjct: 436 IPEWVRIKLKREKY 449


>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional.
          Length = 398

 Score = 28.5 bits (64), Expect = 0.69
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 4/34 (11%)

Query: 59  LPDWVATEMAKVEFARREALSRISSTAVTPGLAD 92
           L D  AT +A   FA R AL R     VT G  D
Sbjct: 325 LSDHGATPLALATFAARRALDR----RVTIGATD 354


>gnl|CDD|178400 PLN02803, PLN02803, beta-amylase.
          Length = 548

 Score = 26.4 bits (58), Expect = 3.1
 Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 1/17 (5%)

Query: 53  SCVIPDLPDWVATEMAK 69
           SC IP LP WV  EM+K
Sbjct: 176 SCSIP-LPPWVLEEMSK 191


>gnl|CDD|177643 PHA03415, PHA03415, putative internal virion protein; Provisional.
          Length = 1019

 Score = 26.5 bits (58), Expect = 3.6
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 62  WVATEMAKVEFARREALSRISSTAVTPGLAD 92
            +A  +A  E A    L++  + A   G+ D
Sbjct: 138 EIAQGIADHE-ANEAILAKHGAVAFASGMLD 167


>gnl|CDD|236531 PRK09467, envZ, osmolarity sensor protein; Provisional.
          Length = 435

 Score = 25.6 bits (57), Expect = 6.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 24 RMFPEMSRTQTILLIVAL 41
          R  P  S  +T+LLIV L
Sbjct: 2  RFSPRSSFARTLLLIVTL 19


>gnl|CDD|222854 PHA02518, PHA02518, ParA-like protein; Provisional.
          Length = 211

 Score = 25.2 bits (55), Expect = 6.8
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 8/81 (9%)

Query: 13  CALIGLSGQVHRMFPEMSRTQTILLI----VALEHIMFAVRFIISCVIPDLPD----WVA 64
             ++ +   +    P+++     +++       E    A+R     +IP  P     W A
Sbjct: 57  IPVVRMGKSIRADLPKVASGYDYVVVDGAPQDSELARAALRIADMVLIPVQPSPFDIWAA 116

Query: 65  TEMAKVEFARREALSRISSTA 85
            ++ ++  AR+E    +   A
Sbjct: 117 PDLVELIKARQEVTDGLPKFA 137


>gnl|CDD|179431 PRK02491, PRK02491, putative deoxyribonucleotide triphosphate
           pyrophosphatase/unknown domain fusion protein; Reviewed.
          Length = 328

 Score = 25.5 bits (56), Expect = 7.2
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)

Query: 57  PDLPDWVATEMAKVEFAR--REALSRISSTAVTPGLADNGG 95
           PDLP+   T M   E AR   E +SR++   V   LAD+ G
Sbjct: 161 PDLPEVAETGMTFEENARLKAETISRLTGKMV---LADDSG 198


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,407,489
Number of extensions: 468238
Number of successful extensions: 507
Number of sequences better than 10.0: 1
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 20
Length of query: 108
Length of database: 10,937,602
Length adjustment: 73
Effective length of query: 35
Effective length of database: 7,699,760
Effective search space: 269491600
Effective search space used: 269491600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)