RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17030
         (108 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.9 bits (72), Expect = 0.028
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 33/126 (26%)

Query: 6   LVSVLVNCALIGL--------SGQVHRMFPEMSRTQTILLIVALEHIMFAVRFIISCVIP 57
           L+S+ ++C LIG+        + ++    P   R+         + ++ AV   I+    
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV--AIAET-- 286

Query: 58  DLPDW-----VATEMAKVEF---AR-REALSRISSTAVTPGL----ADNGGTGDSPSLLS 104
               W        +   V F    R  EA      T++ P +     +N     SP +LS
Sbjct: 287 --DSWESFFVSVRKAITVLFFIGVRCYEAYPN---TSLPPSILEDSLENNEGVPSP-MLS 340

Query: 105 L--LTQ 108
           +  LTQ
Sbjct: 341 ISNLTQ 346



 Score = 27.3 bits (60), Expect = 1.0
 Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 38/120 (31%)

Query: 7   VSV-LVN-----------CALIGLSGQVHRMFPEMSRTQT-ILLIVALEHIMFAVRFI-I 52
           V + LVN            +L GL+  + +        Q+ I    +   + F+ RF+ +
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF--SERKLKFSNRFLPV 423

Query: 53  SCVIP-------DLPDWVATEMAKVEFA-RREALS------------RISSTAVTPGLAD 92
           +   P          D +  ++ K   +   + +             R+ S +++  + D
Sbjct: 424 AS--PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           RED beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 27.9 bits (62), Expect = 0.74
 Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 2/48 (4%)

Query: 62  WVATEMAKVEFARREALSRISSTAVTPGLAD-NGGTGDSPSLLSLLTQ 108
           +   EMA                  +P +AD NGG    P L     +
Sbjct: 697 FSQKEMAFNLLGLLTPEVV-ELCQKSPVMADLNGGLQFVPELKEFTAK 743


>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
           {Homo sapiens}
          Length = 386

 Score = 26.7 bits (58), Expect = 1.6
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 54  CVIPDLPDWVATEMAKVEF--ARREALSR 80
             +P LP+  AT   + +F   R+  L  
Sbjct: 96  ISVPHLPEKQATGRFEEDFIEKRKRRLIL 124


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.6 bits (55), Expect = 4.4
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 2   EVMSLVSVLVNCALIGLSGQVHRMFPEMSRTQTILLIVALEHIMFA 47
           EV SL+   ++C    L  +V    P     + + +I        A
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNP-----RRLSIIAESIRDGLA 342


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0818    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,598,530
Number of extensions: 87214
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 13
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)